Query gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 351
No_of_seqs 116 out of 668
Neff 5.8
Searched_HMMs 33803
Date Wed Jun 1 20:31:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764509.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2r4f_A 3-hydroxy-3-methylglut 100.0 0 0 579.6 22.2 240 1-349 7-251 (251)
2 >1r31_A 3-hydroxy-3-methylglut 100.0 0 0 494.5 18.3 215 7-349 1-226 (264)
3 >2r4f_A 3-hydroxy-3-methylglut 100.0 1.3E-29 3.7E-34 204.6 12.6 103 68-170 1-105 (105)
4 >1r31_A 3-hydroxy-3-methylglut 99.9 1.5E-25 4.5E-30 179.0 12.5 99 66-166 1-109 (109)
5 >2zzt_A Putative uncharacteriz 69.3 7 0.00021 18.1 9.6 75 91-165 10-84 (107)
6 >3h90_A Ferrous-iron efflux pu 50.8 15 0.00044 16.1 10.4 68 91-158 4-71 (81)
7 >1dkg_D Molecular chaperone DN 50.4 9.1 0.00027 17.4 1.9 19 277-295 71-89 (97)
8 >2kho_A Heat shock protein 70; 48.0 11 0.00031 17.0 1.9 20 276-295 69-88 (96)
9 >2dgd_A 223AA long hypothetica 44.7 11 0.00033 16.8 1.7 72 159-245 4-75 (95)
10 >3ixl_A Amdase, arylmalonate d 41.5 9.7 0.00029 17.3 0.9 72 159-245 4-75 (95)
11 >3b47_A GSU0582, methyl-accept 20.3 36 0.0011 13.6 0.8 18 20-38 43-60 (91)
No 1
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:86-153,A:259-441)
Probab=100.00 E-value=0 Score=579.56 Aligned_cols=240 Identities=36% Similarity=0.547 Sum_probs=223.8
Q ss_pred CCCCCEEEEEEEEEEECCEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCHH
Q ss_conf 97641037861127603756765136774788653034538999989999999559988999967922412599858977
Q gi|255764509|r 1 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAE 80 (351)
Q Consensus 1 m~en~IG~~~lPlGia~~l~InG~~a~~~y~VPMATeE~SvVAAas~gak~~~~~sGG~~t~~~~~~m~r~~~f~~~~~~ 80 (351)
||||+||+++||+|||+||+|||+ +|+|||||||||||||+|||||+ ++.+|||++.++++.
T Consensus 7 ~iEN~IG~~~vPlGva~~l~InG~----~~~vPmAteE~svVAs~srgak~-i~~~GG~~~~v~~~g------------- 68 (251)
T 2r4f_A 7 CCENVIGYMPIPVGVAGPLCLDEK----EFQVPMATTEGCLVASTNRGCRA-IGLGGGASSRVLADG------------- 68 (251)
T ss_dssp TBSSEEEEEEEEEEEEEEEEETTE----EEEEEEECCCTTHHHHHHHHHHH-HHHTTCBEEEEEEEE-------------
T ss_pred CCCCEEEEEECCEEEECCEEECCE----EEEEEEEEEHHHHHHHHHHHHHH-HHCCCCEEEEECCCC-------------
T ss_conf 765100045212079647899687----99887675077899999889999-871798499985785-------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 89999976175099999997301578047888878738869999999732006721588999999999998679814897
Q gi|255764509|r 81 MALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGS 160 (351)
Q Consensus 81 ~a~~~~~~i~~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~~~~ 160 (351)
T Consensus 69 -------------------------------------------------------------------------------- 68 (251)
T 2r4f_A 69 -------------------------------------------------------------------------------- 68 (251)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred ECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHH
Q ss_conf 34774312333554310377207999987569999757389999999887866565542200220216216677888887
Q gi|255764509|r 161 VSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYL 240 (351)
Q Consensus 161 ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~~~~a~t~NkgimNgI~Av~l 240 (351)
+++.|++.+||++|+||+.||.+++++++++++|++++++..++.++++|+||+.|||||+||||+|+||
T Consensus 69 ----------~s~~n~~~gRg~~Viae~~i~~~~~~~~l~~~~e~l~~~~~~~~~~a~~~~~ra~t~Nkgi~NgI~Av~l 138 (251)
T 2r4f_A 69 ----------PAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYI 138 (251)
