Query gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs 121 out of 1521
Neff 8.2
Searched_HMMs 33803
Date Wed Jun 1 20:18:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764508.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3ca8_A Protein YDCF; two doma 99.9 6.6E-28 2E-32 200.9 8.7 124 61-205 1-145 (151)
2 >3d8u_A PURR transcriptional r 91.5 0.71 2.1E-05 25.0 6.4 96 99-198 9-104 (121)
3 >3egc_A Putative ribose operon 90.6 1.1 3.2E-05 23.8 6.6 95 99-198 8-103 (132)
4 >3kjx_A Transcriptional regula 90.4 1 3E-05 24.0 6.3 95 99-198 8-104 (132)
5 >3gv0_A Transcriptional regula 90.3 0.79 2.3E-05 24.7 5.7 95 99-198 8-103 (132)
6 >2o20_A Catabolite control pro 89.7 1.4 4.1E-05 23.1 7.2 92 100-198 9-101 (130)
7 >3hcw_A Maltose operon transcr 89.5 1.2 3.5E-05 23.5 6.1 96 99-198 8-103 (132)
8 >2d13_A Hypothetical protein P 89.1 1.5 4.6E-05 22.8 7.5 113 65-200 4-120 (124)
9 >3k4h_A Putative transcription 88.1 1.8 5.3E-05 22.4 7.0 95 100-199 9-104 (132)
10 >3g85_A Transcriptional regula 87.9 1.8 5.5E-05 22.3 6.9 94 100-198 9-103 (134)
11 >3k9c_A Transcriptional regula 87.6 1.9 5.7E-05 22.2 8.0 95 99-199 8-102 (130)
12 >3h5o_A Transcriptional regula 87.4 2 5.8E-05 22.2 6.7 95 100-199 9-104 (132)
13 >3g1w_A Sugar ABC transporter; 87.4 2 5.8E-05 22.1 6.2 91 115-205 21-113 (134)
14 >1jye_A Lactose operon repress 86.5 2.2 6.5E-05 21.8 7.2 94 99-199 8-102 (130)
15 >3hjb_A Glucose-6-phosphate is 86.5 2.2 6.5E-05 21.8 6.9 124 61-214 42-174 (186)
16 >3cs3_A Sugar-binding transcri 86.3 1.7 5.1E-05 22.5 5.3 93 101-199 10-102 (130)
17 >2rgy_A Transcriptional regula 86.1 2.3 6.8E-05 21.7 7.5 95 100-199 10-105 (133)
18 >2fqx_A Membrane lipoprotein T 85.9 1.6 4.6E-05 22.8 4.9 94 99-198 11-104 (137)
19 >3brq_A HTH-type transcription 84.1 2.8 8.4E-05 21.1 9.6 102 131-242 40-141 (144)
20 >3dbi_A Sugar-binding transcri 82.2 3.4 9.9E-05 20.6 7.4 93 101-198 11-104 (133)
21 >3brq_A HTH-type transcription 82.2 3.4 9.9E-05 20.6 6.3 93 101-198 11-104 (133)
22 >3ctp_A Periplasmic binding pr 80.9 1.2 3.5E-05 23.6 2.6 93 99-198 8-101 (130)
23 >2fep_A Catabolite control pro 79.3 4.2 0.00012 20.0 7.2 96 99-199 8-105 (133)
24 >1tjy_A Sugar transport protei 78.3 4.5 0.00013 19.8 6.0 85 115-199 23-108 (151)
25 >2cxn_A Glucose-6-phosphate is 77.9 4.6 0.00014 19.7 7.4 123 61-213 42-174 (187)
26 >3i09_A Periplasmic branched-c 77.2 4.8 0.00014 19.6 5.7 71 127-200 31-101 (191)
27 >2h0a_A TTHA0807, transcriptio 77.0 4.9 0.00014 19.6 8.3 94 100-198 8-107 (134)
28 >1dbq_A Purine repressor; tran 76.6 5 0.00015 19.5 9.3 93 101-199 10-104 (132)
29 >1qpz_A PURA, protein (purine 76.6 5 0.00015 19.5 7.8 94 100-199 9-104 (132)
30 >3bq9_A Predicted rossmann fol 73.6 5.5 0.00016 19.2 4.3 35 147-181 163-201 (375)
31 >2e4u_A Metabotropic glutamate 71.3 6.7 0.0002 18.7 7.0 83 127-209 30-112 (177)
32 >3h5t_A Transcriptional regula 70.6 7 0.00021 18.6 6.2 67 132-198 52-119 (146)
33 >3gh1_A Predicted nucleotide-b 68.7 7.6 0.00023 18.3 4.7 36 147-182 168-207 (380)
34 >3huu_A Transcription regulato 68.2 7.8 0.00023 18.2 5.1 91 100-198 9-100 (129)
35 >2vk2_A YTFQ, ABC transporter 68.0 7.9 0.00023 18.2 5.4 67 132-198 40-108 (142)
36 >1gud_A ALBP, D-allose-binding 67.9 7.9 0.00023 18.2 6.3 66 132-198 40-105 (135)
37 >8abp_A L-arabinose-binding pr 65.3 8.9 0.00026 17.9 7.2 98 99-198 12-113 (146)
38 >3gyb_A Transcriptional regula 65.2 8.9 0.00026 17.9 5.9 92 100-199 9-101 (129)
39 >2k1s_A Inner membrane lipopro 63.3 9.7 0.00029 17.6 6.9 65 85-154 41-114 (149)
40 >2hsg_A Glucose-resistance amy 62.9 9.8 0.00029 17.6 8.2 96 99-199 9-106 (134)
41 >2aiz_P Outer membrane protein 62.1 10 0.0003 17.5 5.5 65 86-155 38-111 (134)
42 >1r1m_A Outer membrane protein 61.7 10 0.00031 17.4 5.1 80 67-155 8-96 (164)
43 >3c3k_A Alanine racemase; stru 61.1 11 0.00031 17.4 6.6 94 100-199 9-103 (131)
44 >2zf8_A MOTY, component of sod 61.1 11 0.00031 17.4 4.2 67 86-155 16-90 (124)
45 >2o2c_A GPI, glucose-6-phospha 58.9 12 0.00034 17.1 5.1 123 62-214 26-163 (175)
46 >3e3m_A Transcriptional regula 58.3 12 0.00035 17.1 6.9 96 99-199 8-106 (134)
47 >3jvd_A Transcriptional regula 58.2 12 0.00035 17.1 6.9 88 102-198 11-99 (128)
48 >2iks_A DNA-binding transcript 58.2 12 0.00035 17.1 4.6 93 99-198 8-101 (130)
49 >3kke_A LACI family transcript 58.0 12 0.00035 17.0 7.1 94 100-198 9-108 (137)
50 >3clk_A Transcription regulato 57.9 12 0.00035 17.0 7.8 90 102-198 11-102 (131)
51 >2vsy_A XCC0866; transferase, 55.8 13 0.00038 16.8 6.3 113 65-206 11-123 (179)
52 >3ldt_A Outer membrane protein 55.0 13 0.00039 16.8 3.3 80 67-155 47-135 (169)
53 >3dbi_A Sugar-binding transcri 54.1 14 0.00041 16.6 9.6 101 132-242 83-183 (185)
54 >2nlv_A XISI protein-like; YP_ 54.0 6.3 0.00019 18.9 1.6 23 133-155 79-101 (112)
55 >2nvm_A FDXN element excision 52.6 6.8 0.0002 18.6 1.6 24 133-156 93-116 (126)
56 >3ksm_A ABC-type sugar transpo 52.4 15 0.00043 16.5 6.0 64 132-197 41-105 (136)
57 >3d7q_A XISI protein-like; ZP_ 51.9 6.4 0.00019 18.8 1.3 24 133-156 79-102 (112)
58 >2wu8_A Glucose-6-phosphate is 51.2 15 0.00045 16.3 7.6 125 61-214 46-178 (190)
59 >2nwv_A XISI protein-like; YP_ 49.7 9.7 0.00029 17.6 2.0 24 133-156 81-104 (114)
60 >1tk9_A Phosphoheptose isomera 47.6 17 0.00051 16.0 4.1 100 96-204 31-145 (188)
61 >1xhc_A NADH oxidase /nitrite 45.4 19 0.00055 15.8 4.6 54 69-144 3-56 (87)
62 >3hs3_A Ribose operon represso 45.0 19 0.00056 15.7 5.9 92 98-199 6-98 (126)
63 >1qpz_A PURA, protein (purine 45.0 19 0.00056 15.7 7.0 71 132-206 21-91 (151)
64 >2qu7_A Putative transcription 44.8 19 0.00057 15.7 7.7 95 100-199 9-108 (136)
65 >2zj3_A Glucosamine--fructose- 44.3 19 0.00058 15.7 4.8 43 143-186 61-104 (159)
66 >1uta_A FTSN, MSGA, cell divis 43.9 14 0.0004 16.7 2.0 18 127-144 55-72 (81)
67 >1m32_A 2-aminoethylphosphonat 43.1 20 0.0006 15.5 5.1 64 134-200 72-142 (239)
68 >3fiu_A NH(3)-dependent NAD(+) 42.8 16 0.00048 16.2 2.2 61 64-148 28-88 (249)
69 >1t10_A GPI, glucose-6-phospha 42.1 21 0.00062 15.4 5.2 115 61-205 25-155 (175)
70 >1moq_A Glucosamine 6-phosphat 42.1 21 0.00062 15.4 4.3 32 149-181 67-98 (158)
71 >2bpl_A Glucosamine--fructose- 41.8 21 0.00063 15.4 3.0 17 186-202 81-97 (159)
72 >1byk_A Protein (trehalose ope 41.6 21 0.00063 15.4 8.4 95 99-203 8-107 (125)
73 >2c5s_A THII, probable thiamin 40.2 18 0.00052 15.9 2.1 63 67-153 7-70 (231)
74 >2dri_A D-ribose-binding prote 39.9 23 0.00067 15.2 6.4 98 100-202 9-107 (132)
75 >3can_A Pyruvate-formate lyase 39.6 23 0.00068 15.2 3.3 46 154-199 74-126 (182)
76 >2rjo_A Twin-arginine transloc 39.4 23 0.00068 15.2 6.0 66 132-198 39-105 (135)
77 >1ea0_A Glutamate synthase [NA 37.7 11 0.00033 17.2 0.7 10 161-170 270-279 (412)
78 >3h75_A Periplasmic sugar-bind 37.2 25 0.00074 15.0 7.1 98 100-198 10-109 (142)
79 >2yxz_A Thiamin-monophosphate 36.4 7.1 0.00021 18.5 -0.4 135 64-205 3-146 (165)
80 >3hut_A Putative branched-chai 35.2 27 0.00079 14.7 4.5 74 128-205 30-104 (119)
81 >1ad1_A DHPS, dihydropteroate 34.8 27 0.00081 14.7 4.3 39 133-171 148-189 (266)
82 >2hqs_H Peptidoglycan-associat 34.1 28 0.00083 14.6 6.3 64 87-155 15-87 (118)
83 >3brs_A Periplasmic binding pr 33.0 29 0.00086 14.5 5.6 65 132-198 39-103 (133)
84 >1zzg_A Glucose-6-phosphate is 32.5 30 0.00088 14.5 6.8 75 131-206 61-142 (162)
85 >1gpm_A GMP synthetase, XMP am 32.0 30 0.00089 14.4 3.8 59 65-146 23-82 (200)
86 >1bed_A DSBA oxidoreductase; T 31.5 31 0.00091 14.4 5.5 78 93-173 6-83 (84)
87 >2yrr_A Aminotransferase, clas 30.8 32 0.00094 14.3 7.0 14 159-172 124-137 (234)
88 >2dpl_A GMP synthetase, GMP sy 30.6 32 0.00094 14.3 4.4 60 65-146 20-79 (189)
89 >2ioj_A Hypothetical protein A 30.5 29 0.00086 14.5 1.9 43 115-168 77-119 (139)
90 >1jqn_A Pepcase, PEPC, phospho 30.0 33 0.00097 14.2 9.4 105 121-237 187-301 (420)
91 >1acv_A DSBA; disulfide oxidor 29.9 33 0.00097 14.2 5.7 77 93-173 7-83 (84)
92 >1dbq_A Purine repressor; tran 29.2 34 0.001 14.1 8.2 73 131-207 26-98 (157)
93 >3a1c_A Probable copper-export 28.8 34 0.001 14.1 3.1 16 173-188 102-117 (165)
94 >3ef6_A Toluene 1,2-dioxygenas 28.8 34 0.001 14.1 3.6 58 65-144 25-84 (120)
95 >3ce9_A Glycerol dehydrogenase 28.4 35 0.001 14.0 4.1 86 115-206 37-122 (162)
96 >1mkz_A Molybdenum cofactor bi 28.0 35 0.001 14.0 4.0 12 132-143 31-42 (172)
97 >3h75_A Periplasmic sugar-bind 28.0 35 0.001 14.0 6.8 75 129-206 21-96 (208)
98 >1b0z_A Protein (phosphoglucos 27.5 36 0.0011 13.9 6.1 74 131-206 72-154 (174)
99 >1xng_A NH(3)-dependent NAD(+) 27.2 36 0.0011 13.9 6.5 65 64-151 24-88 (132)
100 >3e61_A Putative transcription 27.2 36 0.0011 13.9 6.3 89 98-198 12-102 (131)
101 >3gnh_A L-lysine, L-arginine c 26.9 37 0.0011 13.9 6.0 89 104-198 63-163 (186)
102 >2h5n_A Hypothetical protein P 26.6 37 0.0011 13.8 2.4 67 89-167 10-76 (133)
103 >2gag_B Heterotetrameric sarco 26.3 38 0.0011 13.8 6.3 47 95-144 32-78 (199)
104 >3ff1_A Glucose-6-phosphate is 25.8 39 0.0011 13.7 4.9 74 131-205 71-152 (173)
105 >1un2_A DSBA, thiol-disulfide 25.7 39 0.0011 13.7 5.6 66 129-198 4-69 (86)
106 >3bbl_A Regulatory protein of 25.7 39 0.0011 13.7 9.6 97 98-199 115-214 (287)
107 >1jqo_A Phosphoenolpyruvate ca 25.6 39 0.0011 13.7 9.2 101 124-236 194-304 (424)
108 >3jy6_A Transcriptional regula 25.5 39 0.0012 13.7 2.7 49 151-199 53-101 (117)
109 >3gg8_A Pyruvate kinase; malar 25.1 40 0.0012 13.6 5.3 64 111-185 57-123 (138)
110 >3d02_A Putative LACI-type tra 25.1 40 0.0012 13.6 5.9 67 132-198 39-106 (149)
111 >2cdu_A NADPH oxidase; flavoen 25.1 40 0.0012 13.6 6.5 58 65-144 25-84 (120)
112 >3g3e_A D-amino-acid oxidase; 25.0 40 0.0012 13.6 3.7 34 68-119 2-35 (153)
113 >3khn_A MOTB protein, putative 25.0 40 0.0012 13.6 6.2 80 68-155 45-137 (174)
114 >3i45_A Twin-arginine transloc 24.4 41 0.0012 13.6 4.3 71 127-198 31-101 (200)
115 >2r6h_A NADH:ubiquinone oxidor 24.2 41 0.0012 13.5 2.0 20 132-151 117-136 (139)
116 >1vim_A Hypothetical protein A 23.9 42 0.0012 13.5 3.7 56 131-188 62-131 (200)
117 >3kgw_A Alanine-glyoxylate ami 23.8 42 0.0012 13.5 4.9 65 133-201 40-111 (187)
118 >1gte_A Dihydropyrimidine dehy 23.8 41 0.0012 13.5 1.7 13 131-143 195-207 (280)
119 >3kg2_A Glutamate receptor 2; 23.5 43 0.0013 13.4 2.2 73 126-198 25-98 (189)
120 >2wns_A Orotate phosphoribosyl 23.4 28 0.00083 14.6 0.8 59 144-202 72-130 (133)
121 >2hqb_A Transcriptional activa 22.8 44 0.0013 13.4 5.7 75 132-208 33-107 (120)
122 >2fn9_A Ribose ABC transporter 22.7 44 0.0013 13.3 6.9 68 132-201 45-113 (140)
123 >2ioy_A Periplasmic sugar-bind 22.6 44 0.0013 13.3 7.3 70 132-202 39-108 (133)
124 >2prs_A High-affinity zinc upt 22.6 44 0.0013 13.3 2.4 65 137-202 15-80 (112)
125 >2gqw_A Ferredoxin reductase; 22.4 45 0.0013 13.3 7.3 59 64-144 24-84 (116)
126 >3epr_A Hydrolase, haloacid de 22.2 45 0.0013 13.3 2.6 81 115-207 40-121 (154)
127 >3l6u_A ABC-type sugar transpo 22.0 45 0.0013 13.3 7.1 94 102-200 16-111 (138)
128 >2wjw_A Glutamate receptor 2; 22.0 45 0.0013 13.3 5.1 73 126-198 26-99 (181)
129 >3iru_A Phoshonoacetaldehyde h 22.0 29 0.00085 14.6 0.6 82 116-208 45-132 (172)
130 >2is6_A DNA helicase II; hydro 21.9 46 0.0014 13.2 4.9 39 175-214 133-175 (201)
131 >1yqz_A Coenzyme A disulfide r 21.7 46 0.0014 13.2 6.3 57 66-144 26-83 (115)
132 >2i2w_A Phosphoheptose isomera 21.6 46 0.0014 13.2 3.0 10 66-75 64-73 (212)
133 >2fvy_A D-galactose-binding pe 21.4 47 0.0014 13.2 4.7 66 132-198 48-116 (145)
134 >2an1_A Putative kinase; struc 21.4 47 0.0014 13.2 2.3 38 173-210 64-101 (138)
135 >1tx2_A DHPS, dihydropteroate 21.4 47 0.0014 13.2 5.4 32 138-169 191-225 (297)
136 >1x60_A Sporulation-specific N 21.3 47 0.0014 13.2 3.5 16 129-144 57-72 (79)
137 >2c6q_A GMP reductase 2; TIM b 21.1 48 0.0014 13.1 2.1 30 177-206 191-220 (249)
138 >1yt5_A Inorganic polyphosphat 20.8 48 0.0014 13.1 2.1 17 58-74 34-50 (78)
139 >1i60_A IOLI protein; beta bar 20.8 48 0.0014 13.1 6.4 95 92-193 81-186 (278)
140 >3jpw_A Glutamate [NMDA] recep 20.6 49 0.0014 13.1 2.1 68 131-198 35-102 (172)
141 >2b8n_A Glycerate kinase, puta 20.5 49 0.0014 13.1 3.4 84 69-161 90-180 (202)
142 >2vug_A PAB1020; RNA, ligase, 20.0 26 0.00077 14.8 0.1 22 133-154 15-37 (76)
No 1
>>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genomics, structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli K12} (A:32-182)
Probab=99.95 E-value=6.6e-28 Score=200.88 Aligned_cols=124 Identities=17% Similarity=0.213 Sum_probs=107.5
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC------------------C
Q ss_conf 5456875899962521377776555434682058999999999982520057533897068------------------8
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGG------------------D 122 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg------------------~ 122 (242)
++++++|+|||||||.. .|...|+++|+++.++. ++++|+ .
T Consensus 1 d~~~~~d~ivVLG~~~~-----------------~r~~~a~~l~~~~~a~~----i~~~g~~~~~~~~~~~~~~~~~~~~ 59 (151)
T 3ca8_A 1 EVPYQADCVILAGNAVM-----------------PTIDAACKIARDQQIPL----LISGGIGHSTTFLYSAIAQHPHYNT 59 (151)
T ss_dssp TCCCCCSEEEEESCCCH-----------------HHHHHHHHHHHHHTCCE----EEECCSSTTHHHHHHHHHTCTTGGG
T ss_pred CCCCCCCEEEEECCCCH-----------------HHHHHHHHHHHHCCCCE----EEECCCCCCCCHHHHHHHCCCCCCC
T ss_conf 77889898998189841-----------------88999999998359888----9617987454104444312666666
Q ss_pred CCCCCCCHHHHHHHHHHHC-CCCHHHHHCCHHHHHHHHHHHHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8877888279999999974-999878111101466577799999997623--6864088534588999999999769818
Q gi|255764508|r 123 PQKHGLAESIVYNNKLLES-GVERDDIKLETQSLDTFQNAQFSSSMIKNM--QGKNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 123 ~~~~~~~Ea~~m~~~l~~~-Gv~~~~I~~e~~s~nT~ena~~~~~il~~~--~~~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
..+++.+||+.|+++|+++ |||+++|++|++|+||+||+.+++++++++ ++++++||||+|||+||+++|+++|+++
T Consensus 60 ~~~~~~sEA~~m~~~l~~~~Gvp~~~I~~e~~s~~T~eNa~~~~~~l~~~~~~~~~iilVTs~~H~~Ra~~~~~~~~~~~ 139 (151)
T 3ca8_A 60 IRTTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTMATFRRMTGDN 139 (151)
T ss_dssp SCCTTSCHHHHHHHHHHHTTCCCGGGEEEECCCCSHHHHHHHHHHHHHTCSSCCSCEEEECCTTTHHHHHHHHHHHHCCC
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCC
T ss_conf 78899889999999999964998999552788778899999999999963999887999898888999999999975767
Q ss_pred EEEECC
Q ss_conf 998426
Q gi|255764508|r 200 KASCSD 205 (242)
Q Consensus 200 ~p~~~d 205 (242)
.|+|++
T Consensus 140 ~~~~~~ 145 (151)
T 3ca8_A 140 PDAPRW 145 (151)
T ss_dssp TTSCSE
T ss_pred CCCCCE
T ss_conf 777402
No 2
>>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} (A:103-223)
Probab=91.46 E-value=0.71 Score=25.01 Aligned_cols=96 Identities=8% Similarity=-0.020 Sum_probs=66.2
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999982520057533897068888778882799999999749998781111014665777999999976236864088
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
.+-.|+.+|..+ ..+++|..........-+.+.+.+.+.|.+...++......+..+......+++...+..+.++
T Consensus 9 a~~~L~~~G~~~----i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~ 84 (121)
T 3d8u_A 9 CTRHLIEQGFKN----VGFIGARGNHSTLQRQLHGWQSAXIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV 84 (121)
T ss_dssp HHHHHHTTTCCC----EEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHCCCCE----EEECCCCCCCCHHHHCCHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999887514623----6411357653012210001355554227766400012357522268899998765237860787
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
++++.+..-++..+++.|++
T Consensus 85 ~~~d~~a~~~l~~l~~~g~~ 104 (121)
T 3d8u_A 85 CSHEEIAIGALFECHRRVLK 104 (121)
T ss_dssp ESSHHHHHHHHHHHHHTTCC
T ss_pred EEHHHHHHHHHHHHHHCCCC
T ss_conf 50277776666655421332
No 3
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240)
Probab=90.56 E-value=1.1 Score=23.82 Aligned_cols=95 Identities=8% Similarity=0.018 Sum_probs=64.2
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCC-CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 999999825200575338970688887788-8279999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGL-AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|+++|..+ |.+-++....... .--...++.+.+.|++.+.........+..+......+++.+....+.+
T Consensus 8 a~~~L~~~G~r~-----i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai 82 (132)
T 3egc_A 8 AVEYLIARGHTR-----IGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTAL 82 (132)
T ss_dssp HHHHHHHTTCCS-----EEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEE
T ss_pred HHHHHHHCCCCE-----EEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 899999769955-----866127721220335558999999983998543013247752677899999998547886302
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+|+.-...++..+++.|++
T Consensus 83 ~~~~d~~a~~~~~~l~~~g~~ 103 (132)
T 3egc_A 83 LTSSHRITEGAMQALNVLGLR 103 (132)
T ss_dssp EESSHHHHHHHHHHHHHHTCC
T ss_pred HCCCCCCCCCCEEHHHCCCCC
T ss_conf 202320024513122205985
No 4
>>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} (A:169-300)
Probab=90.43 E-value=1 Score=24.00 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=61.3
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99999982520057533897068888778882--7999999997499987811110146657779999999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
.+-.|+++|..+ |.+=|+........+ -+..++.+.+.|++.+.........+-........+.+........
