Query         gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs    102 out of 2643
Neff          9.6 
Searched_HMMs 33803
Date          Sat Jun  4 22:49:20 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764510.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1jr2_A Uroporphyrinogen-III s  99.8 3.8E-20 1.1E-24  139.8   9.8  123   27-154     1-139 (139)
  2 >1wcw_A Uroporphyrinogen III s  99.4 3.6E-13 1.1E-17   97.9   8.4   95   46-146    10-114 (114)
  3 >3d8t_A Uroporphyrinogen-III s  99.3 7.8E-12 2.3E-16   89.9   9.3   93   46-146    11-115 (116)
  4 >3d8t_A Uroporphyrinogen-III s  98.8 3.8E-09 1.1E-13   73.8   4.9   75  157-231     4-85  (116)
  5 >1wcw_A Uroporphyrinogen III s  98.6 2.5E-08 7.4E-13   68.9   4.1   71  160-230     6-83  (114)
  6 >1jr2_A Uroporphyrinogen-III s  98.5 3.6E-07 1.1E-11   61.9   7.0   67  164-231    18-97  (139)
  7 >1jr2_A Uroporphyrinogen-III s  98.3 7.6E-06 2.2E-10   54.0   8.9  110  115-231    20-140 (147)
  8 >1wcw_A Uroporphyrinogen III s  96.0   0.024   7E-07   33.0   6.6  107  124-230    15-140 (147)
  9 >3d8t_A Uroporphyrinogen-III s  94.5    0.31   9E-06   26.3   8.4  105  120-230    36-149 (156)
 10 >1jr2_A Uroporphyrinogen-III s  94.4   0.088 2.6E-06   29.6   5.2  103    1-106    22-137 (147)
 11 >3llv_A Exopolyphosphatase-rel  86.2     2.1 6.1E-05   21.4   7.0  117  114-230     4-137 (141)
 12 >3hut_A Putative branched-chai  85.6     1.8 5.4E-05   21.7   5.1   85  114-199    14-105 (119)
 13 >2a5l_A Trp repressor binding   85.2     1.3 3.9E-05   22.6   4.2   67    1-67      6-97  (200)
 14 >2ywj_A Glutamine amidotransfe  84.7     2.5 7.3E-05   20.9   7.5   77    1-88      1-86  (186)
 15 >1usg_A Leucine-specific bindi  84.1     2.6 7.7E-05   20.8   8.0   96  113-208    14-119 (150)
 16 >2zki_A 199AA long hypothetica  83.2     1.4   4E-05   22.5   3.6   55   12-66     21-95  (199)
 17 >1vme_A Flavoprotein; TM0755,   81.8     1.5 4.3E-05   22.3   3.3   46   12-57     20-65  (147)
 18 >1gpw_B Amidotransferase HISH;  81.5       1 3.1E-05   23.1   2.5   81    1-88      1-95  (201)
 19 >3fwz_A Inner membrane protein  81.4     3.3 9.8E-05   20.1   9.2  116  114-229     5-138 (140)
 20 >3lkb_A Probable branched-chai  81.0     3.5  0.0001   20.0  10.2  106  105-210     8-123 (172)
 21 >3h5l_A Putative branched-chai  79.9     3.7 0.00011   19.8   7.6  100  108-207    17-127 (182)
 22 >3lop_A Substrate binding peri  79.8     3.8 0.00011   19.8   5.3   83  114-197    17-106 (162)
 23 >1sc6_A PGDH, D-3-phosphoglyce  79.5     3.4  0.0001   20.0   4.6   93    1-98      5-102 (133)
 24 >1bwd_A ADT, protein (inosamin  78.5     1.3 3.8E-05   22.6   2.2   32    1-32     10-46  (50)
 25 >1jdw_A L-arginine\:glycine am  78.2     1.3   4E-05   22.5   2.2   32    1-32     10-46  (50)
 26 >2eyq_A TRCF, transcription-re  77.9     4.3 0.00013   19.4   6.3   77    3-79     46-141 (206)
 27 >3ha2_A NADPH-quinone reductas  74.9     5.2 0.00015   19.0   4.6   41  131-175    20-60  (177)
 28 >3f2v_A General stress protein  74.2     3.8 0.00011   19.8   3.6   58    1-58      2-68  (192)
 29 >1d4a_A DT-diaphorase, quinone  73.9       3   9E-05   20.4   3.1   31    1-31      3-41  (225)
 30 >2cuk_A Glycerate dehydrogenas  73.3     3.6 0.00011   19.9   3.3   90    1-95      1-95  (128)
 31 >2e4u_A Metabotropic glutamate  72.5       6 0.00018   18.6   4.3   83  115-197    16-107 (177)
 32 >1id1_A Putative potassium cha  72.4       6 0.00018   18.6   6.0  113  117-229     4-138 (153)
 33 >1sg0_A NRH dehydrogenase [qui  71.3     6.4 0.00019   18.4   4.5   31    1-31      3-41  (230)
 34 >2nv0_A Glutamine amidotransfe  71.3     6.4 0.00019   18.4   4.7   77    1-88      2-90  (196)
 35 >3geb_A EYES absent homolog 2;  71.1     6.4 0.00019   18.4   4.2   46  186-231    84-131 (133)
 36 >3evt_A Phosphoglycerate dehyd  70.7     6.6 0.00019   18.4   4.4   86    1-95      2-91  (134)
 37 >2h1q_A Hypothetical protein;   70.6     6.6  0.0002   18.3   6.2  149   74-230    94-253 (270)
 38 >2o4c_A Erythronate-4-phosphat  70.5     5.2 0.00015   18.9   3.6   56    1-67      1-56  (120)
 39 >3fvw_A Putative NAD(P)H-depen  70.0     6.6  0.0002   18.3   4.1   58    1-58      3-77  (192)
 40 >1ydg_A Trp repressor binding   69.8     3.6 0.00011   19.9   2.7   57    1-57      7-87  (211)
 41 >2vpi_A GMP synthase; guanine   69.7     6.9  0.0002   18.2   5.7   83    1-89     25-115 (218)
 42 >1ka9_H Imidazole glycerol pho  67.9     7.6 0.00022   18.0   5.2   49    1-60      3-52  (200)
 43 >3klb_A Putative flavoprotein;  65.4     5.6 0.00016   18.8   2.9   25  166-190    78-109 (162)
 44 >3hr4_A Nitric oxide synthase,  61.5      10  0.0003   17.3   4.1   50    1-57      1-55  (179)
 45 >2d59_A Hypothetical protein P  61.0      10  0.0003   17.2   5.0   99  115-213    21-128 (144)
 46 >2q62_A ARSH; alpha/beta, flav  60.1     9.5 0.00028   17.4   3.3   19  131-149    57-75  (247)
 47 >1ycg_A Nitric oxide reductase  59.7       7 0.00021   18.2   2.6   41   14-57     22-62  (149)
 48 >1h70_A NG, NG-dimethylarginin  59.6     8.1 0.00024   17.8   2.9   19  197-215    56-74  (82)
 49 >2pi1_A D-lactate dehydrogenas  58.7     6.5 0.00019   18.4   2.3  167    1-177     1-205 (334)
 50 >3ff4_A Uncharacterized protei  58.3     5.8 0.00017   18.7   1.9   98  116-213     4-109 (122)
 51 >1qsg_A Enoyl-[acyl-carrier-pr  57.9      12 0.00034   16.9   5.7   64    2-68     11-82  (265)
 52 >2q9u_A A-type flavoprotein; f  57.9     8.9 0.00026   17.6   2.9   41   14-57     22-62  (160)
 53 >3i09_A Periplasmic branched-c  56.8      12 0.00036   16.8   7.6   79  114-192    16-100 (191)
 54 >1o1y_A Conserved hypothetical  55.8      13 0.00037   16.7   4.7   85    1-90     13-113 (239)
 55 >1kjq_A GART 2, phosphoribosyl  54.8      13 0.00039   16.6   5.5   90  112-211     7-99  (125)
 56 >1wl8_A GMP synthase [glutamin  54.6      13 0.00039   16.6   7.8   84    1-90      1-92  (189)
 57 >2a9v_A GMP synthase; NP_39440  53.9      12 0.00035   16.8   2.9   80    1-88     14-103 (212)
 58 >1czn_A Flavodoxin; FMN bindin  53.6      14  0.0004   16.5   3.9   50    1-58      1-56  (169)
 59 >3gfs_A FMN-dependent NADPH-az  53.6     8.2 0.00024   17.8   2.1   58    1-58      1-73  (174)
 60 >1wwk_A Phosphoglycerate dehyd  53.5      14  0.0004   16.4   3.8   51    1-58      4-54  (121)
 61 >2ohh_A Type A flavoprotein FP  53.3     9.4 0.00028   17.4   2.4   12   46-57     51-62  (150)
 62 >3k9c_A Transcriptional regula  53.3     8.6 0.00025   17.7   2.2   60   15-74     33-92  (159)
 63 >3gyb_A Transcriptional regula  52.9      14 0.00041   16.4   5.6   92  114-205    15-118 (129)
 64 >3k9c_A Transcriptional regula  52.9      14 0.00041   16.4   5.9   85  114-198    15-112 (130)
 65 >1lss_A TRK system potassium u  51.8      15 0.00043   16.3   6.7  114  116-229     4-135 (140)
 66 >1sqs_A Conserved hypothetical  51.4      15 0.00044   16.2   4.3   45   14-58     23-89  (242)
 67 >3d54_D Phosphoribosylformylgl  51.2      15 0.00044   16.2   4.9   79    1-90      3-99  (193)
 68 >2ekl_A D-3-phosphoglycerate d  51.1      13 0.00037   16.7   2.7   50    1-57      6-55  (127)
 69 >2hmt_A YUAA protein; RCK, KTN  50.3      15 0.00046   16.1   7.5  115  115-229     5-137 (144)
 70 >3ks9_A Mglur1, metabotropic g  49.8      16 0.00046   16.1   3.7   75  117-191    18-102 (190)
 71 >1iuk_A Hypothetical protein T  49.7      16 0.00047   16.1   3.6   98  116-213    13-121 (140)
 72 >3hly_A Flavodoxin-like domain  49.5      12 0.00034   16.9   2.3   44   12-58     18-61  (161)
 73 >2gcg_A Glyoxylate reductase/h  49.0      12 0.00035   16.8   2.3   53    1-57      9-62  (140)
 74 >3jvd_A Transcriptional regula  47.2      17 0.00051   15.8   7.3   88  112-199    13-111 (128)
 75 >1t0b_A THUA-like protein; tre  47.0      17 0.00051   15.8   5.5   66   13-81     35-108 (252)
 76 >3eaf_A ABC transporter, subst  46.5      18 0.00052   15.8   5.9  104  104-207     8-124 (181)
 77 >3k4h_A Putative transcription  46.4      18 0.00052   15.8   6.7   91  113-203    14-119 (132)
 78 >3brs_A Periplasmic binding pr  46.0      18 0.00053   15.7   4.8   93  113-206    16-122 (133)
 79 >2amj_A Modulator of drug acti  45.9      12 0.00035   16.8   1.9   14   45-58     67-80  (204)
 80 >1q7r_A Predicted amidotransfe  45.2      18 0.00055   15.7   5.9   79    1-90     24-114 (219)
 81 >2o1m_A Probable amino-acid AB  44.8      19 0.00055   15.6   5.6   70  112-186    22-92  (107)
 82 >1qp8_A Formate dehydrogenase;  44.2      19 0.00057   15.6   3.0   65  113-177    41-105 (183)
 83 >3ftp_A 3-oxoacyl-[acyl-carrie  44.0      19 0.00057   15.5   3.8   30  195-224   185-214 (270)
 84 >2ywd_A Glutamine amidotransfe  44.0      19 0.00057   15.5   4.0   79    1-90      1-94  (191)
 85 >1ykg_A SIR-FP, sulfite reduct  43.0      20 0.00059   15.4   3.4   40   11-57     26-65  (167)
 86 >2hpv_A FMN-dependent NADH-azo  42.7      17 0.00051   15.8   2.4   15   15-29     26-42  (208)
 87 >2rgy_A Transcriptional regula  42.1      21 0.00061   15.4   6.2   87  113-199    15-116 (133)
 88 >3k5p_A D-3-phosphoglycerate d  41.3      21 0.00063   15.3   4.1   21  203-223    97-117 (144)
 89 >1e5d_A Rubredoxin\:oxygen oxi  41.3      21 0.00063   15.3  10.0   92  130-226    22-134 (152)
 90 >2ax3_A Hypothetical protein T  41.1      21 0.00063   15.3   3.7   66   85-151    22-91  (213)
 91 >1pea_A Amidase operon; gene r  40.1      19 0.00057   15.5   2.3   78  114-191    12-97  (179)
 92 >1obo_A Flavodoxin; electron t  39.0      22 0.00065   15.2   2.4   49    1-58      1-56  (169)
 93 >3d4o_A Dipicolinate synthase   39.0     8.1 0.00024   17.8   0.2   19   11-29     16-34  (149)
 94 >2o8n_A APOA-I binding protein  38.7      23 0.00069   15.0   3.5   64   88-151    48-118 (265)
 95 >1ja1_A NADPH-cytochrome P450   37.8      24 0.00071   15.0   3.7   43   12-56     39-81  (182)
 96 >1qpz_A PURA, protein (purine   37.1      25 0.00073   14.9   5.6   86  114-199    15-115 (132)
 97 >1dbq_A Purine repressor; tran  37.1      25 0.00073   14.9   5.9   86  114-199    15-115 (132)
 98 >2o20_A Catabolite control pro  36.7      25 0.00074   14.9   6.3   85  114-198    15-112 (130)
 99 >1wdi_A Hypothetical protein T  36.7      25 0.00075   14.8   7.5   91  114-208   175-267 (345)
100 >2ioy_A Periplasmic sugar-bind  36.6      25 0.00075   14.8  10.2  103  113-215    16-130 (133)
101 >1xah_A Sadhqs, 3-dehydroquina  36.5      25 0.00075   14.8   3.0   91  114-205    29-129 (165)
102 >1dlj_A UDP-glucose dehydrogen  35.7      26 0.00077   14.8   2.9   48   12-59     25-78  (96)
103 >3ctp_A Periplasmic binding pr  35.4      26 0.00078   14.7   5.0   90  114-204    15-118 (130)
104 >1yob_A Flavodoxin 2, flavodox  35.3      16 0.00047   16.1   1.2   53    1-58      1-56  (179)
105 >2hqr_A Putative transcription  35.0      27 0.00079   14.7   6.6   69    1-74      1-72  (99)
106 >3egc_A Putative ribose operon  34.8      27  0.0008   14.7   8.1   88  114-201    15-117 (132)
107 >3dbi_A Sugar-binding transcri  34.1      28 0.00082   14.6   7.1   88  114-201    16-118 (133)
108 >3brq_A HTH-type transcription  34.1      28 0.00082   14.6   7.1   88  114-201    16-118 (133)
109 >1f4p_A Flavodoxin; electron t  33.9      28 0.00083   14.6   4.0   43   10-58     16-58  (147)
110 >2zkl_A Capsular polysaccharid  33.6      28 0.00084   14.5   3.8   30    1-30      1-31  (130)
111 >1ag9_A Flavodoxin; electron t  33.6      21 0.00063   15.3   1.6   38   12-58     18-55  (175)
112 >1n2s_A DTDP-4-, DTDP-glucose   33.5      28 0.00082   14.6   2.2   58    1-58      1-64  (299)
113 >2g1u_A Hypothetical protein T  33.2      29 0.00085   14.5   6.2  117  112-229    15-150 (155)
114 >2v1x_A ATP-dependent DNA heli  33.1      29 0.00085   14.5   3.5   45  100-144    16-61  (138)
115 >3bul_A Methionine synthase; t  32.9      29 0.00086   14.5   9.1   17   14-30     23-39  (157)
116 >5nul_A Flavodoxin; electron t  32.7      29 0.00087   14.5   3.0   40   11-57     15-54  (138)
117 >1yqe_A Hypothetical UPF0204 p  32.2      30 0.00088   14.4   3.9   59    3-61      8-83  (185)
118 >2duw_A Putative COA-binding p  32.2      30 0.00088   14.4   2.4   97  116-212    13-120 (145)
119 >1t0i_A YLR011WP; FMN binding   32.2      30 0.00088   14.4   5.8   14   45-58     81-94  (191)
120 >1vb5_A Translation initiation  31.2      31 0.00092   14.3   6.1  102  113-218   107-220 (276)
121 >2h0a_A TTHA0807, transcriptio  31.1      31 0.00092   14.3   2.5   64   14-77     20-85  (142)
122 >1y81_A Conserved hypothetical  31.1      31 0.00092   14.3   5.4   99  114-212    12-119 (138)
123 >1jvn_A Glutamine, bifunctiona  31.0      31 0.00092   14.3   4.7   76    2-86      6-95  (218)
124 >3e61_A Putative transcription  30.6      32 0.00094   14.2   3.5   16  166-181    64-79  (120)
125 >3e4r_A Nitrate transport prot  30.4      32 0.00095   14.2   4.8   69  112-184    18-87  (98)
126 >3d3j_A Enhancer of mRNA-decap  30.4      32 0.00095   14.2   4.7   72   81-152    89-172 (306)
127 >2ggs_A 273AA long hypothetica  29.9      33 0.00097   14.2   3.5   31    1-31      1-32  (273)
128 >2dc1_A L-aspartate dehydrogen  29.2      34 0.00099   14.1   6.8   75    1-75      1-79  (133)
129 >1jye_A Lactose operon repress  29.1      34   0.001   14.1   6.3   85  114-198    15-112 (130)
130 >2b4a_A BH3024; 10175646, stru  29.0      34   0.001   14.1   2.1  107  115-230    14-127 (138)
131 >3d4o_A Dipicolinate synthase   28.9      34   0.001   14.1   2.6  108  104-217    18-142 (144)
132 >2p5y_A UDP-glucose 4-epimeras  28.8      34   0.001   14.1   4.2   30    1-30      1-31  (311)
133 >1rtt_A Conserved hypothetical  28.6      34   0.001   14.0   3.1   58    1-58      7-82  (193)
134 >2i2x_B MTAC, methyltransferas  28.5      34   0.001   14.0   9.0  104  116-226     5-121 (140)
135 >3jy6_A Transcriptional regula  28.4      35   0.001   14.0   2.7   65   15-79     29-94  (159)
136 >3grk_A Enoyl-(acyl-carrier-pr  28.2      35   0.001   14.0   4.5   10  206-215   202-211 (293)
137 >2nac_A NAD-dependent formate   27.8      36  0.0011   14.0   2.3   11   17-27     61-71  (203)
138 >3fni_A Putative diflavin flav  27.7      36  0.0011   13.9   6.2   44   12-57     22-65  (159)
139 >1jx4_A DNA polymerase IV (fam  27.4      30  0.0009   14.4   1.6   17   75-91      3-19  (55)
140 >1dxy_A D-2-hydroxyisocaproate  27.4      36  0.0011   13.9   3.4   53    1-58      1-54  (136)
141 >2w8t_A SPT, serine palmitoylt  27.4      36  0.0011   13.9   3.0  100   50-152     3-114 (164)
142 >2vzf_A NADH-dependent FMN red  27.3      36  0.0011   13.9   3.1   58    1-58      3-79  (197)
143 >2v4n_A Multifunctional protei  27.2      36  0.0011   13.9   3.2   69    1-69      2-82  (233)
144 >3h5o_A Transcriptional regula  27.0      37  0.0011   13.9   7.4   86  114-199    15-115 (132)
145 >3gpi_A NAD-dependent epimeras  26.9      37  0.0011   13.9   3.1   30    1-30      3-33  (286)
146 >3l6u_A ABC-type sugar transpo  26.9      37  0.0011   13.8   9.7  102  114-216    22-136 (138)
147 >3clk_A Transcription regulato  26.8      37  0.0011   13.8   3.0   46   15-60     30-77  (159)
148 >1w2w_B 5-methylthioribose-1-p  26.5      33 0.00097   14.1   1.6   24    6-29     12-36  (38)
149 >3gg2_A Sugar dehydrogenase, U  26.5      38  0.0011   13.8   1.9   66  111-176    11-93  (148)
150 >2iss_D Glutamine amidotransfe  26.4      38  0.0011   13.8   7.0   79    1-90     21-111 (208)
151 >2dwc_A PH0318, 433AA long hyp  26.4      38  0.0011   13.8   6.5   88  114-211    17-107 (108)
152 >2e6c_A 5'-nucleotidase SURE;   26.3      38  0.0011   13.8   3.2   33    1-33      1-37  (244)
153 >3eyw_A C-terminal domain of g  26.1      38  0.0011   13.8   9.4  100  116-215     4-121 (123)
154 >3k1y_A Oxidoreductase; struct  25.9      38  0.0011   13.7   4.4   30  160-189    79-115 (191)
155 >1udb_A Epimerase, UDP-galacto  25.9      39  0.0011   13.7   4.2   30    1-30      1-31  (338)
156 >3bh1_A UPF0371 protein DIP234  25.8      39  0.0011   13.7   4.5   15   11-25     18-32  (344)
157 >3gyb_A Transcriptional regula  25.5      39  0.0012   13.7   3.3   53   13-65     25-77  (151)
158 >1jzt_A Hypothetical 27.5 kDa   25.2      37  0.0011   13.9   1.7   37  115-151    57-97  (246)
159 >3d3k_A Enhancer of mRNA-decap  25.2      40  0.0012   13.7   4.4   40  114-153    83-126 (259)
160 >3ba1_A HPPR, hydroxyphenylpyr  25.0      40  0.0012   13.6   3.1   97  118-223    23-124 (150)
161 >3hcw_A Maltose operon transcr  25.0      40  0.0012   13.6   6.7   87  114-200    15-116 (132)
162 >2fzv_A Putative arsenical res  24.8      40  0.0012   13.6   4.6   74  114-187    56-151 (241)
163 >3lft_A Uncharacterized protei  24.7      41  0.0012   13.6   8.1   87  113-202    13-107 (118)
164 >1h70_A NG, NG-dimethylarginin  24.6      41  0.0012   13.6   2.7   27   11-37     35-61  (72)
165 >2rgy_A Transcriptional regula  24.5      37  0.0011   13.8   1.6   10  166-175    67-76  (132)
166 >1j4a_A D-LDH, D-lactate dehyd  24.1      42  0.0012   13.5   5.6   54    1-57      2-55  (136)
167 >1req_A Methylmalonyl-COA muta  24.1      42  0.0012   13.5   4.7  112  110-228    26-153 (163)
168 >3gv0_A Transcriptional regula  24.0      42  0.0012   13.5   6.3   87  114-200    15-116 (132)
169 >2fz5_A Flavodoxin; alpha/beta  23.5      43  0.0013   13.5   3.7   41   10-57     15-55  (137)
170 >2q5c_A NTRC family transcript  23.2      43  0.0013   13.4   7.0   68  144-215    20-88  (90)
171 >3c3k_A Alanine racemase; stru  23.0      44  0.0013   13.4   3.0   66   14-79     29-95  (154)
172 >1tjy_A Sugar transport protei  22.7      44  0.0013   13.4   9.8   99  114-212    19-131 (151)
173 >2c07_A 3-oxoacyl-(acyl-carrie  21.9      46  0.0014   13.3   2.7   58  167-225   173-231 (285)
174 >3clk_A Transcription regulato  21.6      47  0.0014   13.2   7.0   88  113-200    14-115 (131)
175 >2bll_A Protein YFBG; decarbox  21.5      47  0.0014   13.2   4.6   30    1-30      1-31  (345)
176 >3l83_A Glutamine amido transf  21.5      47  0.0014   13.2   6.9   82    2-88      5-100 (250)
177 >1fs0_G ATP synthase gamma sub  21.3      47  0.0014   13.2   5.4   47   46-92     55-116 (230)
178 >3b6i_A Flavoprotein WRBA; fla  21.2      48  0.0014   13.2   5.6   56    2-57      3-77  (198)
179 >3e3m_A Transcriptional regula  21.1      48  0.0014   13.2   2.2   18  165-182   125-142 (221)
180 >2c0r_A PSAT, phosphoserine am  20.9      48  0.0014   13.2   4.9   19   48-66      3-23  (174)
181 >3ksm_A ABC-type sugar transpo  20.9      48  0.0014   13.1   9.0  108  101-210     7-128 (136)
182 >2g76_A 3-PGDH, D-3-phosphogly  20.8      49  0.0014   13.1   4.5   10  163-172    64-73  (150)
183 >3edo_A Flavoprotein, putative  20.2      50  0.0015   13.1   5.4   25   43-67     71-102 (151)
184 >1ccw_A Protein (glutamate mut  20.2      50  0.0015   13.1   5.5   91  128-224    20-127 (137)

No 1  
>>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:57-195)
Probab=99.83  E-value=3.8e-20  Score=139.79  Aligned_cols=123  Identities=17%  Similarity=0.256  Sum_probs=107.7

