Query gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 351
No_of_seqs 116 out of 668
Neff 5.8
Searched_HMMs 23785
Date Wed Jun 1 01:08:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764509.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r4f_A 3-hydroxy-3-methylgluta 100.0 0 0 820.3 36.4 343 1-349 92-441 (441)
2 1r31_A 3-hydroxy-3-methylgluta 100.0 0 0 711.0 27.9 317 1-347 50-389 (428)
3 2zzt_A Putative uncharacterize 80.0 2.6 0.00011 19.9 9.6 67 91-157 10-76 (107)
4 2xed_A Putative maleate isomer 72.2 1 4.4E-05 22.4 1.2 88 139-245 131-218 (273)
5 2dgd_A 223AA long hypothetical 62.4 4.5 0.00019 18.4 2.8 88 141-245 95-182 (223)
6 3byp_A CZRB protein; membrane 56.8 8.4 0.00035 16.7 10.4 66 92-157 11-78 (94)
7 3h90_A Ferrous-iron efflux pum 47.2 12 0.0005 15.7 10.4 64 94-157 209-272 (283)
8 3ixl_A Amdase, arylmalonate de 42.6 8.7 0.00036 16.6 1.6 94 134-245 98-191 (240)
9 1jce_A ROD shape-determining p 35.2 14 0.00059 15.3 1.7 53 279-334 283-336 (344)
10 2kho_A Heat shock protein 70; 33.0 18 0.00074 14.7 1.9 32 123-154 216-249 (605)
11 1yuw_A Heat shock cognate 71 k 28.6 23 0.00097 13.9 1.9 21 277-297 334-355 (554)
12 2v7y_A Chaperone protein DNAK; 22.5 30 0.0013 13.2 1.9 23 276-298 305-328 (509)
No 1
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=100.00 E-value=0 Score=820.28 Aligned_cols=343 Identities=35% Similarity=0.519 Sum_probs=330.4
Q ss_pred CCCCCEEEEEEEEEEECCEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCHH
Q ss_conf 97641037861127603756765136774788653034538999989999999559988999967922412599858977
Q gi|255764509|r 1 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAE 80 (351)
Q Consensus 1 m~en~IG~~~lPlGia~~l~InG~~a~~~y~VPMATeE~SvVAAas~gak~~~~~sGG~~t~~~~~~m~r~~~f~~~~~~ 80 (351)
++||+||+++||+||||||+|||+ +|+|||||||||||||+|||||++ +.+|||++++.++.|+|+|+|.|.+..
T Consensus 92 ~~EN~IG~~~lPlGVAgpl~InGk----~y~VPMATeEgSvVASasrGaK~i-~~~GG~~t~v~~d~m~r~pv~~~~~~~ 166 (441)
T 2r4f_A 92 CCENVIGYMPIPVGVAGPLCLDEK----EFQVPMATTEGCLVASTNRGCRAI-GLGGGASSRVLADGMTRGPVVRLPRAC 166 (441)
T ss_dssp TBSSEEEEEEEEEEEEEEEEETTE----EEEEEEECCCTTHHHHHHHHHHHH-HHTTCBEEEEEEEEEEECCEEECSSHH
T ss_pred CCCCEEEEEECCEEEECCEEECCC----EEEEEEEECHHHHHHHHHHHHHHH-HCCCCEEEEECCCCEEEEEEEEECCHH
T ss_conf 755010146213157636798795----899877753778999998899998-707986999857864885599958768
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 8999997617--50999999973015780478888787388699999997320067215889999999999986798148
Q gi|255764509|r 81 MALTALQEIT--LKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHY 158 (351)
Q Consensus 81 ~a~~~~~~i~--~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~~ 158 (351)
++.+|..|+. ++++.+++.+++++||||++++++...+++++|+|.|||||||||||||+++|+++++|+++|++.++
T Consensus 167 ~a~~~~~~~~~~e~~~~i~~~~~stsr~g~l~~i~~~~~g~~l~lrf~~dTgDAMGaNmVn~~~E~~~~~l~~~~~~~~~ 246 (441)
T 2r4f_A 167 DSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQI 246 (441)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 89999997638577999987610555400032588764077799999974343111047889999999999986787735