T Consensus 8 a~~~L~~~G~r~-----I~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 82 (132)
T 3kjx_A 8 XAQAILKAGYRR-----IGFXGTKXPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREXTQAXLERSPDLDF 82 (132)
T ss_dssp HHHHHHHHTCCS-----CCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCE
T ss_pred HHHHHHHCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEE
T ss_conf 999999839986-----410066665562167788888989997298632110001132212331102232025654124
Q ss_pred EEECCHHHHHHHHHHHHHCCCE
Q ss_conf 8853458899999999976981
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
++.+++.....++..+++.|++
T Consensus 83 i~~~~d~~a~~~l~~l~~~gi~ 104 (132)
T 3kjx_A 83 LYYSNDXIAAGGLLYLLEQGID 104 (132)
T ss_dssp EEESSHHHHHHHHHHHHHTTCC
T ss_pred EECCCCHHHHHHHHHHHHCCCC
T ss_conf 5326721567899999986998
No 5
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242)
Probab=90.28 E-value=0.79 Score=24.71 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=65.1
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCC-CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 999999825200575338970688887788-8279999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGL-AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|+++|.. +|.+-|+....... ..-+...+.+.+.|++.+.........++.+......++++..+....+
T Consensus 8 ~~~~l~~~G~~-----~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai 82 (132)
T 3gv0_A 8 AVERLAQCGRK-----RIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLXQSSDRPDGI 82 (132)
T ss_dssp HHHHHHHTTCC-----EEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEE
T ss_pred HHHHHHHCCCC-----CEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 77776312534-----0368717743322566678889999986311003330343211135778887654303577400
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+++++..+.+++...++.|+.
T Consensus 83 ~~~~d~~a~~~~~~l~~~g~~ 103 (132)
T 3gv0_A 83 VSISGSSTIALVAGFEAAGVK 103 (132)
T ss_dssp EESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCC
T ss_conf 113478888778887633301
No 6
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293)
Probab=89.73 E-value=1.4 Score=23.13 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=58.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|.++|.. +|.+=|+........+ -+..++.+.+.|++.+.+...+...+............. ...+.++
T Consensus 9 ~~~L~~~G~r-----~I~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~aii 81 (130)
T 2o20_A 9 TKKLIDSGNK-----KIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLE--RGATSAV 81 (130)
T ss_dssp HHHHHHTTCS-----SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHH--TTCCEEE
T ss_pred HHHHHHHCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHH--HCCCCEE
T ss_conf 9999871887-----64433478778219999999999999849998855699556247777999999864--0345200
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
++++.+...++..+++.|+.
T Consensus 82 ~~~~~~a~~~~~~l~~~g~~ 101 (130)
T 2o20_A 82 VSHDTVAVGLLSAMMDKGVK 101 (130)
T ss_dssp ESCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHCCC
T ss_conf 13556555543899982898
No 7
>>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:115-246)
Probab=89.47 E-value=1.2 Score=23.54 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=60.1
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999982520057533897068888778882799999999749998781111014665777999999976236864088
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
.+-.|.++|..+ -.++++.........--+...+.+.+.|++.+.........+-.+......+++...+....++
T Consensus 8 a~~~L~~~G~~~----i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~ 83 (132)
T 3hcw_A 8 LTRHVIEQGVDE----LIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAII 83 (132)
T ss_dssp HHHHHHHHCCSE----EEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE
T ss_pred HHHHHHCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 888752013223----3224555432014555688999998749851101145540356666555543203577764222
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
++|+.....++..+++.|+.
T Consensus 84 ~~~d~~a~~~~~~l~~~g~~ 103 (132)
T 3hcw_A 84 SLDAMLHLAILSVLYELNIE 103 (132)
T ss_dssp ESSHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHCCCC
T ss_conf 22201333335544203322
No 8
>>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Pyrococcus horikoshii} (A:1-124)
Probab=89.05 E-value=1.5 Score=22.81 Aligned_cols=113 Identities=10% Similarity=0.123 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC--CCCHHHHHHHHHHHCC
Q ss_conf 87589996252137777655543468205899999999998252005753389706888877--8882799999999749
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKH--GLAESIVYNNKLLESG 142 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~--~~~Ea~~m~~~l~~~G 142 (242)
+..++|.++||. |-...+..+.+.|..-. .-.+.-|-..... .-.+.+..+++....|
T Consensus 4 ~~kv~v~~SGG~------------------DS~~~l~ll~~~g~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 63 (124)
T 2d13_A 4 LADVAVLYSGGK------------------DSNYALYWALKSGLRVR--YLVSMVSENEESYMYHTPNVELTSLQARALG 63 (124)
T ss_dssp SCEEEEECCSSH------------------HHHHHHHHHHHTTCEEE--EEEEEECCC---------CCTTHHHHHHHHT
T ss_pred CCCEEEEECCCH------------------HHHHHHHHHHHCCCEEE--EEEEEECCCCCCEECCCCCHHHHHHHHHHCC
T ss_conf 241999916869------------------99999999998598279--9999872889956054778999999998759
Q ss_pred CCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE--ECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 998781111014665777999999976236864088--5345889999999997698189
Q gi|255764508|r 143 VERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL--VSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 143 v~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil--VTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
++-..+-.++...+.+.... +...+++.+.+.. +-+..++...+..+++.|++.+
T Consensus 64 i~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~l 120 (124)
T 2d13_A 64 IPIIKGFTKGEKEKEVEDLK---NVLEGLKVDGIVAGALASRYQKERIENVARELGLKVY 120 (124)
T ss_dssp CCEEEEEC--CTTSHHHHHH---HHHHTBCCSEEECCCSSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEECCCCCCHHHHHHH---HHHHHHCCCEEEECCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 99336624687228999999---9999618865998200117889999988987296898
No 9
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:115-246)
Probab=88.13 E-value=1.8 Score=22.42 Aligned_cols=95 Identities=9% Similarity=-0.039 Sum_probs=58.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 999998252005753389706888877-8882799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKH-GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~-~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|.++|..+ |.+=++..... ....-+..++.+.+.|++.+.........+..+-....+.++...+....++
T Consensus 9 ~~~L~~~G~~~-----i~~i~~~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii 83 (132)
T 3k4h_A 9 AEYLISLGHKQ-----IAFIGGGSDLLVTRDRLAGXSDALKLADIVLPKEYILHFDFSRESGQQAVEELXGLQQPPTAIX 83 (132)
T ss_dssp HHHHHHTTCCC-----EEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHHHCCCE-----EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 77776531540-----6999437775066655455411034302466520022333222479999999994699997897
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++|......++...+..|+.+
T Consensus 84 ~~~d~~a~~~~~~l~~~g~~i 104 (132)
T 3k4h_A 84 ATDDLIGLGVLSALSKKGFVV 104 (132)
T ss_dssp ESSHHHHHHHHHHHHHTTCCT
T ss_pred ECCCCCCCHHHHHHHHCCCCC
T ss_conf 458521100279999808877
No 10
>>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} (A:111-244)
Probab=87.85 E-value=1.8 Score=22.31 Aligned_cols=94 Identities=5% Similarity=0.001 Sum_probs=62.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|.++|.. +|.+=||........+ -+..++.+.+.|++.+.+.......+..+......++++.......++
T Consensus 9 ~~~L~~~G~r-----~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~ 83 (134)
T 3g85_A 9 SLLFAKKRYK-----SAAAILTESLNDAXDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLXKLKNTPKALF 83 (134)
T ss_dssp HHHHHHTTCC-----BCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE
T ss_pred HHHHHCCCCC-----CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 5433102222-----22223566442177777765410111012234422001024220156778887765046542244
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
++++.....++...++.|++
T Consensus 84 ~~~d~~a~~~~~~l~~~g~~ 103 (134)
T 3g85_A 84 CNSDSIALGVISVLNKRQIS 103 (134)
T ss_dssp ESSHHHHHHHHHHHHHTTCC
T ss_pred EECCCCCCHHHHHHHHCCCC
T ss_conf 20222330156776401135
No 11
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239)
Probab=87.58 E-value=1.9 Score=22.21 Aligned_cols=95 Identities=8% Similarity=0.028 Sum_probs=61.4
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999982520057533897068888778882799999999749998781111014665777999999976236864088
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
.+-.|.++|.. +|.+-|+.........-+..++.+.+.|.+.+. .....+.+..+......+++..++....++
T Consensus 8 a~~~L~~~G~r-----~i~~i~~~~~~~~~~r~~g~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~ 81 (130)
T 3k9c_A 8 AVDHLTELGHR-----NIAHIDGADAPGGADRRAGFLAAXDRHGLSASA-TVVTGGTTETEGAEGXHTLLEXPTPPTAVV 81 (130)
T ss_dssp HHHHHHHTTCC-----SEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGE-EEECCCSSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHEECCCCC-----CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 12210002353-----112101224653125778898888763255421-223456641367889999875035751332
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++++.....++..+++.|+.+
T Consensus 82 ~~~d~~a~~~~~~l~~~g~~i 102 (130)
T 3k9c_A 82 AFNDRCATGVLDLLVRSGRDV 102 (130)
T ss_dssp ESSHHHHHHHHHHHHHTTCCT
T ss_pred CCCHHHCCCCEEECCCCCCEE
T ss_conf 141021144200001468445
No 12
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293)
Probab=87.44 E-value=2 Score=22.16 Aligned_cols=95 Identities=14% Similarity=0.065 Sum_probs=61.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 999998252005753389706888877888279999999974999878-1111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDD-IKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~-I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|.++|.. +|.+-|+........--+..++.+.+.|++.+. .+.+....+........++++...+....++
T Consensus 9 ~~~L~~~G~r-----~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~ 83 (132)
T 3h5o_A 9 TRHLLSRGKR-----RIGFLGAQLDERVXKRLDGYRAALDAADCRDAGLEWLDPQPSSXQXGADXLDRALAERPDCDALF 83 (132)
T ss_dssp HHHHHHTTCC-----SEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHCCCC-----EEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999975997-----08786402665422000256777763045543100002462367789999999995499983899
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.+++.-..-++..+++.|+.+
T Consensus 84 ~~~d~~a~~~~~~l~~~g~~v 104 (132)
T 3h5o_A 84 CCNDDLAIGALARSQQLGIAV 104 (132)
T ss_dssp ESSHHHHHHHHHHHHHTTCCT
T ss_pred ECCCHHHHHHHHHHHHCCCCC
T ss_conf 726456665434687639988
No 13
>>3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} (A:109-242)
Probab=87.38 E-value=2 Score=22.13 Aligned_cols=91 Identities=9% Similarity=-0.013 Sum_probs=57.5
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 38970688887788827999999997499987811110146657779999999762368640885345889999999997
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQH 194 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~ 194 (242)
+|.+-||........-.+..++.+.+.|.+.+.+...+...+..+.......++.+++.-+.++.+++-....+...++.
T Consensus 21 ~i~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~ 100 (134)
T 3g1w_A 21 EVAVITLPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRL 100 (134)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 19999312431289999999999987577663145751665358899999987403899888997774899999999997
Q ss_pred CCCE--EEEEECC
Q ss_conf 6981--8998426
Q gi|255764508|r 195 FGIN--TKASCSD 205 (242)
Q Consensus 195 ~gi~--~~p~~~d 205 (242)
.|+. +.-+..|
T Consensus 101 ~g~~~di~i~g~d 113 (134)
T 3g1w_A 101 ESRAGEIQIISFD 113 (134)
T ss_dssp TTCTTTSEEEEES
T ss_pred CCCCCCEEEEEEC
T ss_conf 6999983999978
No 14
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292)
Probab=86.52 E-value=2.2 Score=21.83 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=60.6
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999998252005753389706888877-888279999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKH-GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~-~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|+++|..+ |.+=|+..... ...-.+..++.+.+.|++.+.+...+.+.+...++. ..++......+.+
T Consensus 8 a~~~l~~~G~r~-----I~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ai 80 (130)
T 1jye_A 8 GVEHLVALGHQQ-----IALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQT--MQMLNEGIVPTAM 80 (130)
T ss_dssp HHHHHHHHTCCS-----EEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCSSHHHHHHHH--HHHHHTTCCCSEE
T ss_pred HHHHHHHCCCCE-----EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH--HHHHHCCCCCCEE
T ss_conf 999999759966-----999947743228999999999999975998643434775177799999--9997359998368
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+++|+.....++..++..|+.+
T Consensus 81 ~~~~d~~a~~~l~~l~~~g~~i 102 (130)
T 1jye_A 81 LVANDQMALGAMRAITESGLRV 102 (130)
T ss_dssp EESSHHHHHHHHHHHHHTTCCB
T ss_pred EECCHHHHHHHHHHHHHHCCCC
T ss_conf 7488899999999999808978
No 15
>>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: PG4; 1.50A {Vibrio cholerae} (A:126-311)
Probab=86.45 E-value=2.2 Score=21.81 Aligned_cols=124 Identities=13% Similarity=0.019 Sum_probs=67.0
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 54568758999625213777765554346820589999999999825200575338970688887788827999999997
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
...++.+.||++|-|-.. ...|.. +..........++.+-.. ...+.+.+.+.+
T Consensus 42 ~~~~~~~~vv~iGiGGS~--------------LG~~a~-----~~al~~~~~~~~i~f~dn-------~Dp~~~~~~l~~ 95 (186)
T 3hjb_A 42 FTGKAITDVVNIGIGGSD--------------LGPYMV-----TEALVPYKNHLTVHFVSN-------VDGTHMAETLKN 95 (186)
T ss_dssp TTSCBCCEEEEECCGGGT--------------HHHHHH-----HHHTGGGCCSCEEEEECC-------SSHHHHHHHHTT
T ss_pred CCCCCCCEEEEECCHHHH--------------HHHHHH-----HHHHHHCCCCCEEECCCC-------CCHHHHHHHHHC
T ss_conf 668856638997172768--------------999999-----998740034750540699-------998999999844
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHH---HHHHHHHCCC------CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 49998781111014665777999---9999762368------64088534588999999999769818998426644311
Q gi|255764508|r 141 SGVERDDIKLETQSLDTFQNAQF---SSSMIKNMQG------KNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAYY 211 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s~nT~ena~~---~~~il~~~~~------~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~~ 211 (242)
..-.+.-++.-.||-+|.|.+.+ .++++++.+. ++++.||++--..+ .+.+.+..+.+.|.+ ..+.+
T Consensus 96 l~~~~tlviviSKSG~T~ET~~~~~~~~~~l~~~~~~~~~~~~~~vaiT~~~~~~~---~~~~~~~~~f~~~~~-VGGRf 171 (186)
T 3hjb_A 96 VDPETTLFLVASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNGKAVA---EFGIDTDNMFEFWDW-VGGRY 171 (186)
T ss_dssp CCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCSGGGGGGTEEEESSCHHHHH---HHTCCGGGEECCCTT-SCGGG
T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCHHHHH---HHCCCCCCCCCCCCC-CCCCC
T ss_conf 89652799997388886334789999999999734877766666000346578898---715253354136765-56530
Q ss_pred CCC
Q ss_conf 137
Q gi|255764508|r 212 SII 214 (242)
Q Consensus 212 ~~~ 214 (242)
+.+
T Consensus 172 Svl 174 (186)
T 3hjb_A 172 SLW 174 (186)
T ss_dssp CTT
T ss_pred CCC
T ss_conf 013
No 16
>>3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} (A:102-231)
Probab=86.27 E-value=1.7 Score=22.48 Aligned_cols=93 Identities=9% Similarity=0.049 Sum_probs=57.7
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 99998252005753389706888877888279999999974999878111101466577799999997623686408853
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVS 180 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVT 180 (242)
-.|.++|..+ -.+++|.........--...++.+.+.|++.+.+.......+....+.. .++...+....++++
T Consensus 10 ~~L~~~G~r~----i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aii~~ 83 (130)
T 3cs3_A 10 EQFVNVGSKK----VLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPSGYAAAKK--ILSQPQTEPVDVFAF 83 (130)
T ss_dssp HHHHHTTCSC----EEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHHHHHHHHH--HTTSCCCSSEEEEES
T ss_pred HHCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH--HHHCCCCCCEEEEEC
T ss_conf 2101222345----4334578666233432268999999849974134124526778887777--641368986278752
Q ss_pred CHHHHHHHHHHHHHCCCEE
Q ss_conf 4588999999999769818
Q gi|255764508|r 181 SAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 181 sa~Hm~RA~~~f~~~gi~~ 199 (242)
|.......+..+++.|+.+
T Consensus 84 ~d~~a~~~l~~l~~~g~~v 102 (130)
T 3cs3_A 84 NDEMAIGVYKYVAETNYQM 102 (130)
T ss_dssp SHHHHHHHHHHHTTSSCCB
T ss_pred HHHHCCCCCCCCCCCCCCC
T ss_conf 2454045300242334457
No 17
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=86.09 E-value=2.3 Score=21.69 Aligned_cols=95 Identities=12% Similarity=0.178 Sum_probs=59.7
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778-882799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~-~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|+++|..+ |.+-++...... ..-.+..++.+.+.|++.+.........+-........+++...+....++
T Consensus 10 ~~~L~~~G~~~-----i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~ 84 (133)
T 2rgy_A 10 AATLIEHGHRK-----LAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF 84 (133)
T ss_dssp HHHHHHTTCCS-----EEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHCCC-----CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 45676530011-----0002467554431111213678998728864312122345678889999865301356875343
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+++.......+...+..|+++
T Consensus 85 ~~~d~~a~~~~~~l~~~g~~v 105 (133)
T 2rgy_A 85 CANDTXAVSALARFQQLGISV 105 (133)
T ss_dssp ESSHHHHHHHHHHHHHTTCCT
T ss_pred CCCCHHHHHHHHHHHHCCCCC
T ss_conf 468367665567776504557
No 18
>>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* (A:110-246)
Probab=85.94 E-value=1.6 Score=22.80 Aligned_cols=94 Identities=7% Similarity=-0.062 Sum_probs=61.0
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999982520057533897068888778882799999999749998781111014665777999999976236864088
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
.+-.|+++|.. +|.+-|+........--+...+.+.+.|++.+..+......+..+........+....+ ..++
T Consensus 11 a~~~L~~~G~~-----~i~~l~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ai~ 84 (137)
T 2fqx_A 11 AALKAKEAGKS-----AVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGV-NVIF 84 (137)
T ss_dssp HHHHHHHTTCC-----EEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTC-CEEE
T ss_pred HHHHHHCCCCC-----EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CEEE
T ss_conf 99744037874-----69996265662157899999999997399736876415875774589999999862699-7999
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
.+++....-++..+++.|+.
T Consensus 85 ~~~D~~A~g~~~al~~~g~~ 104 (137)
T 2fqx_A 85 QVAGGTGNGVIKEARDRRLN 104 (137)
T ss_dssp EECGGGHHHHHHHHHHHHHT
T ss_pred ECCCCCCCHHHHHHHHHHHC
T ss_conf 74788661699999987514
No 19
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:1-121,A:255-277)
Probab=84.06 E-value=2.8 Score=21.09 Aligned_cols=102 Identities=10% Similarity=0.075 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 79999999974999878111101466577799999997623686408853458899999999976981899842664431
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAY 210 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~ 210 (242)
...+.+.+.+.|.. ++-..+.+..+......+.+.+++.+-++++.+...-.+.....++.++.++-+..+.....
T Consensus 40 ~~gi~~~~~~~gy~----v~i~~~~~d~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~ 115 (144)
T 3brq_A 40 LFHAARXAEEKGRQ----LLLADGKHSAEEERQAIQYLLDLRCDAIXIYPRFLSVDEIDDIIDAHSQPIXVLNRRLRKNS 115 (144)
T ss_dssp HHHHHHHHHHTTCE----EEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSSSG
T ss_pred HHHHHHHHHHCCCE----EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 99999999985999----99996899989999999988634653024403332117889998751798522222234533
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 11375457889899999999999999986489
Q gi|255764508|r 211 YSIIPLSANFYLTELALKEYIGILIAYYRGNR 242 (242)
Q Consensus 211 ~~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~~ 242 (242)
..+. ...+..+.|.+|.+...+-|+.
T Consensus 116 ~~~V------~~~~~~~~~~~~~~~~~~~~~~ 141 (144)
T 3brq_A 116 SHSV------WCVTEXIQEIIGRLIFXLDGGD 141 (144)
T ss_dssp GGEE------CCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCC------CCHHHHHHHHHHHHHHHHHCCC
T ss_conf 2223------3499999999999999972989
No 20
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=82.21 E-value=3.4 Score=20.62 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999982520057533897068888778-8827999999997499987811110146657779999999762368640885
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILV 179 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~-~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilV 179 (242)
-.|+++|..+ |.+=|+...... ..--+..++.+.+.|++.+..+......+..+-.....++++.......++.
T Consensus 11 ~~l~~~G~~~-----i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 85 (133)
T 3dbi_A 11 AELINAGHQE-----IAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVA 85 (133)
T ss_dssp HHHHHTTCCS-----EEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHHCCCCE-----EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9999849985-----99997899986699999999999998399988314761576467799999999834888649996
Q ss_pred CCHHHHHHHHHHHHHCCCE
Q ss_conf 3458899999999976981
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~ 198 (242)
+|+.-...++..+++.|+.
T Consensus 86 ~~d~~a~~~~~~l~~~g~~ 104 (133)
T 3dbi_A 86 SNDDXAIGAXKALHERGVA 104 (133)
T ss_dssp SSHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHCCCC
T ss_conf 7899999999999975999
No 21
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=82.21 E-value=3.4 Score=20.62 Aligned_cols=93 Identities=11% Similarity=0.137 Sum_probs=56.0
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999982520057533897068888778-8827999999997499987811110146657779999999762368640885
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILV 179 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~-~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilV 179 (242)
-.|+++|..+ |.+=|+...... ..--+..++.+.+.|++.+..+......+..+-.....++++.......++.
T Consensus 11 ~~l~~~G~~~-----i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~ 85 (133)
T 3brq_A 11 AELINAGHQE-----IAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVA 85 (133)
T ss_dssp HHHHHTTCCS-----EEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE
T ss_pred HHHHHHCCCE-----EEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 5543403655-----99995775565303354599999986398777203532676521056777999855899872235
Q ss_pred CCHHHHHHHHHHHHHCCCE
Q ss_conf 3458899999999976981
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~ 198 (242)
+|+.-...++..+++.|+.
T Consensus 86 ~~d~~a~~~~~~l~~~g~~ 104 (133)
T 3brq_A 86 SNDDXAIGAXKALHERGVA 104 (133)
T ss_dssp SSHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHEHHHHHCCCC
T ss_conf 8808884224436654987
No 22
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285)
Probab=80.91 E-value=1.2 Score=23.57 Aligned_cols=93 Identities=12% Similarity=0.058 Sum_probs=61.6
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCC-CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999998252005753389706888877-888279999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKH-GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~-~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|+++|..+ |.+-|+..... ....-+..++.+.+.|++.+.+...+.+.....++. .+++.+.+....+
T Consensus 8 a~~~L~~~G~r~-----I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~ai 80 (130)
T 3ctp_A 8 AFDHLYEKGCRK-----ILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVKMLEED--INSMKDIVNYDGI 80 (130)
T ss_dssp HHHHHHHTTCCS-----EEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGGGGGCC--CTTGGGGGGSSEE
T ss_pred HHHHHHHCCCCE-----EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH--HHHHHHCCCCCHH
T ss_conf 999999869966-----999646345416888887620136651356222321002457789999--9998505599845
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+++++....-.+..+++.|+.
T Consensus 81 ~~~~d~~A~~~~~~l~~~g~~ 101 (130)
T 3ctp_A 81 FVFNDIAAATVMRALKKRGVS 101 (130)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred HHCCHHHHHHHHHHHHHCCCC
T ss_conf 524658789999999984999
No 23
>>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* (A:117-249)
Probab=79.29 E-value=4.2 Score=19.99 Aligned_cols=96 Identities=10% Similarity=0.014 Sum_probs=62.4
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCC-CCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 9999998252005753389706888877-8882-7999999997499987811110146657779999999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKH-GLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~-~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
.+-.|+++|..+ |.+=|+..... ...| -...++.+.+.|+..+.........+...........+...+....
T Consensus 8 a~~~L~~~G~r~-----i~~i~~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (133)
T 2fep_A 8 AVKLLVDKGHTD-----IAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTA 82 (133)
T ss_dssp HHHHHHHTTCSS-----EEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSE
T ss_pred HHHHHHHCCCCE-----EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCE
T ss_conf 999998629943-----678605766553100013688999997189987105884464343206678999836999967
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++.+++.....++..+++.|+++
T Consensus 83 i~~~~d~~a~~~~~~l~~~~~~v 105 (133)
T 2fep_A 83 ILSATDEMALGIIHAAQDQGLSI 105 (133)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCT
T ss_pred EEECCHHHHHHHHHHHHHHCCCC
T ss_conf 99778999999999999849998
No 24
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:108-243,A:302-316)
Probab=78.34 E-value=4.5 Score=19.81 Aligned_cols=85 Identities=12% Similarity=0.041 Sum_probs=51.8
Q ss_pred EEEECCCCCCCCC-CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 3897068888778-882799999999749998781111014665777999999976236864088534588999999999
Q gi|255764508|r 115 TIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 115 ~ii~SGg~~~~~~-~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~ 193 (242)
+|.+-+|...... ..--+.+++.+.+.|.+.+-........+....-....+++.+++.-+.++..+.....-+...++
T Consensus 23 ~I~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 102 (151)
T 1tjy_A 23 KVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAE 102 (151)
T ss_dssp EEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHH
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 20000246764201356666777765035533201233021467888999999873289851999788689999999999
Q ss_pred HCCCEE
Q ss_conf 769818
Q gi|255764508|r 194 HFGINT 199 (242)
Q Consensus 194 ~~gi~~ 199 (242)
+.|.+-
T Consensus 103 ~~g~~~ 108 (151)
T 1tjy_A 103 NLKRNN 108 (151)
T ss_dssp HTTCCS
T ss_pred HCCCCC
T ss_conf 769998
No 25
>>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ... (A:103-289)
Probab=77.87 E-value=4.6 Score=19.72 Aligned_cols=123 Identities=12% Similarity=0.059 Sum_probs=66.8
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 5456875899962521377776555434682058999-999999982520057533897068888778882799999999
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRI-FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLL 139 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl-~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~ 139 (242)
...++.+.||++|-|-. ....|+ .++..-+ .. ...++.+-.. .....+.+.+.
