RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62] (351 letters) >2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... Length = 441 Score = 272 bits (698), Expect = 7e-74 Identities = 123/351 (35%), Positives = 188/351 (53%), Gaps = 13/351 (3%) Query: 6 VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65 + + +P+ GP+ + + +VP+AT E L S RG L G + ++ Sbjct: 97 IGYMPIPVGVAGPLCLDE----KEFQVPMATTEGCLVASTNRGCRAIGLG-GGASSRVLA 151 Query: 66 ERMTRSIFFETENAE--MALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFL 123 + MTR A + A E + A I + TS+F R +LH+ IAG L++ Sbjct: 152 DGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYI 211 Query: 124 RLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKN 183 R + +GDA G NM++K + + + + + +VSGN C+DKK AIN I GRGK+ Sbjct: 212 RFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKS 271 Query: 184 FVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATG 243 V E I + ++ L+T+ E +I +N KNL+G+ +AG I NAH AN++ A Y+A G Sbjct: 272 VVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACG 331 Query: 244 QDAANIVEGSQGLT---YAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE 300 QDAA V S +T + ++ LY SCT+P++ +G VG G N+ + L LG Sbjct: 332 QDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQG 391 Query: 301 ERKT--GDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349 K G+NAR+LA I TV+ GELSL+AA G L+++H+ R +N Sbjct: 392 ACKDNPGENARQLARIVCGTVMAGELSLMAALAA-GHLVKSHMIHNRSKIN 441 >1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A* Length = 428 Score = 189 bits (482), Expect = 7e-49 Identities = 57/362 (15%), Positives = 102/362 (28%), Gaps = 46/362 (12%) Query: 6 VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65 + + +P +I G V VPL E + + A ++ G + Sbjct: 55 IGTFELPYAVASNFQING----RDVLVPLVVEEPSIVAAASYMAKLARAN-GGFTTSSSA 109 Query: 66 ERMTRSIFFETENAEMALTA--------LQEITLKKAEIARVIEQTSQFTRFLQLHSQIA 117 M + + + E+ +K ++ + + Sbjct: 110 PLMHAQVQIVGIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPR 169 Query: 118 GNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGI 177 G +L L DA G N V A+AV + + + N+ + A A Sbjct: 170 GPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARA---- 225 Query: 178 MGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLA 237 + S E +I + N N + Sbjct: 226 ----------QVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDP 275 Query: 238 YYLATGQDAANIVEGS----------QGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNI- 286 +ATG D + G+ LT + ++ + +G VG Sbjct: 276 LIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTH 335 Query: 287 PAIKNNLTALGCIEERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERM 346 P + +L LG A+ LA I A L L + A G + H+ L Sbjct: 336 PLAQLSLRILGV-------KTAQALAEIAVAVGLAQNLGAMRALATEG-IQRGHMALHAR 387 Query: 347 HL 348 ++ Sbjct: 388 NI 389 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 46.5 bits (110), Expect = 9e-06 Identities = 57/340 (16%), Positives = 88/340 (25%), Gaps = 128/340 (37%) Query: 51 ISMLCPDG--IRATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTR 108 +L P A+ + E+ + + TE A + E E +F Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGF-----AADD------EPTTPAELVGKFLG 66 Query: 109 FL--QLHSQIAG-NLLFLRL---EF-----ATGD-----ASGHNMVTKAADAVMDWILSQ 152 ++ + G L L EF D A + I Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK-- 124 Query: 153 WSYLHYGSVSGNICS------------DKKAT--AINGIMGRGKN--FVAEITINRAICQ 196 +Y+ ++ + A AI G G+G + E Sbjct: 125 -NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEE--------- 172 Query: 197 KYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATGQDAANIVEGSQGL 256 LR L T L+G I+ + + L A V +QGL Sbjct: 173 --LRD------LYQTYHVLVGDL----IKFSAETLSE------LIRTTLDAEKVF-TQGL 213 Query: 257 TYAK-LHD-----DSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNARR 310 + L + D Y +IP + C P I G Sbjct: 214 NILEWLENPSNTPDKDYLL-SIP---ISC-------PLI-------G------------- 242 Query: 311 LAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNG 350 + + V L PGEL R +L G Sbjct: 243 VIQLAHYVVTAKLLGF-----TPGEL--------RSYLKG 269 Score = 38.0 bits (88), Expect = 0.003 Identities = 52/280 (18%), Positives = 79/280 (28%), Gaps = 140/280 (50%) Query: 6 VSS-ISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR---- 60 +S IS P+ IG VIQ LA Y V A + P +R Sbjct: 232 LSIPISCPL--IG-------VIQ------LAHY------VVT--AKLLGFTPGELRSYLK 268 Query: 61 -----------ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRF 109 A I E + FF + A+T L F F Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFV--SVRKAITVL-------------------F--F 305 Query: 110 LQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAV---------MDWILSQWSYLHYGS 160 + + A L S ++ D++ M L S Sbjct: 306 IGVRCYEAYPNTSL-------PPS---IL---EDSLENNEGVPSPM---L---------S 340 Query: 161 VSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEK----IILLNTQKNLI 216 +S + + V + +N+ +L P I L+N KNL+ Sbjct: 341 ISN--LT--------------QEQVQDY-VNK--TNSHL---PAGKQVEISLVNGAKNLV 378 Query: 217 GTFLAGGIRSANAHFANML--LAYYL-----ATGQDAANI 249 ++G +S L L L +G D + I Sbjct: 379 ---VSGPPQS--------LYGLNLTLRKAKAPSGLDQSRI 407 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 27.9 bits (61), Expect = 3.5 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 18/113 (15%) Query: 21 ITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID-----ERMTRSIFFE 75 I GN D V L +EY L+ S L DG+RA I ++ ++I Sbjct: 1406 IPGNRNADNVDKILEQFEYVLYPS-------KTLKTDGVRAVSITSFGFGQKGGQAIVVH 1458 Query: 76 TENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFA 128 + A+T + +A+V + +F H+ + N LF+ E A Sbjct: 1459 PDYLYGAITEDR----YNEYVAKVSAREKSAYKF--FHNGMIYNKLFVSKEHA 1505 >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Length = 729 Score = 26.5 bits (58), Expect = 8.9 Identities = 2/24 (8%), Positives = 11/24 (45%) Query: 192 RAICQKYLRTSPEKIILLNTQKNL 215 + + + ++ + I ++ +N Sbjct: 46 KKLMDEAIKDYDKNIRFIDLDENS 69 >3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294 Score = 26.4 bits (58), Expect = 9.6 Identities = 6/32 (18%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Query: 262 HDDSLYFSCTIPNLILG-CVGNGKNIPAIKNN 292 H+ + ++ P+LI+G C+ +++ ++ Sbjct: 7 HELGMNYNFIRPDLIVGSCLQTPEDVDKLRKI 38 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.134 0.395 Gapped Lambda K H 0.267 0.0602 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,893,704 Number of extensions: 126541 Number of successful extensions: 328 Number of sequences better than 10.0: 1 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 9 Length of query: 351 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 258 Effective length of database: 3,438,538 Effective search space: 887142804 Effective search space used: 887142804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.0 bits)