Q ss_pred EEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHH
Q ss_conf 97347743123335543103772079999875699997573899999998878665655422002202162166778888
Q gi|255764509|r 159 GSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAY 238 (351)
Q Consensus 159 ~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~~~~a~t~NkgimNgI~Av 238 (351)
++|+||||+|||+++.|++.+||++|+||+.||.++++++++++++++++.+..++.++++++||++|||||+||||+||
T Consensus 247 l~I~sN~~tdkk~sa~n~i~grGk~vvae~~i~~~vv~~vlk~~~~~l~~~~~~k~~igsa~~~~~~~~N~~iaNgI~AV 326 (441)
T 2r4f_A 247 LAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAI 326 (441)
T ss_dssp EESCCSCSCCSSCCHHHHHHCCEEEEEEEEEECHHHHHHTSSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHH
T ss_pred EEECCCCHHHHHHHHEEEECCCCCEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 87525306655402214651555255321002599999997017899999999888988761202355432133337999
Q ss_pred HHHCCCCHHHHHHHCCCEEEEEEE---CCEEEEEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCCC--CCCCHHHHHH
Q ss_conf 876276378888640320256872---89089999805646773066446888999998608687788--7769889999
Q gi|255764509|r 239 YLATGQDAANIVEGSQGLTYAKLH---DDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERK--TGDNARRLAA 313 (351)
Q Consensus 239 ~lATGnD~a~v~a~~~a~t~~~~~---~~~L~g~i~lPsl~vGtVGG~t~lp~~~~~l~ilg~~~~~~--~~~~A~~La~ 313 (351)
|||||||||++++++|+||.|+.. +++|++++|||||+||||||+|+||+||+||+||||.|.++ +.+||++||+
T Consensus 327 ~lATGqD~a~v~~ss~~~t~~e~~~~~~~dL~~sitlPsL~VGTVGGgT~l~pq~~~L~iLgv~g~~~~~p~~nA~~LA~ 406 (441)
T 2r4f_A 327 YIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLAR 406 (441)
T ss_dssp HHHTTCCGGGHHHHTCEEEEEEEESTTSCEEEEEEEEEEECCCSBSGGGGSHHHHHHHHHTTCCSCCSSSTTHHHHHHHH
T ss_pred HHHHCCCHHHHHHHCCEEEEEEEEECCCCCEEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
T ss_conf 99952768887530563688888865899099999956864798577567666999999739887688898727999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 999999888999999880788689999872603367
Q gi|255764509|r 314 ICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349 (351)
Q Consensus 314 iiAavgLAqnlaal~Al~t~G~iq~gHmkl~R~~~~ 349 (351)
||||+|||||||+|+||++.| ||+|||||+|++++
T Consensus 407 IiAa~gLA~nlsal~ALat~g-iqkgHM~l~R~~~~ 441 (441)
T 2r4f_A 407 IVCGTVMAGELSLMAALAAGH-LVKSHMIHNRSKIN 441 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHCCCCC
T ss_conf 999999999999999987170-89999998545799
No 2
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A*
Probab=100.00 E-value=0 Score=711.03 Aligned_cols=317 Identities=20% Similarity=0.197 Sum_probs=288.7
Q ss_pred CCCCCEEEEEEEEEEECCEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCHH
Q ss_conf 97641037861127603756765136774788653034538999989999999559988999967922412599858977
Q gi|255764509|r 1 MHMKKVSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTRSIFFETENAE 80 (351)
Q Consensus 1 m~en~IG~~~lPlGia~~l~InG~~a~~~y~VPMATeE~SvVAAas~gak~~~~~sGG~~t~~~~~~m~r~~~f~~~~~~ 80 (351)
||||+||+++||+||||||+|||+ +|+|||||||||||||+|||||+ ++++|||++.+.++.|+|||+|.+. .