T Consensus 42 ~~~~~~~~vv~iGiGGS--------------~LG~~~l~~al~~~----~~-~~~~i~fldn-------~Dp~~~~~~l~ 95 (187)
T 2cxn_A 42 YTGKSITDIINIGIGGS--------------DLGPLMVTEALKPY----SK-GGPRVWFVSN-------IDGTHIAKTLA 95 (187)
T ss_dssp TTSCBCCEEEEECCGGG--------------THHHHHHHHHTGGG----GT-TSCEEEEECC-------SSHHHHHHHHT
T ss_pred CCCCCCCEEEEEECCCC--------------CHHHHHHHHHHHHH----CC-CCEEEEECCC-------CCHHHHHHHHH
T ss_conf 66554431577615753--------------13189999996344----02-6616997689-------75077898764
Q ss_pred HCCCCHHHHHCCHHHHHHHHHHHH---HHHHHHHCCC------CCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 749998781111014665777999---9999762368------6408853458899999999976981899842664431
Q gi|255764508|r 140 ESGVERDDIKLETQSLDTFQNAQF---SSSMIKNMQG------KNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAY 210 (242)
Q Consensus 140 ~~Gv~~~~I~~e~~s~nT~ena~~---~~~il~~~~~------~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~ 210 (242)
++.-.+.-++.-.||-+|.|.+.+ .++++++.+. ++++.||++--..+ .+.+.+.++.+.|-+ ..+.
T Consensus 96 ~l~~~~Tl~iviSKSg~T~ET~~n~~~~~~~l~~~~~~~~~~~~h~vavT~~~~~~~---~~~~~~~~~f~~~~~-VGGR 171 (187)
T 2cxn_A 96 SLSPETSLFIIASKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVK---EFGIDPQNMFEFWDW-VGGR 171 (187)
T ss_dssp TCCTTTEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCCGGGGGGTEEEEESCHHHHH---HHTCCGGGEEECCTT-SCGG
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHH---HHCCCCCEEEEEECC-CCCC
T ss_conf 048665489994687770668899999999999844663544300011356189999---831565238875237-6520
Q ss_pred CCC
Q ss_conf 113
Q gi|255764508|r 211 YSI 213 (242)
Q Consensus 211 ~~~ 213 (242)
++.
T Consensus 172 fSv 174 (187)
T 2cxn_A 172 YSL 174 (187)
T ss_dssp GCT
T ss_pred CCC
T ss_conf 023
No 26
>>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375)
Probab=77.17 E-value=4.8 Score=19.60 Aligned_cols=71 Identities=13% Similarity=0.054 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEE
Q ss_conf 88827999999997499987811110146657779999999762368640885345889999999997698189
Q gi|255764508|r 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 127 ~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~ 200 (242)
+.+-.+.+++.+.+.|+.--. .+.-+.++-+=..+..++ ++.+.+-|++.++.-+.......++++|++..
T Consensus 31 G~~~~~~~~~~l~~~G~~Vv~--~~~~~~~~tDfss~l~~i-~~s~advVil~~~g~d~~~~ikqa~e~Gl~~~ 101 (191)
T 3i09_A 31 GKALEKNTADVVKANGGKVLG--EVRHPLSASDFSSFLLQA-QSSKAQILGLANAGGDTVNAIKAAKEFGITKT 101 (191)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE--EEEECTTCSCCHHHHHHH-HHTCCSEEEEECCHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHHHHHHCCCEEEE--EEEECCCCCCCHHHHHHH-HHCCCCEEEEECCCCHHHHHHHHHHHCCCCCC
T ss_conf 789999999988744964888--896067565413799887-62599889990577068999999998098876
No 27
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:99-232)
Probab=77.03 E-value=4.9 Score=19.57 Aligned_cols=94 Identities=7% Similarity=-0.053 Sum_probs=60.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCC--CCCH----HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999998252005753389706888877--8882----7999999997499987811110146657779999999762368
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKH--GLAE----SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG 173 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~--~~~E----a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~ 173 (242)
+-.|+++|.. +|.+=|+..... ..+. -+.+++.+.+.|++.+.......+.+-.+-.....+++...+.
T Consensus 8 ~~~L~~~G~~-----~I~~i~~~~~~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (134)
T 2h0a_A 8 GAYLARFPGP-----IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASP 82 (134)
T ss_dssp HHHHTTSSSC-----EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHCCC-----CEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 9999985287-----14999447864210005899888765311332101122121000242101345554432311367
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 6408853458899999999976981
Q gi|255764508|r 174 KNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 174 ~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
...++++|+......+..++..|+.
T Consensus 83 ~~aii~~~d~~a~~~~~~l~~~g~~ 107 (134)
T 2h0a_A 83 PLNVFAGADQVALGVLEEAVRLGLT 107 (134)
T ss_dssp SEEEECSSHHHHHHHHHHHHTTSCT
T ss_pred CCEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 7434121047788888888642764
No 28
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241)
Probab=76.62 E-value=5 Score=19.50 Aligned_cols=93 Identities=6% Similarity=0.015 Sum_probs=58.2
Q ss_pred HHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCEEE
Q ss_conf 999982520057533897068888778882-7999999997499987811110146657779999-99976236864088
Q gi|255764508|r 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNIIL 178 (242)
Q Consensus 101 ~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~vil 178 (242)
-.|+++|.. +|.+-|+........| -+...+.+.+.|++.+..+..... .+.+++... .++++.......++
T Consensus 10 ~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aii 83 (132)
T 1dbq_A 10 RYLIERGHR-----EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGD-FEPESGYRAMQQILSQPHRPTAVF 83 (132)
T ss_dssp HHHHHTTCC-----SEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCC-SSHHHHHHHHHHHHTSSSCCSEEE
T ss_pred HHHHHCCCC-----EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 999865996-----69996376312478999976678999808997720023576-777778999999984599984588
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.+++......+...++.|+.+
T Consensus 84 ~~~~~~a~g~~~~l~~~g~~i 104 (132)
T 1dbq_A 84 CGGDIMAMGALCAADEMGLRV 104 (132)
T ss_dssp ESCHHHHHHHHHHHHHTTCCT
T ss_pred ECCHHHHHHHHHHHHHCCCCC
T ss_conf 557899999999999869999
No 29
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292)
Probab=76.62 E-value=5 Score=19.50 Aligned_cols=94 Identities=6% Similarity=0.011 Sum_probs=57.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCEE
Q ss_conf 9999982520057533897068888778882-7999999997499987811110146657779999-9997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~vi 177 (242)
+-.|+++|.. +|.+-|+........| -+...+.+.+.|++.+..+..... .+.+++... .++++.......+
T Consensus 9 ~~~L~~~G~~-----~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ai 82 (132)
T 1qpz_A 9 GRYLIERGHR-----EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGD-FEPESGYRAMQQILSQPHRPTAV 82 (132)
T ss_dssp HHHHHHHTCC-----CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCC-SSHHHHHHHHHHHHTSSSCCSEE
T ss_pred HHHHHHCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECC-CCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9999975998-----59998288555317899988999999859999822189543-42667999999998179998089
Q ss_pred EECCHHHHHHHHHHHHHCCCEE
Q ss_conf 8534588999999999769818
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.+++......+...++.|+.+
T Consensus 83 i~~~~~~a~g~~~~l~~~g~~i 104 (132)
T 1qpz_A 83 FCGGDIMAMGALCAADEMGLRV 104 (132)
T ss_dssp EESSHHHHHHHHHHHHHTTCCT
T ss_pred EECCHHHHHHCCHHHHHCCCCC
T ss_conf 9777099874022698739978
No 30
>>3bq9_A Predicted rossmann fold nucleotide-binding domain-containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica OS145} (A:86-460)
Probab=73.62 E-value=5.5 Score=19.22 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=19.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHC----CCCCEEEECC
Q ss_conf 8111101466577799999997623----6864088534
Q gi|255764508|r 147 DIKLETQSLDTFQNAQFSSSMIKNM----QGKNIILVSS 181 (242)
Q Consensus 147 ~I~~e~~s~nT~ena~~~~~il~~~----~~~~vilVTs 181 (242)
.++.-+-+.-|.|++.+..-+.+-. ..-.++|+-.
T Consensus 163 a~IvlPGG~GTldElfe~Ltl~q~g~~~~~p~PiVL~G~ 201 (375)
T 3bq9_A 163 GIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGP 201 (375)
T ss_dssp EEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEEC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 899938987639999999999853227888712899788
No 31
>>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* (A:170-304,A:441-482)
Probab=71.32 E-value=6.7 Score=18.67 Aligned_cols=83 Identities=7% Similarity=-0.034 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 88827999999997499987811110146657779999999762368640885345889999999997698189984266
Q gi|255764508|r 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 127 ~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+..-++..++.+.+.|+.-......+...+..++.....+.+++.+.+=++++++..-.......+++.|++..-+.+|.
T Consensus 30 G~~~~~~l~~~~~~~Gi~V~~~~~~~~~~~~~~d~~~~l~~i~~s~~~vVv~~~~~~~~~~il~~a~~~Gl~~~~I~s~~ 109 (177)
T 2e4u_A 30 GETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNASFTWVASDG 109 (177)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTT
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 77999999998886483499999657887577788877777652687089997250899999999998088763899711
Q ss_pred CCC
Q ss_conf 443
Q gi|255764508|r 207 LNA 209 (242)
Q Consensus 207 ~~~ 209 (242)
...
T Consensus 110 ~~~ 112 (177)
T 2e4u_A 110 WGA 112 (177)
T ss_dssp TTT
T ss_pred CCC
T ss_conf 356
No 32
>>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} (A:175-320)
Probab=70.58 E-value=7 Score=18.56 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=50.9
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 999999997499987811110146657779999-9997623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+..++.+.+.|++.+..+......++.+..... ..+++.+.....++.+++.....++..++..|+.
T Consensus 52 ~G~~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~d~~A~~~~~~l~~~g~~ 119 (146)
T 3h5t_A 52 RGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLCTVDALAFGVLEYLKSVGKS 119 (146)
T ss_dssp HHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCC
T ss_conf 78999988613565543223567654777999999876404788378607889999889999983999
No 33
>>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A (A:83-462)
Probab=68.70 E-value=7.6 Score=18.31 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=19.5
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHCC----CCCEEEECCH
Q ss_conf 81111014665777999999976236----8640885345
Q gi|255764508|r 147 DIKLETQSLDTFQNAQFSSSMIKNMQ----GKNIILVSSA 182 (242)
Q Consensus 147 ~I~~e~~s~nT~ena~~~~~il~~~~----~~~vilVTsa 182 (242)
.++.-+-+.-|.|++.+.--+.+-.. ...++|+-..
T Consensus 168 aiIvlPGG~GTLdElfe~ltl~q~g~~~k~~~PiVL~G~~ 207 (380)
T 3gh1_A 168 GIIIFPGGPGTAEELLYILGIXXHPENADQPXPIVLTGPK 207 (380)
T ss_dssp EEEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECG
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 8998589765099999999998555578898689996786
No 34
>>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} (A:128-256)
Probab=68.16 E-value=7.8 Score=18.24 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=58.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCC-CCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99999825200575338970688887-78882799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQK-HGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~-~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|.++|..+ |.+-||.... ....--..+++.+.+.|++.+.........++++... ..+........++
T Consensus 9 ~~~L~~~G~~~-----i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~aii 80 (129)
T 3huu_A 9 TQYLYHLGHRH-----ILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQ---YCIDASHMPSVII 80 (129)
T ss_dssp HHHHHHTTCCS-----EEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHHHC-----------CCCSEEE
T ss_pred HHHHHHCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH---HHHHCCCCCCEEE
T ss_conf 99998709876-----555679976607999999999999985999650675134215668999---9995799986331
Q ss_pred ECCHHHHHHHHHHHHHCCCE
Q ss_conf 53458899999999976981
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~ 198 (242)
+++..--.+.+..+++.|++
T Consensus 81 ~~~d~~a~~~~~~l~~~~~~ 100 (129)
T 3huu_A 81 TSDVMLNMQLLNVLYEYQLR 100 (129)
T ss_dssp ESSHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHCCCC
T ss_conf 38889999999999975998
No 35
>>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} (A:109-250)
Probab=68.02 E-value=7.9 Score=18.22 Aligned_cols=67 Identities=3% Similarity=-0.109 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCHHH-HHCCH-HHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 9999999974999878-11110-1466577799999997623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDD-IKLET-QSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~-I~~e~-~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+..++.+.+.|.+... ..... ...+.++.+....+.+.+++.-..++.+++.+...++...++.|++
T Consensus 40 ~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ 108 (142)
T 2vk2_A 40 KGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLK 108 (142)
T ss_dssp HHHHHHTTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 999999975036551023203310158999999988651247643200147849999999999986014
No 36
>>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} (A:114-248)
Probab=67.90 E-value=7.9 Score=18.20 Aligned_cols=66 Identities=5% Similarity=0.011 Sum_probs=45.8
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 9999999974999878111101466577799999997623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+..++.+.+.|.... +.......+..+......+++...+..+.++.+++.+...+...+++.|+.
T Consensus 40 ~Gf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~g~~~al~~~g~p 105 (135)
T 1gud_A 40 NGATEAFKKASQIKL-VASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKT 105 (135)
T ss_dssp HHHHHHHHTCTTEEE-EEEEECTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HCCHHHHHCCCCCCE-EEEECCCHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 010345530577640-356415301589999999876522574123226769999999999977999
No 37
>>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} (A:110-255)
Probab=65.30 E-value=8.9 Score=17.88 Aligned_cols=98 Identities=8% Similarity=-0.033 Sum_probs=63.4
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH-HHHHCCCC--
Q ss_conf 99999982520057533897068888778882-799999999749998781111014665777999999-97623686--
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS-MIKNMQGK-- 174 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~-il~~~~~~-- 174 (242)
.+-.|.++|.... .-.+++|+........| -..+++.+.+.|++...++......++.+++....+ ++..++..
T Consensus 12 ~~~~li~~G~~h~--~i~~i~~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (146)
T 8abp_A 12 LYKEMQKRGWDVK--ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKH 89 (146)
T ss_dssp HHHHHHHHTCCGG--GEEEEEEECTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCTTCSE
T ss_pred HHHHHCCCCCCCC--CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 9998363357676--06999728987708999999999999974997543333211101367888999974311687640
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 408853458899999999976981
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
..++.++..-...++...++.|+.
T Consensus 90 ~ai~~~nd~~a~g~~~~l~~~g~~ 113 (146)
T 8abp_A 90 WLIVGMNDSTVLGGVRATEGQGFK 113 (146)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCC
T ss_pred EEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 465322348899878899986435
No 38
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230)
Probab=65.22 E-value=8.9 Score=17.87 Aligned_cols=92 Identities=14% Similarity=0.051 Sum_probs=56.1
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 999998252005753389706888877888279999999974999878-1111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDD-IKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~-I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|+++|..+ |.+-|+.... ...--+..++.+.+.|++... +...+.+....++ ...+++...+....++
T Consensus 9 ~~~L~~~G~~~-----i~~i~~~~~~-~~~R~~g~~~a~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ai~ 80 (129)
T 3gyb_A 9 TKHLIDLGHTH-----IAHLRVGSGA-GLRRFESFEATXRAHGLEPLSNDYLGPAVEHAGYT--ETLALLKEHPEVTAIF 80 (129)
T ss_dssp HHHHHHTTCCS-----EEEECCSSHH-HHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHH--HHHHHHHHCTTCCEEE
T ss_pred CCHHHHCCCCC-----CCEECCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH--HHHHHHHHCCCCCEEE
T ss_conf 00001102232-----2000123202-35667777789999743012112333343777655--6677765136863553
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++|+....+.+..+++.|+.+
T Consensus 81 ~~~d~~a~~~~~~l~~~g~~i 101 (129)
T 3gyb_A 81 SSNDITAIGALGAARELGLRV 101 (129)
T ss_dssp ESSHHHHHHHHHHHHHHTCCT
T ss_pred ECCCHHHHHHHHHHHHHHHHH
T ss_conf 125331135789988763300
No 39
>>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12} (A:)
Probab=63.26 E-value=9.7 Score=17.63 Aligned_cols=65 Identities=11% Similarity=0.117 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-------CH--HHHHHHHHHHCCCCHHHHHCCHHH
Q ss_conf 54346820589999999999825200575338970688887788-------82--799999999749998781111014
Q gi|255764508|r 85 IRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL-------AE--SIVYNNKLLESGVERDDIKLETQS 154 (242)
Q Consensus 85 ~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-------~E--a~~m~~~l~~~Gv~~~~I~~e~~s 154 (242)
...++...+...+.+-+++.+.++. .+|.+.|= ....+. ++ |+..++++.+.||++++|.....+
T Consensus 41 ~s~~l~~~~~~~L~~ia~~L~~~p~----~~i~I~Gh-td~~g~~~~N~~LS~~RA~aV~~~l~~~gv~~~ri~~~g~G 114 (149)
T 2k1s_A 41 SSATLKPAGANTLTGVAMVLKEYPK----TAVNVIGY-TDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGLG 114 (149)
T ss_dssp SSSCBCHHHHHHHHHHHHHHHHCTT----EEEEEEEE-CCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEECT
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCC----CCEEECCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 9733698999999988777731887----52010224-13544543320178899999999999819976633589965
No 40
>>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} (A:160-293)
Probab=62.87 E-value=9.8 Score=17.59 Aligned_cols=96 Identities=17% Similarity=0.126 Sum_probs=64.9
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCC-CCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 9999998252005753389706888877-8882-7999999997499987811110146657779999999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKH-GLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~-~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
.+-.|+++|.. +|.+=|+..... ...| -+...+.+.+.|++.+.......+.+...-.....+++........
T Consensus 9 a~~~L~~~G~r-----~i~~i~~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (134)
T 2hsg_A 9 AVQSLIDSGHK-----NIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTA 83 (134)
T ss_dssp HHHHHHTTTCS-----CEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSE
T ss_pred HHHHHCCCCCC-----EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 86432136871-----4799953643333102688999999998599988325884688778899999999834999857
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++..+.-.....+...++.|+++
T Consensus 84 ~~~~~~~~a~~~~~~l~~~~~~i 106 (134)
T 2hsg_A 84 IFVGTDEMALGVIHGAQDRGLNV 106 (134)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCH
T ss_pred EECCCCHHHHHHHHHHHHCCCCC
T ss_conf 74178588873238999729988
No 41
>>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} (P:)
Probab=62.13 E-value=10 Score=17.50 Aligned_cols=65 Identities=8% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-------CH--HHHHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 4346820589999999999825200575338970688887788-------82--7999999997499987811110146
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL-------AE--SIVYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-------~E--a~~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
..++...+...+..-+...+..+. ..|.+.|- ....+. ++ |+..++||.+.|++.++|.....+.
T Consensus 38 s~~l~~~~~~~L~~~a~~l~~~p~----~~i~I~Gh-td~~g~~~~N~~LS~~RA~aV~~~l~~~g~~~~ri~~~g~G~ 111 (134)
T 2aiz_P 38 KYDITGEYVQILDAHAAYLNATPA----AKVLVEGN-TDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGE 111 (134)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSTT----CCEEEEEE-CCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCC----CEEEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 800498899999999999986998----48999731-243433210125789999999999997087532034576344
No 42
>>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} (A:)
Probab=61.68 E-value=10 Score=17.45 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=51.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCC-------CCH--HHHHHHH
Q ss_conf 5899962521377776555434682058999999999982520057533897068888778-------882--7999999
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHG-------LAE--SIVYNNK 137 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~-------~~E--a~~m~~~ 137 (242)
+..+.|..-+.... ...++...+...+.+-++..+..+ ..+|.+.|= ....+ .++ |+.+++|
T Consensus 8 ~~~i~l~~~i~F~~----~s~~l~~~~~~~L~~ia~~l~~~p----~~~i~I~Gh-td~~g~~~~N~~LS~~RA~aV~~~ 78 (164)
T 1r1m_A 8 DETISLSAKTLFGF----DKDSLRAEAQDNLKVLAQRLSRTN----IQSVRVEGH-TDFMGSDKYNQALSERRAYVVANN 78 (164)
T ss_dssp EEEEEEEHHHHHTT----SSSCCCHHHHHHHHHHHHHHTTSC----EEEEEEEEE-CCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCEEECC----CCCCCCHHHHHHHHHHHHHHHHCC----CCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 60799777335518----972269899999999999997789----818999997-389898557079999999999999
Q ss_pred HHHCCCCHHHHHCCHHHH
Q ss_conf 997499987811110146
Q gi|255764508|r 138 LLESGVERDDIKLETQSL 155 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s~ 155 (242)
|...|++.++|.....+.
T Consensus 79 L~~~gi~~~ri~~~g~G~ 96 (164)
T 1r1m_A 79 LVSNGVPVSRISAVGLGE 96 (164)
T ss_dssp HHHTTCCGGGEEEEECTT
T ss_pred HHHCCCCHHHEEEEEECC
T ss_conf 998599989989998767
No 43
>>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:108-238)
Probab=61.13 E-value=11 Score=17.39 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=57.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|+++|..+ |.+-|+........+ .+..++.+.+.|++.+.++... +.+..+......+++...+....++
T Consensus 9 ~~~L~~~G~r~-----I~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ai~ 82 (131)
T 3c3k_A 9 VDQLVKSGKKR-----IALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAE-NLDYMAGKLATFSLLKSAVKPDAIF 82 (131)
T ss_dssp HHHHHHTTCCC-----EEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECS-SSSHHHHHHHHHHHHSSSSCCSEEE
T ss_pred CHHHHCCCCCC-----CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 02221157655-----34444555520444434667678998098632222233-1145655411222212244785310
Q ss_pred ECCHHHHHHHHHHHHHCCCEE
Q ss_conf 534588999999999769818
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.+++....-.+..+++.|+++
T Consensus 83 ~~~d~~a~~~~~~~~~~g~~i 103 (131)
T 3c3k_A 83 AISDVLAAGAIQALTESGLSI 103 (131)
T ss_dssp ESSHHHHHHHHHHHHHTTCCT
T ss_pred EHHHHHHHHHHHHHHHCCCCC
T ss_conf 000488999999997503467
No 44
>>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus} (A:155-278)
Probab=61.11 E-value=11 Score=17.39 Aligned_cols=67 Identities=12% Similarity=0.137 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC-CCCC-CC----CCH--HHHHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 434682058999999999982520057533897068-8887-78----882--7999999997499987811110146
Q gi|255764508|r 86 RIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGG-DPQK-HG----LAE--SIVYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 86 ~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg-~~~~-~~----~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
..++...+...+.+-+.+.+..+.- ..|.+.|- +..+ .. .+. |...++++...|+++++|.....+.
