RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62] (351 letters) >2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:86-153,A:259-441) Length = 251 Score = 186 bits (473), Expect = 5e-48 Identities = 75/184 (40%), Positives = 108/184 (58%), Gaps = 6/184 (3%) Query: 171 ATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAH 230 AIN I GRGK+ V E I + ++ L+T+ E +I +N KNL+G+ +AG I NAH Sbjct: 69 PAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAH 128 Query: 231 FANMLLAYYLATGQDAANIVEGSQGLT---YAKLHDDSLYFSCTIPNLILGCVGNGKNIP 287 AN++ A Y+A GQDAA V S +T + ++ LY SCT+P++ +G VG G N+ Sbjct: 129 AANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLL 188 Query: 288 AIKNNLTALGCIEERKT--GDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLER 345 + L LG K G+NAR+LA I TV+ GELSL+AA G L+++H+ R Sbjct: 189 PQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAA-GHLVKSHMIHNR 247 Query: 346 MHLN 349 +N Sbjct: 248 SKIN 251 >1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} (A:56-109,A:219-428) Length = 264 Score = 156 bits (397), Expect = 3e-39 Identities = 31/183 (16%), Positives = 56/183 (30%), Gaps = 20/183 (10%) Query: 177 IMGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLL 236 + A++ I + + +I + N N + Sbjct: 52 SSADLRLARAQVRITPQQLETAEFSGEA-VIEGILDAYAFAAVDPYRAATHNKGIMNGID 110 Query: 237 AYYLATGQDAANIVEGSQ----------GLTYAKLHDD-SLYFSCTIPNLILGCVGNGKN 285 +ATG D + G+ LT + ++ L + +P + G K Sbjct: 111 PLIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKT 170 Query: 286 IPAIKNNLTALGCIEERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLER 345 P + +L LG A+ LA I A L L + A G + H+ L Sbjct: 171 HPLAQLSLRILGV-------KTAQALAEIAVAVGLAQNLGAMRALATEG-IQRGHMALHA 222 Query: 346 MHL 348 ++ Sbjct: 223 RNI 225 Score = 32.8 bits (75), Expect = 0.064 Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 5/57 (8%) Query: 9 ISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65 +P +I G V VPL E + + A ++ G + Sbjct: 3 FELPYAVASNFQING----RDVLVPLVVEEPSIVAAASYMAKLARAN-GGFTTSSSA 54 >2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258) Length = 105 Score = 109 bits (273), Expect = 8e-25 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 2/105 (1%) Query: 68 MTRSIFFETENAEMALTALQEITLKK--AEIARVIEQTSQFTRFLQLHSQIAGNLLFLRL 125 MTR A + + + A I + TS+F R +LH+ IAG L++R Sbjct: 1 MTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRF 60 Query: 126 EFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKK 170 + +GDA G NM++K + + + + + +VSGN C+DKK Sbjct: 61 QSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKK 105 >3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua} (A:137-283) Length = 147 Score = 31.9 bits (72), Expect = 0.13 Identities = 12/126 (9%), Positives = 25/126 (19%), Gaps = 3/126 (2%) Query: 121 LFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAI---NGI 177 L L + K + ++ + ++ G + G+ Sbjct: 22 LSCWLYNELNETKYLEWAXKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGV 81 Query: 178 MGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLA 237 + IT +T+ + L G F Sbjct: 82 YIGANLELYRITKEAIYLDTANKTAAISLKELTEDGIFKDEGNGGDEGLFKGIFYRYFTD 141 Query: 238 YYLATG 243 T Sbjct: 142 LIEETA 147 >2i32_E Histone regulatory homolog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens} (E:) Length = 57 Score = 27.4 bits (60), Expect = 2.7 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 264 DSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNARRLAAICAATVLCG 322 ++LYF + + G V NG+++ I+ NL E +T D RR+ +C A + G Sbjct: 2 ENLYFQGSSATSVAGVV-NGESLEDIRKNLLKKQV--ETRTADGRRRITPLCIAQLDTG 57 >2p0n_A Hypothetical protein NMB1532; structural genomics, APC83866, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.41A {Neisseria meningitidis MC58} (A:) Length = 172 Score = 27.4 bits (60), Expect = 2.7 Identities = 7/73 (9%), Positives = 15/73 (20%) Query: 80 EMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFATGDASGHNMVT 139 + E + + + + F LH + F L A Sbjct: 36 AXLSDYIAENGCNQIVLQTIRQIAQYFNVAAPLHHEDEEENFFPLLLQYAPQAQESVDEL 95 Query: 140 KAADAVMDWILSQ 152 + + Sbjct: 96 LRQHIGLHDNWAA 108 >2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 2i2f_A* 2q5f_A* (A:94-250) Length = 157 Score = 27.5 bits (61), Expect = 2.8 Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%) Query: 64 IDERMTRSIFFETENAEMALT--ALQEITLKKAEIARVIE 101 + + T AL E T+K + V++ Sbjct: 4 KVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVD 43 >2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A (A:) Length = 205 Score = 26.5 bits (57), Expect = 4.9 Identities = 6/40 (15%), Positives = 13/40 (32%) Query: 253 SQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNN 292 Q L + + + P+L LG ++ + Sbjct: 31 LQRLLWVRQAATLNHIDEVWPSLFLGDAYAARDKSKLIQL 70 >1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} (A:) Length = 151 Score = 26.5 bits (58), Expect = 5.1 Identities = 10/44 (22%), Positives = 14/44 (31%) Query: 166 CSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEKIILL 209 IN IM GK +A A +T E + + Sbjct: 14 GDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVF 57 >2iuf_A Catalase; compound I, hydrogen peroxide, oxidoreductase; HET: NAG HDD; 1.71A {Penicillium janthinellum} (A:512-688) Length = 177 Score = 26.2 bits (57), Expect = 6.2 Identities = 4/78 (5%), Positives = 14/78 (17%), Gaps = 7/78 (8%) Query: 250 VEGSQGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNAR 309 + A + + + L L + Sbjct: 70 AVQFDAVVVADGAEGLFGADSFT--VEPSAGSGASTLYPAGRPLNIL-----LDAFRFGK 122 Query: 310 RLAAICAATVLCGELSLL 327 + A+ + + + Sbjct: 123 TVGALGSGSDALESGQIS 140 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.321 0.134 0.395 Gapped Lambda K H 0.267 0.0560 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,540,435 Number of extensions: 107607 Number of successful extensions: 219 Number of sequences better than 10.0: 1 Number of HSP's gapped: 212 Number of HSP's successfully gapped: 17 Length of query: 351 Length of database: 4,956,049 Length adjustment: 89 Effective length of query: 262 Effective length of database: 1,947,404 Effective search space: 510219848 Effective search space used: 510219848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.3 bits)