RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (222 letters)



>gnl|CDD|30543 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
           metabolism].
          Length = 191

 Score =  219 bits (561), Expect = 3e-58
 Identities = 90/190 (47%), Positives = 132/190 (69%), Gaps = 5/190 (2%)

Query: 14  RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE 73
           +G+++++S PSGVGKST+ + LL+ D     S+S TTR  RP EVDG DY+F++   F E
Sbjct: 3   KGLLIVLSGPSGVGKSTLVKALLE-DDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEE 61

Query: 74  LKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFI 133
           L + + F+E AE HGN+YGT R+P+E+ +++GKD++ DID QGA  + K+M  N +S FI
Sbjct: 62  LIERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMP-NAVSIFI 120

Query: 134 LPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILK 193
           LPP+++EL  RL  R     + +E +  RL+NA  EI   + +DYV++NDDLE +L  LK
Sbjct: 121 LPPSLEELERRLKGR---GTDSEEVIARRLENAKKEISHADEFDYVIVNDDLEKALEELK 177

Query: 194 SVIEVERIRR 203
           S+I  ER+RR
Sbjct: 178 SIILAERLRR 187


>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
           also known as guanylate kinase (GKase), catalyzes the
           reversible phosphoryl transfer from adenosine
           triphosphate (ATP) to guanosine monophosphate (GMP) to
           yield adenosine diphosphate (ADP) and guanosine
           diphosphate (GDP). It plays an essential role in the
           biosynthesis of guanosine triphosphate (GTP). This
           enzyme is also important for the activation of some
           antiviral and anticancer agents, such as acyclovir,
           ganciclovir, carbovir, and thiopurines..
          Length = 137

 Score =  157 bits (400), Expect = 2e-39
 Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 42/178 (23%)

Query: 17  MLIISSPSGVGKSTIARHLLK-CDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75
           ++++S PSGVGKST+ + LL+  D NF  S+S TTR  RP EVDG DY+F+S   F  L 
Sbjct: 1   LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLI 60

Query: 76  KANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILP 135
           +   F+E AE HGN+YGT +  +EE +++GK ++ +ID QGA+ + K+   + +S FILP
Sbjct: 61  ENGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQV-KKSYPDAVSIFILP 119

Query: 136 PTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILK 193
           P                                        DYV++NDDLE +   LK
Sbjct: 120 P----------------------------------------DYVIVNDDLEKAYEELK 137


>gnl|CDD|144280 pfam00625, Guanylate_kin, Guanylate kinase. 
          Length = 182

 Score =  148 bits (375), Expect = 1e-36
 Identities = 74/183 (40%), Positives = 109/183 (59%), Gaps = 5/183 (2%)

Query: 18  LIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
           +++S PSGVGKS I + LL      F  S+S TTR  RP EVDGKDY+F+S         
Sbjct: 4   IVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDIS 63

Query: 77  ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
           AN F+E AE +GN+YGT ++ IE+    GK  + D+D QG + L K    + +S FI PP
Sbjct: 64  ANEFLEHAEFNGNYYGTSKEAIEQIAESGKICILDVDIQGVKQLRKAE-LSPISVFIKPP 122

Query: 137 TMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILKSVI 196
           +++ L  RL  R     E +EK+  R++ A  E + +  +DY+++NDDL+ +   LK ++
Sbjct: 123 SLKVLQRRLKGR---GTEQEEKINKRMEAAEQEFQHYAEFDYIIVNDDLDEAYKKLKEIL 179

Query: 197 EVE 199
           E E
Sbjct: 180 EAE 182


>gnl|CDD|35926 KOG0707, KOG0707, KOG0707, Guanylate kinase [Nucleotide transport
           and metabolism].
          Length = 231

 Score =  105 bits (262), Expect = 1e-23
 Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 9/193 (4%)

Query: 18  LIISSPSGVGKSTIARHLLKCDQN-FEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
           +++S PSGVGKST+ + L +     F  S+S TTR  R  EV GK Y+F +   F  + K
Sbjct: 40  IVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIK 99

Query: 77  ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
            N FIE A   GN YGT    ++  +  GK  + DID QG Q + +    + +  FI PP
Sbjct: 100 NNEFIEFATFSGNKYGTSIAAVQRLMLSGKVCILDIDLQGVQPI-RATSLDAIYIFIKPP 158

Query: 137 TMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWE---FYDYVLIN-DDLENSLSIL 192
           +++ L  RL  R     E +E +  RL++A  E +  E    +D V++N D LE +   L
Sbjct: 159 SIKILEERLRAR---GTETEESLLKRLKSAEEEFEILENSGSFDLVIVNSDRLEEAYKEL 215

Query: 193 KSVIEVERIRRHR 205
           +  I  +    H+
Sbjct: 216 EIFISSDDKESHQ 228


>gnl|CDD|35829 KOG0609, KOG0609, KOG0609, Calcium/calmodulin-dependent serine
           protein kinase/membrane-associated guanylate kinase
           [Signal transduction mechanisms].
          Length = 542

 Score = 90.4 bits (224), Expect = 3e-19
 Identities = 52/188 (27%), Positives = 95/188 (50%), Gaps = 11/188 (5%)

Query: 18  LIISSPSGVGKSTIARHLLKCD-QNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
           L++    GVG+  +   L++ +   F  ++  TTR  R +EVDG +Y+F+S        +
Sbjct: 343 LVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIR 402

Query: 77  ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSF--FIL 134
           A  F+E  E  GN YGT  D +   I+ GK  + D++ Q  + L     +    +  FI 
Sbjct: 403 AGKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRT---AEFKPYVIFIA 459

Query: 135 PPTMQEL-----CSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSL 189
           PP+++EL      + +S    K   D++  ++  ++A  E +   ++D +++N DL+ + 
Sbjct: 460 PPSLEELRALRKVAVMSTIVAKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTF 519

Query: 190 SILKSVIE 197
             LK+ IE
Sbjct: 520 RELKTAIE 527


>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
           metabolism [Inorganic ion transport and metabolism].
          Length = 192

 Score = 45.7 bits (108), Expect = 9e-06
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 12/155 (7%)

Query: 15  GMMLIISSPSGVGKSTI---ARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRF 71
           G ++ +  PSG GK T+   AR  L           V TR   P +  G+D+  LS + F
Sbjct: 5   GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITR---PADAGGEDHDALSEAEF 61

Query: 72  NELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSF 131
           N      AF    + HG  YG   + I+  ++ G  +L +          ++     L  
Sbjct: 62  NTRAGQGAFALSWQAHGLSYGIPAE-IDLWLAAGDVVLVNGSRAVLPQARRRYPQ--LLV 118

Query: 132 FILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNA 166
             +  + + L  RL+ R ++++E+   +  RL  A
Sbjct: 119 VCITASPEVLAQRLAERGRESREE---ILARLARA 150


>gnl|CDD|38419 KOG3209, KOG3209, KOG3209, WW domain-containing protein [General
           function prediction only].
          Length = 984