Q ss_pred             EEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH----------------CCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             99421000007852001644758799984846799988620----------------01363000415899997641012
Q gi|255764510|r   27 VMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF----------------CRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        27 i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~----------------~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      +++|++++.+++...  ..+.+||||||||+|||++|+..+                ++..+++|+|++|++++.+.|+.
T Consensus         1 i~~p~~~~~~l~~~~--~~l~~~d~iiFTS~~aV~~~~~~l~~~~~~~~~~~~~~~~l~~~~i~~VG~~T~~~L~~~G~~   78 (139)
T 1jr2_A            1 LSFEFLSLPSFSEKL--SHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLD   78 (139)
T ss_dssp             EEEEECCHHHHHHHH--TCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCC
T ss_pred             EEEEECCHHHHHHHH--HCHHHCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCC
T ss_conf             888847838999987--382005689998869999999999872764012455542124785999849999999986993


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC
Q ss_conf             2354445456789998642201277753897215675620146898469825676887504689
Q gi|255764510|r   91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA  154 (232)
Q Consensus        91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~  154 (232)
                      ...+..+.++.+.+++..   ....++++++++|+.++++|.+.|++.|+.|+++++|+|++++
T Consensus        79 ~~~~~~~~~~~L~~~l~~---~~~~~~~iL~~~~~~~~~~L~~~L~~~g~~v~~~~vY~t~~~P  139 (139)
T 1jr2_A           79 TEGETCGNAEKLAEYICS---RESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHP  139 (139)
T ss_dssp             CSCCSCSSHHHHHHHHHT---SCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECT
T ss_pred             CCCCCCCCHHHHHHHHHH---HCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf             336788899999999987---4468982899724665078999998579987334677310488


No 2  
>>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161)
Probab=99.45  E-value=3.6e-13  Score=97.90  Aligned_cols=95  Identities=13%  Similarity=-0.021  Sum_probs=77.6

Q ss_pred             CCCCCEEEEECHHHHHHHHHHHC----------CCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             47587999848467999886200----------13630004158999976410122354445456789998642201277
Q gi|255764510|r   46 QQSYGAIAITSSESLSTLPANFC----------RHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTP  115 (232)
Q Consensus        46 ~~~~d~iiftS~~av~~~~~~~~----------~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  115 (232)
                      .++|||+||||+|||++++....          .+.+++|+|++|+++++++|+.....+...   .++.+..   ...+
T Consensus        10 ~~~~d~iiFTS~~~V~~~~~~~~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~g~~~~~~p~~~---~~e~L~~---~~~~   83 (114)
T 1wcw_A           10 AQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGT---SKSLLPL---LPQG   83 (114)
T ss_dssp             HTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSS---HHHHGGG---SCCC
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHH---HHHHHHH---HCCC
T ss_conf             179999999798999999999987396476784188599997899999997499972275133---8999986---4358


Q ss_pred             CCEEEEECCCCCCCCHHHHHHHCCCEEEEEE
Q ss_conf             7538972156756201468984698256768
Q gi|255764510|r  116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVID  146 (232)
Q Consensus       116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~  146 (232)
                      ++++++++|+.+++.|++.|+++|+.|++++
T Consensus        84 ~~~vl~~~g~~~~~~L~~~L~~~G~~v~~vv  114 (114)
T 1wcw_A           84 RGVAALQLYGKPLPLLENALAERGYRVLPLM  114 (114)
T ss_dssp             CEEEEEECCSSCCHHHHHHHHHTTEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf             8489997079881799999997799766988


No 3  
>>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:72-187)
Probab=99.33  E-value=7.8e-12  Score=89.92  Aligned_cols=93  Identities=14%  Similarity=0.029  Sum_probs=74.9

Q ss_pred             CCCCCEEEEECHHHHHHHHHHHC----------CCCCEECCCHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHCCC
Q ss_conf             47587999848467999886200----------13630004158999976410122354445-45678999864220127
Q gi|255764510|r   46 QQSYGAIAITSSESLSTLPANFC----------RHTPIFAIGEASACLARQKGFTQIFHGKD-NSINLAKIIVEQKVLFT  114 (232)
Q Consensus        46 ~~~~d~iiftS~~av~~~~~~~~----------~~~~~~~vg~~t~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~  114 (232)
                      .++||||||||+|||++++.+..          ...+++|+|++|++++++.|......+.. .++.    +.    ...
T Consensus        11 ~~~~d~iifTS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~G~~~~~~p~~~~~e~----L~----~~l   82 (116)
T 3d8t_A           11 AQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSL----LP----LLP   82 (116)
T ss_dssp             TTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSSGGGG----GG----GCC
T ss_pred             CCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHH----HH----HHH
T ss_conf             1589999998879999999999980975546631786999870189999987998430785468999----98----663


Q ss_pred             CCCEEEEECCCC-CCCCHHHHHHHCCCEEEEEE
Q ss_conf             775389721567-56201468984698256768
Q gi|255764510|r  115 PQKPLIYLGGKP-RNFHFEDYLIEHKIPLRVID  146 (232)
Q Consensus       115 ~~~~vl~~~g~~-~~~~l~~~L~~~g~~v~~~~  146 (232)
                      +++++++++|.. +++.|.+.|+++|+.|+++.
T Consensus        83 ~~~~il~~~~~~~~~~~L~~~L~~~G~~V~~v~  115 (116)
T 3d8t_A           83 QGRGVAALQLYGKPLPLLENALAERGYRVLPLM  115 (116)
T ss_dssp             CCCSEEEEECSSSCCHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf             089789997178873899999997899899997


No 4  
>>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:72-187)
Probab=98.83  E-value=3.8e-09  Score=73.80  Aligned_cols=75  Identities=17%  Similarity=0.039  Sum_probs=63.1

Q ss_pred             HHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC-------CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             8899986237838998078999999971354405-------803997188999999976996699879999889999986
Q gi|255764510|r  157 ETTMKNLLQNADAILFYARSSVLYFFSLPLPAKI-------SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       157 ~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~-------~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      ...+..+..+.|+|+|||+.+|+.|++.+...+.       +.+++|+|+.|++++++.|++++.+++.++.++|++.++
T Consensus         4 ~~~l~~l~~~~d~iifTS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~G~~~~~~p~~~~~e~L~~~l~   83 (116)
T 3d8t_A            4 RDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLLPQ   83 (116)
T ss_dssp             HHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSSGGGGGGGCCC
T ss_pred             HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC
T ss_conf             99999751589999998879999999999980975546631786999870189999987998430785468999986630


Q ss_pred             HC
Q ss_conf             14
Q gi|255764510|r  230 LR  231 (232)
Q Consensus       230 ~~  231 (232)
                      -.
T Consensus        84 ~~   85 (116)
T 3d8t_A           84 GR   85 (116)
T ss_dssp             CC
T ss_pred             CC
T ss_conf             89


No 5  
>>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161)
Probab=98.64  E-value=2.5e-08  Score=68.88  Aligned_cols=71  Identities=17%  Similarity=0.011  Sum_probs=60.0

Q ss_pred             HHHHHCCCCEEEEECHHHHHHHHHHCCHHHC-------CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             9986237838998078999999971354405-------8039971889999999769966998799998899999861
Q gi|255764510|r  160 MKNLLQNADAILFYARSSVLYFFSLPLPAKI-------SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       160 ~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~-------~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      .+....+.|+|+|||+.+|+.|++.+..++.       +.+++|+|+.|++++++.|+.++.+++..+.++|++.+..
T Consensus         6 ~~~i~~~~d~iiFTS~~~V~~~~~~~~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~g~~~~~~p~~~~~e~L~~~~~~   83 (114)
T 1wcw_A            6 VRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLLPQG   83 (114)
T ss_dssp             HHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSSHHHHGGGSCCC
T ss_pred             HHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             998517999999979899999999998739647678418859999789999999749997227513389999864358


No 6  
>>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:57-195)
Probab=98.50  E-value=3.6e-07  Score=61.93  Aligned_cols=67  Identities=10%  Similarity=0.001  Sum_probs=56.3

Q ss_pred             HCCCCEEEEECHHHHHHHHHHCCHHH-------------CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             23783899807899999997135440-------------58039971889999999769966998799998899999861
Q gi|255764510|r  164 LQNADAILFYARSSVLYFFSLPLPAK-------------ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       164 ~~~~d~i~f~S~~~v~~~~~~~~~~~-------------~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      +...|+|+|||+.+|+.|++.+...+             .+.+++|+|+.|++++++.|+.++ +++..+-++|++.+..
T Consensus        18 l~~~d~iiFTS~~aV~~~~~~l~~~~~~~~~~~~~~~~l~~~~i~~VG~~T~~~L~~~G~~~~-~~~~~~~~~L~~~l~~   96 (139)
T 1jr2_A           18 PEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTE-GETCGNAEKLAEYICS   96 (139)
T ss_dssp             GGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCS-CCSCSSHHHHHHHHHT
T ss_pred             HHHCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHH
T ss_conf             200568999886999999999987276401245554212478599984999999998699333-6788899999999987


Q ss_pred             C
Q ss_conf             4
Q gi|255764510|r  231 R  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus        97 ~   97 (139)
T 1jr2_A           97 R   97 (139)
T ss_dssp             S
T ss_pred             H
T ss_conf             4


No 7  
>>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:1-56,A:196-286)
Probab=98.25  E-value=7.6e-06  Score=53.99  Aligned_cols=110  Identities=14%  Similarity=0.061  Sum_probs=81.1

Q ss_pred             CCCEEEEECCC----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH---HCCCCEEEEECHHHHHHHHHHCCH
Q ss_conf             77538972156----75620146898469825676887504689998899986---237838998078999999971354
Q gi|255764510|r  115 PQKPLIYLGGK----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL---LQNADAILFYARSSVLYFFSLPLP  187 (232)
Q Consensus       115 ~~~~vl~~~g~----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~---~~~~d~i~f~S~~~v~~~~~~~~~  187 (232)
                      +..+|+.+...    .+.+-..+.|...|....-++|=-       .-.++..   .+-+..|.||||+.+..-++.+.+
T Consensus        20 ~~MkVLLLKdpk~~~~g~DPYi~EL~~~g~~AtLiPvgi-------qgnlnsyysqqgvpasitFFSPSGltYslkhiqe   92 (147)
T 1jr2_A           20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVGI-------QGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQE   92 (147)
T ss_dssp             --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECTH-------HHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCC-------CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf             633899977999777765899999998899789989852-------0889999873468719997498999999999987


Q ss_pred             H----HCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf             4----0580399718899999997699669987999988999998614
Q gi|255764510|r  188 A----KISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLR  231 (232)
Q Consensus       188 ~----~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~  231 (232)
                      .    ..++++++||++|+.++.+.||.+...|.+|+.++|.+.|++.
T Consensus        93 lsgdniDqiK~~aiGptt~ral~a~g~pV~cTAesPtPq~LaagIRkA  140 (147)
T 1jr2_A           93 LSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIRKA  140 (147)
T ss_dssp             HHGGGGGGSEEEESSHHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHH
T ss_pred             HHHCCCCCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH
T ss_conf             404243681999999999999997699846997989979999999999


No 8  
>>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:1-47,A:162-261)
Probab=96.03  E-value=0.024  Score=33.02  Aligned_cols=107  Identities=17%  Similarity=0.066  Sum_probs=71.5

Q ss_pred             CCCCCCCHHHHHHHCCCEEEEEE----------EEEECCCCCCHHHHHHH--HCCCCEEEEECHHHHHHHHHHCCHHH--
Q ss_conf             56756201468984698256768----------87504689998899986--23783899807899999997135440--
Q gi|255764510|r  124 GKPRNFHFEDYLIEHKIPLRVID----------CYYSQDIAYPETTMKNL--LQNADAILFYARSSVLYFFSLPLPAK--  189 (232)
Q Consensus       124 g~~~~~~l~~~L~~~g~~v~~~~----------vY~~~~~~~~~~~~~~~--~~~~d~i~f~S~~~v~~~~~~~~~~~--  189 (232)
                      |-...+.+..--.+.|+...-.+          .|+..|.+.-.--+.++  .+..|++.|..+-.++.+++-.+..+  
T Consensus        15 glrrke~fkalaeklgf~pllfpvqatekvpvppyrhlpdpegilrleeallrgevdalafvaaiqveflfegakdpkal   94 (147)
T 1wcw_A           15 GLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKAL   94 (147)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEECCCEEEEECCGGSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHH
T ss_pred             CHHHHHHHHHHHHHCCCEEEEECHHHEECCCHHEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             31108999999997799089814165145881586524765789999988633882399965899999999986430145


Q ss_pred             -----CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             -----58039971889999999769966998799998899999861
Q gi|255764510|r  190 -----ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       190 -----~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                           ..++.++.|..||+++++-|.++.+|-+.-...+.+..+.|
T Consensus        95 realntrvkalavgrvtadalrewgvkpfyvdeteRLGSALQgLKR  140 (147)
T 1wcw_A           95 REALNTRVKALAVGRVTADALREWGVKPFYVDETERLGSLLQGFKR  140 (147)
T ss_dssp             HHHHHHTSEEEEESHHHHHHHHHTTCCCSEEECSCCHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
T ss_conf             8986179789998999999999869983698389998999999999


No 9  
>>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:1-63,A:194-286)
Probab=94.47  E-value=0.31  Score=26.34  Aligned_cols=105  Identities=17%  Similarity=0.096  Sum_probs=78.5

Q ss_pred             EEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHH--HHCCCCEEEEECHHHHHHHHHHCCHH-------HC
Q ss_conf             9721567562014689846982567688750468999889998--62378389980789999999713544-------05
Q gi|255764510|r  120 IYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKN--LLQNADAILFYARSSVLYFFSLPLPA-------KI  190 (232)
Q Consensus       120 l~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~--~~~~~d~i~f~S~~~v~~~~~~~~~~-------~~  190 (232)
                      .-..|-....++...+.+.|+.---.++-+-.      --+.+  +.+.+|++.|..+-.++.+++-.+..       +.
T Consensus        36 ~AyaglrRKeeFKalaEKlgftpLLFpvpegi------lrleeavlrgevdalafvaaiqveflfegakdpkalrealnt  109 (156)
T 3d8t_A           36 IAYAGLRRKEEFKALAEKLGFTPLLFPVPEGI------LRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNT  109 (156)
T ss_dssp             EEECCSSCHHHHHHHHHHHTCEEEECCCHHHH------HHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHHHHTT
T ss_pred             EEECCCCHHHHHHHHHHHCCCEEEEECHCCCH------HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             88626153899999999769909981306888------999998764785299967999999999986431145787506


Q ss_pred             CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             8039971889999999769966998799998899999861
Q gi|255764510|r  191 SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       191 ~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      .++.++.|..||+++++-|.++.+|-+.-...+|+.-+.|
T Consensus       110 rvkalavgrvtadalrewgvkpfyvdeterlgslMqgfkR  149 (156)
T 3d8t_A          110 RVKALAVGRVTADALREWGVKPFYVDETERLGSLLQGFKR  149 (156)
T ss_dssp             TSEEEEESHHHHHHHHHTTCCCSEEECSSCHHHHHHHHHH
T ss_pred             CCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH
T ss_conf             9789998999999999869983798189998999999999


No 10 
>>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:1-56,A:196-286)
Probab=94.35  E-value=0.088  Score=29.60  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             CEEEEEC-CHH---HHHHHHHHHHHCCCCEEEECC-EEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH-------C
Q ss_conf             9389858-968---869999999987982999421-000007852001644758799984846799988620-------0
Q gi|255764510|r    1 MYIVITR-PIK---KALRTQEKIQKMGYIPVMMPL-SYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF-------C   68 (232)
Q Consensus         1 M~ilitR-p~~---~a~~~~~~L~~~G~~~i~~Pl-i~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~-------~   68 (232)
                      |+||+.. |.+   ..+..++.|..+|.++...|+ |.-. +  +.-..+..--.-|-|-||.++.+-..+.       .
T Consensus        22 MkVLLLKdpk~~~~g~DPYi~EL~~~g~~AtLiPvgiqgn-l--nsyysqqgvpasitFFSPSGltYslkhiqelsgdni   98 (147)
T 1jr2_A           22 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVGIQGN-L--NSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNI   98 (147)
T ss_dssp             CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECTHHHH-H--HHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGG
T ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHH-H--HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCC
T ss_conf             3899977999777765899999998899789989852088-9--999873468719997498999999999987404243


Q ss_pred             CCCCEECCCHHHHHHHHHHCCCCCCCCCCC-HHHHHHHH
Q ss_conf             136300041589999764101223544454-56789998
Q gi|255764510|r   69 RHTPIFAIGEASACLARQKGFTQIFHGKDN-SINLAKII  106 (232)
Q Consensus        69 ~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~-~~~~~~ll  106 (232)
                      ..+++.++|.+|..++...+......+..+ -..++.-+
T Consensus        99 DqiK~~aiGptt~ral~a~g~pV~cTAesPtPq~LaagI  137 (147)
T 1jr2_A           99 DQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGI  137 (147)
T ss_dssp             GGSEEEESSHHHHHHHHHTTCCCSEECSSSSHHHHHHHH
T ss_pred             CCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHH
T ss_conf             681999999999999997699846997989979999999


No 11 
>>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} (A:)
Probab=86.24  E-value=2.1  Score=21.35  Aligned_cols=117  Identities=12%  Similarity=0.045  Sum_probs=72.8

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE------------CC-CCCCHHHHHHH-HCCCCEEEEECHH--H
Q ss_conf             7775389721567562014689846982567688750------------46-89998899986-2378389980789--9
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS------------QD-IAYPETTMKNL-LQNADAILFYARS--S  177 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~------------~~-~~~~~~~~~~~-~~~~d~i~f~S~~--~  177 (232)
                      ...++++++.+......+.+.|.+.|+.|.-+.--..            .. .....+.+..+ .++.|+|+..++.  .
T Consensus         4 ~~~~~v~IiG~G~iG~~ia~~L~~~G~~V~vid~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF   83 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCEEEEEECCCHH
T ss_conf             88796999899889999999999879938997433889999870783799944543567765557526899998388589


Q ss_pred             HHHHHHHCCHHHCC-EEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             99999713544058-039971889999999769966998799998899999861
Q gi|255764510|r  178 VLYFFSLPLPAKIS-AAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       178 v~~~~~~~~~~~~~-~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      ...........+.. +...+-++.-.+.+++.|...++.+.......+.+++.+
T Consensus        84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~g~~~vi~~~~~~~~~l~~~i~~  137 (141)
T 3llv_A           84 NLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFXDKIKK  137 (141)
T ss_dssp             HHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH
T ss_conf             999999999769981999988988999999779899997799999999999851


No 12 
>>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242)
Probab=85.58  E-value=1.8  Score=21.71  Aligned_cols=85  Identities=9%  Similarity=-0.020  Sum_probs=57.2

Q ss_pred             CCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEE-EECHHHHHHHHHHCC
Q ss_conf             777538972156-----756201468984698256768875046899988999862-3783899-807899999997135
Q gi|255764510|r  114 TPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAIL-FYARSSVLYFFSLPL  186 (232)
Q Consensus       114 ~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~-f~S~~~v~~~~~~~~  186 (232)
                      .+.+++.++..+     ...+.+.+.|++.|..+.....|..-.. +....+..+. .++|+|+ +.++.....+++.+.
T Consensus        14 ~~~~~v~ii~~d~~~g~~~~~~~~~~l~~~G~~iv~~~~~~~~~~-d~~~~i~~i~~~~~d~v~~~~~~~~~~~i~~~~~   92 (119)
T 3hut_A           14 DGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNR-RFDDVIDEIEDEAPQAIYLAXAYEDAAPFLRALR   92 (119)
T ss_dssp             TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC-CCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             078169996056726589999986445406978999995599873-1158999998659999999736688999999999


Q ss_pred             HHHCCEEEEECCH
Q ss_conf             4405803997188
Q gi|255764510|r  187 PAKISAAFLCLSN  199 (232)
Q Consensus       187 ~~~~~~~~~~ig~  199 (232)
                      ..+.+..+++.+.
T Consensus        93 ~~G~~~~~~~~~~  105 (119)
T 3hut_A           93 ARGSALPVYGSSA  105 (119)
T ss_dssp             HTTCCCCEEECGG
T ss_pred             HCCCCCCEEEECC
T ss_conf             8199986564205


No 13 
>>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} (A:)
Probab=85.22  E-value=1.3  Score=22.57  Aligned_cols=67  Identities=12%  Similarity=0.130  Sum_probs=42.5

Q ss_pred             CEEEEEC--CHHH----HHHHHHHHHHCCCCEEEECCEEEECCC----------CC--CCCCCCCCCCEEEEECH-----
Q ss_conf             9389858--9688----699999999879829994210000078----------52--00164475879998484-----
Q gi|255764510|r    1 MYIVITR--PIKK----ALRTQEKIQKMGYIPVMMPLSYFIHDR----------ES--VFLAMQQSYGAIAITSS-----   57 (232)
Q Consensus         1 M~ilitR--p~~~----a~~~~~~L~~~G~~~i~~Pli~i~~~~----------~~--~~~~~~~~~d~iiftS~-----   57 (232)
                      ||||+.=  |...    ++.+++.+++.|+++-.+.+-+..+.+          ++  .....+.++|.|||.||     
T Consensus         6 mKilvi~gS~~g~t~~la~~~~~~l~~~g~~v~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~iIi~sP~y~~~   85 (200)
T 2a5l_A            6 PYILVLYYSRHGATAEXARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGN   85 (200)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTB
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECCHHHHC
T ss_conf             82899994898189999999999885449768987436621688998640320135223411164488889955605403


Q ss_pred             --HHHHHHHHHH
Q ss_conf             --6799988620
Q gi|255764510|r   58 --ESLSTLPANF   67 (232)
Q Consensus        58 --~av~~~~~~~   67 (232)
                        -.++.+....
T Consensus        86 ~p~~lK~~iD~~   97 (200)
T 2a5l_A           86 XASPLKYFLDGT   97 (200)
T ss_dssp             CCHHHHHHHHTC
T ss_pred             CCHHHHHHHHHH
T ss_conf             309999999874


No 14 
>>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} (A:)
Probab=84.69  E-value=2.5  Score=20.90  Aligned_cols=77  Identities=19%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHH---------HHHCCCC
Q ss_conf             9389858968869999999987982999421000007852001644758799984846799988---------6200136
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLP---------ANFCRHT   71 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~---------~~~~~~~   71 (232)
                      |||+|..-...-..+.+.|++.|+++...|           ...++.+||.||++-..+...-.         .......
T Consensus         1 m~i~vid~~~~~~~~~~~l~~~g~~~~~~~-----------~~~~l~~~dgivi~GG~~~~~~~~~~~~~li~~~~~~~~   69 (186)
T 2ywj_A            1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVK-----------RVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNL   69 (186)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTSEEEEEC-----------SGGGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCC
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCC
T ss_conf             989999268879999999998799399988-----------989950778689889998512211112104567750798


Q ss_pred             CEECCCHHHHHHHHHHC
Q ss_conf             30004158999976410
Q gi|255764510|r   72 PIFAIGEASACLARQKG   88 (232)
Q Consensus        72 ~~~~vg~~t~~~~~~~~   88 (232)
                      |++.+--+-.-.....+
T Consensus        70 PilGiC~G~Q~l~~~~~   86 (186)
T 2ywj_A           70 PILGTCAGMVLLSKGTG   86 (186)
T ss_dssp             CEEEETHHHHHHSSCCS
T ss_pred             CEEEEHHHHHHHHHHCC
T ss_conf             38987134677777608


No 15 
>>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} (A:122-254,A:330-346)
Probab=84.11  E-value=2.6  Score=20.75  Aligned_cols=96  Identities=6%  Similarity=0.008  Sum_probs=63.8

Q ss_pred             CCCCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCC
Q ss_conf             277753897215-----67562014689846982567688750468999889998623783899-807899999997135
Q gi|255764510|r  113 FTPQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPL  186 (232)
Q Consensus       113 ~~~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~  186 (232)
                      ..+.+++.++..     ......+.+.+++.|..|.....|..-..+......+....++|+|+ +.++.....|++.+.
T Consensus        14 ~~~~k~vaii~~d~~~G~~~~~~~~~~l~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~~d~Ii~~~~~~~~~~~~~~~~   93 (150)
T 1usg_A           14 TVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQAR   93 (150)
T ss_dssp             TTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHEEEECC
T ss_conf             24552036741652012567877655441344227888733621110136888887538746999744434432141012


Q ss_pred             HHHCCEEEEEC----CHHHHHHHHHC
Q ss_conf             44058039971----88999999976
Q gi|255764510|r  187 PAKISAAFLCL----SNNIASAIPAS  208 (232)
Q Consensus       187 ~~~~~~~~~~i----g~~tA~~~~~~  208 (232)
                      ..+.+..++..    ++...+.+.+.
T Consensus        94 ~~g~~~~~~~~~~~~~~~~~~~~g~~  119 (150)
T 1usg_A           94 SVGLKTQFMGPEGVGNASLSNIAGDA  119 (150)
T ss_dssp             HTTCCCEEEECGGGCCTTHHHHHGGG
T ss_pred             CCCCCCEEEEEEECCCCCCCCCCCCC
T ss_conf             23556303310001465312111123


