RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|255764509|ref|YP_003065434.2| hydroxymethylglutaryl-coenzyme
A (HMG-CoA) reductase [Candidatus Liberibacter asiaticus str. psy62]
         (351 letters)



>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase,
           cholesterol, biocynthesis, HMG-COA, NADPH, statin,
           alternative splicing; HET: RIE; 1.70A {Homo sapiens}
           PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A*
           3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A*
           1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A*
           ...
          Length = 441

 Score =  272 bits (698), Expect = 7e-74
 Identities = 123/351 (35%), Positives = 188/351 (53%), Gaps = 13/351 (3%)

Query: 6   VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65
           +  + +P+   GP+ +       + +VP+AT E  L  S  RG     L   G  + ++ 
Sbjct: 97  IGYMPIPVGVAGPLCLDE----KEFQVPMATTEGCLVASTNRGCRAIGLG-GGASSRVLA 151

Query: 66  ERMTRSIFFETENAE--MALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFL 123
           + MTR        A     + A  E +   A I    + TS+F R  +LH+ IAG  L++
Sbjct: 152 DGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYI 211

Query: 124 RLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGIMGRGKN 183
           R +  +GDA G NM++K  +  +  +   +  +   +VSGN C+DKK  AIN I GRGK+
Sbjct: 212 RFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKS 271

Query: 184 FVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATG 243
            V E  I   + ++ L+T+ E +I +N  KNL+G+ +AG I   NAH AN++ A Y+A G
Sbjct: 272 VVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACG 331

Query: 244 QDAANIVEGSQGLT---YAKLHDDSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIE 300
           QDAA  V  S  +T    +   ++ LY SCT+P++ +G VG G N+   +  L  LG   
Sbjct: 332 QDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQG 391

Query: 301 ERKT--GDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLN 349
             K   G+NAR+LA I   TV+ GELSL+AA    G L+++H+   R  +N
Sbjct: 392 ACKDNPGENARQLARIVCGTVMAGELSLMAALAA-GHLVKSHMIHNRSKIN 441


>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
           oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A
           {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB:
           1qay_A* 1qax_A* 1r7i_A 1t02_A*
          Length = 428

 Score =  189 bits (482), Expect = 7e-49
 Identities = 57/362 (15%), Positives = 102/362 (28%), Gaps = 46/362 (12%)

Query: 6   VSSISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID 65
           + +  +P       +I G      V VPL   E  +  +    A ++     G   +   
Sbjct: 55  IGTFELPYAVASNFQING----RDVLVPLVVEEPSIVAAASYMAKLARAN-GGFTTSSSA 109

Query: 66  ERMTRSIFFETENAEMALTA--------LQEITLKKAEIARVIEQTSQFTRFLQLHSQIA 117
             M   +        +            + E+  +K ++   +    +            
Sbjct: 110 PLMHAQVQIVGIQDPLNARLSLLRRKDEIIELANRKDQLLNSLGGGCRDIEVHTFADTPR 169

Query: 118 GNLLFLRLEFATGDASGHNMVTKAADAVMDWILSQWSYLHYGSVSGNICSDKKATAINGI 177
           G +L   L     DA G N V   A+AV   + +         +  N+   + A A    
Sbjct: 170 GPMLVAHLIVDVRDAMGANTVNTMAEAVAPLMEAITGGQVRLRILSNLADLRLARA---- 225

Query: 178 MGRGKNFVAEITINRAICQKYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLA 237
                              +    S E +I                  + N    N +  
Sbjct: 226 ----------QVRITPQQLETAEFSGEAVIEGILDAYAFAAVDPYRAATHNKGIMNGIDP 275

Query: 238 YYLATGQDAANIVEGS----------QGLTYAKLHDDSLYFSCTIPNLILGCVGNGKNI- 286
             +ATG D   +  G+            LT  +  ++          + +G VG      
Sbjct: 276 LIVATGNDWRAVEAGAHAYACRSGHYGSLTTWEKDNNGHLVGTLEMPMPVGLVGGATKTH 335

Query: 287 PAIKNNLTALGCIEERKTGDNARRLAAICAATVLCGELSLLAAQTNPGELMEAHLRLERM 346
           P  + +L  LG          A+ LA I  A  L   L  + A    G +   H+ L   
Sbjct: 336 PLAQLSLRILGV-------KTAQALAEIAVAVGLAQNLGAMRALATEG-IQRGHMALHAR 387

Query: 347 HL 348
           ++
Sbjct: 388 NI 389


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 46.5 bits (110), Expect = 9e-06
 Identities = 57/340 (16%), Positives = 88/340 (25%), Gaps = 128/340 (37%)

Query: 51  ISMLCPDG--IRATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTR 108
             +L P      A+ + E+  + +   TE       A  +      E     E   +F  
Sbjct: 18  HVLLVPTASFFIASQLQEQFNKILPEPTEGF-----AADD------EPTTPAELVGKFLG 66

Query: 109 FL--QLHSQIAG-NLLFLRL---EF-----ATGD-----ASGHNMVTKAADAVMDWILSQ 152
           ++   +     G     L L   EF        D     A              + I   
Sbjct: 67  YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK-- 124