 Score = 36.2 bits (83), Expect = 0.008
 Identities = 28/123 (22%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 47  SVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGK 106
            V    RR  E +  DY F ++  F  L+ +   +E      N+YGT + P  E  +   
Sbjct: 66  QVPCTTRRILEGEVPDYSFSTVPIFLCLEVSGCLLEFGTYESNYYGTPKPP--ECPADDD 123

Query: 107 DMLFDIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNA 166
            ML D +     N  +       S+ I    M+      +   ++ +ED        QN 
Sbjct: 124 MMLTDQELLLPPNSAESYRKRTKSYSI----MENAGI--TTPEEEEEEDPGWENGSGQNY 177

Query: 167 YSE 169
             E
Sbjct: 178 SVE 180


>gnl|CDD|35927 KOG0708, KOG0708, KOG0708, Membrane-associated guanylate kinase
           MAGUK (contains PDZ, SH3, HOOK and GUK domains)
           [Nucleotide transport and metabolism].
          Length = 359

 Score = 32.6 bits (74), Expect = 0.097
 Identities = 31/133 (23%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 67  SLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGS 126
           S        K   FI+  +     YGT    I E   KGK  L D+     + L  +   
Sbjct: 223 SREEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQ-RNQI 281

Query: 127 NVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLE 186
             +  FI   + ++    +  R  K   ++ K  L  +    E +   ++  V+    LE
Sbjct: 282 YPIVIFIRVKSKKQ----IKERNLKITGEQAKELLE-RARKLEQELDRYFTLVVQGGSLE 336

Query: 187 NSLSILKSVIEVE 199
             LS +K +IE E
Sbjct: 337 ELLSQVKDIIEDE 349


>gnl|CDD|37181 KOG1970, KOG1970, KOG1970, Checkpoint RAD17-RFC complex,
           RAD17/RAD24 component [Energy production and conversion,
           Replication, recombination and repair].
          Length = 634

 Score = 31.2 bits (70), Expect = 0.22
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 12  NHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRF 71
                +L+++ PSG GKST  + L K +  +++         +  E    +  FL     
Sbjct: 107 KLGSRILLLTGPSGCGKSTTVKVLSK-ELGYQLIEWSNPINLKEPENLHNETSFLMFPYQ 165

Query: 72  NELKKANAFIEKAEVHGNFYGTLRD 96
           ++L    +F+ +A  +G+   +  D
Sbjct: 166 SQLAVFESFLLRATKYGSLQMSGDD 190


>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
          transport system involved in resistant to organic
          solvents; ABC transporters are a large family of
          proteins involved in the transport of a wide variety of
          different compounds, like sugars, ions, peptides, and
          more complex organic molecules.  The nucleotide binding
          domain shows the highest similarity between all members
          of the family.  ABC transporters are a subset of
          nucleotide hydrolases that contain a signature motif,
          Q-loop, and H-loop/switch region, in addition to, the
          Walker A motif/P-loop and Walker B motif commonly found
          in a number of ATP- and GTP-binding and hydrolyzing
          proteins..
          Length = 235

 Score = 30.5 bits (69), Expect = 0.39
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 13 HRGMMLIISSPSGVGKSTIARHLL 36
           RG +L I  PSG GKST+ R ++
Sbjct: 24 RRGEILAIIGPSGSGKSTLLRLIV 47


>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter
          subfamily specific for the transport of dipeptides,
          oligopeptides (OppD), and nickel (NikDE).  The NikABCDE
          system of E. coli belongs to this family and is
          composed of the periplasmic binding protein NikA, two
          integral membrane components (NikB and NikC), and two
          ATPase (NikD and NikE).  The NikABCDE transporter is
          synthesized under anaerobic conditions to meet the
          increased demand for nickel resulting from hydrogenase
          synthesis.  The molecular mechanism of nickel uptake in
          many bacteria and most archaea is not known.  Many
          other members of this ABC family are also involved in
          the uptake of dipeptides and oligopeptides.  The
          oligopeptide transport system (Opp) is a five-component
          ABC transport composed of a membrane-anchored substrate
          binding proteins (SRP), OppA, two transmembrane
          proteins, OppB and OppC, and two ATP-binding domains,
          OppD and OppF..
          Length = 228

 Score = 29.7 bits (67), Expect = 0.62
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 13 HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFN 72
           +G  L +   SG GKST+AR +L   +    SI            DGKD   LS     
Sbjct: 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSI----------IFDGKDLLKLSRRLRK 78

Query: 73 ELKKANAFI 81
            +K    +
Sbjct: 79 IRRKEIQMV 87


>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258. 
          Length = 161

 Score = 29.5 bits (67), Expect = 0.77
 Identities = 13/39 (33%), Positives = 14/39 (35%), Gaps = 7/39 (17%)

Query: 23 PSGVGKSTIARHLLKCDQNFEMSISV-------TTRVRR 54
           SGVGKST+   LL         IS        TT    
Sbjct: 43 QSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVE 81


>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
          cellular Activities) superfamily represents an ancient
          group of ATPases belonging to the ASCE (for additional
          strand, catalytic E) division of the P-loop NTPase
          fold. The ASCE division also includes ABC, RecA-like,
          VirD4-like, PilT-like, and SF1/2 helicases. Members of
          the AAA+ ATPases function as molecular chaperons,
          ATPase subunits of proteases, helicases, or
          nucleic-acid stimulated ATPases. The AAA+ proteins
          contain several distinct features in addition to the
          conserved alpha-beta-alpha core domain structure and
          the Walker A and B motifs of the P-loop NTPases..
          Length = 151

 Score = 29.4 bits (66), Expect = 0.81
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 18 LIISSPSGVGKSTIARHLLKC--DQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75
          L++  P G GK+T+AR +                + +     V     +FL    F   +
Sbjct: 22 LLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAE 81

Query: 76 KANAFI 81
          KA   +
Sbjct: 82 KAKPGV 87


>gnl|CDD|29833 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
          protein kinase/phosphatase, controls the
          phosphorylation state of the phosphocarrier protein HPr
          and regulates the utilization of carbon sources by
          gram-positive bacteria. It catalyzes both the
          ATP-dependent phosphorylation of Ser-46 of HPr and its
          dephosphorylation by phosphorolysis. The latter
          reaction uses inorganic phosphate as substrate and
          produces pyrophosphate. Phosphoenolpyruvate
          carboxykinase (PEPCK) and the C-terminal catalytic
          domain of HprK/P are structurally similar with
          conserved active site residues suggesting these two
          phosphotransferases have related functions.  The HprK/P
          N-terminal domain is structurally similar to the
          N-terminal domains of the MurE and MurF amino acid
          ligases..
          Length = 149

 Score = 29.4 bits (66), Expect = 0.83
 Identities = 11/23 (47%), Positives = 18/23 (78%)

Query: 15 GMMLIISSPSGVGKSTIARHLLK 37
          G+ ++I+ PSG+GKS +A  L+K
Sbjct: 14 GIGVLITGPSGIGKSELALELIK 36


>gnl|CDD|30835 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell
          division and chromosome partitioning].
          Length = 265

 Score = 29.3 bits (65), Expect = 0.84
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 16 MMLIISSPSGVGKSTIARHL 35
          ++ + S   GVGKST+A +L
Sbjct: 59 VIAVTSGKGGVGKSTVAVNL 78