No 16 
>>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} (A:)
Probab=83.17  E-value=1.4  Score=22.47  Aligned_cols=55  Identities=16%  Similarity=0.015  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHCCCCEEEECCEE--EECCC---------CC--CCCCCCCCCCEEEEECH-------HHHHHHHHH
Q ss_conf             6999999998798299942100--00078---------52--00164475879998484-------679998862
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSY--FIHDR---------ES--VFLAMQQSYGAIAITSS-------ESLSTLPAN   66 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~--i~~~~---------~~--~~~~~~~~~d~iiftS~-------~av~~~~~~   66 (232)
                      +....+.+++.|.++-.+-+-+  +.+..         ++  .....+..+|.|||.||       -.++.+...
T Consensus        21 a~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~~P~y~~~~p~~lK~~lD~   95 (199)
T 2zki_A           21 AKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFLDT   95 (199)
T ss_dssp             HHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEECHHHHHCCCEEEEECCHHHCCCCCHHHHHHHH
T ss_conf             999999997649889999806778788997157764688601247566108855883351120366235568888


No 17 
>>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} (A:264-410)
Probab=81.84  E-value=1.5  Score=22.28  Aligned_cols=46  Identities=17%  Similarity=0.173  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             6999999998798299942100000785200164475879998484
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      +..+++.|++.|.++..+.+-+..+...+....++.++|.|||.+|
T Consensus        20 a~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~i~~~d~ii~~~p   65 (147)
T 1vme_A           20 XKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVS   65 (147)
T ss_dssp             HHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEEC
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf             9999999986699249998522787862255677732998999867


No 18 
>>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} (B:)
Probab=81.49  E-value=1  Score=23.15  Aligned_cols=81  Identities=7%  Similarity=0.005  Sum_probs=50.1

Q ss_pred             CEEEEEC-CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH----HHH---------HHHH
Q ss_conf             9389858-9688699999999879829994210000078520016447587999848467----999---------8862
Q gi|255764510|r    1 MYIVITR-PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES----LST---------LPAN   66 (232)
Q Consensus         1 M~ilitR-p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a----v~~---------~~~~   66 (232)
                      |||+|.. +......+.+.|+..|+++...|.-..       ....+.++|.||++-...    ...         +...
T Consensus         1 mrI~vid~~~~~~~~~~~~l~~~g~~~~v~~~~~~-------~~~~l~~~D~iil~Gg~~~~~~~~~~~~~~~~~~i~~~   73 (201)
T 1gpw_B            1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELV-------ESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKH   73 (201)
T ss_dssp             CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEE-------CSCCSSCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHCCCCCEECEEEC-------CHHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf             98999948985899999999984762552012645-------87785105857978998277889998864618899999


Q ss_pred             HCCCCCEECCCHHHHHHHHHHC
Q ss_conf             0013630004158999976410
Q gi|255764510|r   67 FCRHTPIFAIGEASACLARQKG   88 (232)
Q Consensus        67 ~~~~~~~~~vg~~t~~~~~~~~   88 (232)
                      ..+..|++.+-.+-.-.....+
T Consensus        74 ~~~~~PilGIC~G~Q~L~~~~g   95 (201)
T 1gpw_B           74 VEDERYVVGVCLGMQLLFEESE   95 (201)
T ss_dssp             HHTTCEEEEETHHHHTTSSEET
T ss_pred             HHCCCCEEEHHHHHHHHHHHCC
T ss_conf             8608846513378786545315


No 19 
>>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} (A:)
Probab=81.43  E-value=3.3  Score=20.12  Aligned_cols=116  Identities=14%  Similarity=0.018  Sum_probs=69.9

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE------------EEECCCC-CCHHHHHHH-HCCCCEEEEECHHHHH
Q ss_conf             7775389721567562014689846982567688------------7504689-998899986-2378389980789999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC------------YYSQDIA-YPETTMKNL-LQNADAILFYARSSVL  179 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v------------Y~~~~~~-~~~~~~~~~-~~~~d~i~f~S~~~v~  179 (232)
                      ...++++++..+.....+.+.|++.|..|.-+..            |....-+ ...+.+..+ +.+.++|+++.+.-..
T Consensus         5 ~~~~~iiIiG~g~~g~~ia~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~a~~vi~~~~~d~~   84 (140)
T 3fwz_A            5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIXQLAHLECAKWLILTIPNGYE   84 (140)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCCEEEECCCCHHH
T ss_conf             67799999896889999999999779988999898899999996298389727889999950382418899987898589


Q ss_pred             HH--HHHCCHHHCCEE--EEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             99--971354405803--997188999999976996699879999889999986
Q gi|255764510|r  180 YF--FSLPLPAKISAA--FLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       180 ~~--~~~~~~~~~~~~--~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      +.  ............  ..+-++.-++.+++.|...++.+..-.-+.|...+.
T Consensus        85 n~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vv~~~~~~a~~l~~~~~  138 (140)
T 3fwz_A           85 AGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVXGEREIARTXLELLE  138 (140)
T ss_dssp             HHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC
T ss_conf             999999999978998499998999999999977999999879999999999835


No 20 
>>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} (A:125-258,A:355-392)
Probab=80.96  E-value=3.5  Score=20.03  Aligned_cols=106  Identities=5%  Similarity=-0.085  Sum_probs=67.1

Q ss_pred             HHHHHHHCCCCCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHH
Q ss_conf             98642201277753897215-----67562014689846982567688750468999889998623783899-8078999
Q gi|255764510|r  105 IIVEQKVLFTPQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSV  178 (232)
Q Consensus       105 ll~~~~~~~~~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v  178 (232)
                      .+.+......+.+++.++..     ....+.+.+.|++.|+.+.....|.....+...........++|+|+ +.++...
T Consensus         8 ala~~i~~~~g~k~Vaii~~d~~~G~~~~~~f~~~l~~~G~evv~~~~~~~~~~d~s~~i~~ik~a~pdvVv~~~~~~~~   87 (172)
T 3lkb_A            8 ALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPV   87 (172)
T ss_dssp             HHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH
T ss_conf             89999987628977999933563038999999999987498799998148997235578887653699899993662679


Q ss_pred             HHHHHHCCHHHCCEEEEE----CCHHHHHHHHHCCC
Q ss_conf             999971354405803997----18899999997699
Q gi|255764510|r  179 LYFFSLPLPAKISAAFLC----LSNNIASAIPASYK  210 (232)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~----ig~~tA~~~~~~g~  210 (232)
                      ..+++.+...+....++.    .++...+.+.+..-
T Consensus        88 ~~ilk~a~~~G~~~~~i~~~~~~~~~~~~~~g~~~e  123 (172)
T 3lkb_A           88 ANILKDAKRLGLKMRHLGAHYTGGPDLIALAGDAAE  123 (172)
T ss_dssp             HHHHHHHHHTTCCCEEEECGGGCSHHHHHHHGGGGT
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf             999999998399964999556788889988788758


No 21 
>>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} (A:140-279,A:378-419)
Probab=79.95  E-value=3.7  Score=19.82  Aligned_cols=100  Identities=8%  Similarity=0.014  Sum_probs=64.8

Q ss_pred             HHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEE--ECHHHHHH
Q ss_conf             4220127775389721567-----5620146898469825676887504689998899986237838998--07899999
Q gi|255764510|r  108 EQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILF--YARSSVLY  180 (232)
Q Consensus       108 ~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f--~S~~~v~~  180 (232)
                      .......+.+++.++..+.     ....+.+.+++.|..|.....|............+....+.|.|++  +++.....
T Consensus        17 ~~l~~~~g~kkVaii~~d~~yG~~~~~~f~~~l~~~G~~Vv~~~~~~~~~~d~~~~i~~i~~a~~d~Viv~~~~~~~~~~   96 (182)
T 3h5l_A           17 DNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQDQAL   96 (182)
T ss_dssp             HTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHH
T ss_pred             HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHH
T ss_conf             77763268878999953743778999999999997325222101255321210046666530499789997227324589


Q ss_pred             HHHHCCHHHCCEEEEEC----CHHHHHHHHH
Q ss_conf             99713544058039971----8899999997
Q gi|255764510|r  181 FFSLPLPAKISAAFLCL----SNNIASAIPA  207 (232)
Q Consensus       181 ~~~~~~~~~~~~~~~~i----g~~tA~~~~~  207 (232)
                      |++.+...+.+..++..    ++.+.+...+
T Consensus        97 ~lkq~~~~G~~~~ii~~~~~~~~~~~~~~g~  127 (182)
T 3h5l_A           97 FMNQFMTDPTNSLVYLQYGASLAAFRDIAGD  127 (182)
T ss_dssp             HHHHHTTSCCSCEEEECSGGGSHHHHHHHGG
T ss_pred             HHHHHHHCCCCCEEEEECCCCCHHHHHHHHH
T ss_conf             9999875146872999626663788865465


No 22 
>>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} (A:123-258,A:339-364)
Probab=79.77  E-value=3.8  Score=19.79  Aligned_cols=83  Identities=16%  Similarity=0.067  Sum_probs=56.1

Q ss_pred             CCCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEE-EECHHHHHHHHHHCC
Q ss_conf             77753897215-----675620146898469825676887504689998899986-23783899-807899999997135
Q gi|255764510|r  114 TPQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAIL-FYARSSVLYFFSLPL  186 (232)
Q Consensus       114 ~~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~-f~S~~~v~~~~~~~~  186 (232)
                      .+.+++.++..     ....+.+.+.+++.|..+....-|..-... ....+..+ ..++|+|+ +..+.....|++.+.
T Consensus        17 ~g~~~Vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d-~~~~v~~i~~~~pdvIv~~~~~~~~~~~~~~~~   95 (162)
T 3lop_A           17 IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAXASYPRNTAN-VGPAVDKLLAADVQAIFLGATAEPAAQFVRQYR   95 (162)
T ss_dssp             TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCC-CHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             1998899998368326999999999999769889999983798853-689999998579899999687899999999999


Q ss_pred             HHHCCEEEEEC
Q ss_conf             44058039971
Q gi|255764510|r  187 PAKISAAFLCL  197 (232)
Q Consensus       187 ~~~~~~~~~~i  197 (232)
                      ..+....+++.
T Consensus        96 ~~g~~~~~i~~  106 (162)
T 3lop_A           96 ARGGEAQLLGL  106 (162)
T ss_dssp             HTTCCCEEEEC
T ss_pred             HHCCCCEEEEE
T ss_conf             83899769997


No 23 
>>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:1-100,A:289-321)
Probab=79.46  E-value=3.4  Score=20.04  Aligned_cols=93  Identities=14%  Similarity=0.176  Sum_probs=49.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCE---ECCC
Q ss_conf             9389858968869999999987982999421000007852001644758799984846799988620013630---0041
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI---FAIG   77 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~---~~vg   77 (232)
                      ||||++.+..  ....++|++.+...+..+--..   ..+.....+.++|+++..+...+..-......+.++   +.+|
T Consensus         5 mKILi~~~~~--~~~~~~l~~~~~~~~~~~~~~~---~~eel~~~l~~adaii~~~~~~i~~~~L~~~p~LK~I~~~gvG   79 (133)
T 1sc6_A            5 IKFLLVEGVH--QKALESLRAAGYTNIEFHKGAL---DDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIG   79 (133)
T ss_dssp             CCEEECSCCC--HHHHHHHHHTTCCCEEECSSCC---CHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSC
T ss_pred             CEEEECCCCC--HHHHHHHHHCCCEEEEECCCCC---CHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCC
T ss_conf             8899918999--9999999978998999689999---9999998708976999878998599999508987499994753


Q ss_pred             HH--HHHHHHHHCCCCCCCCCCC
Q ss_conf             58--9999764101223544454
Q gi|255764510|r   78 EA--SACLARQKGFTQIFHGKDN   98 (232)
Q Consensus        78 ~~--t~~~~~~~~~~~~~~~~~~   98 (232)
                      -.  --.++.+.|......+.+.
T Consensus        80 ~D~IDl~aa~erGI~V~N~pg~~  102 (133)
T 1sc6_A           80 TNQVDLDAAAKRGIPVFNAPFGS  102 (133)
T ss_dssp             CTTBCHHHHHHTTCCEECCTTCC
T ss_pred             CCCHHCCCCCCCCEEEEECCCCC
T ss_conf             36410030103320146315757


No 24 
>>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} (A:276-325)
Probab=78.54  E-value=1.3  Score=22.61  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=23.1

Q ss_pred             CEEEEECCH-----HHHHHHHHHHHHCCCCEEEECCE
Q ss_conf             938985896-----88699999999879829994210
Q gi|255764510|r    1 MYIVITRPI-----KKALRTQEKIQKMGYIPVMMPLS   32 (232)
Q Consensus         1 M~ilitRp~-----~~a~~~~~~L~~~G~~~i~~Pli   32 (232)
                      |++|...|.     .+...+++.|+++|++++.+|+-
T Consensus        10 mNvL~ld~~~ViVe~~e~~li~~lek~Gf~vIpv~~r   46 (50)
T 1bwd_A           10 MNLLVVRPDLAVVDRRQTALIRLLEKHGMNVLPLQLT   46 (50)
T ss_dssp             GCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCT
T ss_pred             EEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHH
T ss_conf             6799977999999398899999999888999991605


No 25 
>>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} (A:351-400)
Probab=78.17  E-value=1.3  Score=22.50  Aligned_cols=32  Identities=13%  Similarity=0.297  Sum_probs=23.0

Q ss_pred             CEEEEECCH-----HHHHHHHHHHHHCCCCEEEECCE
Q ss_conf             938985896-----88699999999879829994210
Q gi|255764510|r    1 MYIVITRPI-----KKALRTQEKIQKMGYIPVMMPLS   32 (232)
Q Consensus         1 M~ilitRp~-----~~a~~~~~~L~~~G~~~i~~Pli   32 (232)
                      |++|..+|.     .+...+++.|+++|++++.+|+-
T Consensus        10 mNvL~ld~~~VvVe~~e~~li~~lek~Gf~~ip~~~r   46 (50)
T 1jdw_A           10 MNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIR   46 (50)
T ss_dssp             GCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCH
T ss_pred             EEEEEECCCEEEECCCCHHHHHHHHHCCCEEEEECCE
T ss_conf             8899976999998698799999999888989990763


No 26 
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:1-118,A:269-356)
Probab=77.86  E-value=4.3  Score=19.44  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=50.3

Q ss_pred             EEEECCHHHHHHHHHHHHHCCCC-EEEECCEEEECCCCCCC-----------C-CCCCCCCEEEEECHHHHHH------H
Q ss_conf             89858968869999999987982-99942100000785200-----------1-6447587999848467999------8
Q gi|255764510|r    3 IVITRPIKKALRTQEKIQKMGYI-PVMMPLSYFIHDRESVF-----------L-AMQQSYGAIAITSSESLST------L   63 (232)
Q Consensus         3 ilitRp~~~a~~~~~~L~~~G~~-~i~~Pli~i~~~~~~~~-----------~-~~~~~~d~iiftS~~av~~------~   63 (232)
                      |+||.....+.++.+.|.-.+-+ +..+|--++.|.+....           + .....-..||+||.+++-.      +
T Consensus        46 lvVt~d~~~A~~l~~dL~ff~~~~V~~fP~~e~lPYd~~sp~~di~s~Rl~~L~~L~~~~~~iiVts~~allq~~~~~tl  125 (206)
T 2eyq_A           46 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQSEPLPPL  125 (206)
T ss_dssp             EEEESSHHHHHHHHHHHGGGCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSEEEEEEHHHHTBSSCCCBG
T ss_pred             EEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCH
T ss_conf             99908999999999999850796310788534576666798626999999999998747999999757997257887758


Q ss_pred             HHHHCCCCCEECCCHH
Q ss_conf             8620013630004158
Q gi|255764510|r   64 PANFCRHTPIFAIGEA   79 (232)
Q Consensus        64 ~~~~~~~~~~~~vg~~   79 (232)
                      +.++..+..+...+..
T Consensus       126 fDYLp~~~~~~~~~~~  141 (206)
T 2eyq_A          126 FSYFPANTLLVNTGDL  141 (206)
T ss_dssp             GGGSCTTCEEEEESCH
T ss_pred             HHHCCCHHHCCCCHHH
T ss_conf             8747510110230678


No 27 
>>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} (A:)
Probab=74.91  E-value=5.2  Score=18.95  Aligned_cols=41  Identities=17%  Similarity=0.093  Sum_probs=17.0

Q ss_pred             HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECH
Q ss_conf             146898469825676887504689998899986237838998078
Q gi|255764510|r  131 FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYAR  175 (232)
Q Consensus       131 l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~  175 (232)
                      +.+.+.+.|..++.+.+|+.    +..+...+.+...|.|+|.||
T Consensus        20 ~~~~~~~~g~~v~~~dl~~~----dd~~~~~~~l~~AD~iV~~~P   60 (177)
T 3ha2_A           20 FFKAAIENFSNVTWHPLVAD----FNVEQEQSLLLQNDRIILEFP   60 (177)
T ss_dssp             HHHHHHTTCTTEEEEECCTT----CCHHHHHHHHHTCSEEEEEEE
T ss_pred             HHHHHHHCCCCEEEEECCCC----CCHHHHHHHHHHCCEEEEECC
T ss_conf             99999856896699826774----359999999971998999768


No 28 
>>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} (A:)
Probab=74.25  E-value=3.8  Score=19.81  Aligned_cols=58  Identities=5%  Similarity=-0.078  Sum_probs=31.2

Q ss_pred             CEEEEE--CCHHH----HHHHHHHHHHCCCCEEEECCEEEEC--CCCCC-CCCCCCCCCEEEEECHH
Q ss_conf             938985--89688----6999999998798299942100000--78520-01644758799984846
Q gi|255764510|r    1 MYIVIT--RPIKK----ALRTQEKIQKMGYIPVMMPLSYFIH--DRESV-FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilit--Rp~~~----a~~~~~~L~~~G~~~i~~Pli~i~~--~~~~~-~~~~~~~~d~iiftS~~   58 (232)
                      ||||+.  .|.+.    +..+++.+++.|.++-.+.+-+...  .++.. ....+.++|.|||-||.
T Consensus         2 mkilii~gS~~~~t~~la~~~~~~l~~~g~~v~~~~l~~~~~~~~dd~~~~~~~i~~aD~ii~~~P~   68 (192)
T 3f2v_A            2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPI   68 (192)
T ss_dssp             CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEEC
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCEEEEECCH
T ss_conf             7699998198923569999999999955998789980222589721389999999859999997774


No 29 
>>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} (A:1-225)
Probab=73.90  E-value=3  Score=20.35  Aligned_cols=31  Identities=16%  Similarity=0.100  Sum_probs=18.8

Q ss_pred             CEEEEE----CCHHHH----HHHHHHHHHCCCCEEEECC
Q ss_conf             938985----896886----9999999987982999421
Q gi|255764510|r    1 MYIVIT----RPIKKA----LRTQEKIQKMGYIPVMMPL   31 (232)
Q Consensus         1 M~ilit----Rp~~~a----~~~~~~L~~~G~~~i~~Pl   31 (232)
                      ||||+.    |+...+    ..+++.+++.|.++-.+-+
T Consensus         3 mkiLiI~gSpr~~s~t~~l~~~~~~~l~~~g~~~~~i~l   41 (225)
T 1d4a_A            3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDL   41 (225)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             659999818998656999986207899978897999987


No 30 
>>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:1-96,A:280-311)
Probab=73.30  E-value=3.6  Score=19.93  Aligned_cols=90  Identities=11%  Similarity=0.104  Sum_probs=45.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHH
Q ss_conf             938985896886999999998798299942100000785200164475879998484679-9988620013630004158
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEA   79 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~   79 (232)
                      ||||++++.+..  ..+.|++.|......+.-.   .........+.++|.|+..+..-+ +-+.....+-.-+...|.+
T Consensus         1 MKVLi~~~~~~~--~~e~L~~~~~~~~~~~~~~---~~~eel~~~i~~~d~Iii~~~~~i~~e~L~~~p~LKlI~~~g~G   75 (128)
T 2cuk_A            1 MRVLVTRTLPGK--ALDRLRERGLEVEVHRGLF---LPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVG   75 (128)
T ss_dssp             CEEEESSCCSSS--TTHHHHHTTCEEEECCSSC---CCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSC
T ss_pred             CEEEEECCCCHH--HHHHHHHCCCEEEEECCCC---CCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCEEEEECCC
T ss_conf             989990789999--9999984799899807998---99999999708981999889998599999732235602110101


Q ss_pred             ----HHHHHHHHCCCCCCCC
Q ss_conf             ----9999764101223544
Q gi|255764510|r   80 ----SACLARQKGFTQIFHG   95 (232)
Q Consensus        80 ----t~~~~~~~~~~~~~~~   95 (232)
                          =.+++.+.|......+
T Consensus        76 ~d~IDv~aa~~rGI~V~N~p   95 (128)
T 2cuk_A           76 VDHVDLEAARERGIRVTHTP   95 (128)
T ss_dssp             CTTBCHHHHHTTTCEEECCC
T ss_pred             CCCCCCCCCCCCCCCCCCCC
T ss_conf             33333332223332102211


No 31 
>>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* (A:170-304,A:441-482)
Probab=72.50  E-value=6  Score=18.61  Aligned_cols=83  Identities=12%  Similarity=0.054  Sum_probs=50.9

Q ss_pred             CCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCC--CCHHHHHHHH-CCCCEEE-EECHHHHHHHHHHC
Q ss_conf             775389721567-----5620146898469825676887504689--9988999862-3783899-80789999999713
Q gi|255764510|r  115 PQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIA--YPETTMKNLL-QNADAIL-FYARSSVLYFFSLP  185 (232)
Q Consensus       115 ~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~--~~~~~~~~~~-~~~d~i~-f~S~~~v~~~~~~~  185 (232)
                      +-++|.++..+.     ..+.|.+.+++.|+.|.....|...+..  +....+..+. .+.++|+ +.++..+..+++.+
T Consensus        16 gwk~VaII~~dd~yG~~~~~~l~~~~~~~Gi~V~~~~~~~~~~~~~~d~~~~l~~i~~s~~~vVv~~~~~~~~~~il~~a   95 (177)
T 2e4u_A           16 NWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA   95 (177)
T ss_dssp             TCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH
T ss_conf             99589999844066779999999988864834999996578875777888777776526870899972508999999999


Q ss_pred             CHHHCCEEEEEC
Q ss_conf             544058039971
Q gi|255764510|r  186 LPAKISAAFLCL  197 (232)
Q Consensus       186 ~~~~~~~~~~~i  197 (232)
                      ...+.+..++..
T Consensus        96 ~~~Gl~~~~I~s  107 (177)
T 2e4u_A           96 NRVNASFTWVAS  107 (177)
T ss_dssp             HHTTCCCEEEEC
T ss_pred             HHCCCCCCEEEE
T ss_conf             980887638997


No 32 
>>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} (A:)
Probab=72.43  E-value=6  Score=18.59  Aligned_cols=113  Identities=12%  Similarity=0.033  Sum_probs=59.6

Q ss_pred             CEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEE----------------ECC-CCCCHHHHHHH-HCCCCEEEEECHHHH
Q ss_conf             538972156756201468984698256768875----------------046-89998899986-237838998078999
Q gi|255764510|r  117 KPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYY----------------SQD-IAYPETTMKNL-LQNADAILFYARSSV  178 (232)
Q Consensus       117 ~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~----------------~~~-~~~~~~~~~~~-~~~~d~i~f~S~~~v  178 (232)
                      ++++++..+.....+.+.|.+.|..|.-+..-.                ... .......+..+ +.+.|.++.+.+.-.
T Consensus         4 ~~viIiG~G~~G~~ia~~L~~~g~~v~vid~d~~~~~~~~~~~~~~~~~~~~gD~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH
T ss_conf             87999899989999999999769987999888377899999741389779995379989996368352999999848859


Q ss_pred             HHHHH--HCCHHHC--CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             99997--1354405--803997188999999976996699879999889999986
Q gi|255764510|r  179 LYFFS--LPLPAKI--SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       179 ~~~~~--~~~~~~~--~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      ..+.-  .......  .+...+-.+.-+..+++.|...+..+.....+.|...+.
T Consensus        84 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~vi~~~~~~~~~l~~~~~  138 (153)
T 1id1_A           84 DNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLN  138 (153)
T ss_dssp             HHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC
T ss_conf             9999999999978998399997899999999978999999989999999999837


No 33 
>>1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} (A:)
Probab=71.33  E-value=6.4  Score=18.43  Aligned_cols=31  Identities=13%  Similarity=0.191  Sum_probs=19.0

