RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme
A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)



>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase;
           oxidoreductase, cholesterol, biocynthesis, HMG-COA,
           NADPH, statin, alternative splicing; HET: RIE; 1.70A
           {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A*
           3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A*
           3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A*
           1hwj_A* 1hwk_A* ... (A:86-153,A:259-441)
          Length = 251

 Score =  186 bits (473), Expect = 5e-48
 Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 6/184 (3%)

Query: 171 ATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAH 230
             AIN I GRGK+ V E  I   + ++ L+T+ E +I +N  KNL+G+ +AG I   NAH
Sbjct: 69  PAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAH 128

Query: 231 FANMLLAYYLATGQDAANIVEGSQGLT---YAKLHDDSLYFSCTIPNLILGCVGNGKNIP 287
            AN++ A Y+A GQDAA  V  S  +T    +   ++ LY SCT+P++ +G VG G N+ 
Sbjct: 129 AANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLL 188

Query: 288 AIKNNLTALGCIEERKT--GDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLER 345
             +  L  LG     K   G+NAR+LA I   TV+ GELSL+AA    G L+++H+   R
Sbjct: 189 PQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAA-GHLVKSHMIHNR 247

Query: 346 MHLN 349
             +N
Sbjct: 248 SKIN 251


>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
           oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A
           {Pseudomonas mevalonii} (A:56-109,A:219-428)
          Length = 264

 Score =  156 bits (397), Expect = 3e-39
 Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 20/183 (10%)

Query: 177 IMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLL 236
                +   A++ I     +    +    +I                  + N    N + 
Sbjct: 52  SSADLRLARAQVRITPQQLETAEFSGEA-VIEGILDAYAFAAVDPYRAATHNKGIMNGID 110

Query: 237 AYYLATGQDAANIVEGSQ----------GLTYAKLHDD-SLYFSCTIPNLILGCVGNGKN 285
              +ATG D   +  G+            LT  +  ++  L  +  +P  +    G  K 
Sbjct: 111 PLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKT 170

Query: 286 IPAIKNNLTALGCIEERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLER 345
            P  + +L  LG          A+ LA I  A  L   L  + A    G +   H+ L  
Sbjct: 171 HPLAQLSLRILGV-------KTAQALAEIAVAVGLAQNLGAMRALATEG-IQRGHMALHA 222

Query: 346 MHL 348
            ++
Sbjct: 223 RNI 225



 Score = 32.8 bits (75), Expect = 0.064
 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 5/57 (8%)

Query: 9  ISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65
            +P       +I G      V VPL   E  +  +    A ++     G   +   
Sbjct: 3  FELPYAVASNFQING----RDVLVPLVVEEPSIVAAASYMAKLARAN-GGFTTSSSA 54


>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase;
           oxidoreductase, cholesterol, biocynthesis, HMG-COA,
           NADPH, statin, alternative splicing; HET: RIE; 1.70A
           {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A*
           3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A*
           3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A*
           1hwj_A* 1hwk_A* ... (A:154-258)
          Length = 105

 Score =  109 bits (273), Expect = 8e-25
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 68  MTRSIFFETENAEMALTALQEITLKK--AEIARVIEQTSQFTRFLQLHSQIAGNLLFLRL 125
           MTR        A  +      +   +  A I    + TS+F R  +LH+ IAG  L++R 
Sbjct: 1   MTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRF 60

Query: 126 EFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKK 170
           +  +GDA G NM++K  +  +  +   +  +   +VSGN C+DKK
Sbjct: 61  QSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKK 105


>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics,
           PSI-2, protein structure initiative, northeast
           structural genomics consortium; 1.89A {Listeria innocua}
           (A:137-283)
          Length = 147

 Score = 31.9 bits (72), Expect = 0.13
 Identities = 12/126 (9%), Positives = 25/126 (19%), Gaps = 3/126 (2%)

Query: 121 LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAI---NGI 177
           L   L     +        K  +     ++ +  ++  G       +           G+
Sbjct: 22  LSCWLYNELNETKYLEWAXKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGV 81

Query: 178 MGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLA 237
                  +  IT          +T+   +  L            G        F      
Sbjct: 82  YIGANLELYRITKEAIYLDTANKTAAISLKELTEDGIFKDEGNGGDEGLFKGIFYRYFTD 141

Query: 238 YYLATG 243
               T 
Sbjct: 142 LIEETA 147


>2i32_E Histone regulatory homolog A; histone deposition, chromatin
           regulation, histone chaperones, ASF1, HIRA, CAF-1,
           replication chaperone; 2.70A {Homo sapiens} (E:)
          Length = 57

 Score = 27.4 bits (60), Expect = 2.7
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 264 DSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNARRLAAICAATVLCG 322
           ++LYF  +    + G V NG+++  I+ NL       E +T D  RR+  +C A +  G
Sbjct: 2   ENLYFQGSSATSVAGVV-NGESLEDIRKNLLKKQV--ETRTADGRRRITPLCIAQLDTG 57


>2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866,
           unknown function, PSI-2, protein structure initiative;
           HET: MSE; 1.41A {Neisseria meningitidis MC58} (A:)
          Length = 172

 Score = 27.4 bits (60), Expect = 2.7
 Identities = 7/73 (9%), Positives = 15/73 (20%)

Query: 80  EMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVT 139
                 + E    +  +  + +    F     LH +      F  L      A       
Sbjct: 36  AXLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDEL 95

Query: 140 KAADAVMDWILSQ 152
                 +    + 
Sbjct: 96  LRQHIGLHDNWAA 108


>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP
           bound of lmnadk1, transferase; HET: DTA PG4; 1.85A
           {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A*
           2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A*
           (A:94-250)
          Length = 157

 Score = 27.5 bits (61), Expect = 2.8
 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 64  IDERMTRSIFFETENAEMALT--ALQEITLKKAEIARVIE 101
                      +    +   T  AL E T+K +    V++
Sbjct: 4   KVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVD 43


>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual
           specificity phosphatase, DUSP13, testis and skeletal
           muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
           (A:)
          Length = 205

 Score = 26.5 bits (57), Expect = 4.9
 Identities = 6/40 (15%), Positives = 13/40 (32%)

Query: 253 SQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNN 292
            Q L + +      +     P+L LG     ++   +   
Sbjct: 31  LQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQL 70


>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A
           {Thermus thermophilus} (A:)
          Length = 151

 Score = 26.5 bits (58), Expect = 5.1
 Identities = 10/44 (22%), Positives = 14/44 (31%)

Query: 166 CSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILL 209
                   IN IM  GK  +A      A      +T  E + + 
Sbjct: 14  GDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVF 57


>2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase;
           HET: NAG HDD; 1.71A {Penicillium janthinellum}
           (A:512-688)
          Length = 177

 Score = 26.2 bits (57), Expect = 6.2
 Identities = 4/78 (5%), Positives = 14/78 (17%), Gaps = 7/78 (8%)

Query: 250 VEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNAR 309
                 +  A   +           +          +      L  L            +
Sbjct: 70  AVQFDAVVVADGAEGLFGADSFT--VEPSAGSGASTLYPAGRPLNIL-----LDAFRFGK 122

Query: 310 RLAAICAATVLCGELSLL 327
            + A+ + +       + 
Sbjct: 123 TVGALGSGSDALESGQIS 140


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.321    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0560    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,540,435
Number of extensions: 107607
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 17
Length of query: 351
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 262
Effective length of database: 1,947,404
Effective search space: 510219848
Effective search space used: 510219848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)