T Consensus 16 s~~L~~~~~~~L~~ia~~L~~~~~~---~~I~I~Ghtd~~g~~~~n~~LS~~RA~~V~~~l~~~Gi~~~ri~~~g~G~ 90 (124)
T 2zf8_A 16 GDQLTKASKKRLSQIADYIRHNQDI---DLVLVATYTDSTDGKSASQSLSERRAESLRDYFQSLGLPEDRIQVQGYGK 90 (124)
T ss_dssp SSSBCHHHHHHHHHHHHHHTTCCSC---CEEEEEEC-------CCCHHHHHHHHHHHHHHHHHHSCCTTSEECCEEC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECC
T ss_conf 7116999999999999999868996---58999987489998788799999999999999998599979989999756
No 45
>>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A (A:168-342)
Probab=58.90 E-value=12 Score=17.14 Aligned_cols=123 Identities=11% Similarity=0.071 Sum_probs=64.1
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4568758999625213777765554346820589999-999999825200575338970688887788827999999997
Q gi|255764508|r 62 WKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIF-ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 62 ~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~-~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
.-++.+.||++|-|-. +...|+. +|.. +..+ .+.++.+-.. .....+.+.+.+
T Consensus 26 ~g~~~~~vv~iGIGGS--------------~LGp~~l~~al~----~~~~-~~~~i~f~~n-------~Dp~~~~~~l~~ 79 (175)
T 2o2c_A 26 TGKAIRHVVNIGIGGS--------------DLGPVMATEALK----PFSQ-RDLSLHFVSN-------VDGTHIAEVLKS 79 (175)
T ss_dssp TSCBCCEEEEECCGGG--------------THHHHHHHHHTG----GGSC-TTSEEEEECC-------SSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCC--------------HHHHHHHHHHHH----CCCC-CCCEEEECCC-------CCHHHHHHHHHH
T ss_conf 6444430577247733--------------488999999874----1145-7720686478-------646789999864
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHH---HHHHHHCC-----------CCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 499987811110146657779999---99976236-----------8640885345889999999997698189984266
Q gi|255764508|r 141 SGVERDDIKLETQSLDTFQNAQFS---SSMIKNMQ-----------GKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s~nT~ena~~~---~~il~~~~-----------~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+.-...-++.-.||-+|.|.+.+. ++++++.+ .++++.||++---.+. +......+.+.|-+
T Consensus 80 l~~~~Tl~iviSKSg~T~ET~~n~~~~~~~l~~~~g~~~~~~~~~~~~~~vavT~~~~~~~~---~~~~~~~~f~~~~~- 155 (175)
T 2o2c_A 80 IDIEATLFIVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNNQKVKE---FGIDEENMFQFWDW- 155 (175)
T ss_dssp CCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHEEEEESCHHHHHH---HTCCGGGEEECCTT-
T ss_pred HCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHEEEEECCCHHHHHH---HHHCCCCEEEEECC-
T ss_conf 14432036751123565324789999999999998750565122123226763275389999---73003757752024-
Q ss_pred CCCCCCCC
Q ss_conf 44311137
Q gi|255764508|r 207 LNAYYSII 214 (242)
Q Consensus 207 ~~~~~~~~ 214 (242)
..+.++.+
T Consensus 156 VGGRfSvl 163 (175)
T 2o2c_A 156 VGGRYSMW 163 (175)
T ss_dssp SCGGGCTT
T ss_pred CCHHHHCC
T ss_conf 53022103
No 46
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:171-304)
Probab=58.34 E-value=12 Score=17.08 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=57.7
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHH-HHHHHHHHHCCCCC
Q ss_conf 99999982520057533897068888778882--7999999997499987811110146657779-99999976236864
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNA-QFSSSMIKNMQGKN 175 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena-~~~~~il~~~~~~~ 175 (242)
.+-.|.++|..+ -.+++|.. ......+ -...++.+.+.|++.+..........+.+.. ...++++.......
T Consensus 8 a~~~L~~~G~~~----i~~i~~~~-~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (134)
T 3e3m_A 8 MTNALLARGFRK----IVFLGEKD-DDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTD 82 (134)
T ss_dssp HHHHHHHTTCCS----EEEEEESS-CTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHCCCCE----EEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999849974----99981787-5554079998605899986202654222111120245555566666665146750
Q ss_pred EEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 088534588999999999769818
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
.++++|.....-++..++..|+.+
T Consensus 83 ai~~~~d~~a~~~~~~l~~~g~~v 106 (134)
T 3e3m_A 83 CIFCVSDMPAFGLLSRLKSIGVAV 106 (134)
T ss_dssp EEEESSHHHHHHHHHHHHHHTCCT
T ss_pred EEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 698606711565889998649988
No 47
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:158-285)
Probab=58.25 E-value=12 Score=17.07 Aligned_cols=88 Identities=10% Similarity=0.023 Sum_probs=55.9
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
Q ss_conf 99982520057533897068888778882-79999999974999878111101466577799999997623686408853
Q gi|255764508|r 102 RLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVS 180 (242)
Q Consensus 102 ~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVT 180 (242)
.|+++|.. +|.+-|+........| -...++.+.+.|++.+ +....+..+......+.+.+.+....++++
T Consensus 11 ~L~~~G~~-----~ia~i~~~~~~~~~~~R~~g~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~ 81 (128)
T 3jvd_A 11 SVLGGSGM-----NIAALVGEESLSTTQERMRGISHAASIYGAEVT----FHFGHYSVESGEEMAQVVFNNGLPDALIVA 81 (128)
T ss_dssp HHCCSSSC-----EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE----EEECCSSHHHHHHHHHHHHHTCCCSEEEEC
T ss_pred CCCCCCCE-----EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC----CEECCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 12345531-----687504653211245544667778986086422----200254224577888988750431155543
Q ss_pred CHHHHHHHHHHHHHCCCE
Q ss_conf 458899999999976981
Q gi|255764508|r 181 SAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 181 sa~Hm~RA~~~f~~~gi~ 198 (242)
++.....++..++..|+.
T Consensus 82 ~d~~a~~~~~~l~~~g~~ 99 (128)
T 3jvd_A 82 SPRLMAGVMRAFTRLNVR 99 (128)
T ss_dssp CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 466665535788887505
No 48
>>2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} (A:122-251)
Probab=58.19 E-value=12 Score=17.07 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=54.7
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99999982520057533897068888778882-79999999974999878111101466577799999997623686408
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
.+-.|+++|..+ |.+=||........| -...++.+.+.|++...+...+.+..- ......++....+....+
T Consensus 8 a~~~L~~~G~~~-----i~~i~~~~~~~~~~~r~~gf~~al~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 80 (130)
T 2iks_A 8 LAEELRKFPAET-----VLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREA--AAQLFEKWLETHPXPQAL 80 (130)
T ss_dssp HHHHHHTSCCSS-----EEEEEECTTSHHHHHHHHHHHHHHTTCCCCEEEEEESSSCHHH--HHHHHHHHTTTSCCCSEE
T ss_pred CCCHHHHHCCCC-----CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH--HHHHHHHHHHHCCCCCHH
T ss_conf 310122202333-----2223455554431001255555555223432212233213677--778887777632685044
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
++++..+...++..++..|+.
T Consensus 81 ~~~~~~~a~~~~~~~~~~~~~ 101 (130)
T 2iks_A 81 FTTSFALLQGVXDVTLRRDGK 101 (130)
T ss_dssp EESSHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 310157776666665410025
No 49
>>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} (A:115-251)
Probab=58.00 E-value=12 Score=17.04 Aligned_cols=94 Identities=12% Similarity=0.125 Sum_probs=54.2
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCC-CCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH-----CCC
Q ss_conf 9999982520057533897068888778-8827999999997499987811110146657779999999762-----368
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHG-LAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKN-----MQG 173 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~-~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~-----~~~ 173 (242)
+-.|.++|..+ |.+=|+...... ..--+..++.+.+.|++.+.+.......+...-.....+++.. ...
T Consensus 9 ~~~L~~~G~r~-----i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (137)
T 3kke_A 9 TEHLITLGHSR-----IAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDG 83 (137)
T ss_dssp HHHHHHTTCCS-----EEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTS
T ss_pred HHHHHHHCCCC-----EEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999828772-----7742688777459999999999999819975413320456675789999999998777524679
Q ss_pred CCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 6408853458899999999976981
Q gi|255764508|r 174 KNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 174 ~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
...++++|+.....++..++..|+.
T Consensus 84 ~~aii~~~d~~a~~~~~~l~~~g~~ 108 (137)
T 3kke_A 84 PTAVVVASVNAAVGALSTALRLGLR 108 (137)
T ss_dssp CSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 8689966768899999999983986
No 50
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:109-239)
Probab=57.92 E-value=12 Score=17.04 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=55.1
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99982520057533897068888778882--7999999997499987811110146657779999999762368640885
Q gi|255764508|r 102 RLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILV 179 (242)
Q Consensus 102 ~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilV 179 (242)
.|.++|.. +|.+-|+.... ...+ -+...+.+.+.|++.......... .+.+.-......+...+....+++
T Consensus 11 ~L~~~G~~-----~i~~i~~~~~~-~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~aii~ 83 (131)
T 3clk_A 11 LLINEGHR-----QIGIAGIDQYP-YTGRKRLAGYKKALKEANIAINQEWIKPGD-YSYTSGEQAXKAFGKNTDLTGIIA 83 (131)
T ss_dssp HHHTTTCC-----SEEEESCCCCT-TTHHHHHHHHHHHHHHTTCCCCGGGEECCC-SSHHHHHHHHHHHCTTCCCSEEEE
T ss_pred HHCCCCCC-----CCCCCCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 42223321-----12234788322-201445677777788708653200012221-012211133345664566746753
Q ss_pred CCHHHHHHHHHHHHHCCCE
Q ss_conf 3458899999999976981
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~ 198 (242)
++...+..++..+++.|+.
T Consensus 84 ~~~~~a~~~~~~l~~~g~~ 102 (131)
T 3clk_A 84 ASDXTAIGILNQASSFGIE 102 (131)
T ss_dssp SSHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCCCCC
T ss_conf 2454433322011444566
No 51
>>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* (A:364-542)
Probab=55.82 E-value=13 Score=16.81 Aligned_cols=113 Identities=8% Similarity=0.025 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 87589996252137777655543468205899999999998252005753389706888877888279999999974999
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVE 144 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~ 144 (242)
+.+.+|++|.+.... ..+.+.+++.... .+.++.++++-|+.+ ++.+...+.+.+.+..
T Consensus 11 ~~~~~v~~~~~~~~K-------------~~~~~l~a~~~l~---~~~~~~~l~i~G~~~-----~~~~~~~~~~~~~~~~ 69 (179)
T 2vsy_A 11 PEQGVVLCCFNNSYK-------------LNPQSMARMLAVL---REVPDSVLWLLSGPG-----EADARLRAFAHAQGVD 69 (179)
T ss_dssp CTTSCEEEECCCGGG-------------CCHHHHHHHHHHH---HHCTTCEEEEECCST-----THHHHHHHHHHHTTCC
T ss_pred CCCCEEEEEECCCCC-------------CCCHHHHHHHHHH---HHCCCCEEEEECCCH-----HHHHHHHHHHHHCCCC
T ss_conf 988707875057555-------------5923999999986---008982699844861-----6778999999860555
Q ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 87811110146657779999999762368640885345889999999997698189984266
Q gi|255764508|r 145 RDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 145 ~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
.+++..... -..++.. +++. .-.+.+.+|.+-..-+...+-..|..++......
T Consensus 70 ~~~v~~~~~--~~~~~~~---~~~~---~adi~l~ps~~~~~~~~~Ea~a~G~pvI~~~~~~ 123 (179)
T 2vsy_A 70 AQRLVFMPK--LPHPQYL---ARYR---HADLFLDTHPYNAHTTASDALWTGCPVLTTPGET 123 (179)
T ss_dssp GGGEEEECC--CCHHHHH---HHGG---GCSEEECCSSSCCSHHHHHHHHTTCCEEBCCCSS
T ss_pred CCCCCCCCC--CCHHHHH---HHHH---CCCEEEECCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 421100355--4407899---9984---5858986989797287999997799989777898
No 52
>>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila} (A:)
Probab=54.96 E-value=13 Score=16.79 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=46.3
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC---------HHHHHHHH
Q ss_conf 589996252137777655543468205899999999998252005753389706888877888---------27999999
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLA---------ESIVYNNK 137 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~---------Ea~~m~~~ 137 (242)
...|.+...+.... ....+...+...+.+=++..+..+ +.+|.+.| .....+.. =|+..+++
T Consensus 47 ~~~i~~~~~v~F~~----~s~~l~~~~~~~L~~la~~l~~~p----~~~i~I~G-htd~~g~~~~n~~LS~~RA~aV~~~ 117 (169)
T 3ldt_A 47 TRTLIIPTDKYFXF----SSPRLNEICYPGLNNVIRLLNFYP----QSTIYVAG-FTDNVGSRSHKRKLSQAQAETXXTF 117 (169)
T ss_dssp EEEEEEETTTCCC-----CCHHHHHHHCHHHHHHHHHHTTCT----TSCEEEEE-ECTTSCCC--CHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEC----CCCCCCHHHHHHHHHHHHHHHHCC----CCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999068825708----963269889999999999999789----95799999-7289897667577999999999999
Q ss_pred HHHCCCCHHHHHCCHHHH
Q ss_conf 997499987811110146
Q gi|255764508|r 138 LLESGVERDDIKLETQSL 155 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s~ 155 (242)
|.+.|++.++|.....+.
T Consensus 118 L~~~Gi~~~ri~~~g~G~ 135 (169)
T 3ldt_A 118 LWANGIAAKRLKAEGYGD 135 (169)
T ss_dssp HHHTTCCTTTEEECCTTC
T ss_pred HHHCCCCHHHEEEEEECC
T ss_conf 998599989989999756
No 53
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:1-163,A:297-318)
Probab=54.07 E-value=14 Score=16.63 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=60.0
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 99999999749998781111014665777999999976236864088534588999999999769818998426644311
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAYY 211 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~~ 211 (242)
+.+.+.+.+.|.. .+-..+.+..+......+.+.+++.+-+++++...--.......++.|+.++-+-........
T Consensus 83 ~gi~~~~~~~gy~----~~i~~~~~d~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~l~~~~iPvV~id~~~~~~~~ 158 (185)
T 3dbi_A 83 FHAARXAEEKGRQ----LLLADGKHSAEEERQAIQYLLDLRCDAIXIYPRFLSVDEIDDIIDAHSQPIXVLNRRLRKNSS 158 (185)
T ss_dssp HHHHHHHHHTTCE----EEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGG
T ss_pred HHHHHHHHHHCCE----EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 9999999971847----873257887788999999999559887997588777588999998549978993676667778
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1375457889899999999999999986489
Q gi|255764508|r 212 SIIPLSANFYLTELALKEYIGILIAYYRGNR 242 (242)
Q Consensus 212 ~~~p~~~~l~~~~~~~~E~ig~l~~~~~g~~ 242 (242)
.. ....+..+.|.+|.+.+.+-||-
T Consensus 159 ~s------V~~~~~~~~~~~~~~~~~~~~~~ 183 (185)
T 3dbi_A 159 HS------VWCVTEXIQEIIGRLIFXLDGGD 183 (185)
T ss_dssp GE------ECBHHHHHHHHHHHHHHHHHCCC
T ss_pred CE------EECHHHHHHHHHHHHHHHHHCCC
T ss_conf 52------53299999999999999972989
No 54
>>2nlv_A XISI protein-like; YP_324325.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics; HET: MSE; 1.30A {Anabaena variabilis atcc 29413} (A:)
Probab=53.97 E-value=6.3 Score=18.86 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=18.5
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 99999997499987811110146
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
..++.|++.|||+++|++--.+-
T Consensus 79 gIa~eLv~~GVPk~dIVLgFh~P 101 (112)
T 2nlv_A 79 NPAEELVXXGVPREDIVLGLQAP 101 (112)
T ss_dssp CHHHHHHHTTCCGGGEEETTSCG
T ss_pred CHHHHHHHCCCCHHHEEEECCCC
T ss_conf 27999998499889989940682
No 55
>>2nvm_A FDXN element excision controlling factor XISI; YP_321976.1, structural genomics, PSI-2, protein structure initiative; 2.19A {Anabaena variabilis atcc 29413} (A:)
Probab=52.57 E-value=6.8 Score=18.63 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHH
Q ss_conf 999999974999878111101466
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLD 156 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~n 156 (242)
..++.|++.|||+++|++--.+-.
T Consensus 93 gIa~eLv~~GVPk~dIVLgFh~P~ 116 (126)
T 2nvm_A 93 AIVDEXLVAGIPQTDIILGFHHPS 116 (126)
T ss_dssp HHHHHHHHTTCCGGGEEETTSCGG
T ss_pred CHHHHHHHCCCCHHHEEEECCCCC
T ss_conf 289999984998899798306823
No 56
>>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:107-242)
Probab=52.40 E-value=15 Score=16.46 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHH-HHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCC
Q ss_conf 9999999974999878111101466577799-99999762368640885345889999999997698
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQ-FSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGI 197 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~-~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi 197 (242)
+..++.+.+.|.+.. .......++.+.+. ...+++.++.....++.+++.+...+...+++.|+
T Consensus 41 ~gf~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 105 (136)
T 3ksm_A 41 QGFLDVLRKHDKIRI--IAAPYAGDDRGAARSEXLRLLKETPTIDGLFTPNESTTIGALVAIRQSGX 105 (136)
T ss_dssp HHHHHHHTTCTTEEE--EECCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCCC--EEEEEHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHCCC
T ss_conf 779999986798642--02110102258899998876414887635662571999999999997599
No 57
>>3d7q_A XISI protein-like; ZP_00106052.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.30A {Nostoc punctiforme pcc 73102} (A:)
Probab=51.86 E-value=6.4 Score=18.79 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHH
Q ss_conf 999999974999878111101466
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLD 156 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~n 156 (242)
..++.|++.|||+++|++--.+-.
T Consensus 79 gIa~eLv~~GVPk~dIVLgFh~P~ 102 (112)
T 3d7q_A 79 DIALELXEXGIDKQDIVIGFHTPK 102 (112)
T ss_dssp CHHHHHHTTTCCGGGEEETTSCHH
T ss_pred CHHHHHHHCCCCHHHEEEECCCCC
T ss_conf 379999984998899899306833
No 58
>>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis} (A:93-282)
Probab=51.21 E-value=15 Score=16.34 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 54568758999625213777765554346820589999999999825200575338970688887788827999999997
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLE 140 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~ 140 (242)
...++.+.||++|-|-. ..+.|+.. +-. .+... ...++.+-.. .....+.+.+.+
T Consensus 46 ~~~~~~~~vv~iGiGGS--------------~LG~~~l~--~al-~~~~~-~~~~i~f~~N-------~Dp~~~~~~l~~ 100 (190)
T 2wu8_A 46 ATGKRISTVVNIGIGGS--------------DLGPVMVY--QAL-RHYAD-AGISARFVSN-------VDPADLIATLAD 100 (190)
T ss_dssp SSSCBCCEEEEECCGGG--------------THHHHHHH--HHT-GGGCC-SSCEEEEECC-------SSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCC--------------CCCHHHHH--HHH-CCCCC-CCCEEEECCC-------CCHHHHHHHHHC
T ss_conf 65343122788723656--------------54299999--996-10023-5401343799-------987999998741
Q ss_pred CCCCHHHHHCCHHHHHHHHHHHHHH---HHHHHCC-----CCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 4999878111101466577799999---9976236-----8640885345889999999997698189984266443111
Q gi|255764508|r 141 SGVERDDIKLETQSLDTFQNAQFSS---SMIKNMQ-----GKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAYYS 212 (242)
Q Consensus 141 ~Gv~~~~I~~e~~s~nT~ena~~~~---~il~~~~-----~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~~~ 212 (242)
..-.+.-++.-.+|-+|.|...+.+ +++++.. .++++.||++-...+. +.+.+.++.+.|-+ ..+.++
T Consensus 101 l~~~~Tl~iviSKSg~T~ET~~~~~~~~~~l~~~~~~~~~~~~~vaiT~~~~~~~~---~~~~~~~if~~~~~-vGGRfS 176 (190)
T 2wu8_A 101 LDPATTLFIVASKTFSTLETLTNATAARRWLTDALGDAAVSRHFVAVSTNKRLVDD---FGINTDNMFGFWDW-VGGRYS 176 (190)
T ss_dssp CCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCGGGGGGTEEEECSCHHHHHH---HTCCGGGEECCCTT-SCGGGC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCCHHHHHH---HCCCCCEEEECCCC-CCCCEE
T ss_conf 47544279994477773467899999999998734657766450011455688986---30340117501245-564001
Q ss_pred CC
Q ss_conf 37
Q gi|255764508|r 213 II 214 (242)
Q Consensus 213 ~~ 214 (242)
.+
T Consensus 177 v~ 178 (190)
T 2wu8_A 177 VD 178 (190)
T ss_dssp TT
T ss_pred EC
T ss_conf 11
No 59
>>2nwv_A XISI protein-like; YP_323822.1, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 1.85A {Anabaena variabilis} (A:)
Probab=49.74 E-value=9.7 Score=17.64 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=19.1
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHH
Q ss_conf 999999974999878111101466
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLD 156 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~n 156 (242)
..++.|++.|||+++|++--.+-.
T Consensus 81 gIa~eLv~~GVPk~dIVLgFh~P~ 104 (114)
T 2nwv_A 81 GIATELXRLGVTNNDIVLAFHPPD 104 (114)
T ss_dssp CHHHHHHHTTCCGGGEEETTSCGG
T ss_pred CHHHHHHHCCCCHHHEEEEECCCC
T ss_conf 279999984998899899406834
No 60
>>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} (A:)
Probab=47.57 E-value=17 Score=15.98 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHH-----HHCCHHHH-HHHHHH-----HHH
Q ss_conf 9999999998252005753389706888877888279999999974999878-----11110146-657779-----999
Q gi|255764508|r 96 RIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDD-----IKLETQSL-DTFQNA-----QFS 164 (242)
Q Consensus 96 Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~-----I~~e~~s~-nT~ena-----~~~ 164 (242)
-+.+.+++.+..+ +|.+.|- | ....-|+.++..+.+.|.+..- +.-++.+. +..++. .+.
T Consensus 31 ~~~~~~~~i~~~~------rI~~~G~-G--~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (188)
T 1tk9_A 31 VGELLCECLKKGG------KILICGN-G--GSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFS 101 (188)
T ss_dssp HHHHHHHHHHTTC------CEEEEES-T--HHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHCCC------EEEEEEC-C--CCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 9999999998599------8999916-8--87434433143406876555443322256787443321225579999999
Q ss_pred HHHHHHCCCCCEEEECC----HHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 99976236864088534----58899999999976981899842
Q gi|255764508|r 165 SSMIKNMQGKNIILVSS----AYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 165 ~~il~~~~~~~vilVTs----a~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
.........+.++++-| .--+-.+...+++.|.+++.+-.
T Consensus 102 ~~~~~~~~~~dlvI~~S~sG~t~~~~~~~~~ak~~g~~vI~IT~ 145 (188)
T 1tk9_A 102 RQVEALGNEKDVLIGISTSGKSPNVLEALKKAKELNXLCLGLSG 145 (188)
T ss_dssp HHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHEEEEEEEECC
T ss_conf 99998379999899981898883157656777742414899837
No 61
>>1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} (A:144-230)
Probab=45.42 E-value=19 Score=15.77 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=33.0
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 9996252137777655543468205899999999998252005753389706888877888279999999974999
Q gi|255764508|r 69 IVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVE 144 (242)
Q Consensus 69 IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~ 144 (242)
++|.|||.. -+..|..+.+.|. ...++-.+......+..-++.+.+++.+.||.
T Consensus 3 v~VvGgG~~------------------G~E~A~~l~~~g~----~Vtii~~~~~~~~~~~~~~~~~~~~l~~~gI~ 56 (87)
T 1xhc_A 3 AIIIGGGFI------------------GLELAGNLAEAGY----HVKLIHRGAMFLGLDEELSNMIKDMLEETGVK 56 (87)
T ss_dssp EEEEECSHH------------------HHHHHHHHHHTTC----EEEEECSSSCCTTCCHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCC------------------CCHHHHHHHHCCC----CEEEEEEECCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 213467654------------------3112666865587----21564310244357648999999999865971
No 62
>>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} (A:107-232)
Probab=45.04 E-value=19 Score=15.73 Aligned_cols=92 Identities=11% Similarity=0.037 Sum_probs=54.3
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 999999982520057533897068888778882-7999999997499987811110146657779999999762368640
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
..+.+|+++|.. +|.+=++........+ -+..++.+.+.|++.. ..+....+.++.+. +++...+..+.
T Consensus 6 ~~a~~ll~~G~r-----~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~a 75 (126)
T 3hs3_A 6 KESIKLLSKKIE-----KVLIQHWPLSLPTIRERIEAMTAEASKLKIDYL--LEETPENNPYISAQ---SALNKSNQFDA 75 (126)
T ss_dssp HHHHHTSCTTCC-----EEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE--EEECCSSCHHHHHH---HHHHTGGGCSE
T ss_pred HHHHHHHHCCCC-----EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEE--EEECCCCCHHHHHH---HHHHCCCCCCE
T ss_conf 888777644872-----699982662100467776789988643475301--32035544899999---99854789988
Q ss_pred EEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 88534588999999999769818
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
++.++.......+..+++.|+.+
T Consensus 76 i~~~~d~~a~~v~~~l~~~g~~i 98 (126)
T 3hs3_A 76 IITVNDLYAAEIIKEAKRRNLKI 98 (126)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCT
T ss_pred EEECCCHHHHHHHHHHHHCCCCC
T ss_conf 99648588887989999749877
No 63
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:58-160,A:293-340)
Probab=44.96 E-value=19 Score=15.72 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 999999997499987811110146657779999999762368640885345889999999997698189984266
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+.+.+.+.+.|.. ++-..+.+..|......+.+.+++.+-++++......+......++.|+.++-.-.+.