>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
          transport system.  Phosphonates are a class of
          organophosphorus compounds characterized by a
          chemically stable carbon-to-phosphorus (C-P) bond.
          Phosphonates are widespread among naturally occurring
          compounds in all kingdoms of wildlife, but only
          procaryotic microorganisms are able to cleave this
          bond.  Certain bacteria such as E. coli can use
          alkylphosphonates as a phosphorus source.  ABC
          transporters are a subset of nucleotide hydrolases that
          contain a signature motif, Q-loop, and H-loop/switch
          region, in addition to, the Walker A motif/P-loop and
          Walker B motif commonly found in a number of ATP- and
          GTP-binding and hydrolyzing proteins..
          Length = 241

 Score = 29.4 bits (66), Expect = 0.86
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
          + G  + +  PSG GKST+ R L
Sbjct: 25 NPGEFVALIGPSGAGKSTLLRCL 47


>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
           transport and metabolism].
          Length = 178

 Score = 29.5 bits (66), Expect = 0.87
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 20/156 (12%)

Query: 16  MMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELK 75
           M ++I  P G GKST+A+ L K      +    T  + R    +  +            +
Sbjct: 1   MRILILGPPGAGKSTLAKKLAKKLGLPHLD---TGDILRAAIAERTELG----------E 47

Query: 76  KANAFIEKAEV--HGNFYGTLRDPIEETISKGKDMLFDI-----DWQGAQNLHKQMGSNV 128
           +   +I+K E+       G +++ ++E   K   +L          +  + L K++G  +
Sbjct: 48  EIKKYIDKGELVPDEIVNGLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRL 107

Query: 129 LSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQ 164
                L    + L  RL  R  +  +++E V+ RL+
Sbjct: 108 DMVIELDVPEELLLERLLGRRVREDDNEETVKKRLK 143


>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
          Protein Dependent) systems that are largely represented
          in archaea and eubacteria and are primarily involved in
          scavenging solutes from the environment.  ABC
          transporters are a large family of proteins involved in
          the transport of a wide variety of different compounds,
          like sugars, ions, peptides, and more complex organic
          molecules.  The nucleotide binding domain shows the
          highest similarity between all members of the family.
          ABC transporters are a subset of nucleotide hydrolases
          that contain a signature motif, Q-loop, and
          H-loop/switch region, in addition to, the Walker A
          motif/P-loop and Walker B motif commonly found in a
          number of ATP- and GTP-binding and hydrolyzing
          proteins..
          Length = 178

 Score = 29.4 bits (66), Expect = 0.91
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 13 HRGMMLIISSPSGVGKSTIARHLLK 37
            G ++ +  PSG GKST+ R +  
Sbjct: 24 EAGEIVALLGPSGSGKSTLLRCIAG 48


>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport
          system, ATPase component [Inorganic ion transport and
          metabolism].
          Length = 258

 Score = 29.0 bits (65), Expect = 0.98
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
          ++G M+ I  PSG GKST+ R L
Sbjct: 28 NQGEMVAIIGPSGAGKSTLLRSL 50


>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
           systems, contain duplicated ATPase [General function
           prediction only].
          Length = 539

 Score = 28.6 bits (64), Expect = 1.3
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 11/53 (20%)

Query: 13  HRGMMLIISSPSGVGKSTIARHLLK-----------CDQNFEMSISVTTRVRR 54
             G  L +   SG GKST+AR L               Q+ +++     R+RR
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRR 367


>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
          component of the protease secretion system PrtD, a
          60-kDa integral membrane protein sharing 37% identity
          with HlyB, the ABC component of the alpha-hemolysin
          secretion pathway, in the C-terminal domain.  They
          export degradative enzymes by using a type I protein
          secretion system and  lack an N-terminal signal
          peptide, but contain a C-terminal secretion signal.
          The Type I secretion apparatus is made up of three
          components, an ABC transporter, a membrane fusion
          protein (MFP), and an outer membrane protein (OMP).
          For the HlyA transporter complex, HlyB (ABC
          transporter) and HlyD (MFP) reside in the inner
          membrane of E. coli.  The OMP component is TolC, which
          is thought to interact with the MFP to form a
          continuous channel across the periplasm from the
          cytoplasm to the exterior.  HlyB belongs to the family
          of ABC transporters, which are ubiquitous,
          ATP-dependent transmembrane pumps or channels.  The
          spectrum of transport substrates ranges from inorganic
          ions, nutrients such as amino acids, sugars, or
          peptides, hydrophobic drugs, to large polypeptides,
          such as HlyA..
          Length = 173

 Score = 28.6 bits (64), Expect = 1.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 15 GMMLIISSPSGVGKSTIARHLL 36
          G  L I  PSG GKST+AR +L
Sbjct: 28 GESLAIIGPSGSGKSTLARLIL 49


>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase.  This family includes RNA
          helicases thought to be involved in duplex unwinding
          during viral RNA replication. Members of this family
          are found in a variety of single stranded RNA viruses.
          Length = 105

 Score = 28.4 bits (64), Expect = 1.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 18 LIISSPSGVGKSTIARHLLK 37
          + +  P G GKST+A++L +
Sbjct: 1  IWLYGPPGCGKSTLAKYLAR 20


>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
          nucleotide-binding domain; ABC transporters are a large
          family of proteins involved in the transport of a wide
          variety of different compounds, like sugars, ions,
          peptides, and more complex organic molecules.  The
          nucleotide-binding domain shows the highest similarity
          between all members of the family.  ABC transporters
          are a subset of nucleotide hydrolases that contain a
          signature motif, Q-loop, and H-loop/switch region, in
          addition to, the Walker A motif/P-loop and Walker B
          motif commonly found in a number of ATP- and
          GTP-binding and hydrolyzing proteins..
          Length = 157

 Score = 28.3 bits (63), Expect = 1.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 13 HRGMMLIISSPSGVGKSTIARHLL 36
            G ++ +  P+G GKST+ R + 
Sbjct: 23 KAGEIVALVGPNGSGKSTLLRAIA 46


>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component
          of a cobalt transport family found in bacteria,
          archaea, and eukaryota.  The transition metal cobalt is
          an essential component of many enzymes and must be
          transported into cells in appropriate amounts when
          needed.  This ABC transport system of the CbiMNQO
          family is involved in cobalt transport in association
          with the cobalamin (vitamin B12) biosynthetic pathways.
           Most of cobalt (Cbi) transport systems possess a
          separate CbiN component, the cobalt-binding periplasmic
          protein, and they are encoded by the conserved gene
          cluster cbiMNQO.  Both the CbiM and CbiQ proteins are
          integral cytoplasmic membrane proteins, and the CbiO
          protein has the linker peptide and the Walker A and B
          motifs commonly found in the ATPase components of the
          ABC-type transport systems..
          Length = 211

 Score = 28.2 bits (63), Expect = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
           +G  ++I  P+G GKST+ R L
Sbjct: 25 KKGEFVLIVGPNGSGKSTLLRLL 47


>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
          reversible phosphorylation of cytidine monophosphate
          (CMP) to produce cytidine diphosphate (CDP), using ATP
          as the preferred phosphoryl donor..
          Length = 147