Query: 153 WSYLHYGSVSGNICS------------DKKAT--AINGIMGRGKN--FVAEITINRAICQ 196
            +Y+    ++                 +  A   AI G  G+G    +  E         
Sbjct: 125 -NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG--GQGNTDDYFEE--------- 172

Query: 197 KYLRTSPEKIILLNTQKNLIGTFLAGGIRSANAHFANMLLAYYLATGQDAANIVEGSQGL 256
             LR       L  T   L+G      I+ +    +       L      A  V  +QGL
Sbjct: 173 --LRD------LYQTYHVLVGDL----IKFSAETLSE------LIRTTLDAEKVF-TQGL 213

Query: 257 TYAK-LHD-----DSLYFSCTIPNLILGCVGNGKNIPAIKNNLTALGCIEERKTGDNARR 310
              + L +     D  Y   +IP   + C       P I       G             
Sbjct: 214 NILEWLENPSNTPDKDYLL-SIP---ISC-------PLI-------G------------- 242

Query: 311 LAAICAATVLCGELSLLAAQTNPGELMEAHLRLERMHLNG 350
           +  +    V    L        PGEL        R +L G
Sbjct: 243 VIQLAHYVVTAKLLGF-----TPGEL--------RSYLKG 269



 Score = 38.0 bits (88), Expect = 0.003
 Identities = 52/280 (18%), Positives = 79/280 (28%), Gaps = 140/280 (50%)

Query: 6   VSS-ISMPMRWIGPMKITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIR---- 60
           +S  IS P+  IG       VIQ      LA Y       V   A +    P  +R    
Sbjct: 232 LSIPISCPL--IG-------VIQ------LAHY------VVT--AKLLGFTPGELRSYLK 268

Query: 61  -----------ATLIDERMTRSIFFETENAEMALTALQEITLKKAEIARVIEQTSQFTRF 109
                      A  I E  +   FF   +   A+T L                   F  F
Sbjct: 269 GATGHSQGLVTAVAIAETDSWESFFV--SVRKAITVL-------------------F--F 305

Query: 110 LQLHSQIAGNLLFLRLEFATGDASGHNMVTKAADAV---------MDWILSQWSYLHYGS 160
           + +    A     L         S   ++    D++         M   L         S
Sbjct: 306 IGVRCYEAYPNTSL-------PPS---IL---EDSLENNEGVPSPM---L---------S 340

Query: 161 VSGNICSDKKATAINGIMGRGKNFVAEITINRAICQKYLRTSPEK----IILLNTQKNLI 216
           +S    +              +  V +  +N+     +L   P      I L+N  KNL+
Sbjct: 341 ISN--LT--------------QEQVQDY-VNK--TNSHL---PAGKQVEISLVNGAKNLV 378

Query: 217 GTFLAGGIRSANAHFANML--LAYYL-----ATGQDAANI 249
              ++G  +S        L  L   L      +G D + I
Sbjct: 379 ---VSGPPQS--------LYGLNLTLRKAKAPSGLDQSRI 407


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 27.9 bits (61), Expect = 3.5
 Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 21   ITGNVIQDKVKVPLATYEYPLWHSVKRGAHISMLCPDGIRATLID-----ERMTRSIFFE 75
            I GN   D V   L  +EY L+ S         L  DG+RA  I      ++  ++I   
Sbjct: 1406 IPGNRNADNVDKILEQFEYVLYPS-------KTLKTDGVRAVSITSFGFGQKGGQAIVVH 1458

Query: 76   TENAEMALTALQEITLKKAEIARVIEQTSQFTRFLQLHSQIAGNLLFLRLEFA 128
             +    A+T  +        +A+V  +     +F   H+ +  N LF+  E A
Sbjct: 1459 PDYLYGAITEDR----YNEYVAKVSAREKSAYKF--FHNGMIYNKLFVSKEHA 1505


>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
           protein, structural protein; 2.70A {Staphylococcus
           epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
          Length = 729

 Score = 26.5 bits (58), Expect = 8.9
 Identities = 2/24 (8%), Positives = 11/24 (45%)

Query: 192 RAICQKYLRTSPEKIILLNTQKNL 215
           + +  + ++   + I  ++  +N 
Sbjct: 46  KKLMDEAIKDYDKNIRFIDLDENS 69


>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity
           phosphatase, carbohydrate BIND hydrolase; 2.40A
           {Arabidopsis thaliana}
          Length = 294

 Score = 26.4 bits (58), Expect = 9.6
 Identities = 6/32 (18%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 262 HDDSLYFSCTIPNLILG-CVGNGKNIPAIKNN 292
           H+  + ++   P+LI+G C+   +++  ++  
Sbjct: 7   HELGMNYNFIRPDLIVGSCLQTPEDVDKLRKI 38


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,893,704
Number of extensions: 126541
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 318
Number of HSP's successfully gapped: 9
Length of query: 351
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 258
Effective length of database: 3,438,538
Effective search space: 887142804
Effective search space used: 887142804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)