T ss_dssp ----------CCHHHHHHCCEEEEEEEEEECHHHHHHTSSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHH
T ss_pred ----------HHHEEEECCCEEEEEHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf ----------1322444153037521104619999988701699999999998898876442246644410012144443
Q ss_pred HCCCCHHHHHHHCCCEE---EEEEECCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCC--CCCHHHHHHHH
Q ss_conf 62763788886403202---56872890899998056467730664468889999986086877887--76988999999
Q gi|255764509|r 241 ATGQDAANIVEGSQGLT---YAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKT--GDNARRLAAIC 315 (351)
Q Consensus 241 ATGnD~a~v~a~~~a~t---~~~~~~~~L~g~i~lPsl~vGtVGG~t~lp~~~~~l~ilg~~~~~~~--~~~A~~La~ii 315 (351)
|||||||+|+|++|+|+ ||+.++++|++++|||||+||||||+|++|+||+||+||||+++++. .+||++||+||
T Consensus 139 ATGqD~raV~~~~~a~a~~~~~~~~~~~L~~sitlPsl~VGtVGGgt~lp~~~~~L~ilg~~g~~~~~~~~~A~~LA~Ii 218 (251)
T 2r4f_A 139 ACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIV 218 (251)
T ss_dssp HTTCCGGGHHHHTCEEEEEEEESTTSCEEEEEEEEEEECCCSBSGGGGSHHHHHHHHHTTCCSCCSSSTTHHHHHHHHHH
T ss_pred HHCCCHHHHHHHCCEEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 63386788875225148878876589909999994682079746867765699999983988768889870899999999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999888999999880788689999872603367
Q gi|255764509|r 316 AATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349 (351)
Q Consensus 316 AavgLAqnlaal~Al~t~G~iq~gHmkl~R~~~~ 349 (351)
||+|||||||+|+||+++| ||+|||||+|++++
T Consensus 219 aa~gLA~nlsal~Al~t~g-i~~gHm~L~r~~l~ 251 (251)
T 2r4f_A 219 CGTVMAGELSLMAALAAGH-LVKSHMIHNRSKIN 251 (251)
T ss_dssp HHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHHCCCCC
T ss_conf 9999999999999987070-89999998445799
No 2
>>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} (A:56-109,A:219-428)
Probab=100.00 E-value=0 Score=494.55 Aligned_cols=215 Identities=19% Similarity=0.172 Sum_probs=194.9
Q ss_pred EEEEEEEEEECCEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCHHHHHHHH
Q ss_conf 37861127603756765136774788653034538999989999999559988999967922412599858977899999
Q gi|255764509|r 7 SSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAEMALTAL 86 (351)
Q Consensus 7 G~~~lPlGia~~l~InG~~a~~~y~VPMATeE~SvVAAas~gak~~~~~sGG~~t~~~~~~m~r~~~f~~~~~~~a~~~~ 86 (351)
|+++||+||++||+|||+ +|+|||||||||||||+|||||+ ++.+|||++.+.
T Consensus 1 G~~~iPlGia~~l~InG~----~y~vPmATeE~svVAs~srgak~-i~~~GG~~~~v~---------------------- 53 (264)
T 1r31_A 1 GTFELPYAVASNFQINGR----DVLVPLVVEEPSIVAAASYMAKL-ARANGGFTTSSS---------------------- 53 (264)
T ss_dssp EEEEEEEEEECSCEETTE----ECCEEEECSCTTHHHHHHHHHHH-HHTTTCBEEEEC----------------------
T ss_pred CEEECCEEEECCEEECCE----EEEEEEEECHHHHHHHHHHHHHH-HHHCCCEEEEEC----------------------
T ss_conf 124244211056589885----78875564423599999899999-995698899986----------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 76175099999997301578047888878738869999999732006721588999999999998679814897347743
Q gi|255764509|r 87 QEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNIC 166 (351)
Q Consensus 87 ~~i~~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~~~~ilsN~~ 166 (351)
T Consensus 54 -------------------------------------------------------------------------------- 53 (264)
T 1r31_A 54 -------------------------------------------------------------------------------- 53 (264)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCH
