BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (222 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score =  458 bits (1179), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MNRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDG 60
           MNRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDG
Sbjct: 1   MNRDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDG 60

Query: 61  KDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL 120
           KDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL
Sbjct: 61  KDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNL 120

Query: 121 HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVL 180
           HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVL
Sbjct: 121 HKQMGSNVLSFFILPPTMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVL 180

Query: 181 INDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEEL 222
           INDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEEL
Sbjct: 181 INDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEEL 222


>gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 186

 Score = 82.0 bits (201), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 66/128 (51%)

Query: 17  MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
           + ++   SGVGK+TIA+ ++   +   M + VTTR  R +E    DY F+S S+F   K 
Sbjct: 4   IFVLIGASGVGKTTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63

Query: 77  ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
              FIE  +V   +YG L++ I   +  G D+L  +  QG   L K     V S FI PP
Sbjct: 64  TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123

Query: 137 TMQELCSR 144
           +  EL  R
Sbjct: 124 SEAELIQR 131


>gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 185

 Score = 80.9 bits (198), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 11/190 (5%)

Query: 17  MLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNELKK 76
           + ++   SGVG++TIA+ ++   +   M + VTTR  R +E    DY F+S S+F   K 
Sbjct: 4   IFVLIGASGVGETTIAKQVVLNSEYLVMPVGVTTRRPRVDEKQYIDYRFISQSQFKGWKH 63

Query: 77  ANAFIEKAEVHGNFYGTLRDPIEETISKGKDMLFDIDWQGAQNLHKQMGSNVLSFFILPP 136
              FIE  +V   +YG L++ I   +  G D+L  +  QG   L K     V S FI PP
Sbjct: 64  TGLFIETTKVRDEYYGYLKEDINNPMEHGYDILLILTHQGLAPLKKLYEDQVTSIFIAPP 123

Query: 137 TMQELCSRLSLRAKKNQEDKEKVQLRLQNAYSEIKKWEFYDYVLINDDLENSLSILKSVI 196
           +  EL  R   R K+ ++    +   L        K   Y + ++N+ L  +   +  + 
Sbjct: 124 SEAELIQR---RIKRREDTPFNLDPDL------FGKNHSYSFTIVNNHLPTACRQVGFIR 174

Query: 197 EVERIRRHRL 206
           E   +++HR+
Sbjct: 175 EF--VKQHRI 182


>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 257

 Score = 28.1 bits (61), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 14 RGMMLIISSPSGVGKSTIAR 33
          RG  +II+ PSG GKST+ R
Sbjct: 42 RGERVIIAGPSGSGKSTLIR 61


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 27.7 bits (60), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 10  TVNHRGMMLIISSPSGVGKSTIARHLLKC 38
            + ++G++L    P GVGK+++A+ + K 
Sbjct: 361 VIKNKGLILCFVGPPGVGKTSLAQSIAKA 389


>gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 185

 Score = 26.6 bits (57), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 163 LQNAYSEIKKWEFYDYVLINDDLENSLSILKSVIEVERIRRHRLKNGIGGFVGKLLKEE 221
           L+N +S   +W  Y Y  +N  L  SLS+  +V  +E +R     +G+  F+  L KEE
Sbjct: 39  LRNQFS---RWSVYVYPDLNKKLCFSLSVPVTVEPLEGVR-----HGVNFFIISLKKEE 89


>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 437

 Score = 25.8 bits (55), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 7/36 (19%)

Query: 3  RDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKC 38
          RD L P     + ++L+   P+GVGK+ I+R L + 
Sbjct: 48 RDELMP-----KNILLV--GPTGVGKTAISRRLARL 76


>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 25.4 bits (54), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)

Query: 7  FPLTVN-----HRGMMLIISSPSGVGKSTI 31
          FP+  N      +G ++ + SPSG GKSTI
Sbjct: 23 FPVLENVHLSLKKGEIVALVSPSGTGKSTI 52