T Consensus 50 ~IEN~IG~~~lPlGvAgpl~InG~----~y~VPMATeEgslVAS~srGaK~-i~~~GG~~t~v~~~~m~~qi~~~~~--~ 122 (428)
T 1r31_A 50 MIENVIGTFELPYAVASNFQINGR----DVLVPLVVEEPSIVAAASYMAKL-ARANGGFTTSSSAPLMHAQVQIVGI--Q 122 (428)
T ss_dssp HSSSEEEEEEEEEEEECSCEETTE----ECCEEEECSCTTHHHHHHHHHHH-HHTTTCBEEEECCCEEEEEEEEESC--S
T ss_pred CCCCCCCEEECCEEEECCEEECCE----EEEEEEEECHHHHHHHHHHHHHH-HHHCCCEEEEECCCCEEECCCCCCC--C
T ss_conf 742021136434343056589884----88875565423599999899999-9957998999867724540101576--4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------CCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999997617509999999730----------157804788887873886999999973200672158899999999999
Q gi|255764509|r 81 MALTALQEITLKKAEIARVIEQ----------TSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWIL 150 (351)
Q Consensus 81 ~a~~~~~~i~~~~~~i~~~a~~----------~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~ 150 (351)
+...+..|+.+++++++++++. ++|++++++++....|++++|+|.|||||||||||||+++|++|+||+
T Consensus 123 d~~~~~~~~~~~~~~i~~~a~~~~~~~~~~gggsr~~~l~~i~~~~~g~~v~l~f~~~TgDAMGaNMVn~~~e~v~~~i~ 202 (428)
T 1r31_A 123 DPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPRGPMLVAHLIVDVRDAMGANTVNTMAEAVAPLME 202 (428)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHTTCHHHHHTTCEEEEEEEEEECCCTTCCEEEEEEEEECTTBCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_conf 59999999997547999866432567775388622689998402467756999999851255655799999999999999
Q ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCC
Q ss_conf 86798148973477431233355431037720799998756999975738999999988786656554220022021621
Q gi|255764509|r 151 SQWSYLHYGSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAH 230 (351)
Q Consensus 151 ~~~~~~~~~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~~~~a~t~Nkg 230 (351)
+++++..+++|+|||++||+ |.|++.+|.+.+.. ...+++++++++...+.++..+++|++|||||
T Consensus 203 ~~~~~~~~~~i~sN~~~~k~-------------v~A~~~i~~~~~~~-~~~~~~~~~~~i~~~~~~a~~~~~~a~t~N~~ 268 (428)
T 1r31_A 203 AITGGQVRLRILSNLADLRL-------------ARAQVRITPQQLET-AEFSGEAVIEGILDAYAFAAVDPYRAATHNKG 268 (428)
T ss_dssp HHHCSEEEEEEECSCCTTSE-------------EEEEEEECHHHHCC-SSSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHCCCCEEEEEECCCCCCCE-------------EEEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 86697536886136678862-------------48999976300112-24558999999999988887767766077651
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCE----------EEEEEE-CCEEEEEEEECCEEEEEECCCCCC-HHHHHHHHHHCC
Q ss_conf 66778888876276378888640320----------256872-890899998056467730664468-889999986086
Q gi|255764509|r 231 FANMLLAYYLATGQDAANIVEGSQGL----------TYAKLH-DDSLYFSCTIPNLILGCVGNGKNI-PAIKNNLTALGC 298 (351)
Q Consensus 231 imNgI~Av~lATGnD~a~v~a~~~a~----------t~~~~~-~~~L~g~i~lPsl~vGtVGG~t~l-p~~~~~l~ilg~ 298 (351)
+||||+|+|||||||||+|+||+|+| ++|+.+ +++|++++++| |+||||||+|++ |+||+||+||||
T Consensus 269 ~aNgi~Ai~lAtGqD~aav~e~s~a~a~~~g~y~~l~~~~~~~~~~l~~~~~~P-l~vgtVGGgt~~~p~~~~~L~ilg~ 347 (428)
T 1r31_A 269 IMNGIDPLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMP-MPVGLVGGATKTHPLAQLSLRILGV 347 (428)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHTTTSSCCCSEEEEECTTSCEEEEEEEE-CCCCSBSTHHHHCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCHHEEECCCCCCCCEEEECCCCEEEEEEECC-CCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 388999999994461999861213410203556664038982797299999568-6168870788736658999986088
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-CCCC
Q ss_conf 877887769889999999999888999999880788689999872-6033
Q gi|255764509|r 299 IEERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRL-ERMH 347 (351)
Q Consensus 299 ~~~~~~~~~A~~La~iiAavgLAqnlaal~Al~t~G~iq~gHmkl-~R~~ 347 (351)
+||++||+||||+|||||||+|+||++.| ||+||||| +||.