T Consensus 21 ~gi~~~a~~~g~~----l~i~~~~~~~e~~~~~i~~l~~~~vDGIIi~~~~~~~~~~~~~l~~~~IPvV~id~~~ 91 (151)
T 1qpz_A 21 EAVEKNCFQKGYT----LILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGE 91 (151)
T ss_dssp HHHHHHHHHTTCE----EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHTTTTSCEEEEEESS
T ss_pred HHHHHHHHHCCCE----EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999998748958----9994155444899999999985488748981467872778888761488779833676
No 64
>>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} (A:106-241)
Probab=44.78 E-value=19 Score=15.70 Aligned_cols=95 Identities=12% Similarity=-0.019 Sum_probs=54.5
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHH---HHHHHHHHHHHH-HHHHHCCCC
Q ss_conf 9999982520057533897068888778882-79999999974999878111101---466577799999-997623686
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQ---SLDTFQNAQFSS-SMIKNMQGK 174 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~---s~nT~ena~~~~-~il~~~~~~ 174 (242)
+-.|+++|.. +|.+=|+........+ -+..++.+.+.|++.+....... ..+.++.+.... .........
T Consensus 9 ~~~L~~~G~r-----~I~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (136)
T 2qu7_A 9 TKRVLESTCK-----EVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGI 83 (136)
T ss_dssp HHHHHTSSCC-----CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCC-----CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 7777652256-----12589405310366776788887899839986743410244332136778899999998500256
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 4088534588999999999769818
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+.++++|......++..++..|+.+
T Consensus 84 ~ai~~~~d~~a~~~~~~l~~~g~~i 108 (136)
T 2qu7_A 84 KGIVATNHLLLLGALQAIKESEKEI 108 (136)
T ss_dssp CEEEECSHHHHHHHHHHHHHSSCCB
T ss_pred CEEEEEECCCCCCCCHHHHHCCCCC
T ss_conf 4267751222445311111003332
No 65
>>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:217-375)
Probab=44.33 E-value=19 Score=15.66 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=28.8
Q ss_pred CCHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHH
Q ss_conf 99878-111101466577799999997623686408853458899
Q gi|255764508|r 143 VERDD-IKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLK 186 (242)
Q Consensus 143 v~~~~-I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~ 186 (242)
+.+++ +++-..+..|.|......+.++++|. +++.||+..+-+
T Consensus 61 ~~~~d~vi~is~~g~t~e~~~~~~~~~k~~g~-~vi~it~~~~s~ 104 (159)
T 2zj3_A 61 VDKLMPVIMIIMRDHTYAKCQNALQQVVARQG-RPVVICDKEDTE 104 (159)
T ss_dssp CSTTSCEEEEECSSTTHHHHHHHHHHHHHTTC-CCEEEEETTCHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHHHHCCC-CEEEEECCCCHH
T ss_conf 07997189997573147889999999997799-689998787223
No 66
>>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} (A:)
Probab=43.91 E-value=14 Score=16.66 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=9.4
Q ss_pred CCCHHHHHHHHHHHCCCC
Q ss_conf 888279999999974999
Q gi|255764508|r 127 GLAESIVYNNKLLESGVE 144 (242)
Q Consensus 127 ~~~Ea~~m~~~l~~~Gv~ 144 (242)
...||..+.+.+.+.|++
T Consensus 55 ~~~~A~~~~~~lk~~~~~ 72 (81)
T 1uta_A 55 GKENADSTLNRLKMAGHT 72 (81)
T ss_dssp TTTHHHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHCCCC
T ss_conf 999999999999987998
No 67
>>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} (A:24-262)
Probab=43.06 E-value=20 Score=15.53 Aligned_cols=64 Identities=6% Similarity=0.015 Sum_probs=28.1
Q ss_pred HHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHH-------HHHHHHHHHHCCCEEE
Q ss_conf 999999749998781111014665777999999976236864088534588-------9999999997698189
Q gi|255764508|r 134 YNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYH-------LKRSQLYFQHFGINTK 200 (242)
Q Consensus 134 m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~H-------m~RA~~~f~~~gi~~~ 200 (242)
....+...|+....+..+....-..+... +.++.+...+++++++... +.+-..++++.|...+
T Consensus 72 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~i~~~~~~~~~ 142 (239)
T 1m32_A 72 XVEXAGLXGIAHHAYDCGEVARPDVQAID---AILNADPTISHIAXVHSETTTGXLNPIDEVGALAHRYGKTYI 142 (239)
T ss_dssp HHHHHHHHTCCEEEEECCTTSCCCHHHHH---HHHHHCTTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHH---HHHHCCCCCEEEEEECEECHHCEEEEHHHHHHHHHCCCCEEE
T ss_conf 99999984777534445778777702678---886069881599996503310353411134443313697068
No 68
>>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp} (A:)
Probab=42.79 E-value=16 Score=16.20 Aligned_cols=61 Identities=11% Similarity=0.036 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 68758999625213777765554346820589999999999825200575338970688887788827999999997499
Q gi|255764508|r 64 KDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGV 143 (242)
Q Consensus 64 ~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv 143 (242)
...+++|.++||.+ -...+.-+-+.++.. ..++.+. ......+.+.+++.+.++|+
T Consensus 28 ~~~kv~V~lSGG~D------------------S~~ll~l~~~~~~~~----~~~~~~~--~~~~~~~~~~a~~~a~~lgi 83 (249)
T 3fiu_A 28 PAEGFVIGLSGGID------------------SAVAASLAVKTGLPT----TALILPS--DNNQHQDMQDALELIEMLNI 83 (249)
T ss_dssp TCSEEEEECCSSHH------------------HHHHHHHHHHTTSCE----EEEECCC--TTSCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHH------------------HHHHHHHHHHHCCCC----EECCCCC--CCCHHHHHHHHHHHHHHCCC
T ss_conf 99839997779989------------------999999999829863----2100256--64047789999999862454
Q ss_pred CHHHH
Q ss_conf 98781
Q gi|255764508|r 144 ERDDI 148 (242)
Q Consensus 144 ~~~~I 148 (242)
+-..|
T Consensus 84 ~~~~i 88 (249)
T 3fiu_A 84 EHYTI 88 (249)
T ss_dssp EEEEC
T ss_pred CCCHH
T ss_conf 43114
No 69
>>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} (A:167-341)
Probab=42.12 E-value=21 Score=15.44 Aligned_cols=115 Identities=14% Similarity=0.047 Sum_probs=60.3
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCEEEEC-CCCCCCCCCCHHHHHHHHH
Q ss_conf 54568758999625213777765554346820589999-999999825200575338970-6888877888279999999
Q gi|255764508|r 61 QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIF-ETMRLYKSCKQHSMHCTIIIS-GGDPQKHGLAESIVYNNKL 138 (242)
Q Consensus 61 ~~~~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~-~a~~L~~~~~~~~~~~~ii~S-Gg~~~~~~~~Ea~~m~~~l 138 (242)
...++.|.+|++|-|-. ....|+. ++.. +..+ ...++.+- .-+ ...+.+.+
T Consensus 25 ~~~~~~~~vV~iGiGGS--------------~LG~~~l~~al~----~~~~-~~~~i~fldn~D--------p~~~~~~l 77 (175)
T 1t10_A 25 QTGKSIYNIVNIGIGGS--------------DLGPVMVTEALK----PFSK-RDLHCFFVSNVD--------GTHMAEVL 77 (175)
T ss_dssp TTSCBCCEEEEECCGGG--------------THHHHHHHHHTG----GGSC-SSSEEEEECCSS--------THHHHHHH
T ss_pred CCCCCCCEEEEECCCCC--------------HHHHHHHHHHHH----HHCC-CCCCEEECCCCC--------HHHHHHHH
T ss_conf 22112110466347734--------------189999999974----0200-452300068863--------89999986
Q ss_pred HHCCCCHHHHHCCHHHHHHHHHHHHHH---HHHHHCC-----------CCCEEEECCHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 974999878111101466577799999---9976236-----------86408853458899999999976981899842
Q gi|255764508|r 139 LESGVERDDIKLETQSLDTFQNAQFSS---SMIKNMQ-----------GKNIILVSSAYHLKRSQLYFQHFGINTKASCS 204 (242)
Q Consensus 139 ~~~Gv~~~~I~~e~~s~nT~ena~~~~---~il~~~~-----------~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~ 204 (242)
.++.-.+.-++.-.||-+|.|...+.+ +++.+.+ .++++.||++--.. ..+...+.++.+.|-
T Consensus 78 ~~l~~~~Tl~iviSKSg~T~ETl~n~~~~~~~l~~~~~~~~~~~~~~~~~~~vavT~~~~~~---~~~~~~~~~~f~~~~ 154 (175)
T 1t10_A 78 KQVNLEETIFIIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTEKV---REFGIDTVNMFAFWD 154 (175)
T ss_dssp TTSCGGGEEEEEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHEEEECSCHHHH---HHTTCCGGGEECCCT
T ss_pred HCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHH---HHCCCCCCCEEECCC
T ss_conf 31677420357536667664226679999999999866515650566766533202635789---852744013640346
Q ss_pred C
Q ss_conf 6
Q gi|255764508|r 205 D 205 (242)
Q Consensus 205 d 205 (242)
+
T Consensus 155 ~ 155 (175)
T 1t10_A 155 W 155 (175)
T ss_dssp T
T ss_pred C
T ss_conf 6
No 70
>>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} (A:211-368)
Probab=42.08 E-value=21 Score=15.44 Aligned_cols=32 Identities=3% Similarity=0.132 Sum_probs=13.0
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
Q ss_conf 111014665777999999976236864088534
Q gi|255764508|r 149 KLETQSLDTFQNAQFSSSMIKNMQGKNIILVSS 181 (242)
Q Consensus 149 ~~e~~s~nT~ena~~~~~il~~~~~~~vilVTs 181 (242)
++-..+..|.|......+.+++++. +++.||+
T Consensus 67 i~is~~g~t~e~~~~~~~~~k~~g~-~~i~it~ 98 (158)
T 1moq_A 67 IVVAPNNELLEKLKSNIEEVRARGG-QLYVFAD 98 (158)
T ss_dssp EEESCCHHHHHHHHHHHHHTGGGTC-CEEEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHCCC-EEEEEEC
T ss_conf 9970586688999999999996499-2999966
No 71
>>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:450-608)
Probab=41.79 E-value=21 Score=15.41 Aligned_cols=17 Identities=12% Similarity=-0.177 Sum_probs=7.8
Q ss_pred HHHHHHHHHCCCEEEEE
Q ss_conf 99999999769818998
Q gi|255764508|r 186 KRSQLYFQHFGINTKAS 202 (242)
Q Consensus 186 ~RA~~~f~~~gi~~~p~ 202 (242)
.+....+++.|.+++..
T Consensus 81 ~~~~~~ak~~g~~vi~i 97 (159)
T 2bpl_A 81 KSNIEEVRARGGQLYVF 97 (159)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
T ss_conf 99999999669959999
No 72
>>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor; HET: T6P; 2.50A {Escherichia coli} (A:99-223)
Probab=41.58 E-value=21 Score=15.39 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=58.4
Q ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 99999982520057533897068888778882--7999999997499987811110146657779999999762368640
Q gi|255764508|r 99 ETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 99 ~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
.+-.|.++|.. +|.+-+|......... .+..++.+.+.|++... ....++.+............ ..+.
T Consensus 8 a~~~l~~~G~r-----~i~~i~~~~~~~~~~~~R~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~a 77 (125)
T 1byk_A 8 LMQRLYDQGHR-----NISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA----ALPGLAMKQGYENVAKVITP-ETTA 77 (125)
T ss_dssp HHHHHHHTTCC-----CEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE----ECCCSCHHHHHHHSGGGCCT-TCCE
T ss_pred HHHHHHHHCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----CCCCCCHHHHHHHHHHHHCC-CCCE
T ss_conf 99999985114-----43235766676507777767799999973997620----13778789999999997135-6760
Q ss_pred EEECCHHHHHHHHHHHHHCCCE---EEEEE
Q ss_conf 8853458899999999976981---89984
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGIN---TKASC 203 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~---~~p~~ 203 (242)
+++++......++..++..|-+ ++++-
T Consensus 78 i~~~~d~~A~~~~~~l~~~gp~di~iv~fd 107 (125)
T 1byk_A 78 LLCATDTLALGASKYLQEQRIDTLQLASVG 107 (125)
T ss_dssp EEESSHHHHHHHHHHHHHTTCCSCEEEEEC
T ss_pred ECCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 011324667568999976086522236759
No 73
>>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} (A:183-413)
Probab=40.18 E-value=18 Score=15.92 Aligned_cols=63 Identities=11% Similarity=-0.011 Sum_probs=32.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 58999625213777765554346820589999999999825200575338970-68888778882799999999749998
Q gi|255764508|r 67 NIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIIS-GGDPQKHGLAESIVYNNKLLESGVER 145 (242)
Q Consensus 67 d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~S-Gg~~~~~~~~Ea~~m~~~l~~~Gv~~ 145 (242)
-++|.++||.+ -...+.-+.+.+.... .+.+. |+ .....+.+..++.+..+|++-
T Consensus 7 kvvv~~SGG~D------------------S~~ll~l~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~a~~l~~~~ 62 (231)
T 2c5s_A 7 KVMVLLSGGID------------------SPVAAYLTMKRGVSVE---AVHFHSPP---FTSERAKQKVIDLAQELTKYC 62 (231)
T ss_dssp EEEEECCSSSH------------------HHHHHHHHHHBTEEEE---EEEEECTT---TSCHHHHHHHHHHHHHHGGGS
T ss_pred CEEEEECCCCH------------------HHHHHHHHHHCCCCEE---EEEEECCC---CCCHHHHHHHHHHHHHCCCCE
T ss_conf 28999357863------------------9999999997499779---99997899---898789999999999839971
Q ss_pred HHHHCCHH
Q ss_conf 78111101
Q gi|255764508|r 146 DDIKLETQ 153 (242)
Q Consensus 146 ~~I~~e~~ 153 (242)
..+-+...
T Consensus 63 ~~~~~~~~ 70 (231)
T 2c5s_A 63 KRVTLHLV 70 (231)
T ss_dssp SCEEEEEE
T ss_pred EEEEEEEE
T ss_conf 55655774
No 74
>>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} (A:105-236)
Probab=39.89 E-value=23 Score=15.22 Aligned_cols=98 Identities=7% Similarity=-0.051 Sum_probs=57.4
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCH-HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 9999982520057533897068888778882-799999999749998781111014665777999999976236864088
Q gi|255764508|r 100 TMRLYKSCKQHSMHCTIIISGGDPQKHGLAE-SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIIL 178 (242)
Q Consensus 100 a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E-a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vil 178 (242)
+-.|.+.|..+ .++.+-+|........| -+..++.+.+.|++...+...+.+.+...++. ..++..++.-+.++
T Consensus 9 ~~~L~~~g~~~---~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ai~ 83 (132)
T 2dri_A 9 GDYIAKKAGEG---AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVM--QNLLTAHPDVQAVF 83 (132)
T ss_dssp HHHHHHHHCTT---CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCHHHHHHHH--HHHHHHCTTCCEEE
T ss_pred HHHHHHHCCCC---CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHH--HHHHHCCCCCEEEE
T ss_conf 99999967999---56999948876638999987666665213455522442011111120046--67642256842563
Q ss_pred ECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 534588999999999769818998
Q gi|255764508|r 179 VSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 179 VTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
..++.....++...++.|.+-+++
T Consensus 84 ~~~~~~a~g~~~~l~~~g~~di~i 107 (132)
T 2dri_A 84 AQNDEMALGALRALQTAGKSDVMV 107 (132)
T ss_dssp ESSHHHHHHHHHHHHHHTCCSCEE
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 267688888999999848998775
No 75
>>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=39.58 E-value=23 Score=15.19 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCC---CEEEEC----CHHHHHHHHHHHHHCCCEE
Q ss_conf 466577799999997623686---408853----4588999999999769818
Q gi|255764508|r 154 SLDTFQNAQFSSSMIKNMQGK---NIILVS----SAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 154 s~nT~ena~~~~~il~~~~~~---~vilVT----sa~Hm~RA~~~f~~~gi~~ 199 (242)
...++++....-+.+.+.+.+ ++.+++ +.-++......+.+.|.+.
T Consensus 74 ~~~~~~~~~~~i~~l~~~~~~~~i~~~~~~~~~d~~~ei~~~~~~~~~~~~~~ 126 (182)
T 3can_A 74 CDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHP 126 (182)
T ss_dssp HSSCSHHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 73025788866666766302312443022797599999999999998669984
No 76
>>2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} (A:118-252)
Probab=39.43 E-value=23 Score=15.17 Aligned_cols=66 Identities=3% Similarity=-0.195 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH-HHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 99999999749998781111014665777999-99997623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQF-SSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~-~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+..++.+.+.|.+..-.... ...++.+.... ...++..++....++.+++....=+....+..|+.
T Consensus 39 ~Gf~~~l~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~al~~~gi~ 105 (135)
T 2rjo_A 39 AGLDAALKKFPGIQLLDFQV-ADWNSQKAFPIXQAWXTRFNSKIKGVWAANDDXALGAIEALRAEGLA 105 (135)
T ss_dssp HHHHHHHHTCTTEEEEEEEE-CTTCHHHHHHHHHHHHHHHGGGEEEEEESSHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHCCCCCHHHC-CCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 89999998740145311001-54234899999999986467767689977868999999999976998
No 77
>>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} (A:780-1191)
Probab=37.69 E-value=11 Score=17.24 Aligned_cols=10 Identities=0% Similarity=-0.144 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999762
Q gi|255764508|r 161 AQFSSSMIKN 170 (242)
Q Consensus 161 a~~~~~il~~ 170 (242)
.....+.+++
T Consensus 270 l~~v~~~~~~ 279 (412)
T 1ea0_A 270 LSEVHQVLTL 279 (412)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 78
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:122-263)
Probab=37.22 E-value=25 Score=14.95 Aligned_cols=98 Identities=8% Similarity=-0.043 Sum_probs=54.4
Q ss_pred HHHHHHHCCCCCC-CCEE-EECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 9999982520057-5338-9706888877888279999999974999878111101466577799999997623686408
Q gi|255764508|r 100 TMRLYKSCKQHSM-HCTI-IISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177 (242)
Q Consensus 100 a~~L~~~~~~~~~-~~~i-i~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vi 177 (242)
+-.|.+.|..+.. ..++ +++|.........=-+..++.+.+.|.+....+. ....+..+-.....+++..++..+.+
T Consensus 10 ~~~L~~~G~r~~~~~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ai 88 (142)
T 3h75_A 10 KELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLV-YGEWNRERAYRQAQQLLKRYPKTQLV 88 (142)
T ss_dssp HHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEE-ECTTCHHHHHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHH-HHCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 99998635553388647999957867727777666553344307875411000-11111479999999999749997399
Q ss_pred EECCHHHHHHHHHHHHHCCCE
Q ss_conf 853458899999999976981
Q gi|255764508|r 178 LVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 178 lVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+++.....+...++..|+.
T Consensus 89 ~~~~d~~a~g~~~~l~~~g~~ 109 (142)
T 3h75_A 89 WSANDEXALGAXQAARELGRK 109 (142)
T ss_dssp EESSHHHHHHHHHHHHHTTCC
T ss_pred EECCHHHHHHHHHHHHHCCCC
T ss_conf 988779999999999975999
No 79
>>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus HB8} (A:147-311)
Probab=36.43 E-value=7.1 Score=18.53 Aligned_cols=135 Identities=15% Similarity=0.084 Sum_probs=60.3
Q ss_pred CCCCEEEEECC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 68758999625--2137777655543468205899999999998252005753389706888877888279999999974
Q gi|255764508|r 64 KDGNIIVLLGN--GTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLES 141 (242)
Q Consensus 64 ~~~d~IVVLGg--G~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~ 141 (242)
++.|.|+++|. |.... .....+.............+.+.+..-- ..+.-.+.-.....+|+.- ..+.+...
T Consensus 3 ~~GD~Ii~tg~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~a~~DiSdGg-l~~la~~s 75 (165)
T 2yxz_A 3 LPGDLLYLAGDRWGRTGA-AIRAHYEGRSLEGFPKIREAAFYPLPRL-----ELLALSGLLRGSLDSSDGL-AETLWQLA 75 (165)
T ss_dssp CTTCEEEEESSCTTHHHH-HHHHHHHTCCCTTCHHHHHHHHCCCCCG-----GGGGGTTTCSEEEEESSCH-HHHHHHHH
T ss_pred CCCCCEEEECCCCCHHHH-HHHHHHHCCCCCCCHHHHHHHHCCCHHH-----HHHHHCCCCCCCCCCCCCC-HHHHHHHH
T ss_conf 123420770686420289-9999874676321025688873953789-----9875307542220122320-11146651
Q ss_pred --CC--CHHHHHCCHHHHHHHHHHHHHH-HHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEE--EECC
Q ss_conf --99--9878111101466577799999-997623686408853458899999999976981899--8426
Q gi|255764508|r 142 --GV--ERDDIKLETQSLDTFQNAQFSS-SMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKA--SCSD 205 (242)
Q Consensus 142 --Gv--~~~~I~~e~~s~nT~ena~~~~-~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p--~~~d 205 (242)
|+ +.+++-..+......++.-... .++........+++.++-+-.+....+++.|+++.. .-++
T Consensus 76 ~~g~~i~~~~~p~~~~~~~~~~~~~~~~~~~l~~g~~~~ll~~v~~~~~~~i~~~~~~~g~~~~~IG~V~~ 146 (165)
T 2yxz_A 76 DLGVGVEVEALPLYPDVLAFAGSEEAALELVLYGGEEFEAVLVVPQEGAAAVEARAKAKGLPLFRAGRVVA 146 (165)
T ss_dssp TTTCEEEECCCCCCHHHHHHHSSHHHHHHHHHSCCCCCEEEEEECSTTHHHHHHHHHHTTCCEEEEEEEES
T ss_pred CCCHHHCHHHHHCCHHHHHHHHCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 43201023343048778998750016799884268871799998789999999999875999899999984
No 80
>>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242)
Probab=35.21 E-value=27 Score=14.75 Aligned_cols=74 Identities=11% Similarity=0.025 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHCCCCHHH-HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 88279999999974999878-1111014665777999999976236864088534588999999999769818998426
Q gi|255764508|r 128 LAESIVYNNKLLESGVERDD-IKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSD 205 (242)
Q Consensus 128 ~~Ea~~m~~~l~~~Gv~~~~-I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d 205 (242)
..-.+..++.+.+.|+.--. ........ .+++. ..-+++.+.+-++++++.-...+....++++|++..-+.++
T Consensus 30 ~~~~~~~~~~l~~~G~~iv~~~~~~~~~~-d~~~~---i~~i~~~~~d~v~~~~~~~~~~~i~~~~~~~G~~~~~~~~~ 104 (119)
T 3hut_A 30 LSSAQAFRKAFELRGGAVVVNEEVPPGNR-RFDDV---IDEIEDEAPQAIYLAXAYEDAAPFLRALRARGSALPVYGSS 104 (119)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTCC-CCHHH---HHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCCEEECG
T ss_pred HHHHHHHHHHHHCCCCEEEEEEECCCCCC-CHHHH---HHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 89999986445406978999995599873-11589---99998659999999736688999999999819998656420
No 81
>>1ad1_A DHPS, dihydropteroate synthetase; transferase, APO form, complex with OH-CH2-pterin-pyrophosphate; 2.20A {Staphylococcus aureus} (A:)
Probab=34.80 E-value=27 Score=14.71 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHCCCCHHHHHCCHH---HHHHHHHHHHHHHHHHHC
Q ss_conf 999999974999878111101---466577799999997623
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQ---SLDTFQNAQFSSSMIKNM 171 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~---s~nT~ena~~~~~il~~~ 171 (242)
...+.+.+.||++++|++|+- +.+..+|....+++.+..
T Consensus 148 ~~~~~~~~~Gi~~~~IiiDPg~gf~~~~~~~~~~~~~~~~~~ 189 (266)
T 1ad1_A 148 AQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELV 189 (266)
T ss_dssp HHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999999851145235886157674423110799998877764
No 82
>>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} (H:)
Probab=34.11 E-value=28 Score=14.63 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-------CH--HHHHHHHHHHCCCCHHHHHCCHHHH
Q ss_conf 346820589999999999825200575338970688887788-------82--7999999997499987811110146
Q gi|255764508|r 87 IEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGL-------AE--SIVYNNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 87 ~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-------~E--a~~m~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
.++...+...+.+-++..+..+ ..+|.+.|- ....+. ++ |...++++...|++.++|.....+.