Q ss_pred             CEEEEE----CCHHH----HHHHHHHHHHCCCCEEEECC
Q ss_conf             938985----89688----69999999987982999421
Q gi|255764510|r    1 MYIVIT----RPIKK----ALRTQEKIQKMGYIPVMMPL   31 (232)
Q Consensus         1 M~ilit----Rp~~~----a~~~~~~L~~~G~~~i~~Pl   31 (232)
                      ||||+.    |+...    +..+.+.+++.|.++-.+-+
T Consensus         3 mkil~I~gS~r~~s~t~~l~~~~~~~l~~~g~ev~~~~L   41 (230)
T 1sg0_A            3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL   41 (230)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             879999858998568999999999999967997999987


No 34 
>>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} (A:)
Probab=71.29  E-value=6.4  Score=18.43  Aligned_cols=77  Identities=10%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH-HHHHH-----------HHHHHC
Q ss_conf             938985896886999999998798299942100000785200164475879998484-67999-----------886200
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS-ESLST-----------LPANFC   68 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~-~av~~-----------~~~~~~   68 (232)
                      |||+|..-...-..+.+.|++.|+++..+|.           ..++.++|.|+++-. ..+..           +.....
T Consensus         2 ~~I~ii~~~~~~~~~~~~l~~~G~~v~~~~~-----------~~~l~~~Dgiii~GGp~~~~~~~~~~~~~~~~i~~~~~   70 (196)
T 2nv0_A            2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR-----------PEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAA   70 (196)
T ss_dssp             CEEEEECSSSCCHHHHHHHHHTTCEEEEECS-----------GGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEECC-----------HHHHHHCCEEEECCCCCHHHHHHHHHCCCCCHHHHHCC
T ss_conf             3999997078199999999987994999899-----------89982088799869872799997532200102231024


Q ss_pred             CCCCEECCCHHHHHHHHHHC
Q ss_conf             13630004158999976410
Q gi|255764510|r   69 RHTPIFAIGEASACLARQKG   88 (232)
Q Consensus        69 ~~~~~~~vg~~t~~~~~~~~   88 (232)
                      ...|++.+-.+-.-.....+
T Consensus        71 ~~~PilGiC~G~Q~l~~~~g   90 (196)
T 2nv0_A           71 QGKPMFGTCAGLIILAKEIA   90 (196)
T ss_dssp             TTCCEEEETHHHHHHSBCCC
T ss_pred             CCCEEEEECCCHHHHHHCCC
T ss_conf             68546874467598863025


No 35 
>>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} (A:1-17,A:159-274)
Probab=71.08  E-value=6.4  Score=18.40  Aligned_cols=46  Identities=11%  Similarity=0.121  Sum_probs=37.9

Q ss_pred             CHHHCCEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
Q ss_conf             544058039971--8899999997699669987999988999998614
Q gi|255764510|r  186 LPAKISAAFLCL--SNNIASAIPASYKNVVTVACFPKETSLLKLLPLR  231 (232)
Q Consensus       186 ~~~~~~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~  231 (232)
                      ...+.+..+++|  |..-.++++.++|.-..+..+||.+++..+|..+
T Consensus        84 ~RfG~k~~fvvIGDG~eEe~AAk~l~~PFwrI~~~~Dl~~l~~aL~l~  131 (133)
T 3geb_A           84 QRFGRKAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELE  131 (133)
T ss_dssp             HHHCTTSEEEEEESSHHHHHHHHHTTCCEEECCSHHHHHHHHHHHHHE
T ss_pred             HHHCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf             986897469997887778999985289858813780399987755313


No 36 
>>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:1-91,A:282-324)
Probab=70.72  E-value=6.6  Score=18.35  Aligned_cols=86  Identities=7%  Similarity=-0.078  Sum_probs=46.5

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf             93898589688699999999879829994210000078520016447587999848467999886200136300041589
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEAS   80 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t   80 (232)
                      ||||++++.  .....+.|++.+......+       +.+.......++|.|+..+..--+.+.....+-.-+.+.|.++
T Consensus         2 mKILv~~~~--~~~~~e~L~~~~~~v~~~~-------~~del~e~i~~aDvIi~~~~~i~~elL~~~p~LK~Ia~~gaG~   72 (134)
T 3evt_A            2 SLVLMAQAT--KPEQLQQLQTTYPDWTFKD-------AAAVTAADYDQIEVMYGNHPLLKTILARPTNQLKFVQVISAGV   72 (134)
T ss_dssp             CEEEECSCC--CHHHHHHHHHHCTTCEEEE-------TTSCCTTTGGGEEEEESCCTHHHHHHHSTTCCCCEEECSSSCC
T ss_pred             CEEEECCCC--CHHHHHHHHHHCCCCEECC-------CHHCCCCCCCEEEEEEECCCCCHHHHHCCCCCCEEEEECCCCC
T ss_conf             789989989--9899999884689854676-------0212303678049998289888999953547772999858767


Q ss_pred             ----HHHHHHHCCCCCCCC
Q ss_conf             ----999764101223544
Q gi|255764510|r   81 ----ACLARQKGFTQIFHG   95 (232)
Q Consensus        81 ----~~~~~~~~~~~~~~~   95 (232)
                          ..++.+.|......+
T Consensus        73 DnIDl~aa~erGI~VtNtP   91 (134)
T 3evt_A           73 DYLPLKALQAAGVVVANTS   91 (134)
T ss_dssp             TTSCHHHHHHTTCEEECCT
T ss_pred             CCCCHHHHHHCCEEEEECC
T ss_conf             8527798986790899428


No 37 
>>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} (A:)
Probab=70.56  E-value=6.6  Score=18.33  Aligned_cols=149  Identities=10%  Similarity=-0.040  Sum_probs=84.5

Q ss_pred             ECCCHHHHHHHHHHCCCCCCC--CCC-CHHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE
Q ss_conf             004158999976410122354--445-456789---99864220127775389721567562014689846982567688
Q gi|255764510|r   74 FAIGEASACLARQKGFTQIFH--GKD-NSINLA---KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC  147 (232)
Q Consensus        74 ~~vg~~t~~~~~~~~~~~~~~--~~~-~~~~~~---~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v  147 (232)
                      .++|-++..++..........  ... ......   ..+. ......++++|.++..    .-+...+++.+.   ++.+
T Consensus        94 ralgiAalNA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~kV~vVG~----~P~i~~~~~~~~---~l~V  165 (270)
T 2h1q_A           94 ASIGLAAINAYYNNPQVAREHGVIFSDAKRVEDRXNDPFI-XSQNEVKGKKVGVVGH----FPHLESLLEPIC---DLSI  165 (270)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHTTCCCCCC-------CCHHH-HTTTTTTTSEEEEESC----CTTHHHHHTTTS---EEEE
T ss_pred             HHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHCCCCEEEEECC----CCCHHHHHHCCC---CEEE
T ss_conf             9999999997654410000013554554310102478245-5422037998999926----735699985589---5799


Q ss_pred             EEECCCCC--CHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC-EEEEECCHHHH--HHHHHCCCCEEEECCCCCHH
Q ss_conf             75046899--988999862378389980789999999713544058-03997188999--99997699669987999988
Q gi|255764510|r  148 YYSQDIAY--PETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS-AAFLCLSNNIA--SAIPASYKNVVTVACFPKET  222 (232)
Q Consensus       148 Y~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~-~~~~~ig~~tA--~~~~~~g~~~~~va~~p~~~  222 (232)
                      .++.|...  ..+.....+...|+|++|.+.-+..=++.+.....+ ...+-+||++.  -.+-..|...+.-..-.|.+
T Consensus       166 ~E~~p~~g~~~~~~~~~lLp~aD~V~iTGsTlvN~Tl~~lL~~a~~a~~vvl~GPS~~~~p~l~~~Gv~~lag~~v~d~~  245 (270)
T 2h1q_A          166 LEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFXVKDNA  245 (270)
T ss_dssp             EESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHH
T ss_pred             EECCCCCCCCCHHHHHHHHHCCCEEEEEEEHHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCEEEEEEECCHH
T ss_conf             97788878887478787630188999985145517899999737667779998998645799894297768788872899


Q ss_pred             HHHHHHHH
Q ss_conf             99999861
Q gi|255764510|r  223 SLLKLLPL  230 (232)
Q Consensus       223 ~ll~al~~  230 (232)
                      .++++|+.
T Consensus       246 ~~~~~i~~  253 (270)
T 2h1q_A          246 RAFRIVAG  253 (270)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHC
T ss_conf             99999972


No 38 
>>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:1-90,A:258-287)
Probab=70.53  E-value=5.2  Score=18.95  Aligned_cols=56  Identities=13%  Similarity=-0.035  Sum_probs=34.4

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH
Q ss_conf             9389858968869999999987982999421000007852001644758799984846799988620
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF   67 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~   67 (232)
                      ||||+|.|.+...+   .|++ .+++...|.-       ......+.++|.|+..+..-........
T Consensus         1 MKILi~~~~~~~~~---~L~~-~~eV~~~~~~-------eel~~~l~d~diIi~~~~~~~~~~l~~a   56 (120)
T 2o4c_A            1 MRILADENIPVVDA---FFAD-QGSIRRLPGR-------AIDRAALAEVDVLLVRSVTEVSRAALAG   56 (120)
T ss_dssp             CEEEEETTCTTHHH---HHGG-GSEEEEECGG-------GCSTTTTTTCSEEEECTTSCBCHHHHTT
T ss_pred             CEEEECCCCHHHHH---HHCC-CCEEEECCCC-------CCCHHHCCCCEEEEECCCCCCCHHHHCC
T ss_conf             97998789867999---8503-8959986898-------6898881896599987888888999758


No 39 
>>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} (A:)
Probab=70.05  E-value=6.6  Score=18.34  Aligned_cols=58  Identities=14%  Similarity=-0.084  Sum_probs=35.7

Q ss_pred             CEEEEE----CCHHHHHHHHHHHHH---CCCCEEEECCEEEECCCC--------CC--CCCCCCCCCEEEEECHH
Q ss_conf             938985----896886999999998---798299942100000785--------20--01644758799984846
Q gi|255764510|r    1 MYIVIT----RPIKKALRTQEKIQK---MGYIPVMMPLSYFIHDRE--------SV--FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~~~~L~~---~G~~~i~~Pli~i~~~~~--------~~--~~~~~~~~d~iiftS~~   58 (232)
                      ||||+.    |+...+.++++.+.+   .|+++..+-+-++-....        +.  ....+.++|.|||.||.
T Consensus         3 mkil~i~gSpr~~s~s~~l~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI~~~P~   77 (192)
T 3fvw_A            3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPV   77 (192)
T ss_dssp             CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCC
T ss_conf             879999899999887999999999983799879997378899999520114789999999987428935996644


No 40 
>>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} (A:)
Probab=69.81  E-value=3.6  Score=19.93  Aligned_cols=57  Identities=12%  Similarity=0.043  Sum_probs=34.7

Q ss_pred             CEEEEE--CCHHHHH----HHHHHHHHCCCCEEEECCEEEECC----------------CCCC--CCCCCCCCCEEEEEC
Q ss_conf             938985--8968869----999999987982999421000007----------------8520--016447587999848
Q gi|255764510|r    1 MYIVIT--RPIKKAL----RTQEKIQKMGYIPVMMPLSYFIHD----------------RESV--FLAMQQSYGAIAITS   56 (232)
Q Consensus         1 M~ilit--Rp~~~a~----~~~~~L~~~G~~~i~~Pli~i~~~----------------~~~~--~~~~~~~~d~iiftS   56 (232)
                      ||||+.  -|...+.    .+++.|++.|.++-.+.+-+..+.                .++.  ....+.++|.|||-|
T Consensus         7 mkIlii~gS~~g~t~~l~~~~~~~l~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~iii~s   86 (211)
T 1ydg_A            7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS   86 (211)
T ss_dssp             CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEC
T ss_conf             78999997998189999999999987569779999866767642022466776078764551566566676388659823


Q ss_pred             H
Q ss_conf             4
Q gi|255764510|r   57 S   57 (232)
Q Consensus        57 ~   57 (232)
                      |
T Consensus        87 P   87 (211)
T 1ydg_A           87 P   87 (211)
T ss_dssp             E
T ss_pred             C
T ss_conf             5


No 41 
>>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} (A:)
Probab=69.70  E-value=6.9  Score=18.22  Aligned_cols=83  Identities=18%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE-CHHHHHHHHH------HHCCCCC
Q ss_conf             9389858968-869999999987982999421000007852001644758799984-8467999886------2001363
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT-SSESLSTLPA------NFCRHTP   72 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift-S~~av~~~~~------~~~~~~~   72 (232)
                      |+|+|..-.. ....+.+.|++.|+++...|.-.      .....+...+|.++++ ++..+.-...      ...++.|
T Consensus        25 ~~i~iid~~~~~~~~i~~~l~~~g~~~~i~~~~~------~~~~~~~~~~dGiii~Gg~~~~~d~~~~~~i~~~~~~~~P   98 (218)
T 2vpi_A           25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLET------PAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKP   98 (218)
T ss_dssp             TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTC------CHHHHHHHTCSEEEEEC---------CCCCCGGGGTSSCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC------CHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf             9899998984598999999774595699988999------9999985199889995899885434464312666625973


Q ss_pred             EECCCHHHHHHHHHHCC
Q ss_conf             00041589999764101
Q gi|255764510|r   73 IFAIGEASACLARQKGF   89 (232)
Q Consensus        73 ~~~vg~~t~~~~~~~~~   89 (232)
                      ++.+--+-.-.....|.
T Consensus        99 iLGIC~G~Qlla~alGg  115 (218)
T 2vpi_A           99 VLGICYGMQMMNKVFGG  115 (218)
T ss_dssp             EEEETHHHHHHHHHTTC
T ss_pred             EEEEHHHHHHHHHHCCC
T ss_conf             78751578999876151


No 42 
>>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} (H:)
Probab=67.85  E-value=7.6  Score=17.99  Aligned_cols=49  Identities=4%  Similarity=0.046  Sum_probs=36.3

Q ss_pred             CEEEEECCH-HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH
Q ss_conf             938985896-886999999998798299942100000785200164475879998484679
Q gi|255764510|r    1 MYIVITRPI-KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL   60 (232)
Q Consensus         1 M~ilitRp~-~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av   60 (232)
                      |||+|.+-. ..-..+...|++.|+++...|           ...++.++|.+|++-....
T Consensus         3 ~ri~vi~~~~~~~~~~~~~l~~~g~~v~~~~-----------~~~~l~~~dgvilpGg~~~   52 (200)
T 1ka9_H            3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQ-----------DPKAHEEADLLVLPGQGHF   52 (200)
T ss_dssp             CEEEEECSSCSCHHHHHHHHHHTTCEEEEES-----------STTSCSSCSEEEECCCSCH
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCCEEEEC-----------CHHHHHHCCEEEECCCCCH
T ss_conf             7799997898589999999998799699987-----------9899840898999699847


No 43 
>>3klb_A Putative flavoprotein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} (A:)
Probab=65.40  E-value=5.6  Score=18.78  Aligned_cols=25  Identities=8%  Similarity=-0.099  Sum_probs=12.1

Q ss_pred             CCCEEEEECH-------HHHHHHHHHCCHHHC
Q ss_conf             7838998078-------999999971354405
Q gi|255764510|r  166 NADAILFYAR-------SSVLYFFSLPLPAKI  190 (232)
Q Consensus       166 ~~d~i~f~S~-------~~v~~~~~~~~~~~~  190 (232)
                      ..|.|+|.||       ..+..|++.+...+.
T Consensus        78 ~aD~iI~~sP~y~~~~~~~lk~~ld~~~~~gK  109 (162)
T 3klb_A           78 KYEVLFVGFPVWWYIAPTIINTFLESYDFAGK  109 (162)
T ss_dssp             GCSEEEEEEECBTTBCCHHHHHHHHTSCCTTC
T ss_pred             HCCEEEEECCCCCCCCCHHHHHHHHHCCCCCC
T ss_conf             58877984234357743999999984798999


No 44 
>>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} (A:41-219)
Probab=61.46  E-value=10  Score=17.25  Aligned_cols=50  Identities=10%  Similarity=0.124  Sum_probs=28.4

Q ss_pred             CEEEEECC--HHHHHHHHHHHH---HCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             93898589--688699999999---8798299942100000785200164475879998484
Q gi|255764510|r    1 MYIVITRP--IKKALRTQEKIQ---KMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus         1 M~ilitRp--~~~a~~~~~~L~---~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      |||+|.--  .....+.|..+.   +.|+++...++-+..       ..++.+||.++|-|+
T Consensus         1 Mki~I~Y~S~tGnTe~~A~~ia~~l~~g~~v~l~~~~~~~-------~~~l~~~d~ii~~~~   55 (179)
T 3hr4_A            1 VRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYR-------LSCLEEERLLLVVTS   55 (179)
T ss_dssp             CEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCC-------GGGGGTCSEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEHHHCC-------HHHHHCCCEEEEEEE
T ss_conf             6289999899966999999999998569996795144358-------445311460599962


No 45 
>>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:)
Probab=60.96  E-value=10  Score=17.20  Aligned_cols=99  Identities=10%  Similarity=0.172  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCC----CCCCHHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCHH
Q ss_conf             775389721567----562014689846982567688750468-999889998623783899-80789999999713544
Q gi|255764510|r  115 PQKPLIYLGGKP----RNFHFEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLPA  188 (232)
Q Consensus       115 ~~~~vl~~~g~~----~~~~l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~~  188 (232)
                      ..+++.++....    ........|++.|++|.-+......-. ......+.++-..+|.++ |..+..+...++.+...
T Consensus        21 ~p~~iAVvGas~~~~~~g~~v~~~l~~~G~~V~~V~p~~~~i~g~~~~~sl~elp~~~Dlv~i~~p~~~~~~i~~e~~~~  100 (144)
T 2d59_A           21 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK  100 (144)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHC
T ss_conf             68949999115999982599999999789989998973330079745664201467650799985889999999999972


Q ss_pred             HCCEEEE---ECCHHHHHHHHHCCCCEE
Q ss_conf             0580399---718899999997699669
Q gi|255764510|r  189 KISAAFL---CLSNNIASAIPASYKNVV  213 (232)
Q Consensus       189 ~~~~~~~---~ig~~tA~~~~~~g~~~~  213 (232)
                      +....++   .++....+.+++.|...+
T Consensus       101 g~k~v~~~~~g~~e~~~~~a~~~gi~vv  128 (144)
T 2d59_A          101 GAKVVWFQYNTYNREASKKADEAGLIIV  128 (144)
T ss_dssp             TCSEEEECTTCCCHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf             9999999426449999999999699889


No 46 
>>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} (A:)
Probab=60.09  E-value=9.5  Score=17.40  Aligned_cols=19  Identities=16%  Similarity=-0.045  Sum_probs=8.4

Q ss_pred             HHHHHHHCCCEEEEEEEEE
Q ss_conf             1468984698256768875
Q gi|255764510|r  131 FEDYLIEHKIPLRVIDCYY  149 (232)
Q Consensus       131 l~~~L~~~g~~v~~~~vY~  149 (232)
                      +.+.|...|..++.+.+|+
T Consensus        57 ~~~~l~~~g~~v~~idL~~   75 (247)
T 2q62_A           57 ARRLLEFFGAEVKVFDPSG   75 (247)
T ss_dssp             HHHHHHHTTCEEEECCCTT
T ss_pred             HHHHCCCCCCEEEEEEHHH
T ss_conf             9986411671699976665


No 47 
>>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} (A:250-398)
Probab=59.69  E-value=7  Score=18.20  Aligned_cols=41  Identities=10%  Similarity=0.017  Sum_probs=15.4

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             99999998798299942100000785200164475879998484
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      .+++.|++.|+++..+.+   ...+.......+.++|.|||.||
T Consensus        22 ~~~~~l~~~g~~v~~~~~---~~~~~~~~~~~~~~~d~iii~sP   62 (149)
T 1ycg_A           22 ALMDGLVAGGCEVKLFKL---SVSDRNDVIKEILDARAVLVGSP   62 (149)
T ss_dssp             HHHHHHHHTTCEEEEEEG---GGSCHHHHHHHHHHCSEEEEECC
T ss_pred             HHHHHHHHCCCEEEEEEC---CCCCCHHHHHHHHCCCEEEEECC
T ss_conf             999987645955999987---55681554430320676899458


No 48 
>>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} (A:163-244)
Probab=59.56  E-value=8.1  Score=17.82  Aligned_cols=19  Identities=16%  Similarity=-0.045  Sum_probs=9.3

Q ss_pred             CCHHHHHHHHHCCCCEEEE
Q ss_conf             1889999999769966998
Q gi|255764510|r  197 LSNNIASAIPASYKNVVTV  215 (232)
Q Consensus       197 ig~~tA~~~~~~g~~~~~v  215 (232)
                      -.++|++.+++.|++++.+
T Consensus        56 ~~~~~~~~L~~~G~~Vi~i   74 (82)
T 1h70_A           56 GYPRTREKIARLGYRVIEV   74 (82)
T ss_dssp             SCHHHHHHHHTTTCEEEEE
T ss_pred             CCHHHHHHHHHCCCEEEEE
T ss_conf             8899999999889989995


No 49 
>>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} (A:)
Probab=58.65  E-value=6.5  Score=18.37  Aligned_cols=167  Identities=13%  Similarity=0.073  Sum_probs=84.5

Q ss_pred             CEEEEECCHHHHH-HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE--CC
Q ss_conf             9389858968869-99999998798299942100000785200164475879998484679-99886200136300--04
Q gi|255764510|r    1 MYIVITRPIKKAL-RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF--AI   76 (232)
Q Consensus         1 M~ilitRp~~~a~-~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~--~v   76 (232)
                      .+||++.+.+... .+...++..++.....+       ..+.....+.++|.++..+.--+ +.+.....+-.-+.  ..
T Consensus         1 ~~Vl~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~l~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~a   73 (334)
T 2pi1_A            1 XNVLFTSVPQEDVPFYQEALKDLSLKIYTTD-------VSKVPENELKKAELISVFVYDKLTEELLSKXPRLKLIHTRSV   73 (334)
T ss_dssp             CEEEECSCCTTHHHHHHHHTTTSEEEECSSC-------GGGSCHHHHHHCSEEEECTTSCBCHHHHTTCTTCCEEEESSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHCCEEEEECC-------CCCCCHHHHCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCC
T ss_conf             9799967871337679998864783799567-------453888785478899995789889999944998619998897


Q ss_pred             CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------------HHCCCCCCEEEEECCCCCC
Q ss_conf             158--999976410122354445456789998642--------------------------2012777538972156756
Q gi|255764510|r   77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------------KVLFTPQKPLIYLGGKPRN  128 (232)
Q Consensus        77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------------~~~~~~~~~vl~~~g~~~~  128 (232)
                      |-.  -..++.+.|......+...+...++...-.                          ......++++.++.-....
T Consensus        74 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~vgiiG~G~iG  153 (334)
T 2pi1_A           74 GFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIG  153 (334)
T ss_dssp             CCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBCCGGGSEEEEECCSHHH
T ss_pred             CCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf             57842303653388798438986527678887654441012212111133222222223332320144049999255654


Q ss_pred             CCHHHHHHHCCCEEEEEEEEEECCCC------CCHHHHHHHHCCCCEEEEECHHH
Q ss_conf             20146898469825676887504689------99889998623783899807899
Q gi|255764510|r  129 FHFEDYLIEHKIPLRVIDCYYSQDIA------YPETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       129 ~~l~~~L~~~g~~v~~~~vY~~~~~~------~~~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      ..+.+.|+..|..|..   |.+.+..      .....+.+++.+.|+|++.-|.+
T Consensus       154 ~~~a~~l~~fg~~v~~---~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~lplt  205 (334)
T 2pi1_A          154 SRVAXYGLAFGXKVLC---YDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYT  205 (334)
T ss_dssp             HHHHHHHHHTTCEEEE---ECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred             CCCCCCCCCCCCCCCC---CCCCCCHHHHHCCCCCCCHHHHHHHCCEEEECCCCC
T ss_conf             4332112222223322---366540235542763579999984489789817898


No 50 
>>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} (A:)
Probab=58.28  E-value=5.8  Score=18.69  Aligned_cols=98  Identities=11%  Similarity=0.155  Sum_probs=45.1

Q ss_pred             CCEEEEECCCC----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCHHHC
Q ss_conf             75389721567----562014689846982567688750468999889998623783899-8078999999971354405
Q gi|255764510|r  116 QKPLIYLGGKP----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLPAKI  190 (232)
Q Consensus       116 ~~~vl~~~g~~----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~~~~  190 (232)
                      .+++.++....    ....+.+.|.+.|+.|.-+.-....-.......-......+|.++ |..++.+...++.+...+.
T Consensus         4 ~k~iAViGaS~~~~~~g~~v~~~l~~~g~~V~pVnp~~~~v~G~~~y~~l~~~~~~D~v~i~~~~~~~~~~~~e~~~~gi   83 (122)
T 3ff4_A            4 XKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLKP   83 (122)
T ss_dssp             CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHCC
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHCCC
T ss_conf             66399998769999809999999997899899985657600005899734346898799999688998999999985399