T Consensus 348 -------~~A~~La~Iiaa~~LA~els~l~Al~~~~-i~~~Hm~Lh~r~~ 389 (428)
T 1r31_A 348 -------KTAQALAEIAVAVGLAQNLGAMRALATEG-IQRGHMALHARNI 389 (428)
T ss_dssp -------SSHHHHHHHHHHHHHHHHHHHHHHHHTTC-CC-----------
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_conf -------57999999999999999999999986275-6899999988758
No 3
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=80.01 E-value=2.6 Score=19.86 Aligned_cols=67 Identities=9% Similarity=0.103 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 5099999997301578047888878738869999999732006721588999999999998679814
Q gi|255764509|r 91 LKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLH 157 (351)
Q Consensus 91 ~~~~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~ 157 (351)
+-.++|.+++++...--++.++.++..|+.+++++.+..-..|=..-+-.+++.+-..|.+.+|...
T Consensus 10 e~~~~I~~i~~~~pgV~~Vh~lr~r~~G~~~~vd~hI~Vd~~~sv~eaH~I~~~Ie~~I~~~~p~v~ 76 (107)
T 2zzt_A 10 DMYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIE 76 (107)
T ss_dssp HHHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999729990231258899989969999999989999699999999999999998789973
No 4
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=72.25 E-value=1 Score=22.37 Aligned_cols=88 Identities=7% Similarity=-0.053 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 89999999999986798148973477431233355431037720799998756999975738999999988786656554
Q gi|255764509|r 139 TKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGT 218 (351)
Q Consensus 139 nt~~E~v~~~i~~~~~~~~~~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~ 218 (351)
.+...++...++.. +..-+.+++=|..+-......+....|..|++...+....-..+-+.+++++.+.....
T Consensus 131 ~t~~~Ai~~AL~~l--gakrIallTPY~~~v~~~~~~~~~~~G~eV~~~~~l~~~~~~~ia~i~~~~i~~a~~~~----- 203 (273)
T 2xed_A 131 RSSAGALVEGLRAL--DAQRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSL----- 203 (273)
T ss_dssp EEHHHHHHHHHHHT--TCCEEEEEECSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHS-----
T ss_pred CCHHHHHHHHHHHC--CCCCEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCEEECCCHHHHHHHHHHH-----
T ss_conf 27899999999964--99857997479789999999999967823655553046777424315999999999985-----
Q ss_pred HCCCHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 220022021621667788888762763
Q gi|255764509|r 219 FLAGGIRSANAHFANMLLAYYLATGQD 245 (351)
Q Consensus 219 ~~~~~a~t~NkgimNgI~Av~lATGnD 245 (351)
+ + ...||+||-||..
T Consensus 204 -~------~-----~~~DAI~IsCttn 218 (273)
T 2xed_A 204 -D------L-----SEVDALVISCAVQ 218 (273)
T ss_dssp -C------C-----TTCSEEEEESSSS
T ss_pred -C------C-----CCCCEEEEECCCC
T ss_conf -2------5-----5898699984788
No 5
>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=62.44 E-value=4.5 Score=18.41 Aligned_cols=88 Identities=10% Similarity=0.013 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999998679814897347743123335543103772079999875699997573899999998878665655422
Q gi|255764509|r 141 AADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFL 220 (351)
Q Consensus 141 ~~E~v~~~i~~~~~~~~~~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~~~~a~~~ 220 (351)
...++..-++. ++ ..-+++++=|..+-.....++....|..|.+...++.+.-..+-..+++++.+...... ..