Q ss_conf 12333554310377207999987569999757389999999887866565542200220216216677888887627637
Q gi|255764509|r 167 SDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATGQDA 246 (351)
Q Consensus 167 tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~~~~a~t~NkgimNgI~Av~lATGnD~ 246 (351)
.||+.|+||+.||.+++++.++++++.+ +.+..++.++.+|+||++||||||||||+|+||||||||
T Consensus 54 ------------~rg~~v~A~~~i~~~~l~~~l~~~~~~~-~~~~~a~~~a~~d~~ra~t~Nkgi~Ngi~Av~lATGqD~ 120 (264)
T 1r31_A 54 ------------ADLRLARAQVRITPQQLETAEFSGEAVI-EGILDAYAFAAVDPYRAATHNKGIMNGIDPLIVATGNDW 120 (264)
T ss_dssp ------------CTTSEEEEEEEECHHHHCCSSSCHHHHH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred ------------CCCCEEEEEEEECCEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCH
T ss_conf ------------7887048999955200112255579999-999999999866476444676413789999999835609
Q ss_pred HHHHHHCCCE----------EEEEEE-CCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 8888640320----------256872-89089999805646773066446888999998608687788776988999999
Q gi|255764509|r 247 ANIVEGSQGL----------TYAKLH-DDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNARRLAAIC 315 (351)
Q Consensus 247 a~v~a~~~a~----------t~~~~~-~~~L~g~i~lPsl~vGtVGG~t~lp~~~~~l~ilg~~~~~~~~~~A~~La~ii 315 (351)
|+|++|+|+| ++|+++ +++|++++|||++.+|||||+|.+|+||+||+|||| ++|++||+||
T Consensus 121 raV~a~~ha~a~~~g~y~~Lt~~~~~~~~~L~gsitlP~~v~~vgG~gt~lp~~~~~L~ilg~-------~~a~~LA~Ii 193 (264)
T 1r31_A 121 RAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTHPLAQLSLRILGV-------KTAQALAEIA 193 (264)
T ss_dssp HHHHHHHHHHHTTTSSCCCSEEEEECTTSCEEEEEEEECCCCSBSTHHHHCHHHHHHHHHHTC-------SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC-------CCHHHHHHHH
T ss_conf 999987407665125556652179817984899997785278870787667728999987388-------4699999999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 9999888999999880788689999872603367
Q gi|255764509|r 316 AATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349 (351)
Q Consensus 316 AavgLAqnlaal~Al~t~G~iq~gHmkl~R~~~~ 349 (351)
||+|||||||+|+||+++| ||+|||||+|+++-
T Consensus 194 AavgLA~nlsal~Al~t~g-iq~gHm~L~r~~~a 226 (264)
T 1r31_A 194 VAVGLAQNLGAMRALATEG-IQRGHMALHARNIA 226 (264)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CC------------
T ss_pred HHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_conf 9999999999999987075-67999999887588
No 3
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258)
Probab=99.96 E-value=1.3e-29 Score=204.63 Aligned_cols=103 Identities=31% Similarity=0.453 Sum_probs=101.2
Q ss_pred EEEEEEEEECCHHHHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 24125998589778999997617--5099999997301578047888878738869999999732006721588999999
Q gi|255764509|r 68 MTRSIFFETENAEMALTALQEIT--LKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAV 145 (351)
Q Consensus 68 m~r~~~f~~~~~~~a~~~~~~i~--~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v 145 (351)
|+|+|+|.|++..++.+|..|+. +++++|+++++++||||+|++|++.+.|+.|+|+|.|+||||||+|||++++|++
T Consensus 1 MtRaP~~~f~s~~~A~~f~~wi~~~e~~~~ik~~~~stSr~~rL~~i~~~i~G~~v~lRF~~~TGDAmGmNMvtkat~~~ 80 (105)
T 2r4f_A 1 MTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKA 80 (105)
T ss_dssp EEECCEEECSSHHHHHHHHHHHHSHHHHHHHHHHHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHH
T ss_pred EEEEEEEEECCHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 48865999487688999999874635689998754254442244047876307669999997227778767999999999
Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf 9999986798148973477431233
Q gi|255764509|r 146 MDWILSQWSYLHYGSVSGNICSDKK 170 (351)
Q Consensus 146 ~~~i~~~~~~~~~~~ilsN~~tdkk 170 (351)
|+||++++|+..+++|++|||+|||
T Consensus 81 ~~~i~~~~p~~~~~~lsGN~ctDKK 105 (105)
T 2r4f_A 81 LSKLHEYFPEMQILAVSGNYCTDKK 105 (105)
T ss_dssp HHHHHHHCTTCEEEESCCSCSCCSS
T ss_pred HHHHHHHCCCCCEEEECCCCHHHHH
T ss_conf 9999986887605632255256543
No 4
>>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} (A:110-218)
Probab=99.93 E-value=1.5e-25 Score=179.00 Aligned_cols=99 Identities=19% Similarity=0.134 Sum_probs=90.2
Q ss_pred CCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCEEEEEEEEEEE-----CCEEEEEEEEEECCCCCC
Q ss_conf 9224125998589778999997617509999999730-----157804788887873-----886999999973200672
Q gi|255764509|r 66 ERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQ-----TSQFTRFLQLHSQIA-----GNLLFLRLEFATGDASGH 135 (351)
Q Consensus 66 ~~m~r~~~f~~~~~~~a~~~~~~i~~~~~~i~~~a~~-----~sr~ggl~~i~~~~~-----g~~v~l~~~~dt~DAMGa 135 (351)
+.|.+|++|. +..|...+..|+.+++++|+++||+ .+||||++|++++.. ++|+++++.+||||||||
T Consensus 1 p~miGQI~l~--~~~d~~~~~~~i~~~k~~ll~~An~~~psmvkrGGG~~di~~r~~~~~~~~~~l~v~l~vD~~DAMGA 78 (109)
T 1r31_A 1 PLMHAQVQIV--GIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGA 78 (109)
T ss_dssp CEEEEEEEEE--SCSCHHHHHHHHHHTHHHHHHHHHTTCHHHHHTTCEEEEEEEEEECCCTTCCEEEEEEEEECTTBCCH
T ss_pred CCEEEEEEEC--CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEEECCHHHHH
T ss_conf 8256401204--76468999999997468999977523679998278764379998212356743799999742224545
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 1588999999999998679814897347743
Q gi|255764509|r 136 NMVTKAADAVMDWILSQWSYLHYGSVSGNIC 166 (351)
Q Consensus 136 Nmvnt~~E~v~~~i~~~~~~~~~~~ilsN~~ 166 (351)
|+||||+|+++++|+++++++++++|||||+
T Consensus 79 N~iNtmlEava~~le~~~g~~vlm~ILSN~A 109 (109)
T 1r31_A 79 NTVNTMAEAVAPLMEAITGGQVRLRILSNLA 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 7899999999999988624101066304667
No 5
>>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} (A:)
Probab=69.28 E-value=7 Score=18.14 Aligned_cols=75 Identities=8% Similarity=0.052 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 509999999730157804788887873886999999973200672158899999999999867981489734774
Q gi|255764509|r 91 LKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNI 165 (351)
Q Consensus 91 ~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~~~~ilsN~ 165 (351)
+..+.|.++..+...--++.++..+..|+.+++.+.+...+.|=..=....++.+...|.+.|+......|--..
T Consensus 10 ~~~~~I~~~i~~~~~V~~vh~lr~r~~G~~~~v~~hi~v~~~~tv~eah~i~~~ie~~i~~~~~~i~~v~I~~ep 84 (107)
T 2zzt_A 10 DXYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEXDIEVDGKXSVKDAHELTVKIRKEXLKRRDDIEDVTIHVEP 84 (107)
T ss_dssp HHHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEECCCEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999999999973999675457034788895999999998999989999999999999999878997569999687
No 6
>>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A (A:203-283)
Probab=50.80 E-value=15 Score=16.10 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 50999999973015780478888787388699999997320067215889999999999986798148
Q gi|255764509|r 91 LKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHY 158 (351)
Q Consensus 91 ~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~~ 158 (351)
+..+++.+...+...--++.++..+..|+.+++.+.+...+.|--.=....++.+...|.+.++....