Q ss_pred             CEEEE---ECCHHHHHHHHHCCCCEE
Q ss_conf             80399---718899999997699669
Q gi|255764510|r  191 SAAFL---CLSNNIASAIPASYKNVV  213 (232)
Q Consensus       191 ~~~~~---~ig~~tA~~~~~~g~~~~  213 (232)
                      +..++   .+++...+.+++.|.+.+
T Consensus        84 k~v~~~~~~~~e~~~~~a~~~gi~ii  109 (122)
T 3ff4_A           84 KRVIFNPGTENEELEEILSENGIEPV  109 (122)
T ss_dssp             SEEEECTTCCCHHHHHHHHHTTCEEE
T ss_pred             CEEEEECCCCCHHHHHHHHHCCCEEE
T ss_conf             99999359879999999999699799


No 51 
>>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} (A:)
Probab=57.93  E-value=12  Score=16.88  Aligned_cols=64  Identities=14%  Similarity=0.020  Sum_probs=33.5

Q ss_pred             EEEEECCH---HHHHHHHHHHHHCCCCEEEECCEEEECCCCCC-C--CCCCCCCCEEEE--ECHHHHHHHHHHHC
Q ss_conf             38985896---88699999999879829994210000078520-0--164475879998--48467999886200
Q gi|255764510|r    2 YIVITRPI---KKALRTQEKIQKMGYIPVMMPLSYFIHDRESV-F--LAMQQSYGAIAI--TSSESLSTLPANFC   68 (232)
Q Consensus         2 ~ilitRp~---~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~--~~~~~~~d~iif--tS~~av~~~~~~~~   68 (232)
                      .+|||=-.   .=+..++..|.+.|+.++..-.   .+..... .  ...-.+...+..  ++...++.+.....
T Consensus        11 ~vlITGas~~~GIG~aiA~~la~~G~~Vv~~~r---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (265)
T 1qsg_A           11 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQ---NDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG   82 (265)
T ss_dssp             EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEES---STTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf             799989998501899999999986999999958---878999999998626971799821322478999999998


No 52 
>>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} (A:255-414)
Probab=57.87  E-value=8.9  Score=17.55  Aligned_cols=41  Identities=15%  Similarity=0.181  Sum_probs=16.7

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             99999998798299942100000785200164475879998484
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      .+++.|++.|+++....+-+   .+.......+.++|.|||.||
T Consensus        22 ~i~~~l~~~g~~v~~~~~~~---~~~~~~~~~~~~~d~ii~~tP   62 (160)
T 2q9u_A           22 ALLDGARSTGCETVLLEMTS---SDITKVALHTYDSGAVAFASP   62 (160)
T ss_dssp             HHHHHHHHTTCEEEEEEGGG---CCHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHCCCEEEEEECCC---CCHHHHHHHHHHCCEEEEECC
T ss_conf             99998875697599996667---775677999864896999578


No 53 
>>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375)
Probab=56.82  E-value=12  Score=16.77  Aligned_cols=79  Identities=8%  Similarity=-0.072  Sum_probs=51.7

Q ss_pred             CCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCH
Q ss_conf             777538972156-----7562014689846982567688750468999889998623783899-8078999999971354
Q gi|255764510|r  114 TPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLP  187 (232)
Q Consensus       114 ~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~  187 (232)
                      .+.+++.++..+     .....+.+.+++.|..|.....|.....+.........-.+.|+|+ ..++.....+++.+..
T Consensus        16 ~g~k~Vaii~~D~ayG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~tDfss~l~~i~~s~advVil~~~g~d~~~~ikqa~e   95 (191)
T 3i09_A           16 QGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKE   95 (191)
T ss_dssp             TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHH
T ss_pred             HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             13778999516871878999999998874496488889606756541379988762599889990577068999999998


Q ss_pred             HHCCE
Q ss_conf             40580
Q gi|255764510|r  188 AKISA  192 (232)
Q Consensus       188 ~~~~~  192 (232)
                      .+.+.
T Consensus        96 ~Gl~~  100 (191)
T 3i09_A           96 FGITK  100 (191)
T ss_dssp             TTGGG
T ss_pred             CCCCC
T ss_conf             09887


No 54 
>>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} (A:)
Probab=55.80  E-value=13  Score=16.67  Aligned_cols=85  Identities=11%  Similarity=0.112  Sum_probs=52.3

Q ss_pred             CEEEEECCHH--HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH----------HHH----HH
Q ss_conf             9389858968--8699999999879829994210000078520016447587999848467----------999----88
Q gi|255764510|r    1 MYIVITRPIK--KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES----------LST----LP   64 (232)
Q Consensus         1 M~ilitRp~~--~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a----------v~~----~~   64 (232)
                      |+|+|.....  ........|++.|+++...|.......     ...+.+||.||++-..+          +..    +.
T Consensus        13 ~~i~vid~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~-----~~~~~~~Dgiii~Gg~~~~~~~~~~~~~~~~~~~i~   87 (239)
T 1o1y_A           13 VRVLAIRHVEIEDLGXXEDIFREKNWSFDYLDTPKGEKL-----ERPLEEYSLVVLLGGYXGAYEEEKYPFLKYEFQLIE   87 (239)
T ss_dssp             CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCC-----SSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC-----CCCHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             079999799988976999999978897999989898778-----767444798998899998777767832299999999


Q ss_pred             HHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             62001363000415899997641012
Q gi|255764510|r   65 ANFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        65 ~~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      .......|++.+.-+........|..
T Consensus        88 ~~~~~~~PilGIC~G~QlLa~~~g~~  113 (239)
T 1o1y_A           88 EILKKEIPFLGIXLGSQXLAKVLGAS  113 (239)
T ss_dssp             HHHHHTCCEEEETHHHHHHHHHTTCC
T ss_pred             HHHHCCCCEEEECHHHHHHHHHHCCE
T ss_conf             99976999999828999999870982


No 55 
>>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:1-125)
Probab=54.79  E-value=13  Score=16.57  Aligned_cols=90  Identities=7%  Similarity=-0.115  Sum_probs=47.5

Q ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC
Q ss_conf             12777538972156756201468984698256768875046899988999862378389980789999999713544058
Q gi|255764510|r  112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS  191 (232)
Q Consensus       112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~  191 (232)
                      ...+.++|+++.+....--+...+++.|+.+..  +|.. +  ..+.     ..-.|...+.|..-.+...+.....+.+
T Consensus         7 ~~~~~kkilIiG~G~~~~~l~~~a~~~g~~~~~--~~~~-~--~~~~-----~~~ad~~~~~~~~d~~~i~~~a~~~~vd   76 (125)
T 1kjq_A            7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIA--VDRY-A--DAPA-----MHVAHRSHVINMLDGDALRRVVELEKPH   76 (125)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEE--EESS-T--TCGG-----GGGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE--EECC-C--CCCH-----HHHCCEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             999998999989789999999999987998999--9799-9--9826-----7625506871788999999999983999


Q ss_pred             EEEEE---CCHHHHHHHHHCCCC
Q ss_conf             03997---188999999976996
Q gi|255764510|r  192 AAFLC---LSNNIASAIPASYKN  211 (232)
Q Consensus       192 ~~~~~---ig~~tA~~~~~~g~~  211 (232)
                      ....-   ++..++..+.+.|..
T Consensus        77 ~v~~~~~~~~~~~~~~l~~~gi~   99 (125)
T 1kjq_A           77 YIVPEIEAIATDMLIQLEEEGLN   99 (125)
T ss_dssp             EEEECSSCSCHHHHHHHHHTTCE
T ss_pred             EEECCCCCHHHHHHHHHHHCCCC
T ss_conf             99827762748999999975983


No 56 
>>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} (A:)
Probab=54.62  E-value=13  Score=16.55  Aligned_cols=84  Identities=17%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             CEEEEECCHHH-HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC-HHHH------HHHHHHHCCCCC
Q ss_conf             93898589688-699999999879829994210000078520016447587999848-4679------998862001363
Q gi|255764510|r    1 MYIVITRPIKK-ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS-SESL------STLPANFCRHTP   72 (232)
Q Consensus         1 M~ilitRp~~~-a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS-~~av------~~~~~~~~~~~~   72 (232)
                      |||+|.--... ...+.+.|++.|+++...|.-+      .........+|.++++- +..+      ........+..|
T Consensus         1 M~i~iid~g~~~~~~l~~~l~~~g~~~~v~~~~~------~~~~~~~~~~~~i~~~gg~~~~~d~~~~~~i~~~~~~~~P   74 (189)
T 1wl8_A            1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT------PLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNVP   74 (189)
T ss_dssp             CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC------CHHHHHHTCCSEEEECCCSCTTCCTTHHHHHHTGGGTCSC
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC------CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf             9899997988089999999986798599985999------8899865325431123576321245431000000035743


Q ss_pred             EECCCHHHHHHHHHHCCC
Q ss_conf             000415899997641012
Q gi|255764510|r   73 IFAIGEASACLARQKGFT   90 (232)
Q Consensus        73 ~~~vg~~t~~~~~~~~~~   90 (232)
                      ++.+--+-.-.....|..
T Consensus        75 iLGIC~G~Qll~~alGg~   92 (189)
T 1wl8_A           75 ILGICLGHQLIAKFFGGK   92 (189)
T ss_dssp             EEEETHHHHHHHHHHTCE
T ss_pred             EEEEHHHHHHHHEECCCC
T ss_conf             775343421233117872


No 57 
>>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} (A:)
Probab=53.89  E-value=12  Score=16.85  Aligned_cols=80  Identities=11%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC-HHHH-------HHHHHH-HCCC
Q ss_conf             9389858968-8699999999879829994210000078520016447587999848-4679-------998862-0013
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS-SESL-------STLPAN-FCRH   70 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS-~~av-------~~~~~~-~~~~   70 (232)
                      |||+|.--.. ....+.+.|++.|+++..+|-.        ....++..+|.||++- +..+       ..+... ....
T Consensus        14 m~vliid~g~~~~~~i~~~l~~~g~~~~v~~~~--------~~~~~~~~~dgiii~GG~~~~~~~~~~~~~~~~~~~~~~   85 (212)
T 2a9v_A           14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPND--------IDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHN   85 (212)
T ss_dssp             CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETT--------SCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCC
T ss_pred             CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC--------CCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf             579999997678999999999789848999697--------999998468907983576554203321245677765158


Q ss_pred             CCEECCCHHHHHHHHHHC
Q ss_conf             630004158999976410
Q gi|255764510|r   71 TPIFAIGEASACLARQKG   88 (232)
Q Consensus        71 ~~~~~vg~~t~~~~~~~~   88 (232)
                      .|++.+--+-.-.....|
T Consensus        86 ~PiLGIC~G~Qll~~a~G  103 (212)
T 2a9v_A           86 YPILGICVGAQFIALHFG  103 (212)
T ss_dssp             SCEEEETHHHHHHHHHTT
T ss_pred             CEEEEEECCCEEEEEECC
T ss_conf             328998607556543124


No 58 
>>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus pcc 7942} (A:)
Probab=53.64  E-value=14  Score=16.46  Aligned_cols=50  Identities=10%  Similarity=-0.033  Sum_probs=30.3

Q ss_pred             CEEEEECCHH------HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             9389858968------869999999987982999421000007852001644758799984846
Q gi|255764510|r    1 MYIVITRPIK------KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilitRp~~------~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      |||+|.--..      -+..+++.|++.|...+..+-        .....++.+||.+||-|+-
T Consensus         1 mki~IiY~S~tGnT~~iA~~ia~~l~~~g~~~~~~~~--------~~~~~~l~~~d~iiig~pt   56 (169)
T 1czn_A            1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIA--------NADASDLNAYDYLIIGCPT   56 (169)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGG--------GCCGGGGGGCSEEEEECCE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECC--------CCCHHHHHCCCCEEEEEEC
T ss_conf             9099999999735999999999998437986898536--------4899898508763999615


No 59 
>>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* (A:)
Probab=53.56  E-value=8.2  Score=17.76  Aligned_cols=58  Identities=14%  Similarity=0.019  Sum_probs=28.2

Q ss_pred             CEEEEE----CCHHHHHHHHHHHHH-CCCCEEEECCEEEECCCCC--------C--CCCCCCCCCEEEEECHH
Q ss_conf             938985----896886999999998-7982999421000007852--------0--01644758799984846
Q gi|255764510|r    1 MYIVIT----RPIKKALRTQEKIQK-MGYIPVMMPLSYFIHDRES--------V--FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~~~~L~~-~G~~~i~~Pli~i~~~~~~--------~--~~~~~~~~d~iiftS~~   58 (232)
                      ||||+.    |+.....++++.+.+ ...+.+.+--.++.+....        .  ....+.++|.|||-||.
T Consensus         1 MKilii~gS~r~~~~t~~l~~~~~~g~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI~~~P~   73 (174)
T 3gfs_A            1 MNMLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE   73 (174)
T ss_dssp             --CEEEECCCCTTCHHHHHHHHHHHHTTCEEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHH
T ss_conf             9899997789987779999999982188059970026878656201347748789897634137824996314


No 60 
>>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:1-97,A:284-307)
Probab=53.50  E-value=14  Score=16.44  Aligned_cols=51  Identities=12%  Similarity=0.225  Sum_probs=33.7

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             9389858968869999999987982999421000007852001644758799984846
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      |+|++++|.+  ....+.|++.|......+-..-     +.....+.++|.++..+..
T Consensus         4 ~kVl~~~~~~--~~~~~~L~~~~~~~~~~~~~~~-----eel~~~l~d~d~ii~~~~~   54 (121)
T 1wwk_A            4 MKVLVAAPLH--EKAIQVLKDAGLEVIYEEYPDE-----DRLVELVKDVEAIIVRSKP   54 (121)
T ss_dssp             CEEEECSCCC--HHHHHHHHHTTCEEEECSSCCH-----HHHHHHSTTCSEEEESSCS
T ss_pred             CEEEEECCCC--HHHHHHHHHCCCEEEECCCCCH-----HHHHHHHCCCEEEEEECCC
T ss_conf             7899978999--9999999867998997899999-----9999984898099995998


No 61 
>>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* (A:255-404)
Probab=53.32  E-value=9.4  Score=17.41  Aligned_cols=12  Identities=33%  Similarity=0.374  Sum_probs=5.5

Q ss_pred             CCCCCEEEEECH
Q ss_conf             475879998484
Q gi|255764510|r   46 QQSYGAIAITSS   57 (232)
Q Consensus        46 ~~~~d~iiftS~   57 (232)
                      +.++|.|||-||
T Consensus        51 ~~~~d~ii~~sp   62 (150)
T 2ohh_A           51 ILESGAIALGAP   62 (150)
T ss_dssp             HHTCSEEEEECC
T ss_pred             HHHCCCEEEECC
T ss_conf             975893899347


No 62 
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:1-109,A:240-289)
Probab=53.31  E-value=8.6  Score=17.65  Aligned_cols=60  Identities=8%  Similarity=0.072  Sum_probs=22.9

Q ss_pred             HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEE
Q ss_conf             999999879829994210000078520016447587999848467999886200136300
Q gi|255764510|r   15 TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIF   74 (232)
Q Consensus        15 ~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~   74 (232)
                      +...+++.|+.++..+.-+.+-.........-...|++|+.+...-........++.|+.
T Consensus        33 I~~~a~~~GY~lli~~~~~~e~e~~~l~~l~~~~VDGIIl~~~~~~~~~~~ll~~~iPvV   92 (159)
T 3k9c_A           33 IYAAATRRGYDVXLSAVAPSRAEKVAVQALXRERCEAAILLGTRFDTDELGALADRVPAL   92 (159)
T ss_dssp             HHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCHHHHHHHHTTSCEE
T ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEE
T ss_conf             999999869989999489888999999999970975121102301588998754447758


No 63 
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230)
Probab=52.90  E-value=14  Score=16.38  Aligned_cols=92  Identities=12%  Similarity=-0.021  Sum_probs=60.1

Q ss_pred             CCCCEEEEECCCCCC-----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHC
Q ss_conf             777538972156756-----201468984698256768875046899988999862---378389980789999999713
Q gi|255764510|r  114 TPQKPLIYLGGKPRN-----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLP  185 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~-----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~  185 (232)
                      .+..++.++.++...     .-+.+.+.+.|..+....++..............++   ..+++|+..|-..+..++..+
T Consensus        15 ~G~~~i~~i~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~l   94 (129)
T 3gyb_A           15 LGHTHIAHLRVGSGAGLRRFESFEATXRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAA   94 (129)
T ss_dssp             TTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH
T ss_conf             02232200012320235667777789999743012112333343777655667776513686355312533113578998


Q ss_pred             CHHHC----CEEEEECCHHHHHHH
Q ss_conf             54405----803997188999999
Q gi|255764510|r  186 LPAKI----SAAFLCLSNNIASAI  205 (232)
Q Consensus       186 ~~~~~----~~~~~~ig~~tA~~~  205 (232)
                      ...+.    ++.++|++..-...+
T Consensus        95 ~~~g~~ip~di~ivgfd~~~~~~~  118 (129)
T 3gyb_A           95 RELGLRVPEDLSIIGYDNTPLAQT  118 (129)
T ss_dssp             HHHTCCTTTTCEEEEESCCHHHHS
T ss_pred             HHHHHHHCCCEEEEEECCCHHHHH
T ss_conf             876330001102454258278873


No 64 
>>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239)
Probab=52.86  E-value=14  Score=16.38  Aligned_cols=85  Identities=8%  Similarity=0.024  Sum_probs=57.1

Q ss_pred             CCCCEEEEECCCCCCC------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHH
Q ss_conf             7775389721567562------01468984698256768875046899988999862---37838998078999999971
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSL  184 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~  184 (232)
                      .+.+++.++.+.....      -+.+.+.++|..+.....+..............+.   .++++|+.++...+..+.+.
T Consensus        15 ~G~r~i~~i~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~   94 (130)
T 3k9c_A           15 LGHRNIAHIDGADAPGGADRRAGFLAAXDRHGLSASATVVTGGTTETEGAEGXHTLLEXPTPPTAVVAFNDRCATGVLDL   94 (130)
T ss_dssp             TTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCCCEEE
T ss_conf             23531121012246531257788988887632554212234566413678899998750357513321410211442000


Q ss_pred             CCHHHC----CEEEEECC
Q ss_conf             354405----80399718
Q gi|255764510|r  185 PLPAKI----SAAFLCLS  198 (232)
Q Consensus       185 ~~~~~~----~~~~~~ig  198 (232)
                      +...+.    ++.+++++
T Consensus        95 l~~~g~~iP~di~ii~fd  112 (130)
T 3k9c_A           95 LVRSGRDVPADISVVGYD  112 (130)
T ss_dssp             HHHTTCCTTTTCEEEEEE
T ss_pred             CCCCCCEEEECCCCCCCC
T ss_conf             014684455222245656


No 65 
>>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} (A:)
Probab=51.81  E-value=15  Score=16.28  Aligned_cols=114  Identities=14%  Similarity=0.049  Sum_probs=55.2

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE------------EEE--CCCCCCHHHHHHH-HCCCCEEEEECHH-HHH
Q ss_conf             75389721567562014689846982567688------------750--4689998899986-2378389980789-999
Q gi|255764510|r  116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC------------YYS--QDIAYPETTMKNL-LQNADAILFYARS-SVL  179 (232)
Q Consensus       116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v------------Y~~--~~~~~~~~~~~~~-~~~~d~i~f~S~~-~v~  179 (232)
                      .++++++........+...|.+.|..|.-+.-            |..  .......+.+... +.+.|.|+++.+. ...
T Consensus         4 ~~~i~IiG~G~~G~~la~~l~~~g~~V~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~i~~ad~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCEEEEEECCHHHH
T ss_conf             99999989899999999999977996799850156665545314855998986607778744920107799960867778


Q ss_pred             HHH-HHCCHHHCC-EEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             999-713544058-03997188999999976996699879999889999986
Q gi|255764510|r  180 YFF-SLPLPAKIS-AAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       180 ~~~-~~~~~~~~~-~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      ... ++....... +..-+..+.-.+.+++.|...++.+....-..+.+.+.
T Consensus        84 ~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~vi~~~~~~~~~~~~~i~  135 (140)
T 1lss_A           84 LMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPELIAANYIEKLIE  135 (140)
T ss_dssp             HHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH
T ss_conf             9999999983998189997598789999767999999889999999999942


No 66 
>>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein structure initiative; HET: TLA; 1.50A {Streptococcus pneumoniae TIGR4} (A:)
Probab=51.41  E-value=15  Score=16.24  Aligned_cols=45  Identities=11%  Similarity=-0.097  Sum_probs=22.5

Q ss_pred             HHHHHHHHCC-CCEEEECCE--EEECCC-----------------CCC--CCCCCCCCCEEEEECHH
Q ss_conf             9999999879-829994210--000078-----------------520--01644758799984846
Q gi|255764510|r   14 RTQEKIQKMG-YIPVMMPLS--YFIHDR-----------------ESV--FLAMQQSYGAIAITSSE   58 (232)
Q Consensus        14 ~~~~~L~~~G-~~~i~~Pli--~i~~~~-----------------~~~--~~~~~~~~d~iiftS~~   58 (232)
                      .+.+.+++.| .++-.+-+-  .+.+..                 ++.  ....+.++|.|||.||.
T Consensus        23 ~~~~~l~~~g~~ev~~i~l~~~~~~~c~gc~~c~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~sP~   89 (242)
T 1sqs_A           23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPV   89 (242)
T ss_dssp             HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEE
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCE
T ss_conf             9999986269937999972236877442133431044423366158999999999968978996642


No 67 
>>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} (D:1-193)
Probab=51.23  E-value=15  Score=16.22  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=48.0

Q ss_pred             CEEEEEC-CHHHH-HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH-HH------HH--------
Q ss_conf             9389858-96886-99999999879829994210000078520016447587999848467-99------98--------
Q gi|255764510|r    1 MYIVITR-PIKKA-LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES-LS------TL--------   63 (232)
Q Consensus         1 M~ilitR-p~~~a-~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a-v~------~~--------   63 (232)
                      |||+|.+ +.... ..+...|++.|+++...|.           ...+.++|.+|++-..+ +.      ..        
T Consensus         3 ~~I~ii~~~~~~~~~~~~~~l~~~g~~v~~~~~-----------~~~l~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~   71 (193)
T 3d54_D            3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGL-----------DDKLDDYELIILPGGFSYGDYLRPGAVAAREKIAFE   71 (193)
T ss_dssp             CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECT-----------TCCCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEC-----------HHHHHHCCEEEECCCCCHHHHHHHHHHHCHHHHHHH
T ss_conf             659999228818299999999986992899847-----------333402878997897640888998877430146689


Q ss_pred             -HHHHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             -862001363000415899997641012
Q gi|255764510|r   64 -PANFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        64 -~~~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                       .....+..|++.+-.+-.-.....+..
T Consensus        72 ~~~~~~~~~pilGIC~G~Q~L~~~~g~~   99 (193)
T 3d54_D           72 IAKAAERGKLIMGIXNGFQILIEMGLLK   99 (193)
T ss_dssp             HHHHHHHTCEEEECHHHHHHHHHHTSSC
T ss_pred             HHHHHHCCCCEEEEEEEEEEEECCCCCC
T ss_conf             9998746985798867667743023335


No 68 
>>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:1-99,A:286-313)
Probab=51.13  E-value=13  Score=16.65  Aligned_cols=50  Identities=22%  Similarity=0.233  Sum_probs=28.5

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             938985896886999999998798299942100000785200164475879998484
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      |+|+++++.+  ....+.|++.|+++...+-...+     .....+.++|.++..+.
T Consensus         6 ~kVli~~~~~--~~~~~~l~~~~~~v~~~~~~~~~-----el~~~l~~~dvii~~~~   55 (127)
T 2ekl_A            6 VKALITDPID--EILIKTLREKGIQVDYMPEISKE-----ELLNIIGNYDIIVVRSR   55 (127)
T ss_dssp             CEEEECSCCC--HHHHHHHHHTTCEEEECTTCCHH-----HHHHHGGGCSEEEECSS
T ss_pred             EEEEEECCCC--HHHHHHHHHCCCEEEECCCCCHH-----HHHHHHCCCCEEEECCC
T ss_conf             0899978999--99999998789889989998999-----99998289829998889


No 69 
>>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} (A:)
Probab=50.26  E-value=15  Score=16.13  Aligned_cols=115  Identities=10%  Similarity=-0.006  Sum_probs=63.6

