HHsearch alignment for GI: 255764510 and conserved domain: cd06578
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=100.00 E-value=3e-40 Score=260.84 Aligned_cols=223 Identities=21% Similarity=0.202 Sum_probs=191.1
Q ss_pred EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCC---CCCCCCCCCEEEEECHHHHHHHHHHH-------CCCCC
Q ss_conf 898589688699999999879829994210000078520---01644758799984846799988620-------01363
Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESV---FLAMQQSYGAIAITSSESLSTLPANF-------CRHTP 72 (232)
Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~---~~~~~~~~d~iiftS~~av~~~~~~~-------~~~~~ 72 (232)
T Consensus 1 IlitRp~~~~~~~~~~l~~~G~~~~~~P~~~i~~~~~~~~~~~~~~l~~~d~iiftS~naV~~~~~~l~~~~~~~~~~~~ 80 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGLK 80 (239)
T ss_pred CEECCCHHHHHHHHHHHHHCCCCEEEECCEEEEECCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCHHCCCC
T ss_conf 98757757889999999988998999678788628838899998614578999996889999999999861730113686
Q ss_pred EECCCHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEEC
Q ss_conf 0004158999976410122354-445456789998642201277753897215675620146898469825676887504
Q gi|255764510|r 73 IFAIGEASACLARQKGFTQIFH-GKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQ 151 (232)
Q Consensus 73 ~~~vg~~t~~~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~ 151 (232)
T Consensus 81 ~~aVG~~Ta~~l~~~g~~~~~~~~~~~se~L~~~~~~~---~~~~~~il~~~g~~~~~~L~~~L~~~g~~v~~~~~Y~~~ 157 (239)
T cd06578 81 IAAVGPKTAEALREAGLTADFVPEEGDSEGLLELLELQ---DGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTV 157 (239)
T ss_pred EEECCHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHH---CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEEEEEC
T ss_conf 88448899999997299855778889999999999873---468986999847877568999999789867899886651
Q ss_pred CCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHHCCHH----HCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf 6899988999862-378389980789999999713544----05803997188999999976996699879999889999
Q gi|255764510|r 152 DIAYPETTMKNLL-QNADAILFYARSSVLYFFSLPLPA----KISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLK 226 (232)
Q Consensus 152 ~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~~~~~----~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~ 226 (232)
T Consensus 158 ~~~~~~~~~~~i~~~~~~~i~ftS~~~~~~~~~~~~~~~~~~~~~~~~v~ig~~ta~~l~~~g~~~~~~a~~~~~~~li~ 237 (239)
T cd06578 158 PPDLDAELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRALLKNVKIAAIGPRTAEALRELGLKVVIVAESPTLEALLE 237 (239)
T ss_pred CCCCCHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHH
T ss_conf 78888899999974898899990999999999986664156750988999899999999976998169849989699996
Q ss_pred HH
Q ss_conf 98
Q gi|255764510|r 227 LL 228 (232)
Q Consensus 227 al 228 (232)
T Consensus 238 ~i 239 (239)
T cd06578 238 AL 239 (239)
T ss_pred HC
T ss_conf 39