T Consensus 95 ~~~A~~~AL~~-lg-~krIav~TPY~~~v~~~~~~~~~~~G~eVv~~~~l~~~~~~~i~~~~~~~i~~~~~~~~--~~-- 168 (223)
T 2dgd_A 95 PEESVYELLKK-LN-VRKLWIGTPYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHL--NE-- 168 (223)
T ss_dssp HHHHHHHHHHH-TT-CCEEEEEESSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTH--HH--
T ss_pred HHHHHHHHHHH-CC-CCEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH--CC--
T ss_conf 79999999997-29-98079967886577899999999679137520204877654202399999999999974--11--
Q ss_pred CCHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 0022021621667788888762763
Q gi|255764509|r 221 AGGIRSANAHFANMLLAYYLATGQD 245 (351)
Q Consensus 221 ~~~a~t~NkgimNgI~Av~lATGnD 245 (351)
....||+|+.|.|=
T Consensus 169 -----------~~~adav~iscT~l 182 (223)
T 2dgd_A 169 -----------VLKADAVYIACTAL 182 (223)
T ss_dssp -----------HTTSSEEEECCTTS
T ss_pred -----------CCCCCEEEEECCCC
T ss_conf -----------45787899941586
No 6
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=56.78 E-value=8.4 Score=16.70 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHCC--CCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 0999999973015--78047888878738869999999732006721588999999999998679814
Q gi|255764509|r 92 KKAEIARVIEQTS--QFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLH 157 (351)
Q Consensus 92 ~~~~i~~~a~~~s--r~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~ 157 (351)
..+.|.+++++.. ..-++.++.++..|+++++++.+.....|=--=...+++.+-..|.+.++...
T Consensus 11 ~~~~I~~~i~~~~~~~v~~vh~lr~r~~G~~~~vd~~i~v~~~~sv~eaH~i~~~ve~~l~~~~~~~~ 78 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGLQ 78 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTEE
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEEEECCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999999995689986788888889989989999999989999899999999999999996589977
No 7
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=47.16 E-value=12 Score=15.75 Aligned_cols=64 Identities=17% Similarity=0.203 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 9999997301578047888878738869999999732006721588999999999998679814
Q gi|255764509|r 94 AEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLH 157 (351)
Q Consensus 94 ~~i~~~a~~~sr~ggl~~i~~~~~g~~v~l~~~~dt~DAMGaNmvnt~~E~v~~~i~~~~~~~~ 157 (351)
+++++..++....-++.++..+..|+..++++.+...+.|=-.-...+.|.+-..++++++...
T Consensus 209 ~~i~~~i~~~~~v~~v~~l~~~~~G~~~~v~v~i~v~~~~~~~~~~~i~~~ie~~l~~~~~~~~ 272 (283)
T 3h90_A 209 QEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSD 272 (283)
T ss_dssp HHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTTCE
T ss_pred HHHHHHHHCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 9999999768997305889999988969999999989899899999999999999997679986
No 8
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=42.56 E-value=8.7 Score=16.60 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 72158899999999999867981489734774312333554310377207999987569999757389999999887866
Q gi|255764509|r 134 GHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQK 213 (351)
Q Consensus 134 GaNmvnt~~E~v~~~i~~~~~~~~~~~ilsN~~tdkk~s~~n~~~~rG~~V~Ae~~i~~~~~~~~l~~~~e~~~~~~~~~ 213 (351)
|.-.++. ..++.+.++.. +..-+.+++=|..+-......+....|..|.....+..+-.......+++++.+.....