Q ss_pred             CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE------------CC-CCCCHHHHHHH-HCCCCEEEEECHHHHH-
Q ss_conf             775389721567562014689846982567688750------------46-89998899986-2378389980789999-
Q gi|255764510|r  115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS------------QD-IAYPETTMKNL-LQNADAILFYARSSVL-  179 (232)
Q Consensus       115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~------------~~-~~~~~~~~~~~-~~~~d~i~f~S~~~v~-  179 (232)
                      ..++++++.+......+.+.|.+.|..|.-+.-...            .. .....+.+..+ +++.|+|+++.+.... 
T Consensus         5 ~~~~vlIiG~G~iG~~ia~~L~~~g~~vvvvd~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~ad~vi~~~~~~~~~   84 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA   84 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCCCEEEEEECCCHHH
T ss_conf             58828998878999999999997899089983898999999860662035114678888630221289999996884767


Q ss_pred             -HHHHHCCHHHCCEE-EE-ECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             -99971354405803-99-7188999999976996699879999889999986
Q gi|255764510|r  180 -YFFSLPLPAKISAA-FL-CLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       180 -~~~~~~~~~~~~~~-~~-~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                       .............. ++ .-.+.-.+.+++.|...++.+..-.-..+.+.+.
T Consensus        85 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~~~~~~a~~~~~~i~  137 (144)
T 2hmt_A           85 STLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLS  137 (144)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC
T ss_conf             99999999856999679998248899999978989999949999999999976


No 70 
>>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid binding, structural genomics; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* (A:181-319,A:446-496)
Probab=49.81  E-value=16  Score=16.09  Aligned_cols=75  Identities=11%  Similarity=0.028  Sum_probs=42.6

Q ss_pred             CEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHH---HHH-CCCCEEE-EECHHHHHHHHHHCC
Q ss_conf             53897215-----6756201468984698256768875046899988999---862-3783899-807899999997135
Q gi|255764510|r  117 KPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMK---NLL-QNADAIL-FYARSSVLYFFSLPL  186 (232)
Q Consensus       117 ~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~---~~~-~~~d~i~-f~S~~~v~~~~~~~~  186 (232)
                      ..|.++..     ..+...|.+.+++.|+.+.....+.........+...   .+. .+.++|+ |.+...+..+++.+.
T Consensus        18 ~~V~iI~~d~~YG~~~~~~f~~~~~~~gi~I~~~~~~~~~~~~~~~d~~~~l~~i~~~~a~vVv~~~~~~~~~~il~~a~   97 (190)
T 3ks9_A           18 TYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMR   97 (190)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHH
T ss_conf             78999995367888999999999997598799999826899878999999998874026427999846799999999999


Q ss_pred             HHHCC
Q ss_conf             44058
Q gi|255764510|r  187 PAKIS  191 (232)
Q Consensus       187 ~~~~~  191 (232)
                      ..+..
T Consensus        98 ~~glt  102 (190)
T 3ks9_A           98 RLGVV  102 (190)
T ss_dssp             HHTCC
T ss_pred             HHCCC
T ss_conf             83455


No 71 
>>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:)
Probab=49.68  E-value=16  Score=16.08  Aligned_cols=98  Identities=14%  Similarity=0.118  Sum_probs=48.3

Q ss_pred             CCEEEEECCC----CCCCCHHHHHHHCCCEEEEEEEE---EECCCCCCHHHHHHHHCCCCEEEEE-CHHHHHHHHHHCCH
Q ss_conf             7538972156----75620146898469825676887---5046899988999862378389980-78999999971354
Q gi|255764510|r  116 QKPLIYLGGK----PRNFHFEDYLIEHKIPLRVIDCY---YSQDIAYPETTMKNLLQNADAILFY-ARSSVLYFFSLPLP  187 (232)
Q Consensus       116 ~~~vl~~~g~----~~~~~l~~~L~~~g~~v~~~~vY---~~~~~~~~~~~~~~~~~~~d~i~f~-S~~~v~~~~~~~~~  187 (232)
                      .+++.++...    .....+.+.|.+.|+.+.-+.+-   .++.-......+.++-+++|.++++ .+..+...++.+.+
T Consensus        13 p~siaViGaS~~~~~~g~~v~~~L~~~g~~~~~~~p~~~~~~i~g~~~~~sl~~~~~~~D~vvi~vp~~~~~~~l~e~~~   92 (140)
T 1iuk_A           13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLA   92 (140)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHH
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCEEEECCHHHCCCCCCEEEEEECHHHHHHHHHHHHH
T ss_conf             99599992269999719999999972898389978767642556827525567758997289998088998999999996


Q ss_pred             HHCCEEEE---ECCHHHHHHHHHCCCCEE
Q ss_conf             40580399---718899999997699669
Q gi|255764510|r  188 AKISAAFL---CLSNNIASAIPASYKNVV  213 (232)
Q Consensus       188 ~~~~~~~~---~ig~~tA~~~~~~g~~~~  213 (232)
                      .+....++   .......+.+++.|...+
T Consensus        93 ~g~~~~~~~~g~~~e~~~~~~~~~gi~vv  121 (140)
T 1iuk_A           93 LRPGLVWLQSGIRHPEFEKALKEAGIPVV  121 (140)
T ss_dssp             HCCSCEEECTTCCCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHCCCEEE
T ss_conf             49898998989779999999999699799


No 72 
>>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} (A:)
Probab=49.50  E-value=12  Score=16.88  Aligned_cols=44  Identities=11%  Similarity=0.060  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             69999999987982999421000007852001644758799984846
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      +..+++.|++.|+++....+-+..   .......+.+||.|||-|+.
T Consensus        18 A~~ia~~l~~~g~~v~~~~~~~~~---~~~~~~~l~~~d~vi~gspt   61 (161)
T 3hly_A           18 SQAIGRGLVKTGVAVEXVDLRAVD---PQELIEAVSSARGIVLGTPP   61 (161)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTTCC---HHHHHHHHHHCSEEEEECCB
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCC---HHHHHHHCCCCCEEEECCCC
T ss_conf             999999988679969997635499---77863100314289988877


No 73 
>>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:1-107,A:298-330)
Probab=49.01  E-value=12  Score=16.82  Aligned_cols=53  Identities=9%  Similarity=-0.066  Sum_probs=23.2

Q ss_pred             CEEEEECCHHHHHHHHHHHHHC-CCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             9389858968869999999987-98299942100000785200164475879998484
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKM-GYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~-G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      |||+++++.++.  ....|++. ++++...+...  ..+.+.....+.++|.|+..+.
T Consensus         9 ~KIlv~~~~~~~--~~~~l~~~~~~~v~~~~~~~--~~~~eel~~~l~~~D~Ii~~~~   62 (140)
T 2gcg_A            9 MKVFVTRRIPAE--GRVALARAADCEVEQWDSDE--PIPAKELERGVAGAHGLLCLLS   62 (140)
T ss_dssp             EEEEESSCCCHH--HHHHHHHCTTEEEEECCSSS--CCCHHHHHHHHTTCSEEEECTT
T ss_pred             CEEEEECCCCHH--HHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHCCCCEEEECCC
T ss_conf             489996988999--99999862994899678889--9999999998289979999089


No 74 
>>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:158-285)
Probab=47.17  E-value=17  Score=15.84  Aligned_cols=88  Identities=8%  Similarity=-0.121  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHH
Q ss_conf             127775389721567562-------0146898469825676887504689998899986237838998078999999971
Q gi|255764510|r  112 LFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSL  184 (232)
Q Consensus       112 ~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~  184 (232)
                      ...+..++.++.+.....       -+.+.+.+.|..+.....+...................++++..+...+..++..
T Consensus        13 ~~~G~~~ia~i~~~~~~~~~~~R~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~   92 (128)
T 3jvd_A           13 LGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRA   92 (128)
T ss_dssp             CCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             34553168750465321124554466777898608642220025422457788898875043115554346666553578


Q ss_pred             CCHHHC----CEEEEECCH
Q ss_conf             354405----803997188
Q gi|255764510|r  185 PLPAKI----SAAFLCLSN  199 (232)
Q Consensus       185 ~~~~~~----~~~~~~ig~  199 (232)
                      +...+.    ++.+++++.
T Consensus        93 l~~~g~~vP~di~iv~~d~  111 (128)
T 3jvd_A           93 FTRLNVRVPHDVVIGGYDD  111 (128)
T ss_dssp             HHHTTCCTTTTCEEEEESC
T ss_pred             HHHHHHCCCCCEEEEEECC
T ss_conf             8887505789779999898


No 75 
>>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} (A:)
Probab=46.99  E-value=17  Score=15.82  Aligned_cols=66  Identities=6%  Similarity=0.012  Sum_probs=42.8

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE--------CHHHHHHHHHHHCCCCCEECCCHHHH
Q ss_conf             9999999987982999421000007852001644758799984--------84679998862001363000415899
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT--------SSESLSTLPANFCRHTPIFAIGEASA   81 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift--------S~~av~~~~~~~~~~~~~~~vg~~t~   81 (232)
                      ..+...|++.|+++-.....+..-   ......+.+||.|||-        |.+..+.+.....++..+.++..++.
T Consensus        35 ~~l~~~l~~~g~~v~~~~~~~~~~---~~~~~~L~~yDvvI~~~~~~~~~l~~~~~~~l~~~V~~GGglv~~~~~~~  108 (252)
T 1t0b_A           35 TVIASYLAEAGFDAATAVLDEPEH---GLTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVLHSGHF  108 (252)
T ss_dssp             HHHHHHHHHTTCEEEEEESSSGGG---GCCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEEGGGGG
T ss_pred             HHHHHHHHCCCCEEEEEECCCCCC---CCCHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             999998601783589996567645---58955721578899938888675798999999999985998899965657


No 76 
>>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} (A:122-261,A:351-391)
Probab=46.55  E-value=18  Score=15.78  Aligned_cols=104  Identities=9%  Similarity=-0.161  Sum_probs=58.5

Q ss_pred             HHHHHHHHCCCCCCEEEEECCC------CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHH--HHHHHCCCCEEEEE-C
Q ss_conf             9986422012777538972156------7562014689846982567688750468999889--99862378389980-7
Q gi|255764510|r  104 KIIVEQKVLFTPQKPLIYLGGK------PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETT--MKNLLQNADAILFY-A  174 (232)
Q Consensus       104 ~ll~~~~~~~~~~~~vl~~~g~------~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~--~~~~~~~~d~i~f~-S  174 (232)
                      .-+.+......+.+++.++..+      .....+.+.+.+.|..|.....|..-..+.....  ++..-.++|+|++. +
T Consensus         8 ~ala~yl~~~~g~kkvavi~~dd~~yG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~~d~~~~v~~lk~~~a~pdaVil~~~   87 (181)
T 3eaf_A            8 CSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREXLAADPDYVWCGNT   87 (181)
T ss_dssp             HHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSC
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECC
T ss_conf             88999999850367389998147830478999999999753675004662143112222024444443256426999525


Q ss_pred             HHHHHHHHHHCCHHHCCEEEEEC----CHHHHHHHHH
Q ss_conf             89999999713544058039971----8899999997
Q gi|255764510|r  175 RSSVLYFFSLPLPAKISAAFLCL----SNNIASAIPA  207 (232)
Q Consensus       175 ~~~v~~~~~~~~~~~~~~~~~~i----g~~tA~~~~~  207 (232)
                      +.....|++.+...+.+..+++.    ++.+.+.+.+
T Consensus        88 ~~~~~~~ikq~~~~g~~~~ii~~~~~~~~~~l~~~g~  124 (181)
T 3eaf_A           88 ISSCSLLGRAXAKVGLDAFLLTNVWGFDERSPQLIGE  124 (181)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEECGGGCSTTHHHHHCG
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf             5267899999997399852787414688999997678


No 77 
>>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:115-246)
Probab=46.39  E-value=18  Score=15.77  Aligned_cols=91  Identities=16%  Similarity=0.075  Sum_probs=60.4

Q ss_pred             CCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHHH---CCCCEEEEECHHHHHHH
Q ss_conf             27775389721567562-------01468984698256768875046899988-999862---37838998078999999
Q gi|255764510|r  113 FTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNLL---QNADAILFYARSSVLYF  181 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~~---~~~d~i~f~S~~~v~~~  181 (232)
                      ..+..++.++.+.....       -+.+.+.++|..+....++.......... ....++   ..++++++.|...+..+
T Consensus        14 ~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~d~~a~~~   93 (132)
T 3k4h_A           14 SLGHKQIAFIGGGSDLLVTRDRLAGXSDALKLADIVLPKEYILHFDFSRESGQQAVEELXGLQQPPTAIXATDDLIGLGV   93 (132)
T ss_dssp             HTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHH
T ss_pred             HHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH
T ss_conf             53154069994377750666554554110343024665200223332224799999999946999978974585211002


Q ss_pred             HHHCCHHHC----CEEEEECCHHHHH
Q ss_conf             971354405----8039971889999
Q gi|255764510|r  182 FSLPLPAKI----SAAFLCLSNNIAS  203 (232)
Q Consensus       182 ~~~~~~~~~----~~~~~~ig~~tA~  203 (232)
                      ...+...+.    ++.+++++..--.
T Consensus        94 ~~~l~~~g~~iP~di~iigfd~~~~~  119 (132)
T 3k4h_A           94 LSALSKKGFVVPKDVSIVSFNNALLS  119 (132)
T ss_dssp             HHHHHHTTCCTTTTCEEEEESCCHHH
T ss_pred             HHHHHHCCCCCCCCEEEEECCCHHHH
T ss_conf             79999808877751368630686789


No 78 
>>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:113-245)
Probab=46.03  E-value=18  Score=15.73  Aligned_cols=93  Identities=8%  Similarity=-0.049  Sum_probs=56.7

Q ss_pred             CCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             277753897215675620-------1468984698256768875046899988999862---378389980789999999
Q gi|255764510|r  113 FTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      ..+.++++++.|......       +.+.+++.+..+.....+....... .......+   ..+++|+.++...+....
T Consensus        16 ~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ai~~~~d~~a~gv~   94 (133)
T 3brs_A           16 VRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKA-YDGTVELLTKYPDISVMVGLNQYSATGAA   94 (133)
T ss_dssp             TSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHH-HHHHHHHHHHCTTEEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHH-HHHHHHHHHCCCCCCEEECCCCHHHHHHH
T ss_conf             34432158842553107788887649999986333342024321120899-99999765218752134215527899999


Q ss_pred             HHCCHHHC--CEEEEECC--HHHHHHHH
Q ss_conf             71354405--80399718--89999999
Q gi|255764510|r  183 SLPLPAKI--SAAFLCLS--NNIASAIP  206 (232)
Q Consensus       183 ~~~~~~~~--~~~~~~ig--~~tA~~~~  206 (232)
                      +.+...+.  ++.++++.  +.+.+.++
T Consensus        95 ~al~~~g~~~di~iig~D~~~~~~~~i~  122 (133)
T 3brs_A           95 RAIKDMSLEAKVKLVCIDSSMEQIQYLE  122 (133)
T ss_dssp             HHHHHTTCTTTSEEEEEESCSCC-----
T ss_pred             HHHHHCCCCCCEEEECCCCCHHHHHHHH
T ss_conf             9999749866403423689499999987


No 79 
>>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston bacterial structural genomics initiative, BSGI; 1.80A {Escherichia coli O157} PDB: 2b3d_A* (A:)
Probab=45.88  E-value=12  Score=16.80  Aligned_cols=14  Identities=0%  Similarity=-0.273  Sum_probs=8.7

Q ss_pred             CCCCCCEEEEECHH
Q ss_conf             44758799984846
Q gi|255764510|r   45 MQQSYGAIAITSSE   58 (232)
Q Consensus        45 ~~~~~d~iiftS~~   58 (232)
                      .+..+|.|||-||.
T Consensus        67 ~l~~AD~iV~~sP~   80 (204)
T 2amj_A           67 NFLWADVVIWQXPG   80 (204)
T ss_dssp             HHHHCSEEEEEEEC
T ss_pred             HHHCCCEEEEECCC
T ss_conf             99709989998585


No 80 
>>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} (A:)
Probab=45.25  E-value=18  Score=15.66  Aligned_cols=79  Identities=11%  Similarity=0.042  Sum_probs=51.1

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH-HHHHH-----------HHHHHC
Q ss_conf             938985896886999999998798299942100000785200164475879998484-67999-----------886200
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS-ESLST-----------LPANFC   68 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~-~av~~-----------~~~~~~   68 (232)
                      .+|+|..-...-..+.+.|++.|+++...|-           ..++.++|.||++-. ..+.-           +.....
T Consensus        24 ~~I~vid~~~~~~~~~~~l~~~G~~~~~~~~-----------~~~l~~~Dgvil~GG~~~~~~~~~~~~~~~~~i~~~~~   92 (219)
T 1q7r_A           24 XKIGVLGLQGAVREHVRAIEACGAEAVIVKK-----------SEQLEGLDGLVLPGGESTTXRRLIDRYGLXEPLKQFAA   92 (219)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHTTCEEEEECS-----------GGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEECC-----------HHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             7799996388499999999987996999899-----------89982699999899987999988545770999998754


Q ss_pred             CCCCEECCCHHHHHHHHHHCCC
Q ss_conf             1363000415899997641012
Q gi|255764510|r   69 RHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        69 ~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      .+.|++.+-.+-.-.....+..
T Consensus        93 ~~~PvlGiC~G~Q~L~~~lgg~  114 (219)
T 1q7r_A           93 AGKPXFGTCAGLILLAKRIVGY  114 (219)
T ss_dssp             TTCCEEEETTHHHHHEEEEESS
T ss_pred             CCCCEEEEEHHHHHHHHCCCCC
T ss_conf             6997899813057652203233


No 81 
>>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} (A:100-206)
Probab=44.80  E-value=19  Score=15.62  Aligned_cols=70  Identities=11%  Similarity=-0.009  Sum_probs=54.0

Q ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEECHHHHHHHHHHCC
Q ss_conf             1277753897215675620146898469825676887504689998899986-23783899807899999997135
Q gi|255764510|r  112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYARSSVLYFFSLPL  186 (232)
Q Consensus       112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S~~~v~~~~~~~~  186 (232)
                      ...++++|....|......+.+.+.+.|....++..|...     .+.+..+ .+++|+++...+.......+...
T Consensus        22 ~DLkGk~i~v~~gs~~~~~l~~~~~~~g~~~~~i~~~~~~-----~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~   92 (107)
T 2o1m_A           22 EDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGA-----NETANQLKSGRADATISTPFAVDFQNKTSTI   92 (107)
T ss_dssp             GGCTTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSST-----THHHHHHHHTSCSBEEECHHHHHHHHHHCSS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCH-----HHHHHHHHHHEECCCCCCCHHHHHHHHCCCC
T ss_conf             4566404776577769999999887517874220146999-----9999997645212224650677888753675


No 82 
>>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} (A:81-263)
Probab=44.22  E-value=19  Score=15.56  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=45.0

Q ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHH
Q ss_conf             27775389721567562014689846982567688750468999889998623783899807899
Q gi|255764510|r  113 FTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSS  177 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~  177 (232)
                      ...++++.++........+.+.|+..|..|..+.-+...........+.+++.+.|+|++.-|.+
T Consensus        41 ~l~g~~vgIvG~G~iG~~ia~~l~~fg~~v~~~~~~~~~~~~~~~~~~~ell~~aDiv~~~~plt  105 (183)
T 1qp8_A           41 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN  105 (183)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEECCCCC
T ss_conf             15798899987685389999999867988998436433342101387999962589999726798


No 83 
>>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} (A:)
Probab=44.02  E-value=19  Score=15.54  Aligned_cols=30  Identities=20%  Similarity=0.053  Sum_probs=15.8

Q ss_pred             EECCHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf             971889999999769966998799998899
Q gi|255764510|r  195 LCLSNNIASAIPASYKNVVTVACFPKETSL  224 (232)
Q Consensus       195 ~~ig~~tA~~~~~~g~~~~~va~~p~~~~l  224 (232)
                      ..+.+..|..+...|.+...+++.+....+
T Consensus       185 ~~l~~~la~el~~~gIrvn~i~PG~i~t~~  214 (270)
T 3ftp_A          185 AGMTRALAREIGSRGITVNCVAPGFIDTDM  214 (270)
T ss_dssp             HHHHHHHHHHHGGGTEEEEEEEECSBCSHH
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEECCCCCHH
T ss_conf             999999999964566479898538786833


No 84 
>>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:)
Probab=43.98  E-value=19  Score=15.54  Aligned_cols=79  Identities=11%  Similarity=0.022  Sum_probs=46.6

Q ss_pred             CE--EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHH-------------H
Q ss_conf             93--89858968869999999987982999421000007852001644758799984846799988-------------6
Q gi|255764510|r    1 MY--IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLP-------------A   65 (232)
Q Consensus         1 M~--ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~-------------~   65 (232)
                      ||  |+|..=-..-..+.+.|++.|+++...|           ...++.++|.||++-..+...-.             .
T Consensus         1 M~~~I~vi~~~~~~~~~~~~l~~~g~~v~~~~-----------~~~~l~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~   69 (191)
T 2ywd_A            1 MRGVVGVLALQGDFREHKEALKRLGIEAKEVR-----------KKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKR   69 (191)
T ss_dssp             --CCEEEECSSSCHHHHHHHHHTTTCCCEEEC-----------SGGGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHH
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf             98669999778679999999998799699989-----------9899615585797697659999873430010120000


Q ss_pred             HHCCCCCEECCCHHHHHHHHHHCCC
Q ss_conf             2001363000415899997641012
Q gi|255764510|r   66 NFCRHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        66 ~~~~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      ......|++.+-.+-.-.....+..
T Consensus        70 ~~~~~~PilGiC~G~Q~L~~~~gg~   94 (191)
T 2ywd_A           70 VEEGSLALFGTCAGAIWLAKEIVGY   94 (191)
T ss_dssp             HHTTCCEEEEETHHHHHHEEEETTC
T ss_pred             HCCCCCEEEEECHHHHHHHHCCCCC
T ss_conf             0045415899734344454204677


No 85 
>>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} (A:)
Probab=43.00  E-value=20  Score=15.45  Aligned_cols=40  Identities=8%  Similarity=-0.008  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             86999999998798299942100000785200164475879998484
Q gi|255764510|r   11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      -+..+++.|++.|.++...++.+..+       ..+.++|.++|-++
T Consensus        26 iA~~ia~~l~~~g~~v~~~~v~~~~~-------~~l~~~d~iv~g~~   65 (167)
T 1ykg_A           26 VAEALRDDLLAAKLNVKLVNAGDYKF-------KQIASEKLLIVVTS   65 (167)
T ss_dssp             HHHHHHHHHHHHTCCCEEEEGGGCCG-------GGGGGCSEEEEEEE
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCH-------HCCCCCCCEEEEEC
T ss_conf             99999999987699637742453110-------10235553389953


No 86 
>>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: FMN; 2.00A {Enterococcus faecalis} (A:)
Probab=42.70  E-value=17  Score=15.81  Aligned_cols=15  Identities=0%  Similarity=-0.144  Sum_probs=5.7

Q ss_pred             HHHHHHHC--CCCEEEE
Q ss_conf             99999987--9829994
Q gi|255764510|r   15 TQEKIQKM--GYIPVMM   29 (232)
Q Consensus        15 ~~~~L~~~--G~~~i~~   29 (232)
                      +++.+++.  |.++-.+
T Consensus        26 ~~~~l~~~~~g~ev~~i   42 (208)
T 2hpv_A           26 FLASYRETNPSDEIEIL   42 (208)
T ss_dssp             HHHHHHHHCTTSEEEEE
T ss_pred             HHHHHHHHCCCCEEEEE
T ss_conf             99999975999879999


No 87 
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243)
Probab=42.11  E-value=21  Score=15.36  Aligned_cols=87  Identities=13%  Similarity=0.036  Sum_probs=55.9

Q ss_pred             CCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHH
Q ss_conf             2777538972156756-------20146898469825676887504689998-8999862---37838998078999999
Q gi|255764510|r  113 FTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYF  181 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~  181 (232)
                      ..+.+++.++++....       .-+.+.|.++|..+....++......... .....++   ..+|+|+..+...+..+
T Consensus        15 ~~G~~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~   94 (133)
T 2rgy_A           15 EHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTXAVSA   94 (133)
T ss_dssp             HTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             53001100024675544311112136789987288643121223456788899998653013568753434683676655


Q ss_pred             HHHCCHHHC----CEEEEECCH
Q ss_conf             971354405----803997188
Q gi|255764510|r  182 FSLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       182 ~~~~~~~~~----~~~~~~ig~  199 (232)
                      +..+...+.    ++.+++++.
T Consensus        95 ~~~l~~~g~~vP~di~ivgfd~  116 (133)
T 2rgy_A           95 LARFQQLGISVPGDVSVIGYDD  116 (133)
T ss_dssp             HHHHHHTTCCTTTTCEEEEEEC
T ss_pred             HHHHHHCCCCCCCCCCCCCCCC
T ss_conf             6777650455785210221468


No 88 
>>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:1-111,A:300-332)
Probab=41.32  E-value=21  Score=15.29  Aligned_cols=21  Identities=14%  Similarity=-0.050  Sum_probs=9.6

