HHsearch alignment for GI: 255764510 and conserved domain: cd06291

>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=90.94  E-value=1.1  Score=23.30  Aligned_cols=179  Identities=14%  Similarity=0.166  Sum_probs=92.3

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHH-HHHHHHHHHCCCCCEECCCHHHHHHHHHHCCCC
Q ss_conf             99999998798299942100000785-2001644758799984846-799988620013630004158999976410122
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSE-SLSTLPANFCRHTPIFAIGEASACLARQKGFTQ   91 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~-av~~~~~~~~~~~~~~~vg~~t~~~~~~~~~~~   91 (232)
T Consensus        20 gi~~~~~~~Gy~l~i~~s~~~~~~e~~~l~~l~~~~vDGiI~~~~~~~~~---~~~~~~iPvV~~d~~~~-----~~~~~   91 (265)
T cd06291          20 AVEKELYKKGYKLILCNSDNDPEKEREYLEMLRQNQVDGIIAGTHNLGIE---EYENIDLPIVSFDRYLS-----ENIPI   91 (265)
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH---HHHHCCCCEEEEECCCC-----CCCCE
T ss_conf             99999998799899996899989999999999856998587417884099---99977999999705579-----99998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC--------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf             35444545678999864220127775389721567562--------0146898469825676887504689998899986
Q gi|255764510|r   92 IFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF--------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL  163 (232)
Q Consensus        92 ~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~--------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~  163 (232)
T Consensus        92 V~~---Dn~~~~~~a~~~L~-~~Ghr~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~  167 (265)
T cd06291          92 VSS---DNYEGGRLAAEELI-ERGCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQENFDDAEKKEEIKEL  167 (265)
T ss_pred             EEE---CHHHHHHHHHHHHH-HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf             997---76999999999999-73996499996688887489999999999999769996089976889869999999999


Q ss_pred             H---CCCCEEEEECHHHHHHHHHHCCHHHC----CEEEEECCHHHHHH
Q ss_conf             2---37838998078999999971354405----80399718899999
Q gi|255764510|r  164 L---QNADAILFYARSSVLYFFSLPLPAKI----SAAFLCLSNNIASA  204 (232)
Q Consensus       164 ~---~~~d~i~f~S~~~v~~~~~~~~~~~~----~~~~~~ig~~tA~~  204 (232)
T Consensus       168 l~~~~~~~Ai~~~nD~~A~g~~~al~~~g~~vP~disvigfDd~~~~~  215 (265)
T cd06291         168 LEEYPDIDGIFASNDLTAILVLKEAQQRGIRVPEDLQIIGYDGTKLTR  215 (265)
T ss_pred             HHCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHH
T ss_conf             855999884321668999999999998199999986999988809998