T Consensus 98 g~pv~t~-~~A~~~Al~~l--g~krIav~tPY~~~~~~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (240)
T 3ixl_A 98 GLPCTTM-STAVLNGLRAL--GVRRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRA 174 (240)
T ss_dssp SSCEEEH-HHHHHHHHHHT--TCSEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHH
T ss_pred CCCEECH-HHHHHHHHHHC--CCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEECHHHHHHHHHHH
T ss_conf 9961067-99999999980--99864543676489999999999973986232235567766533234787799999998
Q ss_pred HHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 56554220022021621667788888762763
Q gi|255764509|r 214 NLIGTFLAGGIRSANAHFANMLLAYYLATGQD 245 (351)
Q Consensus 214 ~~~a~~~~~~a~t~NkgimNgI~Av~lATGnD 245 (351)
.. .+ ..+||+|+.|.|=
T Consensus 175 ~~----------~~-----pd~daI~iscT~~ 191 (240)
T 3ixl_A 175 FE----------AA-----PDSDGILLSSGGL 191 (240)
T ss_dssp HH----------TS-----TTCSEEEEECTTS
T ss_pred HH----------CC-----CCCCEEEEECCCC
T ss_conf 73----------38-----8876899857886
No 9
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=35.20 E-value=14 Score=15.31 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=33.3
Q ss_pred EECCCCCCHHHHHHH-HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 306644688899999-86086877887769889999999999888999999880788
Q gi|255764509|r 279 CVGNGKNIPAIKNNL-TALGCIEERKTGDNARRLAAICAATVLCGELSLLAAQTNPG 334 (351)
Q Consensus 279 tVGG~t~lp~~~~~l-~ilg~~~~~~~~~~A~~La~iiAavgLAqnlaal~Al~t~G 334 (351)
.|||++++|..++.+ +.+|+.- ....|..+ +--..|.=+|.|+..++-+-..|
T Consensus 283 LvGGsSriP~v~~~i~~~fg~~v--~~~~np~~-aVA~GAAl~~~~~~~~~~~~~~~ 336 (344)
T 1jce_A 283 LTGGGSLLRGLDTLLQKETGISV--IRSEEPLT-AVAKGAGMVLDKVNILKKLQGAG 336 (344)
T ss_dssp EESGGGCSBTHHHHHHHHHSSCE--EECSSTTT-HHHHHHHHGGGCHHHHTTSCEEC
T ss_pred EECCCCCHHHHHHHHHHHHCCCC--CCCCCHHH-HHHHHHHHHHHCHHHHHHHCCCC
T ss_conf 98943333689999999978697--86888787-99999999973867897600589
No 10
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=33.03 E-value=18 Score=14.68 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=20.7
Q ss_pred EEEEEEECCC--CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999973200--6721588999999999998679
Q gi|255764509|r 123 LRLEFATGDA--SGHNMVTKAADAVMDWILSQWS 154 (351)
Q Consensus 123 l~~~~dt~DA--MGaNmvnt~~E~v~~~i~~~~~ 154 (351)
+.+.-..+|. =|.++-+.+.+.+++.+.+.++
T Consensus 216 ~~V~~~~gd~~LGG~d~D~~l~~~~~~~f~~~~~ 249 (605)
T 2kho_A 216 FEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249 (605)
T ss_dssp EEEEEEEEESSCSGGGTHHHHHHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999935778758689999999999999999849
No 11
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=28.56 E-value=23 Score=13.95 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHH-HHC
Q ss_conf 773066446888999998-608
Q gi|255764509|r 277 LGCVGNGKNIPAIKNNLT-ALG 297 (351)
Q Consensus 277 vGtVGG~t~lp~~~~~l~-ilg 297 (351)
|=.|||++++|..|..++ +++
T Consensus 334 V~LvGGssriP~V~~~l~~~f~ 355 (554)
T 1yuw_A 334 IVLVGGSTRIPKIQKLLQDFFN 355 (554)
T ss_dssp EEEESGGGGCHHHHHHHHHHTT
T ss_pred EEEECCCCCHHHHHHHHHHHHC
T ss_conf 9998983743779999999819
No 12
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=22.52 E-value=30 Score=13.19 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Q ss_conf 6773066446888999998-6086
Q gi|255764509|r 276 ILGCVGNGKNIPAIKNNLT-ALGC 298 (351)
Q Consensus 276 ~vGtVGG~t~lp~~~~~l~-ilg~ 298 (351)
.|=.|||++++|..|..|+ .+|.
T Consensus 305 ~V~LvGGssriP~v~~~l~~~fg~ 328 (509)
T 2v7y_A 305 KVILVGGSTRIPAVQEAIKRELGK 328 (509)
T ss_dssp EEEEESGGGGCHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989704768999999998588
Done!