RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62] (351 letters) >gnl|CDD|129624 TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP). This model represents archaeal examples of the enzyme hydroxymethylglutaryl-CoA reductase (NADP) (EC 1.1.1.34) and the catalytic domain of eukaryotic examples, which also contain a hydrophobic N-terminal domain. This enzyme synthesizes mevalonate, a precursor of isopentenyl pyrophosphate (IPP), a building block for the synthesis of cholesterol, isoprenoids, and other molecules. A related hydroxymethylglutaryl-CoA reductase, typified by an example from Pseudomonas mevalonii, is NAD-dependent and catabolic. Length = 402 Score = 230 bits (588), Expect = 4e-61 Identities = 128/343 (37%), Positives = 186/343 (54%), Gaps = 10/343 (2%) Query: 6 VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65 + + +P+ GP+KI G + + +PLAT E L SV RG G + Sbjct: 67 IGYMQIPLGVAGPLKIDGEYAKGEYYIPLATTEGALVASVNRGCSAITAG-GGATVRVTK 125 Query: 66 ERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQ-IAGNLLFLR 124 + MTR+ T + A I + I E T++ + ++ +AG+LL+ R Sbjct: 126 DGMTRAPVVRTPSVVRAGACRIWIDENQNAIKEAAESTTRHGKLQKIQPICLAGDLLYPR 185 Query: 125 LEFATGDASGHNMVTKAADAVMDWILSQ--WSYLHYGSVSGNICSDKKATAINGIMGRGK 182 TGDA G NMVT A + + ++ + W + +VSGN C+DKK AIN I GRGK Sbjct: 186 FVTTTGDAMGMNMVTIATEYALKQMVEEYGWEGMEVVAVSGNYCTDKKPAAINLIEGRGK 245 Query: 183 NFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLAT 242 + VAE TI + K L+T+ ++ +N KNLIG+ +AG + NAH+AN++ A +LAT Sbjct: 246 SIVAEATIPGDVVNKVLKTTVSALVEVNIAKNLIGSAMAGSM-GFNAHYANIIGAIFLAT 304 Query: 243 GQDAANIVEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEER 302 GQD A+IVEGS G+T A+ D LYFS ++P++ +G VG G + L LG Sbjct: 305 GQDEAHIVEGSLGITLAEEVDGDLYFSVSLPDVPVGTVGGGTVLETQGECLDLLGV---- 360 Query: 303 KTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLER 345 + G+NAR+ A I VL GELSL A G L++AH+ L R Sbjct: 361 RGGNNARQFAEIVGCAVLAGELSLCGALA-AGHLVQAHMELGR 402 >gnl|CDD|162108 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase. Length = 886 Score = 219 bits (560), Expect = 6e-58 Identities = 132/347 (38%), Positives = 191/347 (55%), Gaps = 15/347 (4%) Query: 11 MPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLIDERMTR 70 +P+ GP+ + G Q VP+AT E L S RG ML G+R+ ++ + MTR Sbjct: 533 IPVGVAGPLLLDGKEYQ----VPMATTEGCLVASTNRGCRALMLG-GGVRSRVLADGMTR 587 Query: 71 SIFFETENAEMALTALQ--EITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFA 128 +A A A E+ A I + TS+F R ++H +AG L++R + Sbjct: 588 GPVVRLPSACRAAEAKAWLEVPENFAVIKDAFDSTSRFARLKKIHIAMAGRNLYIRFQAK 647 Query: 129 TGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKNFVAEI 188 TGDA G NM++K + + + + + S+SGN C+DKK AIN I GRGK+ V E Sbjct: 648 TGDAMGMNMISKGTEQALAELQEHFPDMQILSLSGNYCTDKKPAAINWIEGRGKSVVCEA 707 Query: 189 TINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATGQDAAN 248 TI I + L+TS E ++ +N KNLIG+ +AG I NAH AN++ A Y+ATGQDAA Sbjct: 708 TIPAKIVRSVLKTSAEALVDVNINKNLIGSAMAGSIGGFNAHAANIVTAIYIATGQDAAQ 767 Query: 249 IVEGSQGLT----YAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGC--IEER 302 V S +T + +D LY SCT+P++ +G VG G +P L LG Sbjct: 768 NVGSSNCMTLMEAWGPTGED-LYISCTMPSIEIGTVGGGTVLPPQSACLQMLGVRGANAT 826 Query: 303 KTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349 + G+NA++LA I ATV+ GELSL+AA G L+++H+R R +N Sbjct: 827 RPGENAKQLARIVCATVMAGELSLMAALAA-GHLVKSHMRHNRSSIN 872 >gnl|CDD|183299 PRK11753, PRK11753, DNA-binding transcriptional dual regulator Crp; Provisional. Length = 211 Score = 28.8 bits (65), Expect = 2.0 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Query: 63 LIDERMTRSIFF----ETENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAG 118 L +E RS + E AE++ +++ +I + ++Q R LQ S+ G Sbjct: 77 LFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMAL--SAQMARRLQNTSRKVG 134 Query: 119 NLLFL 123 +L FL Sbjct: 135 DLAFL 139 >gnl|CDD|179449 PRK02610, PRK02610, histidinol-phosphate aminotransferase; Provisional. Length = 374 Score = 28.9 bits (65), Expect = 2.2 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Query: 82 ALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQI-----AGNLLFLRL 125 A AL+ A I ++++ + + LQ Q+ A N L+LRL Sbjct: 273 AQLALEHRQELLAAIPEILQERDRLYQALQELPQLRVWPSAANFLYLRL 321 >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional. Length = 659 Score = 26.8 bits (59), Expect = 9.6 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%) Query: 127 FATGDASGHNMVTKAAD----AVMDWILSQWSYLHYGSVSGN 164 F GDA+G M+ A V+DWI + +V Sbjct: 466 FCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNINVENW 507 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.134 0.395 Gapped Lambda K H 0.267 0.0618 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,550,313 Number of extensions: 346246 Number of successful extensions: 625 Number of sequences better than 10.0: 1 Number of HSP's gapped: 618 Number of HSP's successfully gapped: 10 Length of query: 351 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 257 Effective length of database: 3,963,321 Effective search space: 1018573497 Effective search space used: 1018573497 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.4 bits)