T Consensus 15 ~~l~~~~~~~L~~ia~~l~~~p----~~~i~I~Gh-td~~g~~~~n~~LS~~RA~aV~~~l~~~g~~~~ri~~~g~G~ 87 (118)
T 2hqs_H 15 YDIRSDFAQMLDAHANFLRSNP----SYKVTVEGH-ADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGK 87 (118)
T ss_dssp CCCCGGGHHHHHHHHHHHHHCT----TCCEEEEEC-CCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHHHHCC----CCEEEEEEC-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 6459889999999999997699----948999842-332321036665889988768999997598434069998255
No 83
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:113-245)
Probab=32.97 E-value=29 Score=14.52 Aligned_cols=65 Identities=5% Similarity=0.023 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 9999999974999878111101466577799999997623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+..++.+.+.+...+.+...+. +..+-.....+++..++..+.++.+++....-+...+++.|+.
T Consensus 39 ~Gf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ 103 (133)
T 3brs_A 39 EGLKIGLSDDSNKIEAIYYCDS--NYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLE 103 (133)
T ss_dssp HHHHHHHGGGGGGEEEEEECTT--CHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHCCCCCHHHHHHH--CHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 6499999863333420243211--2089999999765218752134215527899999999974986
No 84
>>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus HB8} (A:43-204)
Probab=32.45 E-value=30 Score=14.46 Aligned_cols=75 Identities=8% Similarity=-0.009 Sum_probs=46.7
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH---HHHHHC----CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 79999999974999878111101466577799999---997623----68640885345889999999997698189984
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS---SMIKNM----QGKNIILVSSAYHLKRSQLYFQHFGINTKASC 203 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~---~il~~~----~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~ 203 (242)
.+.+.+.+....-...-++.-.+|-+|.|...+.+ +.+.+. ..++++.||++---. .....++.+++..+.|
T Consensus 61 ~~~~~~~l~~l~~~~TlviviSkSG~T~ET~~~~~~~~~~~~~~~~~~~~~~~v~iT~~~s~~-l~~~~~~~~~~~~~~~ 139 (162)
T 1zzg_A 61 PEPILRLLRTLDPRKTLVNAVSKSGSTAETLAGLAVFLKWLKAHLGEDWRRHLVVTTDPKEGP-LRAFAEREGLKAFAIP 139 (162)
T ss_dssp HHHHHHHHHHSCGGGEEEEEEESSSCCHHHHHHHHHHHHHHHHHHGGGGGGGEEEEECSSSSH-HHHHHHHHTCEEEECC
T ss_pred HHHHHHHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCHHH-HHHHHHHHHHHHEECC
T ss_conf 899999998368134189984699887037899999999987532516664403220330679-9998765224421134
Q ss_pred CCC
Q ss_conf 266
Q gi|255764508|r 204 SDY 206 (242)
Q Consensus 204 ~d~ 206 (242)
.+.
T Consensus 140 ~~v 142 (162)
T 1zzg_A 140 KEV 142 (162)
T ss_dssp TTC
T ss_pred CCC
T ss_conf 535
No 85
>>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphatase, transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli K12} (A:205-404)
Probab=32.00 E-value=30 Score=14.41 Aligned_cols=59 Identities=15% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE-ECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 87589996252137777655543468205899999999998252005753389-70688887788827999999997499
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTII-ISGGDPQKHGLAESIVYNNKLLESGV 143 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii-~SGg~~~~~~~~Ea~~m~~~l~~~Gv 143 (242)
+..++|.++||.+ -...+..+.+....+. ..+. ..|.. ....+.+..++....+|+
T Consensus 23 ~~kvvv~~SGG~D------------------S~~~l~ll~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~i 79 (200)
T 1gpm_A 23 DDKVILGLSGGVD------------------SSVTAMLLHRAIGKNL--TCVFVDNGLL---RLNEAEQVLDMFGDHFGL 79 (200)
T ss_dssp TCEEEEECCSSHH------------------HHHHHHHHHHHHGGGE--EEEEEECSCS---CTTHHHHHHHHHTTTTCC
T ss_pred CCEEEEEECCCCC------------------HHHHHHHHHHHHCCEE--EEEEECCCCC---CCCCHHHHHHHHHHCCCC
T ss_conf 8448884057852------------------4999999987605417--9999357764---478779999999760588
Q ss_pred CHH
Q ss_conf 987
Q gi|255764508|r 144 ERD 146 (242)
Q Consensus 144 ~~~ 146 (242)
+-.
T Consensus 80 ~~~ 82 (200)
T 1gpm_A 80 NIV 82 (200)
T ss_dssp CEE
T ss_pred CEE
T ss_conf 459
No 86
>>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide oxidoreductase; 2.00A {Vibrio cholerae} (A:63-146)
Probab=31.50 E-value=31 Score=14.36 Aligned_cols=78 Identities=8% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 58999999999982520057533897068888778882799999999749998781111014665777999999976236
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQ 172 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~ 172 (242)
...|+.++++-.. ..+....+ |+-.-.......++.+.+++++.+.||++++-.--.+|.....-+....++.+..+
T Consensus 6 ~~ara~y~a~~lg--~~dk~~~~-iF~aih~~~~~l~~~~~i~~~~~~~Gvd~~~f~~a~~Sf~V~~~v~~a~~l~~~y~ 82 (84)
T 1bed_A 6 AMSKAYATMIALE--VEDKMVPV-MFNRIHTLRKPPKDEQELRQIFLDEGIDAAKFDAAYNGFAVDSMVRRFDKQFQDSG 82 (84)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHH-HHHHHTTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC--CHHHHHHH-HHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999954--01478999-99999875035220899999999859999999999828578999999999999809
Q ss_pred C
Q ss_conf 8
Q gi|255764508|r 173 G 173 (242)
Q Consensus 173 ~ 173 (242)
+
T Consensus 83 I 83 (84)
T 1bed_A 83 L 83 (84)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 87
>>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus HB8} PDB: 2yri_A* (A:18-251)
Probab=30.79 E-value=32 Score=14.28 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 77999999976236
Q gi|255764508|r 159 QNAQFSSSMIKNMQ 172 (242)
Q Consensus 159 ena~~~~~il~~~~ 172 (242)
.+.....++.++++
T Consensus 124 ~~i~~i~~~~~~~g 137 (234)
T 2yrr_A 124 NPAEAIGALAKEAG 137 (234)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCC
T ss_conf 74888876651378
No 88
>>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii OT3} PDB: 2z0c_A 3a4i_A (A:1-189)
Probab=30.60 E-value=32 Score=14.26 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 87589996252137777655543468205899999999998252005753389706888877888279999999974999
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVE 144 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~ 144 (242)
...++|.++||.+ -...+.-+.+....+. ..+.+--| ......+.+..++.+...|++
T Consensus 20 ~~~vvi~~SGG~D------------------S~~~l~ll~~~~~~~~--~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (189)
T 2dpl_A 20 DSKAIIALSGGVD------------------SSTAAVLAHKAIGDRL--HAVFVNTG--FLRKGEPEFVVKTFRDEFGMN 77 (189)
T ss_dssp TSCEEEECCSSHH------------------HHHHHHHHHHHHGGGE--EEEEEECS--CCCTTHHHHHHHHHTTTTCCE
T ss_pred CCCEEEEECCCHH------------------HHHHHHHHHHHHCCCE--EEEEECCC--CCCCCHHHHHHHHHHHCCCCC
T ss_conf 9989999068899------------------9999999999758877--99995898--788538999999654125742
Q ss_pred HH
Q ss_conf 87
Q gi|255764508|r 145 RD 146 (242)
Q Consensus 145 ~~ 146 (242)
-.
T Consensus 78 ~~ 79 (189)
T 2dpl_A 78 LH 79 (189)
T ss_dssp EE
T ss_pred EE
T ss_conf 48
No 89
>>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} (A:)
Probab=30.55 E-value=29 Score=14.53 Aligned_cols=43 Identities=21% Similarity=0.194 Sum_probs=29.1
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 389706888877888279999999974999878111101466577799999997
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMI 168 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il 168 (242)
-+|++||...+ +.+.+.+.+.|+| +-....||++-+....+..
T Consensus 77 ~iIltg~~~~~------~~v~~~a~~~~ip-----Il~t~~dt~~~a~~i~~~~ 119 (139)
T 2ioj_A 77 CLILTGNLEPV------QLVLTKAEERGVP-----VILTGHDTLTAVSRLESVF 119 (139)
T ss_dssp EEEEETTCCCC------HHHHHHHHHHTCC-----EEECSSCHHHHHHHHHTTC
T ss_pred EEEEECCCCCC------HHHHHHHHHCCCE-----EEEECCCHHHHHHHHHHHH
T ss_conf 99983998989------9999999777982-----9996787999999999986
No 90
>>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} (A:97-257,A:389-647)
Probab=29.95 E-value=33 Score=14.19 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCCC---EE--EECCHHHHHHHHHHHHH
Q ss_conf 88887788827999999997499987811-11014665777999999976236864---08--85345889999999997
Q gi|255764508|r 121 GDPQKHGLAESIVYNNKLLESGVERDDIK-LETQSLDTFQNAQFSSSMIKNMQGKN---II--LVSSAYHLKRSQLYFQH 194 (242)
Q Consensus 121 g~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~-~e~~s~nT~ena~~~~~il~~~~~~~---vi--lVTsa~Hm~RA~~~f~~ 194 (242)
|.+.....+|.+-.+-....+.-|..-.. ..+.| ..-++...+-+.+++.+.+. .| ..+|+.++.....+++.
T Consensus 187 g~~~y~~l~e~~r~~~L~~~L~~~r~~~~~~~~~s-~~~~~~l~~~~~i~~~g~~a~~~yIIsmt~s~sdiL~v~~L~k~ 265 (420)
T 1jqn_A 187 GIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPS-AETREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKE 265 (420)
T ss_dssp TSCCGGGSCHHHHHHHHHHHHHCSSCCSCSSCCCC-HHHHHHHHHHHHHHHSCTTSEEEEEEETCCSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCHHHEEHHCCCCCCHHHHHHHHHHH
T ss_conf 88770004878899999875235777877544456-78999999999999837665132000135782038999999998
Q ss_pred CCC----EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 698----1899842664431113754578898999999999999999
Q gi|255764508|r 195 FGI----NTKASCSDYLNAYYSIIPLSANFYLTELALKEYIGILIAY 237 (242)
Q Consensus 195 ~gi----~~~p~~~d~~~~~~~~~p~~~~l~~~~~~~~E~ig~l~~~ 237 (242)
.|. +++|.-- +...|.....++++++..-+|+
T Consensus 266 ~g~~~~i~ivPLFE-----------Ti~dL~~a~~il~~ll~~p~yr 301 (420)
T 1jqn_A 266 AGIGFAMPVAPLFE-----------TLDDLNNANDVMTQLLNIDWYR 301 (420)
T ss_dssp TTCCSCCCEEEEEC-----------SHHHHHHHHHHHHHHHHSHHHH
T ss_pred HCCCCCCCCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHH
T ss_conf 39876667677407-----------4999984499999996588999
No 91
>>1acv_A DSBA; disulfide oxidoreductase, thioredoxin fold, redox-active center; 1.90A {Escherichia coli} (A:65-148)
Probab=29.93 E-value=33 Score=14.19 Aligned_cols=77 Identities=5% Similarity=0.104 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 58999999999982520057533897068888778882799999999749998781111014665777999999976236
Q gi|255764508|r 93 SYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQ 172 (242)
Q Consensus 93 ~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~ 172 (242)
...|+-++++.... .+....++ +-. ......+...+.+++++.+.||++++..--.+|...-.-.....++.+..+
T Consensus 7 ~~arayy~~~~lg~--~dk~~~~i-F~a-ih~~~~l~~~~~i~~~~~~~Gvd~~kf~~~~nSf~V~~~v~~a~~l~~~y~ 82 (84)
T 1acv_A 7 DLTQAWAVAMALGV--EDKVTVPL-FEG-VQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQ 82 (84)
T ss_dssp HHHHHHHHHHHHTC--HHHHHHHH-HHH-HHTSCCCCSHHHHHHHHHHTTCCHHHHHHHHHCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH--HHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999887654--44578887-665-542100012679999877624899999999738899999999999999819
Q ss_pred C
Q ss_conf 8
Q gi|255764508|r 173 G 173 (242)
Q Consensus 173 ~ 173 (242)
+
T Consensus 83 I 83 (84)
T 1acv_A 83 L 83 (84)
T ss_dssp C
T ss_pred C
T ss_conf 8
No 92
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:1-109,A:242-289)
Probab=29.16 E-value=34 Score=14.11 Aligned_cols=73 Identities=8% Similarity=0.025 Sum_probs=45.0
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 79999999974999878111101466577799999997623686408853458899999999976981899842664
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYL 207 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~ 207 (242)
.+.+.+.+.+.|+. ++-..+.+..+......+.+.+++.+-++++....-..+....+++.|+.++-+-....
T Consensus 26 ~~gi~~~a~~~g~~----v~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~~~l~~~~iPvV~id~~~~ 98 (157)
T 1dbq_A 26 IEAVEKNCFQKGYT----LILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEA 98 (157)
T ss_dssp HHHHHHHHHHHTCE----EEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSC
T ss_pred HHHHHHHHHHCCCE----EEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999999986999----99996899989999999998845876688426556505789998606996899850368
No 93
>>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I (A:1-43,A:166-287)
Probab=28.84 E-value=34 Score=14.07 Aligned_cols=16 Identities=6% Similarity=0.071 Sum_probs=8.2
Q ss_pred CCCEEEECCHHHHHHH
Q ss_conf 8640885345889999
Q gi|255764508|r 173 GKNIILVSSAYHLKRS 188 (242)
Q Consensus 173 ~~~vilVTsa~Hm~RA 188 (242)
..++..|-+..+=--|
T Consensus 102 ~~~V~mvGDG~ND~~a 117 (165)
T 3a1c_A 102 KEVVAFVGDGINDAPA 117 (165)
T ss_dssp TCCEEEEECTTTCHHH
T ss_pred CCEEEEECCCCCCHHH
T ss_conf 9988996688665988
No 94
>>3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocarbons catabolism; HET: FAD; 1.80A {Pseudomonas putida} (A:118-237)
Probab=28.80 E-value=34 Score=14.07 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=31.3
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCC
Q ss_conf 875899962521377776555434682058999999999982520057533897068888778882--799999999749
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESG 142 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~G 142 (242)
...-++|.|||.. =+..|..+.+.|. ...++..+........++ +..+.+.+.+.|
T Consensus 25 ~~k~vvViGgG~~------------------g~E~A~~l~~~g~----~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~~g 82 (120)
T 3ef6_A 25 SATRLLIVGGGLI------------------GCEVATTARKLGL----SVTILEAGDELLVRVLGRRIGAWLRGLLTELG 82 (120)
T ss_dssp TTCEEEEECCSHH------------------HHHHHHHHHHTTC----EEEEECSSSSSSHHHHCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCC------------------CHHHHHHHHHCCC----EEEEEECCCCCCCCCCCHHHHCCCHHHHHHHE
T ss_conf 6742589456520------------------0134778974696----77676136520122111011002003334422
Q ss_pred CC
Q ss_conf 99
Q gi|255764508|r 143 VE 144 (242)
Q Consensus 143 v~ 144 (242)
|+
T Consensus 83 V~ 84 (120)
T 3ef6_A 83 VQ 84 (120)
T ss_dssp CE
T ss_pred EE
T ss_conf 43
No 95
>>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} (A:1-162)
Probab=28.42 E-value=35 Score=14.02 Aligned_cols=86 Identities=5% Similarity=-0.094 Sum_probs=61.8
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 38970688887788827999999997499987811110146657779999999762368640885345889999999997
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQH 194 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~ 194 (242)
.+++++..... .-.+...+.|.+.|+.. .....+..|.++.....+..++.+.+-++-|=..-=|--|+..+-.
T Consensus 37 ~livtd~~~~~---~~~~~~~~~L~~~~i~~---~~~~~~~~~~~~v~~~~~~~~~~~~d~iiaiGGGs~~D~aK~~a~~ 110 (162)
T 3ce9_A 37 VSLYFGEGIYE---LFGETIEKSIKSSNIEI---EAVETVKNIDFDEIGTNAFKIPAEVDALIGIGGGKAIDAVKYXAFL 110 (162)
T ss_dssp EEEEEETTHHH---HHHHHHHHHHHTTTCEE---EEEEEECCCBHHHHHHHHTTSCTTCCEEEEEESHHHHHHHHHHHHH
T ss_pred EEEEECCCHHH---HHHHHHHHHHHHCCCEE---EEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 99998967889---99999999998779989---9985799998899999999864368889970577555531001345
Q ss_pred CCCEEEEEECCC
Q ss_conf 698189984266
Q gi|255764508|r 195 FGINTKASCSDY 206 (242)
Q Consensus 195 ~gi~~~p~~~d~ 206 (242)
.+...+.+||-.
T Consensus 111 ~~~~~i~vPTt~ 122 (162)
T 3ce9_A 111 RKLPFISVPTST 122 (162)
T ss_dssp HTCCEEEEESCC
T ss_pred CCCCEEEEECCC
T ss_conf 667539995145
No 96
>>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} (A:)
Probab=27.98 E-value=35 Score=13.97 Aligned_cols=12 Identities=17% Similarity=0.163 Sum_probs=4.6
Q ss_pred HHHHHHHHHCCC
Q ss_conf 999999997499
Q gi|255764508|r 132 IVYNNKLLESGV 143 (242)
Q Consensus 132 ~~m~~~l~~~Gv 143 (242)
..++..+.+.|+
T Consensus 31 ~~l~~~l~~~G~ 42 (172)
T 1mkz_A 31 HYLRDSAQEAGH 42 (172)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
T ss_conf 999999998599
No 97
>>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} (A:1-121,A:264-350)
Probab=27.97 E-value=35 Score=13.97 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 827999999997499987811110146657779999999762-368640885345889999999997698189984266
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKN-MQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~-~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
.-++.|++.+.++|+. +.+-+...|..........++.. .+.+-++++....-...+...+++.|+.++.+-++.
T Consensus 21 ~v~~gie~aA~~~G~~---l~v~~s~~d~~~q~~~ie~lia~~~~vD~Iii~p~~~~~~~~i~~a~~~gIPVV~ids~l 96 (208)
T 3h75_A 21 SYSQFXQAAARDLGLD---LRILYAERDPQNTLQQARELFQGRDKPDYLXLVNEQYVAPQILRLSQGSGIKLFIVNSPL 96 (208)
T ss_dssp HHHHHHHHHHHHHTCE---EEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred HHHHHHHHHHHHCCCE---EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999999999973998---999948999999999999998479986999977842036999999997799499926655
No 98
>>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Bacillus stearothermophilus} (A:46-219)
Probab=27.46 E-value=36 Score=13.92 Aligned_cols=74 Identities=14% Similarity=-0.017 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH---HHHHHCCC-----CC-EEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 79999999974999878111101466577799999---99762368-----64-08853458899999999976981899
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS---SMIKNMQG-----KN-IILVSSAYHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~---~il~~~~~-----~~-vilVTsa~Hm~RA~~~f~~~gi~~~p 201 (242)
...+.+.+.++...+.-++.-.||-+|.|...+.+ +++++.+. ++ ++++|..--.. ...+++.++++.+
T Consensus 72 p~~~~~~l~~l~~~~Tl~iviSKSG~T~ET~~~~~~~~~~l~~~~~~~~~~~~~~v~tt~~~~~l--~~~a~~~~~~~f~ 149 (174)
T 1b0z_A 72 STYISHLLDVLEGKDLSINVISKSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGAL--KKLADQEGYETFV 149 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHGGGEEEEECSSCSHH--HHHHHHHTCEEEE
T ss_pred HHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCEECCCCCHHHHH--HHHHHHHHHHHHH
T ss_conf 79999998324777603898449998667888899999999873042666526110233313344--4321267766665
Q ss_pred EECCC
Q ss_conf 84266
Q gi|255764508|r 202 SCSDY 206 (242)
Q Consensus 202 ~~~d~ 206 (242)
.|.+-
T Consensus 150 ~~~~V 154 (174)
T 1b0z_A 150 IPDNI 154 (174)
T ss_dssp CCTTB
T ss_pred HHHHC
T ss_conf 42102
No 99
>>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} (A:1-132)
Probab=27.24 E-value=36 Score=13.89 Aligned_cols=65 Identities=8% Similarity=-0.074 Sum_probs=34.4
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 68758999625213777765554346820589999999999825200575338970688887788827999999997499
Q gi|255764508|r 64 KDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGV 143 (242)
Q Consensus 64 ~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv 143 (242)
...+++|.++||.+ -...+..+.+.+... ...+.-. .......+-+..++.+.+.|+
T Consensus 24 ~~~~v~v~~SGG~D------------------S~~~~~ll~~~~~~~----~~~~~~~-~~~~~~~~~~~a~~~a~~l~i 80 (132)
T 1xng_A 24 GFKKVVYGLSGGLD------------------SAVVGVLCQKVFKEN----AHALLMP-SSVSMPENKTDALNLCEKFSI 80 (132)
T ss_dssp TCCCEEEECCSSHH------------------HHHHHHHHHHHHGGG----EEEEECC-CSSSCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHH------------------HHHHHHHHHHHHHHC----CEEEECC-CCCCCCHHHHHHHHHHHHHHC
T ss_conf 99829997878889------------------999999999862433----0787225-301561133679999998531
Q ss_pred CHHHHHCC
Q ss_conf 98781111
Q gi|255764508|r 144 ERDDIKLE 151 (242)
Q Consensus 144 ~~~~I~~e 151 (242)
|-..+-++
T Consensus 81 ~~~~i~~~ 88 (132)
T 1xng_A 81 PYTEYSIA 88 (132)
T ss_dssp CEEECCCH
T ss_pred CCEEEEHH
T ss_conf 34000013
No 100
>>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:101-231)
Probab=27.18 E-value=36 Score=13.88 Aligned_cols=89 Identities=7% Similarity=-0.047 Sum_probs=51.2
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH--HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999825200575338970688887788827--99999999749998781111014665777999999976236864
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES--IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea--~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~ 175 (242)
..+-.|.++|..+ |.+=|+..... .++. ..+++.+.+.|++.+.....+.+. ....+.+...+..+
T Consensus 12 ~a~~~L~~~G~~~-----i~~i~~~~~~~-~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 79 (131)
T 3e61_A 12 LQAEVVRKGKGKN-----VLIVHENLLID-AFHQRVQGIKYILDQQRIDYKMLEATLLDN------DKKFIDLIKELSID 79 (131)
T ss_dssp HHHHHHHHTTCCS-----EEEEESCTTSH-HHHHHHHHHHHHHHC---CEEEEEGGGGGS------HHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCCE-----EEEECCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCH------HHHHHHHHHCCCCC
T ss_conf 9999998377604-----89961667665-123330679999998599821443022322------57899997446965
Q ss_pred EEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 08853458899999999976981
Q gi|255764508|r 176 IILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 176 vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.+++++......++..++..|+.
T Consensus 80 ai~~~~d~~a~~~~~~l~~~g~~ 102 (131)
T 3e61_A 80 SIICSNDLLAINVLGIVQRYHFK 102 (131)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCC
T ss_pred EEEECCHHHHHHHHHHHHHCCCC
T ss_conf 67402345452566766402446
No 101
>>3gnh_A L-lysine, L-arginine carboxypeptidase CC2672; N-methyl phosphonate derivative of L- arginine, hydrolase; HET: KCX M3R; 1.70A {Caulobacter crescentus CB15} (A:60-151,A:270-363)
Probab=26.92 E-value=37 Score=13.85 Aligned_cols=89 Identities=6% Similarity=-0.101 Sum_probs=58.6
Q ss_pred HHHCCCCCCCCEEEECCC-------CCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 982520057533897068-------8887788827999999997499987811110146657779999999762368640
Q gi|255764508|r 104 YKSCKQHSMHCTIIISGG-------DPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNI 176 (242)
Q Consensus 104 ~~~~~~~~~~~~ii~SGg-------~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~v 176 (242)
-++|..+ .++|+.||- .+.....--.+.+.+.+.+.|++. ..-+++...+++.....+.+.+.|. ++
T Consensus 63 i~~G~~~--GPri~~~G~~i~~~ggh~~~~~~~~~~~~~~~~~~~g~~~---~~~p~~~~~~~~~~~~~~~l~~~Gv-~i 136 (186)
T 3gnh_A 63 IDAGYVP--GPRIVTAAISFGATGGHCDSTFFYNTDYTQAEGKKNGVLE---DNLRKDRDIGELQRENFRKALKAGV-KM 136 (186)
T ss_dssp HHTTSSC--CCEEEECCSCEESTTSTTSCCSSSTHHHHHHHHHHHTCCH---HHHHHHHHHHHHHHHHHHHHHHHTC-EE
T ss_pred CCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC---CCCCCCCCCCCCCCCCHHHHHHCCC-CE
T ss_conf 1223344--4310001232222122221122301035665421035420---0002221012233321455653287-34
Q ss_pred EEECC-----HHHHHHHHHHHHHCCCE
Q ss_conf 88534-----58899999999976981
Q gi|255764508|r 177 ILVSS-----AYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 177 ilVTs-----a~Hm~RA~~~f~~~gi~ 198 (242)
.+=|+ .+++.|.+.++.+.|+.