Q ss_pred             HHHHHCCCCEEEECCCCCHHH
Q ss_conf             999976996699879999889
Q gi|255764510|r  203 SAIPASYKNVVTVACFPKETS  223 (232)
Q Consensus       203 ~~~~~~g~~~~~va~~p~~~~  223 (232)
                      +++.+.|+....++.--++|+
T Consensus        97 ~aa~erGI~V~N~pg~~~~~~  117 (144)
T 3k5p_A           97 KAARKRGIPVFNAPFGSTEEA  117 (144)
T ss_dssp             HHHHHTTCCEECCSSTCCHHH
T ss_pred             HHHCCCCHHEECCCCCCCHHH
T ss_conf             220023210011356278999


No 89 
>>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} (A:251-402)
Probab=41.26  E-value=21  Score=15.29  Aligned_cols=92  Identities=10%  Similarity=0.111  Sum_probs=43.4

Q ss_pred             CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHHHHHHHCCHHHCC-EEE--E-EC-
Q ss_conf             01468984698256768875046899988999862378389980789-------999999713544058-039--9-71-
Q gi|255764510|r  130 HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVLYFFSLPLPAKIS-AAF--L-CL-  197 (232)
Q Consensus       130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~~~~~~~~~~~~~-~~~--~-~i-  197 (232)
                      .+.+.|...|..|+.+.++     +...+.....+...|.|+|.||.       .+..|++.+.....+ ..+  + +- 
T Consensus        22 ~i~~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~iii~tP~y~~~~~~~~k~fi~~l~~~~~~~k~~~v~~~~~   96 (152)
T 1e5d_A           22 VLAESFRDEGCTVKLMWCK-----ACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFG   96 (152)
T ss_dssp             HHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEES
T ss_pred             HHHHHHHCCCCEEEEEECC-----CCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf             9987751369459999862-----33430225567537738994477576404999999999651355899899999038


Q ss_pred             -----CHHHHHHHHHCCCCE----EEECCCCCHHHHHH
Q ss_conf             -----889999999769966----99879999889999
Q gi|255764510|r  198 -----SNNIASAIPASYKNV----VTVACFPKETSLLK  226 (232)
Q Consensus       198 -----g~~tA~~~~~~g~~~----~~va~~p~~~~ll~  226 (232)
                           .....+.+...|+..    ..+...|+.+.+-+
T Consensus        97 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  134 (152)
T 1e5d_A           97 WSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQ  134 (152)
T ss_dssp             SSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHH
T ss_conf             87489999999999884999748689971689899999


No 90 
>>2ax3_A Hypothetical protein TM0922; TM0922, hypothetical protein, structural genomics, joint center for structural genomics, JCSG; 2.27A {Thermotoga maritima MSB8} (A:1-213)
Probab=41.06  E-value=21  Score=15.27  Aligned_cols=66  Identities=12%  Similarity=0.016  Sum_probs=37.3

Q ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             641012235444545678999864220127775389721567562----0146898469825676887504
Q gi|255764510|r   85 RQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQ  151 (232)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~  151 (232)
                      .+.|..........+....+.+.+... ..+..+|+++||.+.+.    .+...|..+|++|..+.+....
T Consensus        22 ~~~g~~~~~LME~Ag~~~a~~i~~~~~-~~~~~~v~vlcG~GnNGGDGlv~AR~L~~~G~~V~v~~~~~~~   91 (213)
T 2ax3_A           22 KEYGVDSRILXERAGISVVLAXEEELG-NLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKK   91 (213)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHHHHS-CCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSC
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             874939999999999999999999667-4579969999889978999999999998689957999968999


No 91 
>>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} (A:127-259,A:340-385)
Probab=40.05  E-value=19  Score=15.54  Aligned_cols=78  Identities=6%  Similarity=0.016  Sum_probs=47.5

Q ss_pred             CCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCC-CCHHHHHHHH-CCCCEEE-EECHHHHHHHHHHC
Q ss_conf             777538972156-----75620146898469825676887504689-9988999862-3783899-80789999999713
Q gi|255764510|r  114 TPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-YPETTMKNLL-QNADAIL-FYARSSVLYFFSLP  185 (232)
Q Consensus       114 ~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-~~~~~~~~~~-~~~d~i~-f~S~~~v~~~~~~~  185 (232)
                      .+.++|.++..+     .....+.+.++++|..+.....|...+.. +....+..+. .++|+|+ +.++..+..|++.+
T Consensus        12 ~g~kkVaiI~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~D~~~~i~~i~~~~pd~Vi~~~~~~~~~~~l~qa   91 (179)
T 1pea_A           12 HYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAI   91 (179)
T ss_dssp             TTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHH
T ss_pred             HCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHH
T ss_conf             17847998226776235565546666664168357899616764420168999998751899899996347799999999


Q ss_pred             CHHHCC
Q ss_conf             544058
Q gi|255764510|r  186 LPAKIS  191 (232)
Q Consensus       186 ~~~~~~  191 (232)
                      ...+..
T Consensus        92 ~~~Gl~   97 (179)
T 1pea_A           92 ARRYGD   97 (179)
T ss_dssp             HHHHCS
T ss_pred             HHHCCC
T ss_conf             984799


No 92 
>>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} (A:)
Probab=39.05  E-value=22  Score=15.20  Aligned_cols=49  Identities=10%  Similarity=-0.044  Sum_probs=28.7

Q ss_pred             CE-EEEEC--CHHH----HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             93-89858--9688----69999999987982999421000007852001644758799984846
Q gi|255764510|r    1 MY-IVITR--PIKK----ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~-ilitR--p~~~----a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      |+ |+|.-  ....    +..+++.|++.|+++..++..+         ..++.+||.+||-|+-
T Consensus         1 M~ki~I~Y~S~~GnTe~iA~~ia~~l~~~~~~v~~~~~~~---------~~~l~~~d~ii~g~pt   56 (169)
T 1obo_A            1 AKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAE---------VTDLNDYQYLIIGCPT   56 (169)
T ss_dssp             CCSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCC---------GGGGGGCSEEEEEEEE
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---------HHHHCCCCEEEEEEEE
T ss_conf             9789999999982699999999998556873799856578---------7686068779999820


No 93 
>>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:1-125,A:270-293)
Probab=39.04  E-value=8.1  Score=17.80  Aligned_cols=19  Identities=11%  Similarity=0.165  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHCCCCEEEE
Q ss_conf             8699999999879829994
Q gi|255764510|r   11 KALRTQEKIQKMGYIPVMM   29 (232)
Q Consensus        11 ~a~~~~~~L~~~G~~~i~~   29 (232)
                      ...++++.|.+.|+++...
T Consensus        16 R~s~vArsL~~~Ga~V~~~   34 (149)
T 3d4o_A           16 RQLEIIRKLSTFDAKISLV   34 (149)
T ss_dssp             HHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEE
T ss_conf             3999999999789989999


No 94 
>>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A (A:)
Probab=38.71  E-value=23  Score=15.04  Aligned_cols=64  Identities=9%  Similarity=-0.074  Sum_probs=38.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             0122354445456789998642201---27775389721567562----0146898469825676887504
Q gi|255764510|r   88 GFTQIFHGKDNSINLAKIIVEQKVL---FTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQ  151 (232)
Q Consensus        88 ~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~  151 (232)
                      |.......+..+...++.+.+....   .....+|+++||.+.+.    .....|..+|+.|..+.++...
T Consensus        48 Gi~~~~LME~Ag~~~a~~i~~~~~~~~~~~~~~~V~il~G~GnNGGDGl~~Ar~L~~~G~~V~v~~~~~~~  118 (265)
T 2o8n_A           48 QFSVDQLXELAGLSCATAIAKAYPPTSXSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPN  118 (265)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHSCGGGSSSSSCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCSCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             98999999999999999999965622235679739999878986388899999999869806999957877


No 95 
>>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} (A:1-182)
Probab=37.81  E-value=24  Score=14.96  Aligned_cols=43  Identities=7%  Similarity=-0.030  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC
Q ss_conf             699999999879829994210000078520016447587999848
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS   56 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS   56 (232)
                      |..+++.|++.|+++...++-+..+..  ....++..++.+||-+
T Consensus        39 A~~la~~l~~~G~~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~   81 (182)
T 1ja1_A           39 ANRLSKDAHRYGMRGMSADPEEYDLAD--LSSLPEIDKSLVVFCM   81 (182)
T ss_dssp             HHHHHHHGGGGTCCEEEECGGGSCGGG--GGGGGGSTTCEEEEEE
T ss_pred             HHHHHHHHHHCCCCEEECCHHHCCHHH--HHHCCCCCCCEEEEEE
T ss_conf             999999999679974973658789878--7523245785699998


No 96 
>>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292)
Probab=37.12  E-value=25  Score=14.89  Aligned_cols=86  Identities=9%  Similarity=0.029  Sum_probs=54.1

Q ss_pred             CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             77753897215675620-------146898469825676887504689998-8999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+..++.++.+......       +.+.+.++|..+....++......... +....++   ..+|+++..|...+..++
T Consensus        15 ~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~g~~   94 (132)
T 1qpz_A           15 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGAL   94 (132)
T ss_dssp             HTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCC
T ss_conf             59985999828855531789998899999985999982218954342667999999998179998089977709987402


Q ss_pred             HHCCHHHC----CEEEEECCH
Q ss_conf             71354405----803997188
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~  199 (232)
                      +.+...+.    ++.+++++.
T Consensus        95 ~~l~~~g~~ip~di~i~~fd~  115 (132)
T 1qpz_A           95 CAADEMGLRVPQDVSLIGYDN  115 (132)
T ss_dssp             HHHHHTTCCTTTTCEEEEEEC
T ss_pred             HHHHHCCCCCCCCEEEEEECC
T ss_conf             269873997898759998788


No 97 
>>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241)
Probab=37.12  E-value=25  Score=14.89  Aligned_cols=86  Identities=9%  Similarity=0.029  Sum_probs=54.1

Q ss_pred             CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             77753897215675620-------146898469825676887504689998-8999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+..++.++.+......       +.+.+.++|..+....++......... +....++   ..+|+++..|...+..++
T Consensus        15 ~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~g~~   94 (132)
T 1dbq_A           15 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGAL   94 (132)
T ss_dssp             TTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH
T ss_conf             59966999637631247899997667899980899772002357677777899999998459998458855789999999


Q ss_pred             HHCCHHHC----CEEEEECCH
Q ss_conf             71354405----803997188
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~  199 (232)
                      +.+...+.    ++.+++++.
T Consensus        95 ~~l~~~g~~ip~di~i~~fd~  115 (132)
T 1dbq_A           95 CAADEMGLRVPQDVSLIGYDN  115 (132)
T ss_dssp             HHHHHTTCCTTTTCEEEEEEC
T ss_pred             HHHHHCCCCCCCCEEEEEECC
T ss_conf             999986999997569996068


No 98 
>>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293)
Probab=36.70  E-value=25  Score=14.85  Aligned_cols=85  Identities=11%  Similarity=0.149  Sum_probs=56.4

Q ss_pred             CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHH--HHHCCCCEEEEECHHHHHHHHHH
Q ss_conf             77753897215675620-------1468984698256768875046899988999--86237838998078999999971
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMK--NLLQNADAILFYARSSVLYFFSL  184 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~--~~~~~~d~i~f~S~~~v~~~~~~  184 (232)
                      .+..++.++.+......       +.+.+.+.|..+....++.............  ......+++++.+...+..+++.
T Consensus        15 ~G~r~I~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~~~~~~   94 (130)
T 2o20_A           15 SGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVVSHDTVAVGLLSA   94 (130)
T ss_dssp             TTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHH
T ss_pred             HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH
T ss_conf             18876443347877821999999999999984999885569955624777799999986403452001355655554389


Q ss_pred             CCHHHC----CEEEEECC
Q ss_conf             354405----80399718
Q gi|255764510|r  185 PLPAKI----SAAFLCLS  198 (232)
Q Consensus       185 ~~~~~~----~~~~~~ig  198 (232)
                      +...+.    ++.+++++
T Consensus        95 l~~~g~~iP~di~ii~fd  112 (130)
T 2o20_A           95 MMDKGVKVPEDFEIISGA  112 (130)
T ss_dssp             HHHTTCCTTTTCEEEESS
T ss_pred             HHHHCCCCCCCEEEEEEC
T ss_conf             998289888976999837


No 99 
>>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} (A:)
Probab=36.65  E-value=25  Score=14.85  Aligned_cols=91  Identities=5%  Similarity=-0.068  Sum_probs=53.7

Q ss_pred             CCCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEECCCC-CCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC
Q ss_conf             777538972156-75620146898469825676887504689-9988999862378389980789999999713544058
Q gi|255764510|r  114 TPQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-YPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS  191 (232)
Q Consensus       114 ~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~  191 (232)
                      ...+.|--|+.. +-++++.+.|+++|+.+..+..--=.-.- ...+.+..-.. ..-...-|..+++..-+.-..   .
T Consensus       175 ~~~GsVAAPTAGLHFt~~ll~~l~~kGv~~a~iTLHVG~GTF~pv~~di~~H~m-h~E~~~i~~~ta~~i~~ak~~---G  250 (345)
T 1wdi_A          175 RRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVKGDPEKHEM-HAEPYAIPEEVAEAVNRAKAE---G  250 (345)
T ss_dssp             ------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC---------C-CCEEEEECHHHHHHHHHHHHT---T
T ss_pred             CCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCC-CCEEEEECHHHHHHHHHHHHC---C
T ss_conf             689855256687777899999999741505679996224444653352235787-765999829999999999973---9


Q ss_pred             EEEEECCHHHHHHHHHC
Q ss_conf             03997188999999976
Q gi|255764510|r  192 AAFLCLSNNIASAIPAS  208 (232)
Q Consensus       192 ~~~~~ig~~tA~~~~~~  208 (232)
                      -+++|+|-++..+++..
T Consensus       251 ~RviAVGTT~vRaLEsa  267 (345)
T 1wdi_A          251 RRVVAVGTTVVRALESA  267 (345)
T ss_dssp             CCEEEESHHHHHHHHHT
T ss_pred             CCEEEEEHHHHHHHHHH
T ss_conf             94899846899999999


No 100
>>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237)
Probab=36.64  E-value=25  Score=14.85  Aligned_cols=103  Identities=16%  Similarity=0.062  Sum_probs=61.9

Q ss_pred             CCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             277753897215675620-------1468984698256768875046899988999862---378389980789999999
Q gi|255764510|r  113 FTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      ..+.++++++.|......       +.+.++++|........+..-..+...+....++   .++++|+..+...+....
T Consensus        16 ~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~   95 (133)
T 2ioy_A           16 LKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAI   95 (133)
T ss_dssp             TTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
T ss_conf             69998799997999986999999999999987899805777516411799999999998569698399967808888779


Q ss_pred             HHCCHHHC-CEEEEEC-CHHHHHHHHHCCCCEEEE
Q ss_conf             71354405-8039971-889999999769966998
Q gi|255764510|r  183 SLPLPAKI-SAAFLCL-SNNIASAIPASYKNVVTV  215 (232)
Q Consensus       183 ~~~~~~~~-~~~~~~i-g~~tA~~~~~~g~~~~~v  215 (232)
                      +.+...+. ++.++++ +...+..+-..|.--..|
T Consensus        96 ~al~~~gp~di~iig~d~~~~~~~~~~~~~~~~tV  130 (133)
T 2ioy_A           96 KAIEAANRQGIIVVGFDGTEDALKAIKEGKMAATI  130 (133)
T ss_dssp             HHHHHTTCCCCEEEEEECCHHHHHHHHTTSCCEEE
T ss_pred             HHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEE
T ss_conf             99998199987799853708899997439962899


No 101
>>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* (A:1-165)
Probab=36.50  E-value=25  Score=14.83  Aligned_cols=91  Identities=11%  Similarity=-0.020  Sum_probs=44.3

Q ss_pred             CCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHC-----CCCEEE-EECHHHHHHHHH
Q ss_conf             7775389721567562----014689846982567688750468999889998623-----783899-807899999997
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQ-----NADAIL-FYARSSVLYFFS  183 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~-----~~d~i~-f~S~~~v~~~~~  183 (232)
                      .+.++++++++....+    .+.+.|.+.|+.+..+.-++..+....-+...++..     +.|.|+ +...+..+...-
T Consensus        29 ~~~~~~livtd~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~d~iiaiGGGs~~D~ak~  108 (165)
T 1xah_A           29 NQFDQSFLLIDEYVNQYFANKFDDILSYENVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGF  108 (165)
T ss_dssp             TTCSCEEEEEEHHHHHHHHHHHC------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHH
T ss_pred             HHCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
T ss_conf             73597999999857899999999999777957999728876677878999888888765412342145242788878766


Q ss_pred             HCCHHHCCEEEEECCHHHHHHH
Q ss_conf             1354405803997188999999
Q gi|255764510|r  184 LPLPAKISAAFLCLSNNIASAI  205 (232)
Q Consensus       184 ~~~~~~~~~~~~~ig~~tA~~~  205 (232)
                      ..........+++| |+|+...
T Consensus       109 ~a~~~~~~~p~i~I-PTt~~tg  129 (165)
T 1xah_A          109 VAATLLRGVHFIQV-PTTILAH  129 (165)
T ss_dssp             HHHHBTTCCEEEEE-ECSTTHH
T ss_pred             HHHHHCCCCCEEEE-ECCCCCC
T ss_conf             02532378624775-0432102


No 102
>>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer; HET: NAI UGA; 1.80A {Streptococcus pyogenes} (A:307-402)
Probab=35.67  E-value=26  Score=14.75  Aligned_cols=48  Identities=4%  Similarity=0.061  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHCCCCE-EEECCEEEECCCCCCC-----CCCCCCCCEEEEECHHH
Q ss_conf             699999999879829-9942100000785200-----16447587999848467
Q gi|255764510|r   12 ALRTQEKIQKMGYIP-VMMPLSYFIHDRESVF-----LAMQQSYGAIAITSSES   59 (232)
Q Consensus        12 a~~~~~~L~~~G~~~-i~~Pli~i~~~~~~~~-----~~~~~~~d~iiftS~~a   59 (232)
                      +..+++.|.+.|+++ ++=|...-........     .....++|++|++..+-
T Consensus        25 a~~i~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~e~~~~aD~vii~~~h~   78 (96)
T 1dlj_A           25 IKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDN   78 (96)
T ss_dssp             HHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSSCCG
T ss_pred             HHHHHHHHHHCCCEEEEECCCCCHHHHCCCCEEECCHHHHHHCCCEEEECCCHH
T ss_conf             999999999789989999998982363257478278999973794999848738


No 103
>>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285)
Probab=35.36  E-value=26  Score=14.72  Aligned_cols=90  Identities=10%  Similarity=0.083  Sum_probs=56.9

Q ss_pred             CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHH
Q ss_conf             7775389721567562-------01468984698256768875046899988999862---3783899807899999997
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFS  183 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~  183 (232)
                      .+..++.++.+.....       -+.+.+.++|..+............ .......++   ..+++|+.++-..+..+++
T Consensus        15 ~G~r~I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~~~~~   93 (130)
T 3ctp_A           15 KGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVK-MLEEDINSMKDIVNYDGIFVFNDIAAATVMR   93 (130)
T ss_dssp             TTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGG-GGGCCCTTGGGGGGSSEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHCCHHHHHHHHH
T ss_conf             699669996463454168888876201366513562223210024577-8999999985055998455246587899999


Q ss_pred             HCCHHHC----CEEEEECCHHHHHH
Q ss_conf             1354405----80399718899999
Q gi|255764510|r  184 LPLPAKI----SAAFLCLSNNIASA  204 (232)
Q Consensus       184 ~~~~~~~----~~~~~~ig~~tA~~  204 (232)
                      .+...+.    ++.+++++..-...
T Consensus        94 ~l~~~g~~ip~di~iigfd~~~~~~  118 (130)
T 3ctp_A           94 ALKKRGVSIPQEVQIIGFDNSFIGE  118 (130)
T ss_dssp             HHHHTTCCTTTTCEEECSBCCTHHH
T ss_pred             HHHHCCCCCCCCEEECCCCCHHHHH
T ss_conf             9998499988433321248768898


No 104
>>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} (A:)
Probab=35.25  E-value=16  Score=16.05  Aligned_cols=53  Identities=13%  Similarity=0.025  Sum_probs=27.6

Q ss_pred             CEEEEECC--HHHHHHHHHHHHHCCCC-EEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             93898589--68869999999987982-999421000007852001644758799984846
Q gi|255764510|r    1 MYIVITRP--IKKALRTQEKIQKMGYI-PVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilitRp--~~~a~~~~~~L~~~G~~-~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      |||+|.--  .....+.|+.+.+. ++ .-+..++++.    .....++.+||.+||-|+-
T Consensus         1 Mki~I~Y~S~tGnT~~iA~~ia~~-l~~~g~~~~~~~~----~~~~~~l~~~d~vi~g~~t   56 (179)
T 1yob_A            1 AKIGLFFGSNTGKTRKVAKSIKKR-FDDETMSDALNVN----RVSAEDFAQYQFLILGTPT   56 (179)
T ss_dssp             CCEEEEECCSSSHHHHHHHHHHTT-SCTTTBCCCEEGG----GCCHHHHHTCSEEEEEEEC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHH-HHHCCCEEEEECC----CCCHHHHCCCCEEEEEECC
T ss_conf             909999999755689999999999-7417991899723----3787682479879999828


No 105
>>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99)
Probab=34.96  E-value=27  Score=14.68  Aligned_cols=69  Identities=9%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH--CCCCCEE
Q ss_conf             9389858968-869999999987982999421000007852001644758799984846799988620--0136300
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF--CRHTPIF   74 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~--~~~~~~~   74 (232)
                      |||||.=... -...+...|++.|+++......+     .......-..||.|+.--.+|.+.+....  ....|+.
T Consensus         1 mrILiVeDd~~~~~~i~~~L~~~g~~v~~a~~~~-----~a~~~~~~~~~dlviLp~~~G~~ll~~lr~~~~~~pvI   72 (99)
T 2hqr_A            1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLE-----DGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVL   72 (99)
T ss_dssp             CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHH-----HHHHHHTTSCCSEEEECCTTHHHHHHHHHHHCTTSEEE
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHH-----HHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9899995799999999999998799999989999-----99999973698611022233211112222222222221


No 106
>>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240)
Probab=34.78  E-value=27  Score=14.66  Aligned_cols=88  Identities=10%  Similarity=-0.016  Sum_probs=59.6

Q ss_pred             CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCC-CHHHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             77753897215675620-------1468984698256768875046899-988999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAY-PETTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~-~~~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+..+|.++.+......       +.+.++++|..+.....+....... ........+   ..+++|+..|...+..++
T Consensus        15 ~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~   94 (132)
T 3egc_A           15 RGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAM   94 (132)
T ss_dssp             TTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCE
T ss_conf             69955866127721220335558999999983998543013247752677899999998547886302202320024513


Q ss_pred             HHCCHHHC----CEEEEECCHHH
Q ss_conf             71354405----80399718899
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSNNI  201 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~~t  201 (232)
                      +.+...+.    ++.+++++...
T Consensus        95 ~~l~~~g~~iP~di~vvg~d~~~  117 (132)
T 3egc_A           95 QALNVLGLRYGPDVEIVSFDNLP  117 (132)
T ss_dssp             HHHHHHTCCBTTTBEEEEESCCG
T ss_pred             EHHHCCCCCCCCCEEEEECCCHH
T ss_conf             12220598567540145317768


No 107
>>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296)
Probab=34.12  E-value=28  Score=14.60  Aligned_cols=88  Identities=11%  Similarity=0.116  Sum_probs=56.8

Q ss_pred             CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             77753897215675620-------1468984698256768875046899988-999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+.+++.++.+......       +.+.++++|..+.....+.......... ....++   ..+++|+..|...+..++
T Consensus        16 ~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~   95 (133)
T 3dbi_A           16 AGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVASNDDXAIGAX   95 (133)
T ss_dssp             TTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf             49985999978999866999999999999983999883147615764677999999998348886499967899999999


Q ss_pred             HHCCHHHC----CEEEEECCHHH
Q ss_conf             71354405----80399718899
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSNNI  201 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~~t  201 (232)
                      +.+...+.    ++.+++++...
T Consensus        96 ~~l~~~g~~vP~di~i~~~d~~~  118 (133)
T 3dbi_A           96 KALHERGVAVPEQVSVIGFDDIA  118 (133)
T ss_dssp             HHHHHTTCCTTTTCEEEEESCCT
T ss_pred             HHHHHCCCCCCCCEEEEEECCHH
T ss_conf             99997599989986999989818


No 108
>>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254)
Probab=34.12  E-value=28  Score=14.60  Aligned_cols=88  Identities=11%  Similarity=0.116  Sum_probs=56.8

Q ss_pred             CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             77753897215675620-------1468984698256768875046899988-999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+.+++.++.+......       +.+.++++|..+.....+.......... ....++   ..+++|+..|...+..++
T Consensus        16 ~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~   95 (133)
T 3brq_A           16 AGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVASNDDXAIGAX   95 (133)
T ss_dssp             TTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHH
T ss_pred             HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHE
T ss_conf             03655999957755653033545999999863987772035326765210567779998558998722358808884224


