BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764508|ref|YP_003065363.2| hypothetical protein
CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 242

 Score =  498 bits (1281), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 1   MLLSWIFLIVSYWHLLCQSIRKIFFMSCFMLLFSFIGWGIIPTILLKHLQFSYQRPLLSP 60
           MLLSWIFLIVSYWHLLCQSIRKIFFMSCFMLLFSFIGWGIIPTILLKHLQFSYQRPLLSP
Sbjct: 1   MLLSWIFLIVSYWHLLCQSIRKIFFMSCFMLLFSFIGWGIIPTILLKHLQFSYQRPLLSP 60

Query: 61  QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISG 120
           QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISG
Sbjct: 61  QWKKDGNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQHSMHCTIIISG 120

Query: 121 GDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVS 180
           GDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVS
Sbjct: 121 GDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKNIILVS 180

Query: 181 SAYHLKRSQLYFQHFGINTKASCSDYLNAYYSIIPLSANFYLTELALKEYIGILIAYYRG 240
           SAYHLKRSQLYFQHFGINTKASCSDYLNAYYSIIPLSANFYLTELALKEYIGILIAYYRG
Sbjct: 181 SAYHLKRSQLYFQHFGINTKASCSDYLNAYYSIIPLSANFYLTELALKEYIGILIAYYRG 240

Query: 241 NR 242
           NR
Sbjct: 241 NR 242


>gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score = 26.9 bits (58), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175
           I ISG     H +++ I+     +   +    I +  ++L+T  NAQ +S+  +     +
Sbjct: 65  IFISGV---HHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHH 121

Query: 176 IILVSSAYHLKRSQLYFQ 193
           +++V+  YH+ R+ L  Q
Sbjct: 122 VLIVTHDYHMPRTFLELQ 139


>gi|254780607|ref|YP_003065020.1| hypothetical protein CLIBASIA_02470 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 131

 Score = 25.8 bits (55), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 113 HCTIIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLET 152
            C    SG +    G A+S++Y N L    +ER++ KLE+
Sbjct: 80  ECAFAASGAE---EGTAQSMIYANCLQGHAIERNE-KLES 115


>gi|254780363|ref|YP_003064776.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 264

 Score = 25.4 bits (54), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 66  GNIIVLLGNGTTIIPTIPAIRIEPSFQSYSRIFETMRLYKSCKQ 109
           GN + L   GT I P +  IR   +++ +  +  T    ++C+Q
Sbjct: 115 GNRLYLFSTGTGIAPFVSVIRDPGTYEKFDEVIVT----QTCRQ 154


>gi|254780789|ref|YP_003065202.1| hypothetical protein CLIBASIA_03400 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 192

 Score = 23.5 bits (49), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 110 HSMHCTIIISGGDPQK 125
           H + C I++S GD QK
Sbjct: 115 HVVACEIVLSSGDKQK 130


>gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 469

 Score = 23.1 bits (48), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 137 KLLESGVERDDIKLETQS--LDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193
           ++ + G+ R +I +ET S  +D    + F   ++  + G+N +LV  A++   ++ YF+
Sbjct: 288 RMFDMGMYRPEIVMETTSPAMDIQIPSNFER-LLFEISGRNSLLVKEAFYSLENKKYFR 345


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.326    0.140    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,446
Number of Sequences: 1233
Number of extensions: 6788
Number of successful extensions: 32
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 13
length of query: 242
length of database: 328,796
effective HSP length: 71
effective length of query: 171
effective length of database: 241,253
effective search space: 41254263
effective search space used: 41254263
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 37 (18.9 bits)