T Consensus 137 ~lGTD~~~~~~~~~~~e~~~~~~~Glt 163 (186)
T 3gnh_A 137 VYGTDAGIYPHGDNAKQFAVMVRYGAT 163 (186)
T ss_dssp ECCCCBTTBCTTCGGGHHHHHHHTTCC
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCCC
T ss_conf 115666644443289999999984999
No 102
>>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, protein structure initiative, midwest center for structural genomics; 2.01A {Porphyromonas gingivalis} (A:)
Probab=26.58 E-value=37 Score=13.81 Aligned_cols=67 Identities=18% Similarity=0.242 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 6820589999999999825200575338970688887788827999999997499987811110146657779999999
Q gi|255764508|r 89 PSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSM 167 (242)
Q Consensus 89 ~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~i 167 (242)
.-+.+..-+.+-+...|.- +...|. ..++|-..|...+...|||++.+-+--++.+..|-.+...-+
T Consensus 10 imtf~g~el~aiikmak~m---------v~adgk---i~p~ei~~m~~e~~rfgi~~~q~~~ll~asd~~e~sqa~~li 76 (133)
T 2h5n_A 10 IMTFSGQELTAIIKMAKSM---------VMADGK---IKPAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALI 76 (133)
T ss_dssp CCCCCHHHHHHHHHHHHHH---------HHTTSC---CCHHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH---------HHCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 4775328799999999988---------341587---367898999999999887898999998702305688999999
No 103
>>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405)
Probab=26.29 E-value=38 Score=13.78 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 99999999998252005753389706888877888279999999974999
Q gi|255764508|r 95 SRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVE 144 (242)
Q Consensus 95 ~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~ 144 (242)
.-+..|.+|-+.++..+ . .++.-++--+.+..-++.+.+.+.+.||.
T Consensus 32 ~g~~~a~~~~~~~~~~~--v-~~~~~~~~~~~~~~l~~~l~~~~~~~GV~ 78 (199)
T 2gag_B 32 HGLATAYFLAKNHGITN--V-AVLEKGWLAGGHDHVAWAFARKANEMGVD 78 (199)
T ss_dssp HHHHHHHHHHHHHCCCC--E-EEECSSSTTCSHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHCCCCCE--E-EEECCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 99999999996698786--9-99838998865999999999999867989
No 104
>>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, cytoplasm, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} PDB: 3ifs_A* (A:50-222)
Probab=25.77 E-value=39 Score=13.72 Aligned_cols=74 Identities=14% Similarity=-0.004 Sum_probs=50.6
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHH---HHHHHCCC-----CCEEEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 79999999974999878111101466577799999---99762368-----64088534588999999999769818998
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSS---SMIKNMQG-----KNIILVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~---~il~~~~~-----~~vilVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
...+.+.+.++.-.+.-++.-.||-+|.|.+.+.+ +++++.+. ++++.||++--... ...+++.|+.+.+.
T Consensus 71 p~~~~~~l~~l~~~~Tl~iviSKSG~T~ET~~~~~~~~~~l~~~~~~~~~~~~~vaiT~~~s~~l-~~~a~~~~~~~f~~ 149 (173)
T 3ff1_A 71 STYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGAL-KQLATNEGYETFIV 149 (173)
T ss_dssp HHHHHHHHHHGGGCCEEEEEECSSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHEEEEECSSCSHH-HHHHHHHTCEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHCCEEEECCCCHHHH-HHHHHHCCCCEECC
T ss_conf 46899999731766755999989988776999999999999970473555447899736755678-98744013115516
Q ss_pred ECC
Q ss_conf 426
Q gi|255764508|r 203 CSD 205 (242)
Q Consensus 203 ~~d 205 (242)
|.+
T Consensus 150 ~~~ 152 (173)
T 3ff1_A 150 PDD 152 (173)
T ss_dssp CTT
T ss_pred CCC
T ss_conf 888
No 105
>>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} (A:1-48,A:160-197)
Probab=25.74 E-value=39 Score=13.72 Aligned_cols=66 Identities=8% Similarity=0.037 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 8279999999974999878111101466577799999997623686408853458899999999976981
Q gi|255764508|r 129 AESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
...+.+++++.+.||+++.-.--.+|...-.-.....++.+..+. +=--..-+-||+.++...|++
T Consensus 4 ~s~~dI~~~fa~~GVD~~kF~~aynSF~V~s~v~ka~~l~~~y~I----~g~lg~~lt~awa~a~~~~~e 69 (86)
T 1un2_A 4 RSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQL----GGDLGKDLTQAWAVAMALGVE 69 (86)
T ss_dssp SSHHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTC----SHHHHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHCCCH
T ss_conf 999999999998599999999997098999999999999999389----883379999999999986988
No 106
>>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485} (A:)
Probab=25.66 E-value=39 Score=13.71 Aligned_cols=97 Identities=7% Similarity=-0.078 Sum_probs=52.6
Q ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCCCCCC-CHHHHHHHHHHHCCCCH--HHHHCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999825200575338970688887788-82799999999749998--78111101466577799999997623686
Q gi|255764508|r 98 FETMRLYKSCKQHSMHCTIIISGGDPQKHGL-AESIVYNNKLLESGVER--DDIKLETQSLDTFQNAQFSSSMIKNMQGK 174 (242)
Q Consensus 98 ~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~-~Ea~~m~~~l~~~Gv~~--~~I~~e~~s~nT~ena~~~~~il~~~~~~ 174 (242)
..+-.|.+.|.. ++.+-++....... ......+..+...|.+. +.+...+......+.+......+......
T Consensus 115 ~~~~~L~~~G~~-----~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (287)
T 3bbl_A 115 QAVEYLIGRGHR-----RIAILAWPEDSRVGNDRLQGYLEAXQTAQLPIETGYILRGEGTFEVGRAXTLHLLDLSPERRP 189 (287)
T ss_dssp HHHHHHHHHTCC-----CEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSC
T ss_pred HHHHHHHCCCCC-----EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 663563214553-----389982687653022222455555540376432000112221100699999997420566784
Q ss_pred CEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 4088534588999999999769818
Q gi|255764508|r 175 NIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 175 ~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
..++++++.-...+...+++.|+.+
T Consensus 190 ~~i~~~~d~~a~g~~~~l~~~g~~v 214 (287)
T 3bbl_A 190 TAIXTLNDTXAIGAXAAARERGLTI 214 (287)
T ss_dssp SEEEESSHHHHHHHHHHHHHTTCCB
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 4897310554530567899739988
No 107
>>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} (A:133-297,A:449-707)
Probab=25.63 E-value=39 Score=13.70 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=53.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCCC---EE--EECCHHHHHHHHHHHHHCC-
Q ss_conf 87788827999999997499987811-11014665777999999976236864---08--8534588999999999769-
Q gi|255764508|r 124 QKHGLAESIVYNNKLLESGVERDDIK-LETQSLDTFQNAQFSSSMIKNMQGKN---II--LVSSAYHLKRSQLYFQHFG- 196 (242)
Q Consensus 124 ~~~~~~Ea~~m~~~l~~~Gv~~~~I~-~e~~s~nT~ena~~~~~il~~~~~~~---vi--lVTsa~Hm~RA~~~f~~~g- 196 (242)
.....+|.+-.+-....+--|..-+. ....|..| .+...+.+.+++.+.+- .| ..+|+.++.-...+++..|
T Consensus 194 ~Y~~l~e~~r~~~L~~~l~~~~p~~~~~~~~s~~~-~~~l~~~~~i~~~g~~ai~~yIISmt~s~sdiL~V~~L~k~~g~ 272 (424)
T 1jqo_A 194 SYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEI-ADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGV 272 (424)
T ss_dssp CSTTSCHHHHHHHHHHHHHCCSCCCCTTCCCCHHH-HHHHHHHHHHHHSCSTTEEEEEETTCCSTHHHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCC
T ss_conf 72237868899999998557887887643104579-99999999998527433243022067877889999999997298
Q ss_pred ---CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---8189984266443111375457889899999999999999
Q gi|255764508|r 197 ---INTKASCSDYLNAYYSIIPLSANFYLTELALKEYIGILIA 236 (242)
Q Consensus 197 ---i~~~p~~~d~~~~~~~~~p~~~~l~~~~~~~~E~ig~l~~ 236 (242)
++++|.-- +...|.....++++++..=+|
T Consensus 273 ~~~l~VvPLFE-----------Ti~dL~~a~~Il~~ll~~p~y 304 (424)
T 1jqo_A 273 RQPLPVVPLFE-----------RLADLQSAPASVERLFSVDWY 304 (424)
T ss_dssp SSCCCEEEEEC-----------SHHHHHTHHHHHHHHHTCHHH
T ss_pred CCCCCCCCCCC-----------CHHHHHHHHHHHHHHHHCHHH
T ss_conf 77767563114-----------599998539999999838277
No 108
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:107-223)
Probab=25.46 E-value=39 Score=13.68 Aligned_cols=49 Identities=12% Similarity=0.024 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEE
Q ss_conf 1014665777999999976236864088534588999999999769818
Q gi|255764508|r 151 ETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINT 199 (242)
Q Consensus 151 e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~ 199 (242)
+....+.-+......+.+........+++.+......++..++..|+++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~l~~~~~~g~~i 101 (117)
T 3jy6_A 53 SESSYNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLID 101 (117)
T ss_dssp CSSSCCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 3455317899999998764211000011222013443345666652257
No 109
>>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, structural genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A (A:374-511)
Probab=25.10 E-value=40 Score=13.64 Aligned_cols=64 Identities=11% Similarity=-0.059 Sum_probs=38.4
Q ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCC---CCEEEECCHHHH
Q ss_conf 575338970688887788827999999997499987811110146657779999999762368---640885345889
Q gi|255764508|r 111 SMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQG---KNIILVSSAYHL 185 (242)
Q Consensus 111 ~~~~~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~---~~vilVTsa~Hm 185 (242)
++.+||+.- .++....++....+||-+ ++-+...++.+......+.+.++|. ...++|+++..+
T Consensus 57 RP~~pI~a~--------T~~~~~~r~l~l~~GV~p---~~~~~~~~~~~~~~~~~~~~~~~g~~~~GD~vVvv~G~~~ 123 (138)
T 3gg8_A 57 RPMQPILAL--------SASESTIKHLQVIRGVTT---MQVPSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKE 123 (138)
T ss_dssp CCSSCEEEE--------ESCHHHHHHGGGSTTEEE---EECCC--CHHHHHHHHHHHHHHTTSCCTTCEEEEEEEC--
T ss_pred CCCCCEEEE--------CCCHHHHHHHHECCCEEE---EECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 979998998--------698799987644077699---9808989999999999999998699899698999947669
No 110
>>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structural genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} (A:109-244,A:291-303)
Probab=25.09 E-value=40 Score=13.64 Aligned_cols=67 Identities=3% Similarity=-0.033 Sum_probs=41.4
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHH-HHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 99999999749998781111014665777999999-97623686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSS-MIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~-il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+++.+.+.|.+.+.+.....+.++.+.+....+ +++.+..-+.++..++-.-.-+...++..|+.
T Consensus 39 ~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ 106 (149)
T 3d02_A 39 DLLVKYQKEHYPDXHEVTRRXPVAESVDDSRRTTLDLXKTYPDLKAVVSFGSNGPIGAGRAVKEKRAK 106 (149)
T ss_dssp HHHHHHHHHHCTTEEESSSCBSCTTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 99999997528865331156237865699999999998619985189956858999999999976999
No 111
>>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} (A:124-243)
Probab=25.05 E-value=40 Score=13.63 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=33.5
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCH--HHHHHHHHHHCC
Q ss_conf 875899962521377776555434682058999999999982520057533897068888778882--799999999749
Q gi|255764508|r 65 DGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAE--SIVYNNKLLESG 142 (242)
Q Consensus 65 ~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~E--a~~m~~~l~~~G 142 (242)
...-++|.|||.. =+.-|..+.+.|+ ...++..+........++ ++.+.+.+.+.|
T Consensus 25 ~~k~v~ViGgG~~------------------g~E~A~~~~~~g~----~v~ii~~~~~~~~~~~~~~~~~~~~~~l~~~g 82 (120)
T 2cdu_A 25 KAKTITIIGSGYI------------------GAELAEAYSNQNY----NVNLIDGHERVLYKYFDKEFTDILAKDYEAHG 82 (120)
T ss_dssp GCSEEEEECCSHH------------------HHHHHHHHHTTTC----EEEEEESSSSTTTTTSCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCEEE------------------CCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCE
T ss_conf 1132323221000------------------0122222111233----33222246521223334221101222212024
Q ss_pred CC
Q ss_conf 99
Q gi|255764508|r 143 VE 144 (242)
Q Consensus 143 v~ 144 (242)
|.
T Consensus 83 V~ 84 (120)
T 2cdu_A 83 VN 84 (120)
T ss_dssp CE
T ss_pred EE
T ss_conf 66
No 112
>>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, peroxisome; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* (A:1-42,A:142-188,A:288-351)
Probab=25.03 E-value=40 Score=13.63 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=22.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 8999625213777765554346820589999999999825200575338970
Q gi|255764508|r 68 IIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIIS 119 (242)
Q Consensus 68 ~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~S 119 (242)
-|+|+|+|+. -+..|+.|.++++.....+.+-+-
T Consensus 2 ~v~ViGAGvi------------------GlttAl~i~e~~~~~~~~~~v~i~ 35 (153)
T 3g3e_A 2 RVVVIGAGVI------------------GLSTALCIHERYHSVLQPLDIKVY 35 (153)
T ss_dssp EEEEECCSHH------------------HHHHHHHHHHHHTTTSSSCEEEEE
T ss_pred EEEEECHHHH------------------HHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 7999995099------------------999999999789942687357563
No 113
>>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str} (A:)
Probab=24.96 E-value=40 Score=13.62 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=49.3
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC-CCCC-----C-----CCCH--HHHH
Q ss_conf 899962521377776555434682058999999999982520057533897068-8887-----7-----8882--7999
Q gi|255764508|r 68 IIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGG-DPQK-----H-----GLAE--SIVY 134 (242)
Q Consensus 68 ~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg-~~~~-----~-----~~~E--a~~m 134 (242)
..|.+....... .....+...+...+.+=+++.+..+ ..+|.+.|= +..+ . ..++ |+..
T Consensus 45 ~~i~~~~~~~F~----~gs~~l~~~~~~~L~~ia~~l~~~~----~~~i~I~GhtD~~g~~~~~~~~~n~~LS~~RA~~V 116 (174)
T 3khn_A 45 ITLRVPSEVLFA----PGAVELAPGADRVLATLKDLFIRRR----EQNINIKGFTDDVQPSANARFKDNWEVSALRSVNV 116 (174)
T ss_dssp EEEEEEHHHHBC----TTCCSBCTTHHHHHHHHHHHHHHTT----TCEEEEEEECCSCCCCTTSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCEEC----CCCCCCCHHHHHHHHHHHHHHCCCC----CEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999946873246----9974029889999999987540387----42999974036766655664320136889999999
Q ss_pred HHHHHHCCCCHHHHHCCHHHH
Q ss_conf 999997499987811110146
Q gi|255764508|r 135 NNKLLESGVERDDIKLETQSL 155 (242)
Q Consensus 135 ~~~l~~~Gv~~~~I~~e~~s~ 155 (242)
++++.+.|++.++|.....+.
T Consensus 117 ~~~l~~~gi~~~ri~~~g~G~ 137 (174)
T 3khn_A 117 LRYFLGAGIEPARLTATGLGE 137 (174)
T ss_dssp HHHHHHTTCCGGGEEEEEEET
T ss_pred HHHHHHHCCCCCCEEEEEEEC
T ss_conf 999987147866679998424
No 114
>>3i45_A Twin-arginine translocation pathway signal protein; structural genomics, protein structure initiative; 1.36A {Rhodospirillum rubrum atcc 11170} (A:125-260,A:324-387)
Probab=24.43 E-value=41 Score=13.56 Aligned_cols=71 Identities=11% Similarity=-0.013 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 888279999999974999878111101466577799999997623686408853458899999999976981
Q gi|255764508|r 127 GLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 127 ~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
+.+-.+.+++.+.+.|+.-.-...+.-. .+..+.....+-+++.+.+-++++.+.-........++++|++
T Consensus 31 G~~~~~~f~~~l~~~G~~V~~~~~i~~~-~~~~d~~~~i~kik~a~pdvVi~~~~~~~a~~~ikqa~~~Gl~ 101 (200)
T 3i45_A 31 GQSAVARFKELLLAARPEVTFVAEQWPA-LYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLF 101 (200)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEECCC-TTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEEC-CCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 8999998887775236613688766402-6651167898888860983899993337899999999981887
No 115
>>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, F subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis W83} (A:152-290)
Probab=24.16 E-value=41 Score=13.53 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=10.6
Q ss_pred HHHHHHHHHCCCCHHHHHCC
Q ss_conf 99999999749998781111
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLE 151 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e 151 (242)
+.+++.|.+.|+++++|..|
T Consensus 117 ~~~~~~l~~~G~~~~~i~~E 136 (139)
T 2r6h_A 117 NAVKGXLENLGVPRNXLFFD 136 (139)
T ss_dssp HHHHHHHHHHTCCGGGEEEE
T ss_pred HHHHHHHHHCCCCHHHEEEE
T ss_conf 99999999859988997983
No 116
>>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} (A:)
Probab=23.93 E-value=42 Score=13.50 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCCHH-------------H-HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHH
Q ss_conf 7999999997499987-------------8-11110146657779999999762368640885345889999
Q gi|255764508|r 131 SIVYNNKLLESGVERD-------------D-IKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRS 188 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~-------------~-I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA 188 (242)
|..++..+...|++.. + ++.-+.|..|.| .....+.++++|. +++.||+..+-+=+
T Consensus 62 a~~~~~~l~~~g~~~~~~~~~~~~~~~~~dvvI~iS~sG~t~~-~~~~~~~ak~~g~-~vi~IT~~~~s~l~ 131 (200)
T 1vim_A 62 AKAFAMRLMHLGYTVYVVGETVTPRITDQDVLVGISGSGETTS-VVNISKKAKDIGS-KLVAVTGKRDSSLA 131 (200)
T ss_dssp HHHHHHHHHHTTCCEEETTSTTCCCCCTTCEEEEECSSSCCHH-HHHHHHHHHHHTC-EEEEEESCTTSHHH
T ss_pred HHHHCCCCCCCCCCCCCCCCHHHHEECCCCEEEEECCCCCCHH-HHHHHHHHHHHCC-CCEEEEECCCCCCC
T ss_conf 2331012223332222232103300025661565123322023-7999999986235-64366403554432
No 117
>>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, joint center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 1h0c_A* 1j04_A* (A:73-259)
Probab=23.81 E-value=42 Score=13.48 Aligned_cols=65 Identities=6% Similarity=-0.029 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH-------HHHHHHHHHHHCCCEEEE
Q ss_conf 999999974999878111101466577799999997623686408853458-------899999999976981899
Q gi|255764508|r 133 VYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAY-------HLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~-------Hm~RA~~~f~~~gi~~~p 201 (242)
.....+...|+....+-.++......+... +.+.+.+. +.+++|++. .+.+-....++.|..++-
T Consensus 40 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~i~~~~~~~~~g~~~~~~~i~~~~~~~~~~~i~ 111 (187)
T 3kgw_A 40 RAAEIADRIGARVHQMIKKPGEHYTLQEVE---EGLAQHKP-VLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLV 111 (187)
T ss_dssp HHHHHHHHTTCEEEEEECCTTCCCCHHHHH---HHHHHHCC-SEEEEESEETTTTEECCCTTHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCHHHHH---HHHHCCCC-CEEEEECEEEEEEECCCHHHHHHHHHHCCCEEEE
T ss_conf 899999980995022047888877989999---98745997-3899833133123137799999999874980799
No 118
>>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} (A:523-742,A:762-821)
Probab=23.80 E-value=41 Score=13.55 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=5.2
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 7999999997499
Q gi|255764508|r 131 SIVYNNKLLESGV 143 (242)
Q Consensus 131 a~~m~~~l~~~Gv 143 (242)
..-..+.+.+.|+
T Consensus 195 ~~e~a~~l~e~Gv 207 (280)
T 1gte_A 195 IVSIARAAKEGGA 207 (280)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999998599
No 119
>>3kg2_A Glutamate receptor 2; ION channel, membrane protein, alternative splicing, cell membrane, glycoprotein, ION transport, membrane; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} (A:108-263,A:347-379)
Probab=23.51 E-value=43 Score=13.45 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 78882799999999749998781111-01466577799999997623686408853458899999999976981
Q gi|255764508|r 126 HGLAESIVYNNKLLESGVERDDIKLE-TQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 126 ~~~~Ea~~m~~~l~~~Gv~~~~I~~e-~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.+....+.+.+.+.+.|+.-.....- .....+.++.....+.+++.+.+.+++.++..+..+-+..+.+.|+.
T Consensus 25 ~g~~~l~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~l~~i~~~~arVIIl~~~~~~~~~ll~~a~~~~l~ 98 (189)
T 3kg2_A 25 RGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKH 98 (189)
T ss_dssp GCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 53889999999999769989999987158887447799999987625998899993527878999999973778
No 120
>>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens} (A:39-171)
Probab=23.38 E-value=28 Score=14.61 Aligned_cols=59 Identities=7% Similarity=-0.046 Sum_probs=40.1
Q ss_pred CHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 98781111014665777999999976236864088534588999999999769818998
Q gi|255764508|r 144 ERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 144 ~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
+-+++++-+-.-+|-..+.+..+.+++.|.+.+.+.+-..--.|+...++..|++....
T Consensus 72 ~G~~VliVDDii~tG~T~~~~~~~l~~~ga~~v~~~vl~~~~~~~~~~l~~~~v~~~~l 130 (133)
T 2wns_A 72 PGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQAHGIRLHSV 130 (133)
T ss_dssp TTCBEEEEEEEESSSHHHHHHHHHHHHTTCBCCEEEEEEECCSSHHHHHHTTTCEEEEE
T ss_pred CCCEEEEEEEEEHHCHHHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHCCCCEEEE
T ss_conf 99999999865012567999999999879979999999978835589999769968996
No 121
>>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} (A:110-229)
Probab=22.77 E-value=44 Score=13.35 Aligned_cols=75 Identities=5% Similarity=-0.135 Sum_probs=50.4
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 99999999749998781111014665777999999976236864088534588999999999769818998426644
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLN 208 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~ 208 (242)
....+-+.+.|.....+. .....++.+.+....+.+-++++ .+++-+++-.-..++..++..|++++++-.|...
T Consensus 33 ~Gf~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~-d~I~~~nD~~A~g~~~a~~~~g~~ViG~d~~~~~ 107 (120)
T 2hqb_A 33 EGFVDGAKYXNESEAFVR-YVGEWTDADKALELFQELQKEQV-DVFYPAGDGYHVPVVEAIKDQGDFAIGYVGDQAD 107 (120)
T ss_dssp HHHHHHHHHTTCCEEEEE-ECSSSSCHHHHHHHHHHHHTTTC-CEEECCCTTTHHHHHHHHHHHTCEEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 899999874145416999-74882220479999999985055-4677505885558999999759745300366211
No 122
>>2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* (A:107-246)
Probab=22.68 E-value=44 Score=13.34 Aligned_cols=68 Identities=4% Similarity=-0.155 Sum_probs=42.8
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 999999997499987811110146657779999-9997623686408853458899999999976981899
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKA 201 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p 201 (242)
+...+.+.+.|..... ..... ..+.+.+... .++++..+..+.++.++..+...++...+..|.+-+.
T Consensus 45 ~gf~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~nd~~a~g~~~al~~~g~~di~ 113 (140)
T 2fn9_A 45 NGFHSVVDQYPEFKMV-AQQSA-EFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIY 113 (140)
T ss_dssp HHHHHHHTTSTTEEEE-EEEEC-TTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCE
T ss_pred HHHHHHHHHCCCCCCE-EEEEC-CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 8999998651455622-68833-300278999999998513222236765761003389999973746753
No 123
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237)
Probab=22.63 E-value=44 Score=13.34 Aligned_cols=70 Identities=1% Similarity=-0.035 Sum_probs=45.7
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 99999999749998781111014665777999999976236864088534588999999999769818998
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
..+.+.+.+.|.+.. +.......+..+.....++++..++....++..++.....+...+++.|.+-+++
T Consensus 39 ~Gf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~al~~~gp~di~i 108 (133)
T 2ioy_A 39 KGFDEAIAKYPDIKI-VAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQGIIV 108 (133)
T ss_dssp HHHHHHHTTCTTEEE-EEEEECTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHHHHHHHHHHTTCCCCEE
T ss_pred HHHHHHHHHCCCCCE-EEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 999999987899805-7775164117999999999985696983999678088887799999819998779
No 124
>>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A (A:173-284)
Probab=22.60 E-value=44 Score=13.33 Aligned_cols=65 Identities=3% Similarity=-0.069 Sum_probs=43.2
Q ss_pred HHHHCCCCHHHHH-CCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 9997499987811-11014665777999999976236864088534588999999999769818998
Q gi|255764508|r 137 KLLESGVERDDIK-LETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGINTKAS 202 (242)
Q Consensus 137 ~l~~~Gv~~~~I~-~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~ 202 (242)
++...|+..--++ ..+.+.=|-.......+.+++++. +++++.+.+.-+-+..+++..|+++++.