 Score = 28.2 bits (63), Expect = 1.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 20 ISSPSGVGKSTIARHL 35
          I  P+G GKST+A+ L
Sbjct: 4  IDGPAGSGKSTVAKLL 19


>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase.  Enzyme that
          catalyses the phosphorylation of adenylylsulphate to
          3'-phosphoadenylylsulfate. This domain contains an ATP
          binding P-loop motif.
          Length = 157

 Score = 28.0 bits (63), Expect = 1.9
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTT 50
          RG  +  +  SG GKSTIA  L +  + F   ISV  
Sbjct: 1  RGCTVWFTGLSGSGKSTIANALER--KLFAQGISVYV 35


>gnl|CDD|143799 pfam00006, ATP-synt_ab, ATP synthase alpha/beta family,
          nucleotide-binding domain.  This family includes the
          ATP synthase alpha and beta subunits, the ATP synthase
          associated with flagella and the termination factor
          Rho.
          Length = 213

 Score = 28.2 bits (64), Expect = 2.1
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)

Query: 4  DRLFPLTVNHRGMMLIISSPSGVGKSTIA 32
          D L P+    +G  + I   SG GK+ + 
Sbjct: 7  DLLLPIG---KGQRIGIFGGSGTGKTVLL 32


>gnl|CDD|29986 cd01120, RecA-like_NTPases, RecA-like NTPases. This family
          includes the NTP binding domain of F1 and V1 H+ATPases,
          DnaB and related helicases as well as bacterial RecA
          and related eukaryotic and archaeal recombinases. This
          group also includes bacterial conjugation proteins and
          related DNA transfer proteins involved in type II and
          type IV secretion..
          Length = 165

 Score = 28.2 bits (62), Expect = 2.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 17 MLIISSPSGVGKSTIARHLL 36
          ++++  P+G GK+T+A  L 
Sbjct: 1  LILVFGPTGSGKTTLALQLA 20


>gnl|CDD|32733 COG2909, MalT, ATP-dependent transcriptional regulator
          [Transcription].
          Length = 894

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 3  RDRLF-PLTVNHRGMMLIISSPSGVGKSTIA 32
          R RL   L   +   +++IS+P+G GK+T+ 
Sbjct: 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLL 54


>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
          component [Inorganic ion transport and metabolism].
          Length = 235

 Score = 28.0 bits (62), Expect = 2.2
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 9  LTVNHRGMMLIISSPSGVGKSTIARHL 35
          L+VN  G  +++  PSG GKST+ R L
Sbjct: 32 LSVN-AGECVVLHGPSGSGKSTLLRSL 57


>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
           [General function prediction only].
          Length = 591

 Score = 27.9 bits (62), Expect = 2.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 2   NRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHL 35
           N  +L+ L     G ++ I  P+G+GKST  + L
Sbjct: 87  NGFKLYRLPTPRPGKVVGILGPNGIGKSTALKIL 120


>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
           and permease components [General function prediction
           only].
          Length = 580

 Score = 27.9 bits (62), Expect = 2.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 15  GMMLIISSPSGVGKSTIARHLL 36
           G  L I  PSG GKST+AR L+
Sbjct: 362 GEALGIIGPSGSGKSTLARLLV 383


>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC.  YjeQ (YloQ in Bacillus subtilis)
           represents a protein family whose members are broadly
           conserved in bacteria and have been shown to be
           essential to the growth of E. coli and B. subtilis.
           Proteins of the YjeQ family contain all sequence motifs
           typical of the vast class of P-loop-containing GTPases,
           but show a circular permutation, with a G4-G1-G3 pattern
           of motifs as opposed to the regular G1-G3-G4 pattern
           seen in most GTPases. All YjeQ family proteins display a
           unique domain architecture, which includes an N-terminal
           OB-fold RNA-binding domain, the central permuted GTPase
           domain, and a zinc knuckle-like C-terminal cysteine
           domain. This domain architecture suggests a role for
           YjeQ as a regulator of translation..
          Length = 287

 Score = 27.8 bits (62), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 14  RGMMLIISSPSGVGKSTIARHLL 36
           +G   ++   SGVGKST+   LL
Sbjct: 160 KGKTSVLVGQSGVGKSTLINALL 182


>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
          transfer from ATP to gluconate. The resulting product
          gluconate-6-phoshate is an important precursor of
          gluconate metabolism. GntK acts as a dimmer composed of
          two identical subunits..
          Length = 150

 Score = 27.9 bits (62), Expect = 2.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 18 LIISSPSGVGKSTIARHL 35
          +++   SG GKST+ + L
Sbjct: 2  IVVMGVSGSGKSTVGKAL 19


>gnl|CDD|36405 KOG1191, KOG1191, KOG1191, Mitochondrial GTPase [Translation,
           ribosomal structure and biogenesis].
          Length = 531

 Score = 27.6 bits (61), Expect = 2.5
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 14  RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTR--VRRPNEVDG 60
            G+ + I     VGKS++   L + D++    +  TTR  +     V+G
Sbjct: 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG 315


>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance
          Protein)-like transporters are involved in drug,
          peptide, and lipid export.  They belong to the
          subfamily C of the ATP-binding cassette (ABC)
          superfamily of transport proteins.  The ABCC subfamily
          contains transporters with a diverse functional
          spectrum that includes ion transport, cell surface
          receptor, and toxin secretion activities.  The MRP-like
          family, simlar to all ABC proteins, have a common
          four-domain core structure constituted by two
          membrane-spanning domains, each composed of six
          transmembrane (TM) helices, and two nucleotide-binding
          domains (NBD).  ABC transporters are a subset of
          nucleotide hydrolases that contain a signature motif,
          Q-loop, and H-loop/switch region, in addition to, the
          Walker A motif/P-loop and Walker B motif commonly found
          in a number of ATP- and GTP-binding and hydrolyzing
          proteins..
          Length = 171

 Score = 27.7 bits (62), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 9  LTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISV 48
          LT+   G  + I  PSG GKST+ + LL+        I +
Sbjct: 23 LTIK-PGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI 61


>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
          system, ATPase component [Amino acid transport and
          metabolism / Inorganic ion transport and metabolism].
          Length = 252

 Score = 27.5 bits (61), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 14 RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISV 48
          RG  L I   SG GKST+AR L   ++    SI +
Sbjct: 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66


>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
          [Inorganic ion transport and metabolism].
          Length = 197

 Score = 27.5 bits (61), Expect = 2.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 11 VNHRGMMLIISSPSGVGKSTIARHL 35
             +G ++  +  SG GKSTIA  L
Sbjct: 19 KGQKGAVIWFTGLSGSGKSTIANAL 43


>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
          ATPase component [Amino acid transport and metabolism].
          Length = 386

 Score = 27.6 bits (61), Expect = 3.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
            G + +I   SG GKST+ R L
Sbjct: 52 EEGEIFVIMGLSGSGKSTLVRLL 74


>gnl|CDD|31682 COG1493, HprK, Serine kinase of the HPr protein, regulates
           carbohydrate metabolism [Signal transduction
           mechanisms].
          Length = 308

