RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764508|ref|YP_003065363.2| hypothetical protein
CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
           structural genomics, structure 2 function project, S2F,
           unknown function; 1.80A {Escherichia coli K12}
          Length = 266

 Score = 69.2 bits (169), Expect = 7e-13
 Identities = 22/156 (14%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 55  RPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRL----YKSCKQH 110
           +   S +     + ++L GN   ++P      I+ + +        + +      S    
Sbjct: 26  QDDFSGEVPYQADCVILAGNA--VMP-----TIDAACKIARDQQIPLLISGGIGHSTTFL 78

Query: 111 SMHCTIIISGGDPQKHGLAESIVYNNKLLES-GVERDDIKLETQSLDTFQNAQFSSSMIK 169
                        +  G AE+ +  +   +   +  + I +E QS +  +NA+FS +++ 
Sbjct: 79  YSAIAQHPHYNTIRTTGRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLN 138

Query: 170 NM--QGKNIILVSSAYHLKRSQLYFQHFGINTKASC 203
               +    I+V      +R+   F+    +   + 
Sbjct: 139 QAVERVHTAIVVQDPTMQRRTMATFRRMTGDNPDAP 174


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 36.1 bits (83), Expect = 0.008
 Identities = 37/288 (12%), Positives = 75/288 (26%), Gaps = 114/288 (39%)

Query: 7   FLIVSYWHLLCQSIRKIFFMSCFM----------------LLFSFIGW----------GI 40
            L+ +    +   +++ F                      L+  F+G+          G 
Sbjct: 20  LLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ 79

Query: 41  IPTILLKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFET 100
              +L   L   ++   L        +I  L         T          +   + +  
Sbjct: 80  FDQVLNLCLTE-FENCYLE-----GNDIHALAAKLLQENDTTLVKT-----KELIKNY-- 126

Query: 101 MRLYKSCKQHSMHCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKL---------- 150
                +          I++     K         N+ L  + V   + +L          
Sbjct: 127 ---ITAR---------IMAKRPFDKK-------SNSALFRA-VGEGNAQLVAIFGGQGNT 166

Query: 151 -----ETQSL-DTFQNAQFSSSMIKNMQGKNIILVSSAYHLKR-SQL------YFQHFGI 197
                E + L  T+        ++ +      ++  SA  L    +        F   G+
Sbjct: 167 DDYFEELRDLYQTYH------VLVGD------LIKFSAETLSELIRTTLDAEKVFTQ-GL 213

Query: 198 NTKA------SCSDYLNAYYSIIPLSANFYLTELALKEYIGIL-IAYY 238
           N         +  D    Y   IP+S         L   IG++ +A+Y
Sbjct: 214 NILEWLENPSNTPD--KDYLLSIPIS-------CPL---IGVIQLAHY 249



 Score = 31.5 bits (71), Expect = 0.19
 Identities = 33/218 (15%), Positives = 57/218 (26%), Gaps = 106/218 (48%)

Query: 31  LLFSFIGWGIIPTILLKHLQFSYQRPLLSPQWKKD--GNIIVLLGNGTTIIPTIPAIRI- 87
           +LF FIG              +Y    L P   +D   N       G    P+ P + I 
Sbjct: 302 VLF-FIGV---------RCYEAYPNTSLPPSILEDSLEN-----NEGV---PS-PMLSIS 342

Query: 88  ---EPSFQSYSRIFETMRLYKSCKQH---SMHCTIIIS----------GGDPQK-HGL-- 128
              +   Q Y  +            H        + IS           G PQ  +GL  
Sbjct: 343 NLTQEQVQDY--V-------NKTNSHLPAGKQ--VEISLVNGAKNLVVSGPPQSLYGLNL 391

Query: 129 ------AES---------------IV---------YNNKLLESGVER-------DDIKLE 151
                 A S                          +++ LL    +        +++   
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451

Query: 152 TQSL-----DTFQNAQFSSSMIKNMQ--GKNII--LVS 180
            + +     DTF +         +++    +I   +V 
Sbjct: 452 AKDIQIPVYDTF-DG-------SDLRVLSGSISERIVD 481



 Score = 28.8 bits (64), Expect = 1.2
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 19/82 (23%)

Query: 177 ILVSSAYHLKRSQL---YFQHFGINTKASCSDYLNAYYSIIPLSANF------YLTELAL 227
           +LV +A     SQL   + +     T+   +D  +   +   L   F       +    +
Sbjct: 20  LLVPTASFFIASQLQEQFNKILPEPTEGFAAD--DEPTTPAELVGKFLGYVSSLVEPSKV 77

Query: 228 KEYIGIL--------IAYYRGN 241
            ++  +L          Y  GN
Sbjct: 78  GQFDQVLNLCLTEFENCYLEGN 99


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.0 bits (61), Expect = 1.9
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 21/47 (44%)

Query: 46 LKHLQFSYQRPLLSPQWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQ 92
          LK LQ S +  L    +  D               + PA+ I+ + +
Sbjct: 22 LKKLQASLK--L----YADD---------------SAPALAIKATME 47


>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
           protein; asymmetric dimer, tetramer, P-glycoprotein;
           HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
          Length = 243

 Score = 25.6 bits (56), Expect = 9.8
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 118 ISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNII 177
           ISGG  Q+  +A + + N K+L        +   T SLD+   +    ++   M+G+  +
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILM-------LDEATASLDSESESMVQKALDSLMKGRTTL 192

Query: 178 LVS 180
           +++
Sbjct: 193 VIA 195


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.140    0.427 

Gapped
Lambda     K      H
   0.267   0.0716    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,114,784
Number of extensions: 93530
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 276
Number of HSP's successfully gapped: 19
Length of query: 242
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 152
Effective length of database: 3,511,270
Effective search space: 533713040
Effective search space used: 533713040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)