T Consensus 4 e~~~~i~~~i~~~~gV~~vh~l~~r~~G~~~~v~~hi~v~~~~sv~eah~i~~~ie~~l~~~~~i~~v 71 (81)
T 3h90_A 4 EERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDV 71 (81)
T ss_dssp HHHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 77999999997598623134799999589799999999899998999999999999999987799869
No 7
>>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} (D:183-227,D:312-363)
Probab=50.44 E-value=9.1 Score=17.42 Aligned_cols=19 Identities=16% Similarity=0.415 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 7730664468889999986
Q gi|255764509|r 277 LGCVGNGKNIPAIKNNLTA 295 (351)
Q Consensus 277 vGtVGG~t~lp~~~~~l~i 295 (351)
|=.|||+|+.|..|..|+-
T Consensus 71 ViLVGGsSRIP~Vq~~L~~ 89 (97)
T 1dkg_D 71 VILVGGQTRMPMVQKKVAE 89 (97)
T ss_dssp EEEESGGGGSHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH
T ss_conf 9998925417899999999
No 8
>>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} (A:183-227,A:313-363)
Probab=48.00 E-value=11 Score=17.04 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 67730664468889999986
Q gi|255764509|r 276 ILGCVGNGKNIPAIKNNLTA 295 (351)
Q Consensus 276 ~vGtVGG~t~lp~~~~~l~i 295 (351)
.|=.|||+|+.|..|..++-
T Consensus 69 ~ViLVGGSSRIP~Vq~~l~~ 88 (96)
T 2kho_A 69 DVILVGGQTRMPMVQKKVAE 88 (96)
T ss_dssp EEEEESGGGGSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89998874656799999999
No 9
>>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} (A:108-202)
Probab=44.68 E-value=11 Score=16.85 Aligned_cols=72 Identities=11% Similarity=-0.032 Sum_probs=44.3
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHH
Q ss_conf 97347743123335543103772079999875699997573899999998878665655422002202162166778888
Q gi|255764509|r 159 GSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAY 238 (351)
Q Consensus 159 ~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~~~~a~t~NkgimNgI~Av 238 (351)
+++++=|..+-......+....|..|..........-..+.+.+++++.+...... . .+ .+.||+
T Consensus 4 ial~TPY~~~v~~~~~~~~~~~G~eV~~~~~lg~~~~~~ia~i~~~~i~~~~~~~~---~-------d~-----p~adAi 68 (95)
T 2dgd_A 4 LWIGTPYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHL---N-------EV-----LKADAV 68 (95)
T ss_dssp EEEEESSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTH---H-------HH-----TTSSEE
T ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH---H-------CC-----CCCCEE
T ss_conf 28855777065799999999679058530024756542102399999999999854---0-------13-----468789
Q ss_pred HHHCCCC
Q ss_conf 8762763
Q gi|255764509|r 239 YLATGQD 245 (351)
Q Consensus 239 ~lATGnD 245 (351)
||.|.|=
T Consensus 69 ~isCTnl 75 (95)
T 2dgd_A 69 YIACTAL 75 (95)
T ss_dssp EECCTTS
T ss_pred EEECCCC
T ss_conf 9941586
No 10
>>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:117-211)
Probab=41.48 E-value=9.7 Score=17.27 Aligned_cols=72 Identities=8% Similarity=-0.028 Sum_probs=43.4
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHH
Q ss_conf 97347743123335543103772079999875699997573899999998878665655422002202162166778888
Q gi|255764509|r 159 GSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAY 238 (351)
Q Consensus 159 ~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~~~~a~t~NkgimNgI~Av 238 (351)
+++++=|..+-......+....|..|.....+....-.++-+.+++++.+...... . .+ .+.||+
T Consensus 4 iai~TPY~~~v~~~~~~~~~~~G~eV~~~~~l~~~~~~~ia~i~~~~i~~~~~~~~---~-------d~-----p~adai 68 (95)
T 3ixl_A 4 VALATAYIDDVNERLAAFLAEESLVPTGXRSLGITGVEAMARVDTATLVDLCVRAF---E-------AA-----PDSDGI 68 (95)
T ss_dssp EEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHH---H-------TS-----TTCSEE
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEECCEEECCCCCCHHHCCCCHHHHHHHHHHHH---H-------CC-----CCCCEE
T ss_conf 89970886898799999999879733031102788526540379999999999997---4-------18-----998789
Q ss_pred HHHCCCC
Q ss_conf 8762763
Q gi|255764509|r 239 YLATGQD 245 (351)
Q Consensus 239 ~lATGnD 245 (351)
|+.|.|=
T Consensus 69 ~isCTnl 75 (95)
T 3ixl_A 69 LLSSGGL 75 (95)
T ss_dssp EEECTTS
T ss_pred EEECCCC
T ss_conf 9847885
No 11
>>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens} (A:44-134)
Probab=20.26 E-value=36 Score=13.65 Aligned_cols=18 Identities=33% Similarity=0.403 Sum_probs=8.3
Q ss_pred EECCCCCCCCEEEEEEEHH
Q ss_conf 6765136774788653034
Q gi|255764509|r 20 KITGNVIQDKVKVPLATYE 38 (351)
Q Consensus 20 ~InG~~a~~~y~VPMATeE 38 (351)
.+||+|. -.+.|||+-||
T Consensus 43 ~~dG~ht-L~~avPl~NEe 60 (91)
T 3b47_A 43 KVDGRHV-LSFIVPLANEV 60 (91)
T ss_dssp C---CCE-EEEEEEEECCT
T ss_pred ECCCCEE-EEEEEEECCCC
T ss_conf 2499579-99998741663
Done!