 Score = 27.5 bits (61), Expect = 3.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 14  RGMMLIISSPSGVGKSTIARHLLK 37
            G+ ++I+ PSG GKS +A  L+K
Sbjct: 144 FGVGVLITGPSGAGKSELALELIK 167


>gnl|CDD|33845 COG4088, COG4088, Predicted nucleotide kinase [Nucleotide
          transport and metabolism].
          Length = 261

 Score = 27.2 bits (60), Expect = 3.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 16 MMLIISSPSGVGKSTIARHLLK 37
           ++I++   G GK+T A+ L K
Sbjct: 2  PLIILTGYPGSGKTTFAKELAK 23


>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
          division and chromosome partitioning].
          Length = 223

 Score = 27.5 bits (61), Expect = 3.2
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 13 HRGMMLIISSPSGVGKSTIARHLLK 37
           +G  + ++ PSG GKST+ + +  
Sbjct: 26 PKGEFVFLTGPSGAGKSTLLKLIYG 50


>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
          metabolism].
          Length = 222

 Score = 27.5 bits (61), Expect = 3.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 16 MMLIISSPSGVGKSTIARHL 35
          +++ I  P+G GKST+A+ L
Sbjct: 5  IIIAIDGPAGSGKSTVAKIL 24


>gnl|CDD|33725 COG3944, COG3944, Capsular polysaccharide biosynthesis protein
           [Cell envelope biogenesis, outer membrane].
          Length = 226

 Score = 27.5 bits (61), Expect = 3.4
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)

Query: 125 GSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQ-----LRLQNAYSEI-KKWEFYDY 178
            S ++SFF++ PT Q   +++ +          + Q     L+L N Y+EI K     D 
Sbjct: 31  ISAIVSFFVIKPTYQS-STQILVNQSDGDSTNLQFQDVQSSLQLVNTYAEIIKSPAVLDE 89

Query: 179 VLINDDLENSLSILKSVIEV 198
           V+    LE + S L S I V
Sbjct: 90  VVSELGLELTASQLSSKISV 109


>gnl|CDD|32257 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
           and metabolism].
          Length = 299

 Score = 27.2 bits (60), Expect = 3.5
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%)

Query: 14  RGMM----LIISSPSGVGKSTIARHL 35
           R M     ++I   SGVGKSTIA  L
Sbjct: 84  RKMKRPLIILIGGASGVGKSTIAGEL 109


>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that
          is expressed in the mitochondria.  Although the
          specific function of ATM1 is unknown, its disruption
          results in the accumulation of excess mitochondrial
          iron, loss of mitochondrial cytochromes, oxidative
          damage to mitochondrial DNA, and decreased levels of
          cytosolic heme proteins.  ABC transporters are a large
          family of proteins involved in the transport of a wide
          variety of different compounds, like sugars, ions,
          peptides, and more complex organic molecules.  The
          nucleotide binding domain shows the highest similarity
          between all members of the family.  ABC transporters
          are a subset of nucleotide hydrolases that contain a
          signature motif, Q-loop, and H-loop/switch region, in
          addition to, the Walker A motif/P-loop and Walker B
          motif commonly found in a number of ATP- and
          GTP-binding and hydrolyzing proteins..
          Length = 236

 Score = 27.1 bits (60), Expect = 3.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 15 GMMLIISSPSGVGKSTIARHLLK 37
          G  + I  PSG GKSTI R L +
Sbjct: 27 GKKVAIVGPSGSGKSTILRLLFR 49


>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
           component [Amino acid transport and metabolism].
          Length = 268

 Score = 27.1 bits (60), Expect = 3.6
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 14  RGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNE 73
            G  L +   SG GKST+ R +L  ++     I            +GKD     LS+   
Sbjct: 38  EGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL----------FEGKD--ITKLSKEER 85

Query: 74  LKKANAFIEKAEVHGNFYGTLRDPIE 99
            ++    +EK  +   F    R P E
Sbjct: 86  RERVLELLEKVGLPEEFLY--RYPHE 109


>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase
          component [Inorganic ion transport and metabolism].
          Length = 259

 Score = 27.2 bits (60), Expect = 3.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 15 GMMLIISSPSGVGKSTIARHL 35
          G +L I  P+G GKST+ + L
Sbjct: 27 GEVLAILGPNGAGKSTLLKAL 47


>gnl|CDD|37215 KOG2004, KOG2004, KOG2004, Mitochondrial ATP-dependent protease
           PIM1/LON [Posttranslational modification, protein
           turnover, chaperones].
          Length = 906

 Score = 27.2 bits (60), Expect = 3.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 14  RGMMLIISSPSGVGKSTIAR 33
           +G +L    P GVGK++IA+
Sbjct: 437 QGKILCFVGPPGVGKTSIAK 456


>gnl|CDD|73290 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety
          of proteins which share a common ATP-binding domain.
          Functionally, proteins in this superfamily use the
          energy from hydrolysis of NTP to transfer electron or
          ion..
          Length = 99

 Score = 27.0 bits (59), Expect = 3.8
 Identities = 7/18 (38%), Positives = 14/18 (77%)

Query: 18 LIISSPSGVGKSTIARHL 35
          ++++   GVGK+T+A +L
Sbjct: 2  IVVTGKGGVGKTTLAANL 19


>gnl|CDD|146036 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
          protein B.  This protein contains a P-loop.
          Length = 122

 Score = 26.9 bits (60), Expect = 3.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 18 LIISSPSGVGKSTIARHLLK 37
          +++  P   GK+T+ R LL 
Sbjct: 3  VLVVGPKDSGKTTLIRKLLN 22


>gnl|CDD|30990 COG0645, COG0645, Predicted kinase [General function prediction
          only].
          Length = 170

 Score = 27.2 bits (60), Expect = 4.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 15 GMMLIISSPSGVGKSTIARHL 35
          G ++++    G GKST+AR L
Sbjct: 1  GRLVLVGGLPGSGKSTLARGL 21


>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance
          to organic solvents, ATPase component [Secondary
          metabolites biosynthesis, transport, and catabolism].
          Length = 263

 Score = 27.1 bits (60), Expect = 4.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 13 HRGMMLIISSPSGVGKSTIARHLL 36
           RG +L I   SG GKST+ R +L
Sbjct: 32 PRGEILAILGGSGSGKSTLLRLIL 55


>gnl|CDD|73295 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
          superfamily consisting of multiple families of enzymes
          that share structural similarity and are functionally
          related to the catalysis of the reversible phosphate
          group transfer from nucleoside triphosphates to
          nucleosides/nucleotides, nucleoside monophosphates, or
          sugars. Members of this family play a wide variety of
          essential roles in nucleotide metabolism, the
          biosynthesis of coenzymes and aromatic compounds, as
          well as the metabolism of sugar and sulfate..
          Length = 69

 Score = 26.8 bits (59), Expect = 4.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query: 20 ISSPSGVGKSTIARHL 35
          I+  SG GKST+A+ L
Sbjct: 4  ITGGSGSGKSTVAKKL 19


>gnl|CDD|31343 COG1149, COG1149, MinD superfamily P-loop ATPase containing an
          inserted ferredoxin domain [Energy production and
          conversion].
          Length = 284