T Consensus 15 ~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~i-~~i~~e~~~~~~~~~~la~~~~~~~~~l 80 (112)
T 2prs_A 15 FEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKA-TCVFAEPQFRPAVVESVARGTSVRMGTL 80 (112)
T ss_dssp HHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTC-CEEEECTTSCSHHHHHHTTTSCCEEEEC
T ss_pred HHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHCCCCEEEE
T ss_conf 99973992556761145557788899999998773498-3899968889299999999809977984
No 125
>>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* (A:120-235)
Probab=22.43 E-value=45 Score=13.31 Aligned_cols=59 Identities=8% Similarity=0.100 Sum_probs=36.3
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCC--HHHHHHHHHHHC
Q ss_conf 687589996252137777655543468205899999999998252005753389706888877888--279999999974
Q gi|255764508|r 64 KDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLA--ESIVYNNKLLES 141 (242)
Q Consensus 64 ~~~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~--Ea~~m~~~l~~~ 141 (242)
+...-++|.|||. --+.-|..|.+.|. ...++..+...-....+ -++.+.+.+.+.
T Consensus 24 ~~~~~v~IiGgG~------------------~GiE~A~~l~~~g~----~v~li~~~~~~l~~~~~~~~~~~~~~~l~~~ 81 (116)
T 2gqw_A 24 RPQSRLLIVGGGV------------------IGLELAATARTAGV----HVSLVETQPRLMSRAAPATLADFVARYHAAQ 81 (116)
T ss_dssp CTTCEEEEECCSH------------------HHHHHHHHHHHTTC----EEEEEESSSSSSTTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCCC------------------CCCCCCCCCCCCEE----EEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 5676308972411------------------11111222122103----5776425550012246577899999986521
Q ss_pred CCC
Q ss_conf 999
Q gi|255764508|r 142 GVE 144 (242)
Q Consensus 142 Gv~ 144 (242)
||.
T Consensus 82 GV~ 84 (116)
T 2gqw_A 82 GVD 84 (116)
T ss_dssp TCE
T ss_pred CEE
T ss_conf 103
No 126
>>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydrolase., PSI-2; 1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A 1wvi_A 1ydf_A (A:1-73,A:184-264)
Probab=22.15 E-value=45 Score=13.27 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=45.6
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC-CHHHHHHHHHHHH
Q ss_conf 389706888877888279999999974999878111101466577799999997623686408853-4588999999999
Q gi|255764508|r 115 TIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVS-SAYHLKRSQLYFQ 193 (242)
Q Consensus 115 ~ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVT-sa~Hm~RA~~~f~ 193 (242)
-.++|++.+. ..+.+.+.+.++|++..---.-...-..++-+. +.++. ..+++++|- |.+| -..-++
T Consensus 40 ~~i~Tn~s~~-----~~~~~~~~l~~lgi~~~~~~~~~~~p~~~~~~~---~~~~~-~~~~~~~VgD~~~~---Di~~A~ 107 (154)
T 3epr_A 40 YMLVTNNTTR-----TPESVQEMLRGFNVETPLETIYTANAIIMNKAL---EILNI-PRNQAVMVGDNYLT---DIMAGI 107 (154)
T ss_dssp EEEEECCCSS-----CHHHHHHHHHTTTCCCCGGGEEEHSHHHHHHHH---HHHTS-CGGGEEEEESCTTT---HHHHHH
T ss_pred EEEEECCCCC-----CHHHHHHHHHHCCCCCCHHHCCCHCHHHHHHHH---HHHCC-CCCCEEEEECCCHH---HHHHHH
T ss_conf 8999389999-----999999987531655431210235205666555---65326-86608999799579---999999
Q ss_pred HCCCEEEEEECCCC
Q ss_conf 76981899842664
Q gi|255764508|r 194 HFGINTKASCSDYL 207 (242)
Q Consensus 194 ~~gi~~~p~~~d~~ 207 (242)
+.|+.++-+..++.
T Consensus 108 ~aG~~~v~v~~~~~ 121 (154)
T 3epr_A 108 NNDIDTLLVTTGFT 121 (154)
T ss_dssp HHTCEEEEETTSSS
T ss_pred HCCCCEEEECCCCC
T ss_conf 87998999899999
No 127
>>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:112-249)
Probab=22.03 E-value=45 Score=13.26 Aligned_cols=94 Identities=5% Similarity=-0.107 Sum_probs=53.4
Q ss_pred HHHHHCCCCCCCCEEEECCCCCCCCCCC-HHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHCCCCCEEEE
Q ss_conf 9998252005753389706888877888-27999999997499987811110146657779999-999762368640885
Q gi|255764508|r 102 RLYKSCKQHSMHCTIIISGGDPQKHGLA-ESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNMQGKNIILV 179 (242)
Q Consensus 102 ~L~~~~~~~~~~~~ii~SGg~~~~~~~~-Ea~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~~~~~vilV 179 (242)
.|.++|..+ .+|.+-+|........ --+.+++.+.+.|.+.. ..+.....+.+.+... ++++..+.....+++
T Consensus 16 ~L~~~g~~~---~~i~~i~g~~~~~~~~~R~~g~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~ 90 (138)
T 3l6u_A 16 LIKQTGRST---GRIVEITGTANVYTTNERHRGFLKGIENEPTLSI--VDSVSGNYDPVTSERVXRQVIDSGIPFDAVYC 90 (138)
T ss_dssp HHHHHSCSC---EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEE--EEEEECTTCHHHHHHHHHHHHHTTCCCSEEEE
T ss_pred HHHHCCCCC---CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCC--HHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 899728887---5089984899876899999853444554388530--01100121078899999863214788459997
Q ss_pred CCHHHHHHHHHHHHHCCCEEE
Q ss_conf 345889999999997698189
Q gi|255764508|r 180 SSAYHLKRSQLYFQHFGINTK 200 (242)
Q Consensus 180 Tsa~Hm~RA~~~f~~~gi~~~ 200 (242)
++......+...+++.|++-+
T Consensus 91 ~~d~~a~g~~~al~~~g~~di 111 (138)
T 3l6u_A 91 HNDDIAXGVLEALKKAKISGK 111 (138)
T ss_dssp SSHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHCCCCCC
T ss_conf 781899999999997699999
No 128
>>2wjw_A Glutamate receptor 2; transport protein, postsynaptic cell membrane, GLUR2, synapse, membrane, palmitate, synaptic plasticity, alternative splicing; HET: NAG; 1.80A {Homo sapiens} PDB: 2wjx_A 3h5v_A* 3h5w_A (A:107-241,A:343-388)
Probab=22.02 E-value=45 Score=13.26 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHCC-HHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 78882799999999749998781111-01466577799999997623686408853458899999999976981
Q gi|255764508|r 126 HGLAESIVYNNKLLESGVERDDIKLE-TQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 126 ~~~~Ea~~m~~~l~~~Gv~~~~I~~e-~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
.+..-.+.+.+.+.+.|+.-...... .....+.++.....+-+++.+.+.+++.++.....+-+..+.+.|+.
T Consensus 26 ~g~~~l~~l~~~~~~~~i~V~~~~~~~~~~~~~~~~~~~~L~~i~~s~~rvIIl~~~~~~~~~iL~~a~~~gm~ 99 (181)
T 2wjw_A 26 RGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDEMYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKH 99 (181)
T ss_dssp SCSHHHHHHHHHHHHHTCEEEEEECCCCCSSTHHHHTHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 22224778999999708849999974357874177899999986605885899980568988889999984787
No 129
>>3iru_A Phoshonoacetaldehyde hydolase like protein; phosphonoacetaldehyde hydrolase like protein, structural genomics, PSI-2; 2.30A {Oleispira antarctica} (A:1-26,A:113-258)
Probab=21.96 E-value=29 Score=14.57 Aligned_cols=82 Identities=9% Similarity=-0.089 Sum_probs=41.0
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCH---HHHHCCHHHHHHHHHHHHHHHHHHHC---CCCCEEEECCHHHHHHHH
Q ss_conf 897068888778882799999999749998---78111101466577799999997623---686408853458899999
Q gi|255764508|r 116 IIISGGDPQKHGLAESIVYNNKLLESGVER---DDIKLETQSLDTFQNAQFSSSMIKNM---QGKNIILVSSAYHLKRSQ 189 (242)
Q Consensus 116 ii~SGg~~~~~~~~Ea~~m~~~l~~~Gv~~---~~I~~e~~s~nT~ena~~~~~il~~~---~~~~vilVTsa~Hm~RA~ 189 (242)
.++|++. .+.+...+...|+.. +.+...+.-..-.-+.....+.+++. ..+.+++|-+..+ -.
T Consensus 45 ~ivTn~~--------~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~KP~~~~~~~~l~~~~~~~~~~~~~vgD~~~---Di 113 (172)
T 3iru_A 45 GGNTGYG--------PGXXAPALIAAKEQGYTPASTVFATDVVRGRPFPDXALKVALELEVGHVNGCIKVDDTLP---GI 113 (172)
T ss_dssp EEECSSC--------HHHHHHHHHHHHHTTCCCSEEECGGGSSSCTTSSHHHHHHHHHHTCSCGGGEEEEESSHH---HH
T ss_pred EEEECCC--------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHH---HH
T ss_conf 9980785--------788999998721344333322122235656412677799999837875221678458475---49
Q ss_pred HHHHHCCCEEEEEECCCCC
Q ss_conf 9999769818998426644
Q gi|255764508|r 190 LYFQHFGINTKASCSDYLN 208 (242)
Q Consensus 190 ~~f~~~gi~~~p~~~d~~~ 208 (242)
..+++.|+.++.+...+..
T Consensus 114 ~aA~~aGi~~i~v~~~~~~ 132 (172)
T 3iru_A 114 EEGLRAGXWTVGVSCSGNE 132 (172)
T ss_dssp HHHHHTTCEEEEECSSSTT
T ss_pred HHHHHCCCEEEEEECCCCC
T ss_conf 9999679838998237877
No 130
>>2is6_A DNA helicase II; hydrolase/DNA complex; HET: DNA ADP; 2.20A {Escherichia coli} PDB: 2is2_A* 2is1_A* 2is4_A* (A:1-106,A:189-283)
Probab=21.93 E-value=46 Score=13.25 Aligned_cols=39 Identities=13% Similarity=-0.141 Sum_probs=17.4
Q ss_pred CEEEECCHH----HHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 408853458----8999999999769818998426644311137
Q gi|255764508|r 175 NIILVSSAY----HLKRSQLYFQHFGINTKASCSDYLNAYYSII 214 (242)
Q Consensus 175 ~vilVTsa~----Hm~RA~~~f~~~gi~~~p~~~d~~~~~~~~~ 214 (242)
+.++|=.+= ...+........+-.++-+ -|...+.+.|.
T Consensus 133 ~~i~iDE~QD~~~~~~~ll~~l~~~~~~~~~v-GD~~QsIy~f~ 175 (201)
T 2is6_A 133 TNILVDEFQDTNNIQYAWIRLLAGDTGKVMIV-GDDDQSIYGWR 175 (201)
T ss_dssp CEEEESSGGGCCHHHHHHHHHHHTTTCEEEEE-ECGGGCCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-ECCCCHHCCCC
T ss_conf 66666653000022354444203665168985-13630101124
No 131
>>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} (A:123-237)
Probab=21.75 E-value=46 Score=13.22 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=36.7
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCC-CCCCHHHHHHHHHHHCCCC
Q ss_conf 758999625213777765554346820589999999999825200575338970688887-7888279999999974999
Q gi|255764508|r 66 GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQK-HGLAESIVYNNKLLESGVE 144 (242)
Q Consensus 66 ~d~IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~-~~~~Ea~~m~~~l~~~Gv~ 144 (242)
..-|+|.|||.. -+.-|..|.+.|. ...++..+...-. .+..-++.+.+.+.+.||.
T Consensus 26 ~~~i~IiGgG~~------------------g~e~A~~l~~~g~----~v~lv~~~~~~~~~~~~~~~~~~~~~l~~~gI~ 83 (115)
T 1yqz_A 26 VDKVLVVGAGYV------------------SLEVLENLYERGL----HPTLIHRSDKINKLMDADMNQPILDELDKREIP 83 (115)
T ss_dssp CCEEEEECCSHH------------------HHHHHHHHHHHTC----EEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCC
T ss_pred CCEEEEEEEEEE------------------CCCCCCCEECCCC----CCCEEECCCCCCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 550578631100------------------0122211000323----210011000223320134555554211234069
No 132
>>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A (A:)
Probab=21.55 E-value=46 Score=13.20 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=4.9
Q ss_pred CCEEEEECCC
Q ss_conf 7589996252
Q gi|255764508|r 66 GNIIVLLGNG 75 (242)
Q Consensus 66 ~d~IVVLGgG 75 (242)
++-|++.|.|
T Consensus 64 a~rI~~~G~G 73 (212)
T 2i2w_A 64 GGKVLSCGNG 73 (212)
T ss_dssp TCCEEEEEST
T ss_pred CCEEEEEECC
T ss_conf 9989998488
No 133
>>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} (A:113-257)
Probab=21.41 E-value=47 Score=13.18 Aligned_cols=66 Identities=8% Similarity=0.097 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHH-HHHHHHC--CCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 999999997499987811110146657779999-9997623--686408853458899999999976981
Q gi|255764508|r 132 IVYNNKLLESGVERDDIKLETQSLDTFQNAQFS-SSMIKNM--QGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 132 ~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~-~~il~~~--~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
....+.+.+.|.+...+...... ++.+.+... ...+..+ .....++.+|..+...++...++.|-.
T Consensus 48 ~Gf~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~al~~~gp~ 116 (145)
T 2fvy_A 48 TYVIKELNDKGIKTEQLQLDTAM-WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS 116 (145)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECT-TCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHCCCCCCCCEEEECC-CHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 77999998629863232366221-1267888888876655314776310112047778999999980999
No 134
>>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium LT2} (A:1-127,A:265-275)
Probab=21.40 E-value=47 Score=13.18 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=19.5
Q ss_pred CCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 86408853458899999999976981899842664431
Q gi|255764508|r 173 GKNIILVSSAYHLKRSQLYFQHFGINTKASCSDYLNAY 210 (242)
Q Consensus 173 ~~~vilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~~~~~ 210 (242)
.+-++.+--+=-+.++...+.+.++.+.++|++.....
T Consensus 64 ~d~vv~~GGDGTil~a~~~l~~~~ipi~~Ip~Gt~n~l 101 (138)
T 2an1_A 64 ADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFL 101 (138)
T ss_dssp CSEEEECSCHHHHHHHHHHHTTSSCEEEEBCSSSCCSS
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCCEEEEECCCCCCEE
T ss_conf 76899977883598886764255745997014554325
No 135
>>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, manic, transferase; HET: 680; 1.83A {Bacillus anthracis str} (A:)
Probab=21.38 E-value=47 Score=13.17 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=13.4
Q ss_pred HHHCCCCHHHHHCCHHH---HHHHHHHHHHHHHHH
Q ss_conf 99749998781111014---665777999999976
Q gi|255764508|r 138 LLESGVERDDIKLETQS---LDTFQNAQFSSSMIK 169 (242)
Q Consensus 138 l~~~Gv~~~~I~~e~~s---~nT~ena~~~~~il~ 169 (242)
+.+.||++++|++|+-- .+..+|.....++.+
T Consensus 191 ~~~~Gi~~~~IiiDPg~g~~k~~~~~~~~~~~~~~ 225 (297)
T 1tx2_A 191 AKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQ 225 (297)
T ss_dssp HHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGG
T ss_pred HHHCCCCHHHEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99869989997426666766208887899853041
No 136
>>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis} (A:)
Probab=21.26 E-value=47 Score=13.16 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=7.7
Q ss_pred CHHHHHHHHHHHCCCC
Q ss_conf 8279999999974999
Q gi|255764508|r 129 AESIVYNNKLLESGVE 144 (242)
Q Consensus 129 ~Ea~~m~~~l~~~Gv~ 144 (242)
.||+.+.+.+.+.|++
T Consensus 57 ~~A~~~~~~lk~~g~~ 72 (79)
T 1x60_A 57 DNADTLAARAKNAGFD 72 (79)
T ss_dssp HHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999983997
No 137
>>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* (A:36-258,A:310-335)
Probab=21.06 E-value=48 Score=13.13 Aligned_cols=30 Identities=7% Similarity=-0.139 Sum_probs=16.3
Q ss_pred EEECCHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 885345889999999997698189984266
Q gi|255764508|r 177 ILVSSAYHLKRSQLYFQHFGINTKASCSDY 206 (242)
Q Consensus 177 ilVTsa~Hm~RA~~~f~~~gi~~~p~~~d~ 206 (242)
+++.-..+.++-..-+-..|-+.+-+.+.+
T Consensus 191 Via~GGI~tg~Di~kal~lGAd~V~vGt~~ 220 (249)
T 2c6q_A 191 IISDGGCSCPGDVAKAFGAGADFVMLGGML 220 (249)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred EEECCCCCCCCCEEEEEEECCCEEEECCCC
T ss_conf 885365453663589998335368963110
No 138
>>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-78)
Probab=20.83 E-value=48 Score=13.10 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.4
Q ss_pred CCCCCCCCCCEEEEECC
Q ss_conf 46454568758999625
Q gi|255764508|r 58 LSPQWKKDGNIIVLLGN 74 (242)
Q Consensus 58 ~~~~~~~~~d~IVVLGg 74 (242)
...+..+++|.+|++||
T Consensus 34 ~~~~~~~~~Dlvi~iGG 50 (78)
T 1yt5_A 34 ANAPGRVTADLIVVVGG 50 (78)
T ss_dssp SSSCSCBCCSEEEEEEC
T ss_pred CCCCCCCCCCEEEEECC
T ss_conf 47455678789999898
No 139
>>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} (A:)
Probab=20.77 E-value=48 Score=13.09 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHH------HH---HHHHHHHCCCCHHHHHCCHHH--HHHHHH
Q ss_conf 0589999999999825200575338970688887788827------99---999999749998781111014--665777
Q gi|255764508|r 92 QSYSRIFETMRLYKSCKQHSMHCTIIISGGDPQKHGLAES------IV---YNNKLLESGVERDDIKLETQS--LDTFQN 160 (242)
Q Consensus 92 ~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg~~~~~~~~Ea------~~---m~~~l~~~Gv~~~~I~~e~~s--~nT~en 160 (242)
...+++.+.+++.+.--++ .+.+.+|........|. +. +.+++.+.|| ++.+|+.. .++.++
T Consensus 81 ~~~~~~~~~i~~a~~lg~~----~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~Gv---~l~~E~~~~~~~~~~~ 153 (278)
T 1i60_A 81 EIITEFKGXXETCKTLGVK----YVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGV---KIALEFVGHPQCTVNT 153 (278)
T ss_dssp HHHHHHHHHHHHHHHHTCC----EEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTC---EEEEECCCCTTBSSCS
T ss_pred HHHHHHHHHHHHHHHHCCC----EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC---EEEEEECCCCCCCCCC
T ss_conf 9999999999999982939----89992698877778799999999999999999997499---8999835777555689
Q ss_pred HHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHH
Q ss_conf 999999976236864088534588999999999
Q gi|255764508|r 161 AQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193 (242)
Q Consensus 161 a~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~ 193 (242)
.....++++.-+.+.+-+.=+..|+.+.-.-..
T Consensus 154 ~~~~~~li~~~~~~~~g~~~D~~h~~~~g~~~~ 186 (278)
T 1i60_A 154 FEQAYEIVNTVNRDNVGLVLDSFHFHAXGSNIE 186 (278)
T ss_dssp HHHHHHHHHHHCCTTEEEEEEHHHHHHTTCCHH
T ss_pred HHHHHHHHHHCCCCCEEEEECHHHHHHCCCCHH
T ss_conf 999999998511663789854178886499999
No 140
>>3jpw_A Glutamate [NMDA] receptor subunit epsilon-2; amino terminal domain, zinc, phenylethanolamine, calcium, cell junction, cell membrane; HET: NAG; 2.80A {Rattus norvegicus} PDB: 3jpy_A* (A:118-254,A:329-363)
Probab=20.63 E-value=49 Score=13.07 Aligned_cols=68 Identities=10% Similarity=-0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCE
Q ss_conf 79999999974999878111101466577799999997623686408853458899999999976981
Q gi|255764508|r 131 SIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQHFGIN 198 (242)
Q Consensus 131 a~~m~~~l~~~Gv~~~~I~~e~~s~nT~ena~~~~~il~~~~~~~vilVTsa~Hm~RA~~~f~~~gi~ 198 (242)
...+.+.+.+.|+.-..........+..++.....+.+++...+-+++..+.-...+-+..+.+.|+.
T Consensus 35 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~l~~i~~s~arViIl~~~~~~~~~il~~A~~~gl~ 102 (172)
T 3jpw_A 35 VNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLT 102 (172)
T ss_dssp HHHHHHHHHTCSSCCEEEEEEECCCCC----CCSHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC
T ss_conf 99999999975974899999716888542589999999737998999966689988889999982877
No 141
>>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31), structural genomics, joint center for structural genomics, JCSG; 2.53A {Thermotoga maritima MSB8} (A:1-34,A:262-429)
Probab=20.47 E-value=49 Score=13.05 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=42.2
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCC-CCCCCCCCHHH------HHHHHHHHC
Q ss_conf 99962521377776555434682058999999999982520057533897068-88877888279------999999974
Q gi|255764508|r 69 IVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISGG-DPQKHGLAESI------VYNNKLLES 141 (242)
Q Consensus 69 IVVLGgG~~~~~~~~~~~~~~~~~~~~Rl~~a~~L~~~~~~~~~~~~ii~SGg-~~~~~~~~Ea~------~m~~~l~~~ 141 (242)
.+++.||.+.....+...+-++ -.-++.+..+-.. ..+. .++|+| +|. +|++++. ..-..+.+.
T Consensus 90 ~~li~GGEtTV~v~G~G~GGRN------QElaL~~a~~l~~-~~~v-~~LSagTDG~-DGpTdAAGAivd~~t~~~a~~~ 160 (202)
T 2b8n_A 90 AALIFGGETVVHVKGNGIGGRN------QELALSAAIALEG-IEGV-ILCSAGTDGT-DGPTDAAGGIVDGSTAKTLKAX 160 (202)
T ss_dssp EEEEEEECCBCCCCSCCCCCHH------HHHHHHHHHHTTT-CTTE-EEEEEETTSC-CSSSSCCEEEEETTHHHHHHHT
T ss_pred EEEEECCEEEEEECCCCCCCCC------HHHHHHHHHHHCC-CCCE-EEEEECCCCC-CCCCCCCEEEECHHHHHHHHHC
T ss_conf 5799777678870588888853------8999999997258-9997-9999665788-7898877689763279999986
Q ss_pred CCCHHHHHCCHHHHHHHHHH
Q ss_conf 99987811110146657779
Q gi|255764508|r 142 GVERDDIKLETQSLDTFQNA 161 (242)
Q Consensus 142 Gv~~~~I~~e~~s~nT~ena 161 (242)
|++.+.-+-++.|.+=+++.
T Consensus 161 gld~~~~L~~nDSy~ff~~~ 180 (202)
T 2b8n_A 161 GEDPYQYLKNNDSYNALKKS 180 (202)
T ss_dssp TCCHHHHHHTTCHHHHHHHT
T ss_pred CCCHHHHHHHCCCHHHHHHC
T ss_conf 99999999877869999976
No 142
>>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} (A:1-76)
Probab=20.02 E-value=26 Score=14.82 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=15.8
Q ss_pred HHHHHHHHCCCCHHHH-HCCHHH
Q ss_conf 9999999749998781-111014
Q gi|255764508|r 133 VYNNKLLESGVERDDI-KLETQS 154 (242)
Q Consensus 133 ~m~~~l~~~Gv~~~~I-~~e~~s 154 (242)
..++.|.++|+|+++| ++|-++
T Consensus 15 ~fk~lLlkLGlpe~rie~LE~kG 37 (76)
T 2vug_A 15 VYKEILVKLGLTEDRIETLEMKG 37 (76)
T ss_dssp --CHHHHHHTTCCTHHHHHTTSS
T ss_pred HHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 99999999596988999776345
Done!