HHsearch alignment for GI: 255764509 and conserved domain: cd00365
>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) is a tightly regulated enzyme, which catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals, this is the rate limiting committed step in cholesterol biosynthesis. Bacteria, such as Pseudomonas mevalonii, which rely solely on mevalonate for their carbon source, catalyze the reverse reaction, using an NAD-dependent HMGR to deacetylate mevalonate into 3-hydroxy-3-methylglutaryl-CoA. There are two classes of HMGR: class I enzymes which are found predominantly in eukaryotes and contain N-terminal membrane regions and class II enzymes which are found primarily in prokaryotes and are soluble as they lack the membrane region. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR
Probab=100.00 E-value=0 Score=736.96 Aligned_cols=315 Identities=21% Similarity=0.218 Sum_probs=282.2
Q ss_pred CCCCCEEEEEEEEEEECCEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCHH
Q ss_conf 97641037861127603756765136774788653034538999989999999559988999967922412599858977
Q gi|255764509|r 1 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAE 80 (351)
Q Consensus 1 m~en~IG~~~lPlGia~~l~InG~~a~~~y~VPMATeE~SvVAAas~gak~~~~~sGG~~t~~~~~~m~r~~~f~~~~~~ 80 (351)
T Consensus 43 ~IEN~IG~~~lPlGvAg~l~InG~----~y~VPMATeE~SvVAa~srgaK~-~~~~GG~~~~v~~~~m~~q~~f~~~~-- 115 (376)
T cd00365 43 MIENVIGTFELPYAVASNFQIDGR----DVLVPLVTEEPSIVAAASYMAKL-ARAGGGFTTSSSAPLMHAQVQIVLIQ-- 115 (376)
T ss_pred CCCCCCEEEECCEEEECCEEECCE----EEEEEEEECHHHHHHHHHHHHHH-HHHCCCEEEEECCCCEEEEEEEEECC--
T ss_conf 543011154322326547799884----77874674378899999889999-98279879998688579836999678--
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHC-----CCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999997617-5099999997301-----578047888878738869999999732006721588999999999998679
Q gi|255764509|r 81 MALTALQEIT-LKKAEIARVIEQT-----SQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWS 154 (351)
Q Consensus 81 ~a~~~~~~i~-~~~~~i~~~a~~~-----sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~ 154 (351)
T Consensus 116 d~~~~~~~~~~~~~~~i~~~a~~~~~~~~~rgGgl~~i~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~E~v~~~i~~~~~ 195 (376)
T cd00365 116 DPLNAKLSLLRSGKDEIIELANRKDQLLNSLGGGCRDIEVHTFGPMLVAHLIVDVGDAMGANMINTMAEAVAPLMEAYTG 195 (376)
T ss_pred CHHHHHHHHHHHCHHHHHHHHHHHCHHHHHCCCEEEEEEEEEECCEEEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88999999987368999999973394667269617897867608789999997422332344889999999999998779
Q ss_pred CCEE--EEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHH-HHHHHHCCCHHHCCCCCH
Q ss_conf 8148--9734774312333554310377207999987569999757389999999887866-565542200220216216
Q gi|255764509|r 155 YLHY--GSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQK-NLIGTFLAGGIRSANAHF 231 (351)
Q Consensus 155 ~~~~--~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~-~~~a~~~~~~a~t~Nkgi 231 (351)
T Consensus 196 ~~~~~~~~~~~~-------------~~~g~~v~A~~~i~~~~l~~~~~~-~~~~~~~~~~~~~~~a~~d~~rA~thNkgi 261 (376)
T cd00365 196 GMQVRLRSLSNL-------------TGDGRLARAQARITPQQLETAEFS-GEAVIEGILDAYAFKAAVDSYRAATHNKGI 261 (376)
T ss_pred CCHHHHEECCCC-------------CCCCEEEEEEEEEEHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 861523010434-------------568808999999819998441465-388999999999999753123024455531
Q ss_pred HHHHHHHHHHCCCCHHHHHHHCCCE--------EEEEEE-CCEEEEEEEECCEEEEEECCCCCC-HHHHHHHHHHCCCCC
Q ss_conf 6778888876276378888640320--------256872-890899998056467730664468-889999986086877
Q gi|255764509|r 232 ANMLLAYYLATGQDAANIVEGSQGL--------TYAKLH-DDSLYFSCTIPNLILGCVGNGKNI-PAIKNNLTALGCIEE 301 (351)
Q Consensus 232 mNgI~Av~lATGnD~a~v~a~~~a~--------t~~~~~-~~~L~g~i~lPsl~vGtVGG~t~l-p~~~~~l~ilg~~~~ 301 (351)
T Consensus 262 mNgI~Av~iATGqD~raVea~~hayA~~~y~~lt~~~~~~~~~L~~sl~lP-l~VGtVGGgt~~~p~~~~~L~iLg~--- 337 (376)
T cd00365 262 MNGVDPLIVACGQDWRAVEVGAHAYACRHYGSLTTWEKDNNGHLVITLEMS-MPVGLVGGATKTHPLAQASLRILGV--- 337 (376)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHCC---
T ss_conf 566788985607968899888647765046620389994796199999910-4247974788758889999997389---
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 88776988999999999988899999988078868999987260
Q gi|255764509|r 302 RKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLER 345 (351)
Q Consensus 302 ~~~~~~A~~La~iiAavgLAqnlaal~Al~t~G~iq~gHmkl~R 345 (351)
T Consensus 338 ----~~A~~LaeIiAavgLA~nlsal~Al~t~g-iq~gHMkL~a 376 (376)
T cd00365 338 ----KTAQALARIAVAVGLAQNLGAMRALATEG-IQRGHMALHA 376 (376)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHCC
T ss_conf ----78999999999999999999999988375-6788776329