 Score = 26.8 bits (59), Expect = 4.4
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 19 IISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74
          + S   G GK+T+A +L     +    +     V  PN      +  L +    E 
Sbjct: 6  VASGKGGTGKTTVAANLAVLLGDKYKLVLADCDVEAPN-----LHLLLGVEVLEEE 56


>gnl|CDD|73300 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is
          a homologue of the Fer4_NifH superfamily. Like the
          other members of the superfamily, MRP contains a
          ATP-binding domain at the N-termini. It is found in
          bacteria as a membrane-spanning protein and functions
          as a Na+/H+ antiporter..
          Length = 169

 Score = 27.0 bits (60), Expect = 4.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 18 LIISSPSGVGKSTIARHL 35
           ++S   GVGKST+A +L
Sbjct: 3  AVMSGKGGVGKSTVAVNL 20


>gnl|CDD|32252 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit
           (corrinoid Fe-S protein) [Energy production and
           conversion].
          Length = 403

 Score = 26.9 bits (59), Expect = 4.4
 Identities = 9/45 (20%), Positives = 20/45 (44%)

Query: 111 DIDWQGAQNLHKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQED 155
           D+D++       +    VLS+  +   MQ+  +R  L+    ++ 
Sbjct: 237 DLDYERIAEAALKYDHVVLSWTQMDVNMQKTLNRKLLKRGLPRDR 281


>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
           superfamily [Intracellular trafficking, secretion, and
           vesicular transport].
          Length = 591

 Score = 27.1 bits (60), Expect = 4.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 13  HRGMMLIISSPSGVGKSTIARHLLK 37
            +G  + I   +G GKSTI R LL+
Sbjct: 376 PKGEKVAIVGSNGSGKSTILRLLLR 400


>gnl|CDD|31270 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
          Length = 283

 Score = 26.8 bits (59), Expect = 4.6
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 7   FPLTVNHRGMMLI-ISSPSGVGKSTIAR---HLLKCDQNFEMSISVTT 50
           F  T N +   +I I+    VGKST AR    LL           VT 
Sbjct: 73  FLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTM 120


>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system,
          ATPase component [General function prediction only].
          Length = 223

 Score = 26.9 bits (59), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
            G  + I+ PSG GKST+ + +
Sbjct: 27 RAGEFIAITGPSGCGKSTLLKIV 49


>gnl|CDD|145019 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain.
          This family consists of various cobyrinic acid
          a,c-diamide synthases. These include CbiA and CbiP from
          S.typhimurium, and CobQ from R. capsulatus. These
          amidases catalyse amidations to various side chains of
          hydrogenobyrinic acid or cobyrinic acid a,c-diamide in
          the biosynthesis of cobalamin (vitamin B12) from
          uroporphyrinogen III. Vitamin B12 is an important
          cofactor and an essential nutrient for many plants and
          animals and is primarily produced by bacteria. The
          family also contains dethiobiotin synthetases as well
          as the plasmid partitioning proteins of the MinD/ParA
          family.
          Length = 212

 Score = 26.6 bits (59), Expect = 5.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 24 SGVGKSTIARHLLKC 38
           GVGK+T+A +L + 
Sbjct: 8  GGVGKTTLAANLARA 22


>gnl|CDD|37459 KOG2248, KOG2248, KOG2248, 3'-5' exonuclease [Replication,
           recombination and repair].
          Length = 380

 Score = 26.5 bits (58), Expect = 5.3
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 15/110 (13%)

Query: 125 GSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDD 184
           G  +L  F+ P   + +    +  +   +ED E   + L++   E+ +    + +L+   
Sbjct: 244 GKVILDTFVKP--NKPVVDYNTRYSGITEEDLENSTITLEDVQKELLELISKNTILVGHS 301

Query: 185 LENSLSILK----SVIEVERIRRHR---------LKNGIGGFVGKLLKEE 221
           LEN L  LK    SVI+   + +H          LKN    ++GKL++E 
Sbjct: 302 LENDLKALKLDHPSVIDTAVLFKHPTGPYPFKSSLKNLAKSYLGKLIQEG 351


>gnl|CDD|31354 COG1160, COG1160, Predicted GTPases [General function prediction
           only].
          Length = 444

 Score = 26.7 bits (59), Expect = 5.5
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 19  IISSPSGVGKSTIARHLLKCDQNFEMSISVTTR--VRRPNEVDGKDYYFLSLSRFNELKK 76
           II  P+ VGKS++   +L  ++     I+ TTR  +    E DG+ Y  +  +      K
Sbjct: 183 IIGRPN-VGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241

Query: 77  ANAFIEKAEV 86
               +EK  V
Sbjct: 242 ITESVEKYSV 251


>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
           superfamily [Inorganic ion transport and metabolism].
          Length = 790

 Score = 26.5 bits (58), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 15  GMMLIISSPSGVGKSTIARHLLK 37
           G  + +  PSG GKSTI R L +
Sbjct: 564 GKTVALVGPSGAGKSTIMRLLFR 586


>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
           assembly, permease and ATPase components
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 497

 Score = 26.8 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 15  GMMLIISSPSGVGKSTIARHLLK 37
           G  + I   SG GKSTI R L +
Sbjct: 289 GKTVAIVGESGAGKSTILRLLFR 311


>gnl|CDD|38232 KOG3022, KOG3022, KOG3022, Predicted ATPase, nucleotide-binding
          [Cell cycle control, cell division, chromosome
          partitioning].
          Length = 300

 Score = 26.4 bits (58), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 17 MLIISSPSGVGKSTIARHL 35
          +L++S   GVGKST+  +L
Sbjct: 50 ILVLSGKGGVGKSTVTVNL 68


>gnl|CDD|32119 COG1936, COG1936, Predicted nucleotide kinase (related to CMP and
          AMP kinases) [Nucleotide transport and metabolism].
          Length = 180

 Score = 26.4 bits (58), Expect = 5.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 16 MMLIISSPSGVGKSTIARHL 35
          M++ I+   GVGK+T+ + L
Sbjct: 1  MLIAITGTPGVGKTTVCKLL 20


>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of
          MJ0796 ATP-binding cassette, macrolide-specific
          ABC-type efflux carrier (MacAB), and proteins involved
          in cell division (FtsE), and release of liporoteins
          from the cytoplasmic membrane (LolCDE).  They are
          clustered together phylogenetically.  MacAB is an
          exporter that confers resistance to macrolides, while
          the LolCDE system is not a transporter at all.  An FtsE
          null mutants showed filamentous growth and appeared
          viable on high salt medium only, indicating a role for
          FtsE in cell division and/or salt transport.  The
          LolCDE complex catalyses the release of lipoproteins
          from the cytoplasmic membrane prior to their targeting
          to the outer membrane..
          Length = 218

 Score = 26.6 bits (59), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 13 HRGMMLIISSPSGVGKSTIARHL 35
           +G  + I  PSG GKST+   L
Sbjct: 28 EKGEFVAIVGPSGSGKSTLLNIL 50


>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
           transporter, ABC superfamily [Lipid transport and
           metabolism].
          Length = 728