>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 539

 Score = 24.6 bits (52), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 16/71 (22%)

Query: 20  ISSPSGVGKSTIARHLLKCDQNFEMSISVTT----------------RVRRPNEVDGKDY 63
           I  P+G GKSTI R +   D+ +     + T                +  + N ++G  +
Sbjct: 37  ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96

Query: 64  YFLSLSRFNEL 74
               L R+NEL
Sbjct: 97  KQAILDRYNEL 107


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 23.9 bits (50), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 19  IISSPSGVGKSTIARHL 35
           + S P+GVGK+ I++ L
Sbjct: 511 VFSGPTGVGKTEISKQL 527


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 23.5 bits (49), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 15  GMMLIISSPSGVGKSTIARHLLK 37
           G M  +  PSG GKSTI   L++
Sbjct: 379 GKMTALVGPSGSGKSTIINLLMR 401


>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 254

 Score = 23.1 bits (48), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 23 PSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYY 64
          PSG GKST  R L + ++  +  +     +     +DGK+ Y
Sbjct: 40 PSGCGKSTFLRCLNRMNETIDNCVFTGEII-----LDGKNIY 76


>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 440

 Score = 23.1 bits (48), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 15  GMMLIISSPSGVGKSTIARHLLKCDQNFEMSISVTTRVRRPNEVDGKDYYFLSLSRFNEL 74
           G  ++I   S  GKS++   L K D      I  TTR     ++D  + Y + +S    +
Sbjct: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-LEGYLVKISDTAGI 277

Query: 75  KKANAFIEKAEVHGNF 90
           ++ +  +EK  +   F
Sbjct: 278 RETDDIVEKEGIKRTF 293


>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 234

 Score = 22.7 bits (47), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 18 LIISSPSGVGKSTI 31
          ++I  PSG GKST+
Sbjct: 28 IVILGPSGAGKSTL 41


>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 22.3 bits (46), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 14 RGMMLIISSPSGVGKSTIARHL 35
          +G +L++   SG GKST+ R +
Sbjct: 54 KGEILVLMGLSGAGKSTLLRSI 75


>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 837

 Score = 22.3 bits (46), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 15/128 (11%)

Query: 44  MSISVTTRVRRPNEVDGKDYYFLSLSRFNELKKANAFIEKAEVHGNFYGTLRDPIEETIS 103
           MS      VRR       D+Y     R    K  NA      +  N +  L   +++ + 
Sbjct: 311 MSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLD 370

Query: 104 KGKDMLFDIDWQGAQNLHKQMGS--------NVLSFF-----ILPPTMQELCSRLSLRAK 150
             +  L+++ W+  +++  QM S        N+++ +      L  T   LC    L+  
Sbjct: 371 SDQFQLYNLIWK--RSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVW 428

Query: 151 KNQEDKEK 158
           +NQ D+EK
Sbjct: 429 ENQYDQEK 436


>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 597

 Score = 22.3 bits (46), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 24  SGVGKSTIARHLLK 37
           SGVGKST+A+ L +
Sbjct: 392 SGVGKSTVAKLLYR 405


>gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 356

 Score = 21.9 bits (45), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 19  IISSPSGVGKSTIARHLLKC 38
           I+S+ +G+G  T AR+L KC
Sbjct: 82  ILSAWAGLGYYTRARNLKKC 101


>gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 321

 Score = 21.9 bits (45), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 12  NHRGMMLIISSPSGVGKSTIARHLLK 37
           +HR  ++++   +GVGK+T+   L K
Sbjct: 108 SHRPHVILVVGVNGVGKTTVIGKLSK 133


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.137    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,115
Number of Sequences: 1233
Number of extensions: 5743
Number of successful extensions: 42
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 22
length of query: 222
length of database: 328,796
effective HSP length: 71
effective length of query: 151
effective length of database: 241,253
effective search space: 36429203
effective search space used: 36429203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 36 (18.5 bits)