 Score = 26.5 bits (58), Expect = 6.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 15  GMMLIISSPSGVGKSTIARHL 35
           GM L+I+ P+G GKS++ R L
Sbjct: 508 GMHLLITGPNGCGKSSLFRIL 528


>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
          component [Amino acid transport and metabolism].
          Length = 240

 Score = 26.2 bits (58), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 9  LTVNHRGMMLIISSPSGVGKSTIAR 33
          L+V  +G +++I  PSG GKST+ R
Sbjct: 23 LSVE-KGEVVVIIGPSGSGKSTLLR 46


>gnl|CDD|31047 COG0703, AroK, Shikimate kinase [Amino acid transport and
          metabolism].
          Length = 172

 Score = 26.3 bits (58), Expect = 6.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 14 RGMMLIISSPSGVGKSTIARHLLK 37
          R M +++    G GKSTI R L K
Sbjct: 1  RNMNIVLIGFMGAGKSTIGRALAK 24


>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
          metabolism].
          Length = 179

 Score = 26.4 bits (58), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 16 MMLIISSPSGVGKSTIARHL 35
          M++ IS   G GK+T+AR L
Sbjct: 1  MVITISGLPGSGKTTVAREL 20


>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the
          ATP-binding components of the bacterial periplasmic
          histidine and glutamine permeases, repectively.
          Histidine permease is a multisubunit complex containing
          the HisQ and HisM integral membrane subunits and two
          copies of HisP.  HisP has properties intermediate
          between those of integral and peripheral membrane
          proteins and is accessible from both sides of the
          membrane, presumably by its interaction with HisQ and
          HisM.  The two HisP subunits form a homodimer within
          the complex.  The domain structure of the amino acid
          uptake systems is typical for prokaryote extracellular
          solute binding protein-dependent uptake systems.  All
          of the amino acid uptake systems also have at least
          one, and in a few cases, two extracellular solute
          binding proteins located in the periplasm of
          Gram-negative bacteria, or attached to the cell
          membrane of Gram-positive bacteria.  The best-studied
          member of the PAAT (polar amino acid transport) family
          is the HisJQMP system of S. typhimurium, where HisJ is
          the extracellular solute binding proteins and HisP is
          the ABC protein..
          Length = 213

 Score = 26.2 bits (58), Expect = 6.9
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)

Query: 9  LTVNHRGMMLIISSPSGVGKSTIAR 33
          LTV  +G +++I  PSG GKST+ R
Sbjct: 21 LTVK-KGEVVVIIGPSGSGKSTLLR 44


>gnl|CDD|144432 pfam00833, Ribosomal_S17e, Ribosomal S17. 
          Length = 122

 Score = 26.1 bits (58), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 184 DLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEE 221
           D + +  I     EV  I   RL+N I G+V  L+K  
Sbjct: 27  DFQTNKRICD---EVAIIPSKRLRNKIAGYVTHLMKRI 61


>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase
          component [Amino acid transport and metabolism].
          Length = 242

 Score = 26.1 bits (57), Expect = 7.1
 Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 6  LFPLTVN-HRGMMLIISSPSGVGKSTIAR--HLLKCDQNFEMSIS 47
          LF +T++   G  L++  PSG GKS++ R  +LL+  ++  ++I+
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62


>gnl|CDD|37239 KOG2028, KOG2028, KOG2028, ATPase related to the helicase subunit
           of the Holliday junction resolvase [Replication,
           recombination and repair].
          Length = 554

 Score = 26.2 bits (57), Expect = 7.2
 Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 22/176 (12%)

Query: 18  LIISSPSGVGKSTIARHLLKCDQN---FEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74
           +I+  P G GK+T+AR +    +      + +S T         D +D  F        L
Sbjct: 165 MILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN----AKTNDVRD-IFEQAQNEKSL 219

Query: 75  KKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGA--QNLHKQMGSNVLS-- 130
            K    +   E+H  F  + +D     +  G     DI   GA  +N   Q+ + +LS  
Sbjct: 220 TKRKTILFIDEIH-RFNKSQQDTFLPHVENG-----DITLIGATTENPSFQLNAALLSRC 273

Query: 131 --FFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDD 184
             F +    +  + + L  RA  +  D E+    L N+   ++     DY+    D
Sbjct: 274 RVFVLEKLPVNAVVTILM-RAIASLGDSERPTDPLPNSSMFVED-SIIDYLAYLSD 327


>gnl|CDD|133313 cd04113, Rab4, Rab4 subfamily.  Rab4 has been implicated in
          numerous functions within the cell.  It helps regulate
          endocytosis through the sorting, recycling, and
          degradation of early endosomes. Mammalian Rab4 is
          involved in the regulation of many surface proteins
          including G-protein-coupled receptors, transferrin
          receptor, integrins, and surfactant protein A.
          Experimental data implicate Rab4 in regulation of the
          recycling of internalized receptors back to the plasma
          membrane.  It is also believed to influence
          receptor-mediated antigen processing in B-lymphocytes,
          in calcium-dependent exocytosis in platelets, in
          alpha-amylase secretion in pancreatic cells, and in
          insulin-induced translocation of Glut4 from internal
          vesicles to the cell surface. Rab4 is known to share
          effector proteins with Rab5 and Rab11.  GTPase
          activating proteins (GAPs) interact with GTP-bound Rab
          and accelerate the hydrolysis of GTP to GDP. Guanine
          nucleotide exchange factors (GEFs) interact with
          GDP-bound Rabs to promote the formation of the
          GTP-bound state.  Rabs are further regulated by guanine
          nucleotide dissociation inhibitors (GDIs), which
          facilitate Rab recycling by masking C-terminal lipid
          binding and promoting cytosolic localization.  Most Rab
          GTPases contain a lipid modification site at the
          C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
          binding is essential for membrane attachment, a key
          feature of most Rab proteins.  Due to the presence of
          truncated sequences in this CD, the lipid modification
          site is not available for annotation.
          Length = 161

 Score = 26.1 bits (58), Expect = 7.9
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 18 LIISSPSGVGKSTIARHLLK 37
           II   SG GKS +    ++
Sbjct: 3  FIIIGSSGTGKSCLLHRFVE 22


>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
          nucleotide-binding protein that binds FtsX to form a
          heterodimeric ATP-binding cassette (ABC)-type
          transporter that associates with the bacterial inner
          membrane.  The FtsE/X transporter is thought to be
          involved in cell division and is important for assembly
          or stability of the septal ring..
          Length = 214

 Score = 26.0 bits (57), Expect = 7.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 14 RGMMLIISSPSGVGKSTIARHLLK 37
           G  + +  PSG GKST+ + + K
Sbjct: 26 AGEFVFLVGPSGAGKSTLLKLIYK 49


>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of
          RNase L inhibitor.  The ABC ATPase, RNase L inhibitor
          (RLI), is a key enzyme in ribosomal biogenesis,
          formation of translation preinitiation complexes, and
          assembly of HIV capsids.  RLI s are not transport
          proteins and thus cluster with a group of soluble
          proteins that lack the transmembrane components
          commonly found in other members of the family.
          Structurally, RLIs have an N-terminal Fe-S domain and
          two nucleotide binding domains which are arranged to
          form two composite active sites in their interface
          cleft.  RLI is one of the most conserved enzymes
          between archaea and eukaryotes with a sequence identity
          more than 48%.  The high degree of evolutionary
          conservation suggests that RLI performs a central role
          in archaeal and eukaryotic physiology..
          Length = 255

 Score = 26.0 bits (57), Expect = 7.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 2  NRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHL 35
          N  +L  L V   G +L +  P+G+GKST  + L
Sbjct: 13 NSFKLHRLPVPREGQVLGLVGPNGIGKSTALKIL 46


>gnl|CDD|111395 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain.  This
          domain is found in HypB, a hydrogenase expression /
          formation protein, and UreG a urease accessory protein.
          Both these proteins contain a P-loop nucleotide binding
          motif. HypB has GTPase activity and is a guanine
          nucleotide binding protein. It is not known whether
          UreG binds GTP or some other nucleotide. Both enzymes
          are involved in nickel binding. HypB can store nickel
          and is required for nickel dependent hydrogenase
          expression. UreG is required for functional
          incorporation of the urease nickel metallocenter. GTP
          hydrolysis may required by these proteins for nickel
          incorporation into other nickel proteins. This family
          of domains also contains P47K, a Pseudomonas
          chlororaphis protein needed for nitrile hydratase
          expression, and the cobW gene product, which may be
          involved in cobalamin biosynthesis in Pseudomonas
          denitrificans.
          Length = 174

 Score = 26.0 bits (58), Expect = 8.2
 Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 18 LIISSPSGVGKSTIARHLLKCDQNFEMSISV 48
           +++   G GK+T+  HLL+ D    + I+V
Sbjct: 3  TVLTGFLGSGKTTLLEHLLR-DNREGLKIAV 32


>gnl|CDD|48067 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
           N-terminal DNA binding fragment found in eukaryotic DNA
           topoisomerase (topo) IB. Topo IB proteins include the
           monomeric yeast and human topo I and heterodimeric topo
           I from Leishmania donvanni. Topo I enzymes are divided
           into:  topo type IA (bacterial) and type IB
           (eukaryotic). Topo I relaxes superhelical tension in
           duplex DNA by creating a single-strand nick, the broken
           strand can then rotate around the unbroken strand to
           remove DNA supercoils and, the nick is religated,
           liberating topo I. These enzymes regulate the
           topological changes that accompany DNA replication,
           transcription and other nuclear processes.  Human topo I
           is the target of a diverse set of anticancer drugs
           including camptothecins (CPTs). CPTs bind to the topo
           I-DNA complex and inhibit religation of the
           single-strand nick, resulting in the accumulation of
           topo I-DNA adducts.  In addition to differences in
           structure and some biochemical properties,
           Trypanosomatid parasite topos I differ from human topo I
           in their sensitivity to CPTs and other classical topo I
           inhibitors. Trypanosomatid topos I have putative roles
           in organizing the kinetoplast DNA network unique to
           these parasites.  This family may represent more than
           one structural domain..
          Length = 217

 Score = 26.2 bits (57), Expect = 8.3
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 134 LPPTMQELCSRLSLRAKKNQEDKEKV----------QLRLQNAYSEIKKWEFYDYVLIND 183
           LPP ++E+ +  +     N E KEK                + +    K    D+ LI +
Sbjct: 32  LPPNLEEIATYWAQSMGTNYETKEKFCKNFWKVFVNSFEKDHKFIRRCKLSDADFSLIKN 91

Query: 184 DLEN 187
            LE 
Sbjct: 92  HLEE 95


>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
           a cobalt transport family found in bacteria, archaea,
           and eukaryota.  The transition metal cobalt is an
           essential component of many enzymes and must be
           transported into cells in appropriate amounts when
           needed.  The CbiMNQO family ABC transport system is
           involved in cobalt transport in association with the
           cobalamin (vitamin B12) biosynthetic pathways.  Most
           cobalt (Cbi) transport systems possess a separate CbiN
           component, the cobalt-binding periplasmic protein, and
           they are encoded by the conserved gene cluster cbiMNQO. 
           Both the CbiM and CbiQ proteins are integral cytoplasmic
           membrane proteins, and the CbiO protein has the linker
           peptide and the Walker A and B motifs commonly found in
           the ATPase components of the ABC-type transport
           systems..
          Length = 205

 Score = 26.0 bits (57), Expect = 8.6
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 13  HRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISV-------TTRVRRPNEV-DGKDYY 64
           + G ++ ++  +G GK+T+A+ L    +    SI +         R +    V    DY 
Sbjct: 24  YAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQ 83

Query: 65  FLSLSRFNEL----KKANAFIEKAE 85
             + S   EL    K+ +A  E+AE
Sbjct: 84  LFTDSVREELLLGLKELDAGNEQAE 108


>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component
          of the bacterial CcmAB transporter.  The CCM family is
          involved in bacterial cytochrome c biogenesis.
          Cytochrome c maturation in E. coli requires the ccm
          operon, which encodes eight membrane proteins
          (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone
          that binds heme covalently and transfers it onto
          apocytochrome c in the presence of CcmF, CcmG, and
          CcmH.  The CcmAB proteins represent an ABC transporter
          and the CcmCD proteins participate in heme transfer to
          CcmE..
          Length = 201

 Score = 26.1 bits (57), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 15 GMMLIISSPSGVGKSTIARHL 35
          G  L ++ P+G GK+T+ R L
Sbjct: 26 GEALQVTGPNGSGKTTLLRIL 46


>gnl|CDD|31663 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
          replication, recombination, and repair /
          Posttranslational modification, protein turnover,
          chaperones].
          Length = 366

 Score = 25.7 bits (56), Expect = 9.3
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 4  DRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLK 37
            L P     R   +II  P+G GK+   + +++
Sbjct: 31 SFLAPALRGERPSNIIIYGPTGTGKTATVKFVME 64


>gnl|CDD|35591 KOG0370, KOG0370, KOG0370, Multifunctional pyrimidine synthesis
           protein CAD (includes carbamoyl-phophate synthetase,
           aspartate transcarbamylase, and glutamine
           amidotransferase) [General function prediction only].
          Length = 1435

 Score = 25.7 bits (56), Expect = 9.6
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 168 SEIKKWEFYDYVLINDDLENSLSILKSVIEVERIRR 203
            +I +W+   +  ++ ++    S +KSV EV  I R
Sbjct: 723 VKIPRWDLSKFQRVSTEIG---SSMKSVGEVMAIGR 755


>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
           only].
          Length = 301

 Score = 25.6 bits (56), Expect = 10.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 2   NRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLL 36
           N D L  L     G + ++   SGVGKST+   LL
Sbjct: 151 NGDGLEELAELLAGKITVLLGQSGVGKSTLINALL 185


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.137    0.392 

Gapped
Lambda     K      H
   0.267   0.0657    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,703,250
Number of extensions: 137329
Number of successful extensions: 763
Number of sequences better than 10.0: 1
Number of HSP's gapped: 753
Number of HSP's successfully gapped: 143
Length of query: 222
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,318,927
Effective search space: 570098364
Effective search space used: 570098364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)