Q ss_pred             HHCCHHHC----CEEEEECCHHH
Q ss_conf             71354405----80399718899
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSNNI  201 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~~t  201 (232)
                      +.+...+.    ++.+++++...
T Consensus        96 ~~l~~~g~~vP~di~i~~~d~~~  118 (133)
T 3brq_A           96 KALHERGVAVPEQVSVIGFDDIA  118 (133)
T ss_dssp             HHHHHHTCCTTTTCEEEEESCCT
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCH
T ss_conf             43665498788640000556717


No 109
>>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} (A:)
Probab=33.91  E-value=28  Score=14.58  Aligned_cols=43  Identities=9%  Similarity=0.054  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             8869999999987982999421000007852001644758799984846
Q gi|255764510|r   10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus        10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      .-+..+++.|++.|+++....+.+..+      ......++.++|.|+.
T Consensus        16 ~~A~~ia~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~ii~~~~t   58 (147)
T 1f4p_A           16 YTAETIARELADAGYEVDSRDAASVEA------GGLFEGFDLVLLGCST   58 (147)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEGGGCCS------TTTTTTCSEEEEEECE
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCCCCH------HHHCCCCCEEEEEEEC
T ss_conf             999999999876598069986000565------5540246779999714


No 110
>>2zkl_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, isomerase; 2.61A {Staphylococcus aureus} (A:1-130)
Probab=33.59  E-value=28  Score=14.55  Aligned_cols=30  Identities=17%  Similarity=0.076  Sum_probs=23.6

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC
Q ss_conf             9389858968-86999999998798299942
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||||=-.. =+..++..|.+.|..++..-
T Consensus         1 MkIlVtGasGfiG~~lv~~L~~~g~~v~~~~   31 (130)
T 2zkl_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEV   31 (130)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             9899999997799999999985799499996


No 111
>>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} (A:)
Probab=33.56  E-value=21  Score=15.29  Aligned_cols=38  Identities=13%  Similarity=-0.039  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             69999999987982999421000007852001644758799984846
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      +..+++.|+..|+++..++..+         ...+.+||.+||-|+-
T Consensus        18 A~~ia~~l~~~~~~v~~~~~~~---------~~~l~~~d~ii~g~pt   55 (175)
T 1ag9_A           18 AKMIQKQLGKDVADVHDIAKSS---------KEDLEAYDILLLGIPT   55 (175)
T ss_dssp             HHHHHHHHCTTTEEEEEGGGCC---------HHHHHTCSEEEEECCE
T ss_pred             HHHHHHHHCCCCCEEEECCCHH---------HHHCCCCCEEEEEECC
T ss_conf             9999998551783799841123---------3311455369999646


No 112
>>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} (A:)
Probab=33.51  E-value=28  Score=14.60  Aligned_cols=58  Identities=12%  Similarity=-0.009  Sum_probs=35.4

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCC-----CCCCCCCCCEEEEECHH
Q ss_conf             9389858968-8699999999879829994210000078520-----01644758799984846
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESV-----FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-----~~~~~~~~d~iiftS~~   58 (232)
                      ||||||=-.. =+..++..|.+.|.+++..---.........     ........|.++.....
T Consensus         1 MkILVtGatGfiG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf             9799989998899999999987899999978985444668899999999997599999975312


No 113
>>2g1u_A Hypothetical protein TM1088A; , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: AMP; 1.50A {Thermotoga maritima} (A:)
Probab=33.20  E-value=29  Score=14.51  Aligned_cols=117  Identities=9%  Similarity=-0.000  Sum_probs=62.4

Q ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE--------------CCCCCCHHHHHHH-HCCCCEEEEECHH
Q ss_conf             127775389721567562014689846982567688750--------------4689998899986-2378389980789
Q gi|255764510|r  112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS--------------QDIAYPETTMKNL-LQNADAILFYARS  176 (232)
Q Consensus       112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~--------------~~~~~~~~~~~~~-~~~~d~i~f~S~~  176 (232)
                      .....++++++..+.....+.+.|.+.|..|.-+.-=..              .......+.+..+ +.+.++|+...+.
T Consensus        15 ~~~~~~~vvIiG~G~~g~~ia~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~   94 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             HHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCC
T ss_conf             22169808998988899999999997899699995688986667765324565410210156666544203234202698


Q ss_pred             HHHHHH--HHCCHHHCCEE--EEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH
Q ss_conf             999999--71354405803--997188999999976996699879999889999986
Q gi|255764510|r  177 SVLYFF--SLPLPAKISAA--FLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP  229 (232)
Q Consensus       177 ~v~~~~--~~~~~~~~~~~--~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~  229 (232)
                      ...++.  ...........  ..+-.+..++.+++.|...+ .+..-.-+.|...+.
T Consensus        95 d~~n~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~vi-~~~~~~a~~l~~~~~  150 (155)
T 2g1u_A           95 DSTNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIKTI-CPAVLMIEKVKEFII  150 (155)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCEEE-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEE-CCHHHHHHHHHHHCC
T ss_conf             78999999979988799849999879889999997799898-820999999999644


No 114
>>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:236-373)
Probab=33.14  E-value=29  Score=14.50  Aligned_cols=45  Identities=11%  Similarity=-0.118  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCHHHHHHHCCCEEEE
Q ss_conf             678999864220127775389721-567562014689846982567
Q gi|255764510|r  100 INLAKIIVEQKVLFTPQKPLIYLG-GKPRNFHFEDYLIEHKIPLRV  144 (232)
Q Consensus       100 ~~~~~ll~~~~~~~~~~~~vl~~~-g~~~~~~l~~~L~~~g~~v~~  144 (232)
                      ....+.+........++++++++| .....+.+.+.|.+.|+.+..
T Consensus        16 ~~~~~~l~~~i~~~~~~~~~lIf~~t~~~~~~l~~~L~~~~~~~~~   61 (138)
T 2v1x_A           16 EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGA   61 (138)
T ss_dssp             HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCCEEEE
T ss_conf             5567788898876335776169975422145677887641860331


No 115
>>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} (A:95-251)
Probab=32.91  E-value=29  Score=14.48  Aligned_cols=17  Identities=18%  Similarity=-0.037  Sum_probs=8.7

Q ss_pred             HHHHHHHHCCCCEEEEC
Q ss_conf             99999998798299942
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMP   30 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~P   30 (232)
                      -++..|++.|++++.+.
T Consensus        23 ~va~~l~~~G~~V~~lG   39 (157)
T 3bul_A           23 IVGVVLQCNNYEIVDLG   39 (157)
T ss_dssp             HHHHHHHTTTCEEEECC
T ss_pred             HHHHHHHHCCEEEEEEC
T ss_conf             99999986894799403


No 116
>>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} (A:)
Probab=32.70  E-value=29  Score=14.46  Aligned_cols=40  Identities=15%  Similarity=-0.021  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             86999999998798299942100000785200164475879998484
Q gi|255764510|r   11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      -+..+++.|+..|.++....+-+       ....++.+||.++|-||
T Consensus        15 ~A~~iae~l~~~g~~v~~~~~~~-------~~~~~l~~~d~iv~g~p   54 (138)
T 5nul_A           15 MAELIAKGIIESGKDVNTINVSD-------VNIDELLNEDILILGCS   54 (138)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEGGG-------CCHHHHTTCSEEEEEEC
T ss_pred             HHHHHHHHHHHCCCCCEECCCCC-------CCCCHHCCCCEEEEEEE
T ss_conf             99999999876599522011211-------34210113877999980


No 117
>>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} (A:1-185)
Probab=32.23  E-value=30  Score=14.41  Aligned_cols=59  Identities=10%  Similarity=0.065  Sum_probs=31.5

Q ss_pred             EEEECCHHHHHHHHHHHHHC-CCCEEEEC-----------CEEEECC--CC---CCCCCCCCCCCEEEEECHHHHH
Q ss_conf             89858968869999999987-98299942-----------1000007--85---2001644758799984846799
Q gi|255764510|r    3 IVITRPIKKALRTQEKIQKM-GYIPVMMP-----------LSYFIHD--RE---SVFLAMQQSYGAIAITSSESLS   61 (232)
Q Consensus         3 ilitRp~~~a~~~~~~L~~~-G~~~i~~P-----------li~i~~~--~~---~~~~~~~~~~d~iiftS~~av~   61 (232)
                      |+.++.-+-+...++.|.+. +++....+           ++++...  ..   +.......++|.+||-|+++-+
T Consensus         8 iv~S~~DpAS~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~d~ld~~~~~~~~~d~iiflSrH~s~   83 (185)
T 1yqe_A            8 VVCSESDTAGQNIKDNLLTFADFEEKDVGEFKLYLSDEFYIAETKERLIYADHIDEKLAKYIDFEEILFASRHSSK   83 (185)
T ss_dssp             EEEETTCHHHHHHHHHHTTSSCCEEEEETTEEEEECSSCEEEEESSCGGGCTTHHHHHTTTCCCSEEEEEEEEECT
T ss_pred             EEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCEEECCHHHHHHCCCCCCEEEEEECCCCC
T ss_conf             9985888466889999998649865777765314347589999356304404603443013798779998523457


No 118
>>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} (A:)
Probab=32.22  E-value=30  Score=14.41  Aligned_cols=97  Identities=9%  Similarity=0.113  Sum_probs=41.6

Q ss_pred             CCEEEEECCCC----CCCCHHHHHHHCCCEEEEEEEEEE---CCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCH
Q ss_conf             75389721567----562014689846982567688750---468999889998623783899-8078999999971354
Q gi|255764510|r  116 QKPLIYLGGKP----RNFHFEDYLIEHKIPLRVIDCYYS---QDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLP  187 (232)
Q Consensus       116 ~~~vl~~~g~~----~~~~l~~~L~~~g~~v~~~~vY~~---~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~  187 (232)
                      .++|.++....    ....+.+.|.+.|+.+.-+.....   +.-......+.++-..+|.++ +..+..+...++.+..
T Consensus        13 pk~iAViG~S~~~~~~g~~v~~~l~~~g~~v~~v~p~~~~~ei~G~~~~~sl~eip~~iD~v~i~~p~~~~~~~i~e~~~   92 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIA   92 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf             89399992079999838999999986898689852454412562062257544467621168995149999999999997


Q ss_pred             HHCCEEEE---ECCHHHHHHHHHCCCCE
Q ss_conf             40580399---71889999999769966
Q gi|255764510|r  188 AKISAAFL---CLSNNIASAIPASYKNV  212 (232)
Q Consensus       188 ~~~~~~~~---~ig~~tA~~~~~~g~~~  212 (232)
                      .+.+..++   .+++...+.+++.|...
T Consensus        93 ~g~k~~~~~~~~~~e~~~~~a~~~gi~i  120 (145)
T 2duw_A           93 IGAKTLWLQLGVINEQAAVLAREAGLSV  120 (145)
T ss_dssp             HTCCEEECCTTCCCHHHHHHHHTTTCEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCEE
T ss_conf             2997599524544199999999969989


No 119
>>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=32.21  E-value=30  Score=14.41  Aligned_cols=14  Identities=7%  Similarity=0.259  Sum_probs=8.1

Q ss_pred             CCCCCCEEEEECHH
Q ss_conf             44758799984846
Q gi|255764510|r   45 MQQSYGAIAITSSE   58 (232)
Q Consensus        45 ~~~~~d~iiftS~~   58 (232)
                      .+.++|.|||.||.
T Consensus        81 ~i~~aD~iV~~sP~   94 (191)
T 1t0i_A           81 IVNALDIIVFVTPQ   94 (191)
T ss_dssp             HHHTCSEEEEEEEC
T ss_pred             HHHHCCCCEEEEEE
T ss_conf             99838874899750


No 120
>>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} (A:)
Probab=31.21  E-value=31  Score=14.31  Aligned_cols=102  Identities=10%  Similarity=-0.083  Sum_probs=42.6

Q ss_pred             CCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHH-HHH-CCCCEEEEECHHHHHHHHHHCCHHH
Q ss_conf             27775389721567562014689846982567688750468999-88999-862-3783899807899999997135440
Q gi|255764510|r  113 FTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMK-NLL-QNADAILFYARSSVLYFFSLPLPAK  189 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~-~~~-~~~d~i~f~S~~~v~~~~~~~~~~~  189 (232)
                      ...+..|+-.+....-..+.....+.|.   ...+|-++..+.. ...+. .+. .++++.+++-++... +++.+..--
T Consensus       107 i~~~~~ILT~~~S~~V~~~l~~a~~~~~---~~~v~V~EsrP~~eG~~la~~L~~~gi~vt~i~ds~~~~-~m~~vd~Vl  182 (276)
T 1vb5_A          107 IDDGDVIITHSFSSTVLEIIRTAKERKK---RFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQMGL-FCREASIAI  182 (276)
T ss_dssp             CCTTEEEECCSCCHHHHHHHHHHHHTTC---CEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGHHH-HHTTCSEEE
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHHCCC---CEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHHH-HHHHCCEEE
T ss_conf             5999889971833899999999998799---669999737765565899999997198338955568999-966388799


Q ss_pred             CC--------EEEEECC-HHHHHHHHHCCCCEEEECCC
Q ss_conf             58--------0399718-89999999769966998799
Q gi|255764510|r  190 IS--------AAFLCLS-NNIASAIPASYKNVVTVACF  218 (232)
Q Consensus       190 ~~--------~~~~~ig-~~tA~~~~~~g~~~~~va~~  218 (232)
                      ..        ..+--+| ..+|-.++..+.....+++.
T Consensus       183 iGad~i~~nG~v~nk~Gt~~iAl~Ak~~~vPv~v~~e~  220 (276)
T 1vb5_A          183 VGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAET  220 (276)
T ss_dssp             ECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred             EEEEEEECCCCEEECCCHHHHHHHHHHCCCCEEEECCC
T ss_conf             85348963898433021778999998638972896045


No 121
>>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-98,A:233-276)
Probab=31.08  E-value=31  Score=14.30  Aligned_cols=64  Identities=6%  Similarity=0.091  Sum_probs=31.4

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHH-HHHCCCCCEECCC
Q ss_conf             9999999879829994210000078-52001644758799984846799988-6200136300041
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLP-ANFCRHTPIFAIG   77 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~-~~~~~~~~~~~vg   77 (232)
                      .+.+.++++|++++....-.-.... .......-...|+||+.+.+.-.-.. .....+.|+..++
T Consensus        20 gi~~~a~~~G~~l~i~~~~~~~~~~~~~i~~ll~~~vDGIIl~~~~~~~~~~~~l~~~~iPvV~id   85 (142)
T 2h0a_A           20 GIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTERPVVLVD   85 (142)
T ss_dssp             HHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC------CCSCSSCEEEES
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             999999986998999978998699999999998558987898413300678998765146521222


No 122
>>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} (A:)
Probab=31.08  E-value=31  Score=14.30  Aligned_cols=99  Identities=10%  Similarity=0.081  Sum_probs=51.5

Q ss_pred             CCCCEEEEECCCCC----CCCHHHHHHHCCCEEEEEE-EEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCH
Q ss_conf             77753897215675----6201468984698256768-8750468999889998623783899-8078999999971354
Q gi|255764510|r  114 TPQKPLIYLGGKPR----NFHFEDYLIEHKIPLRVID-CYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLP  187 (232)
Q Consensus       114 ~~~~~vl~~~g~~~----~~~l~~~L~~~g~~v~~~~-vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~  187 (232)
                      ...+++.++.....    ...+...|...|+.+.-+. -+....-......+.++-.++|.++ +..+..+...++.+..
T Consensus        12 ~~p~~iaVvGas~~~~~~g~~i~~~l~~~g~~v~~Vnp~~~~i~g~~~y~sl~di~~~vDl~vi~vp~~~~~~~v~ea~~   91 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE   91 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf             21577999832799998199999999978997999715543147973555641134332068998078999999999985


Q ss_pred             HHCCEEEE---ECCHHHHHHHHHCCCCE
Q ss_conf             40580399---71889999999769966
Q gi|255764510|r  188 AKISAAFL---CLSNNIASAIPASYKNV  212 (232)
Q Consensus       188 ~~~~~~~~---~ig~~tA~~~~~~g~~~  212 (232)
                      .+.+..++   .++....+.+++.|...
T Consensus        92 ~gi~~~~~~~~g~~e~~~~~a~~~gi~v  119 (138)
T 1y81_A           92 AGFKKLWFQPGAESEEIRRFLEKAGVEY  119 (138)
T ss_dssp             TTCCEEEECTTSCCHHHHHHHHHHTCEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCEE
T ss_conf             6998898506601899999999849989


No 123
>>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} (A:1-218)
Probab=30.99  E-value=31  Score=14.29  Aligned_cols=76  Identities=9%  Similarity=0.038  Sum_probs=44.7

Q ss_pred             EEEEECC-HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH-HHH------------HHHHH
Q ss_conf             3898589-688699999999879829994210000078520016447587999848467-999------------88620
Q gi|255764510|r    2 YIVITRP-IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES-LST------------LPANF   67 (232)
Q Consensus         2 ~ilitRp-~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a-v~~------------~~~~~   67 (232)
                      +|+|..- ......+.+.|++.|+++...|.-         ....+.++|.||++-..+ +..            +....
T Consensus         6 ~I~vid~~~~~~~~~~~~l~~~g~~~~vv~~~---------~~~~l~~~dgiIlpGg~~~~~~~~~~~~~~~~~~i~~~~   76 (218)
T 1jvn_A            6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSP---------KDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYI   76 (218)
T ss_dssp             EEEEECCSCSCCHHHHHHHHHTTCEEEEESSG---------GGCCSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCEEEEECC---------CHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHH
T ss_conf             89999799877999999999869976999687---------866884599899899997799999999878699999999


Q ss_pred             CCCCCEECCCHHHHHHHHH
Q ss_conf             0136300041589999764
Q gi|255764510|r   68 CRHTPIFAIGEASACLARQ   86 (232)
Q Consensus        68 ~~~~~~~~vg~~t~~~~~~   86 (232)
                      .+..|++.+..+-.-....
T Consensus        77 ~~~~PilGIC~G~Q~l~~~   95 (218)
T 1jvn_A           77 ESGKPIMGIXVGLQALFAG   95 (218)
T ss_dssp             HTTCCEEEEEHHHHTTEEE
T ss_pred             HCCCCEEEHHHHHHHHCCC
T ss_conf             8699499968979984548


No 124
>>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:1-100,A:232-251)
Probab=30.57  E-value=32  Score=14.24  Aligned_cols=16  Identities=13%  Similarity=0.038  Sum_probs=7.6

Q ss_pred             CCCEEEEECHHHHHHH
Q ss_conf             7838998078999999
Q gi|255764510|r  166 NADAILFYARSSVLYF  181 (232)
Q Consensus       166 ~~d~i~f~S~~~v~~~  181 (232)
                      ++|+|+|.+...-..+
T Consensus        64 ~vDGIIi~~~~~~~~~   79 (120)
T 3e61_A           64 NCTGMISTAFNENIIE   79 (120)
T ss_dssp             TCSEEEECGGGHHHHH
T ss_pred             CCCCEEECCCCHHHHH
T ss_conf             6642253143115578


No 125
>>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:110-207)
Probab=30.41  E-value=32  Score=14.23  Aligned_cols=69  Identities=13%  Similarity=0.087  Sum_probs=49.9

Q ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHH
Q ss_conf             12777538972156756201468984698256768875046899988999862-37838998078999999971
Q gi|255764510|r  112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSL  184 (232)
Q Consensus       112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~  184 (232)
                      ...++++|.+..|......+...|++.|..-....++..    ...+.+..+. +++|+++...+.......+.
T Consensus        18 ~DL~Gk~vgv~~gs~~~~~~~~~l~~~g~~~~~~~~~~~----~~~~~~~al~~g~vDa~~~~~p~~~~~~~~~   87 (98)
T 3e4r_A           18 ADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL----SPANARAAFAAGQVDAWAIWDPWYSALTLDG   87 (98)
T ss_dssp             GGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC----CHHHHHHHHHTTCCSEEEEETTHHHHHHHTT
T ss_pred             HHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC----CCHHHHHHHHHCCCCEEEECCHHHHHHHHCC
T ss_conf             452587210133320377777689984025444321015----8257778886124643884147999999739


No 126
>>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} (A:)
Probab=30.36  E-value=32  Score=14.22  Aligned_cols=72  Identities=10%  Similarity=0.040  Sum_probs=39.8

Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--------CCCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEE
Q ss_conf             9997641012235444545678999864220--------127775389721567562----0146898469825676887
Q gi|255764510|r   81 ACLARQKGFTQIFHGKDNSINLAKIIVEQKV--------LFTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCY  148 (232)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY  148 (232)
                      .+++.+.|.......+..+...++.+.+...        ......+|+++||.+.+.    .....|..+|+.|..+...
T Consensus        89 e~~~~~~Gls~~~LmE~Ag~~~a~~i~~~~~~~~~~~~~~~~~~~~V~vl~G~gnnGgdgl~~AR~L~~~G~~V~v~~~~  168 (306)
T 3d3j_A           89 LSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPN  168 (306)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC-----------CCCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             99999809988999999999999999998287632464546889979999899987299999999999779838999727


Q ss_pred             EECC
Q ss_conf             5046
Q gi|255764510|r  149 YSQD  152 (232)
Q Consensus       149 ~~~~  152 (232)
                      ....
T Consensus       169 ~~~~  172 (306)
T 3d3j_A          169 FVKM  172 (306)
T ss_dssp             CSSC
T ss_pred             CCCC
T ss_conf             8667


No 127
>>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} (A:)
Probab=29.86  E-value=33  Score=14.17  Aligned_cols=31  Identities=10%  Similarity=0.013  Sum_probs=25.1

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEECC
Q ss_conf             9389858968-869999999987982999421
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPL   31 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pl   31 (232)
                      ||||||=-.. =+..++..|.+.|.++...-.
T Consensus         1 MkIlVtGatGfIG~~l~~~L~~~G~~v~~~~r   32 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSERHEVIKVYNS   32 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTTTSCEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEECC
T ss_conf             98999899988999999999729989999778


No 128
>>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} (A:1-111,A:215-236)
Probab=29.18  E-value=34  Score=14.10  Aligned_cols=75  Identities=8%  Similarity=-0.027  Sum_probs=39.4

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCC--CCCCCCCCCCCCEEEEECHHHHHH--HHHHHCCCCCEEC
Q ss_conf             93898589688699999999879829994210000078--520016447587999848467999--8862001363000
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDR--ESVFLAMQQSYGAIAITSSESLST--LPANFCRHTPIFA   75 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~--~~~~~~~~~~~d~iiftS~~av~~--~~~~~~~~~~~~~   75 (232)
                      |||.+.=-..-+...+..+.+.|++.+..--.+.+..+  .+.+.....+.|.++..+++...+  ....+.++.++++
T Consensus         1 lkVgiIG~G~~g~~~~~~l~~~~~eivav~d~~~~~a~~~~~~e~l~~~~~DvVvi~t~~~~h~~~~~~al~~Gk~Vi~   79 (133)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIV   79 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEE
T ss_conf             9899997888999999999719988999997896404444898998258971999936863579999998724888999


No 129
>>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292)
Probab=29.07  E-value=34  Score=14.09  Aligned_cols=85  Identities=13%  Similarity=0.053  Sum_probs=53.2

Q ss_pred             CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH--HCCCCEEEEECHHHHHHHHHH
Q ss_conf             7775389721567562-------0146898469825676887504689998899986--237838998078999999971
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL--LQNADAILFYARSSVLYFFSL  184 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~i~f~S~~~v~~~~~~  184 (232)
                      .+..+|.++++.....       -+.+.++++|..+.....................  ..+++++++.|...+..++..
T Consensus        15 ~G~r~I~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~l~~   94 (130)
T 1jye_A           15 LGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRA   94 (130)
T ss_dssp             HTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH
T ss_conf             59966999947743228999999999999975998643434775177799999999735999836874888999999999


Q ss_pred             CCHHHC----CEEEEECC
Q ss_conf             354405----80399718
Q gi|255764510|r  185 PLPAKI----SAAFLCLS  198 (232)
Q Consensus       185 ~~~~~~----~~~~~~ig  198 (232)
                      +...+.    ++.++|+.
T Consensus        95 l~~~g~~ip~di~ivgfd  112 (130)
T 1jye_A           95 ITESGLRVGADISVVGYD  112 (130)
T ss_dssp             HHHTTCCBTTTBEEECSB
T ss_pred             HHHHCCCCCCCEEEEEEC
T ss_conf             998089789986999837


No 130
>>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} (A:)
Probab=28.97  E-value=34  Score=14.08  Aligned_cols=107  Identities=9%  Similarity=0.007  Sum_probs=47.1

Q ss_pred             CCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEE----CHHHHHHHHHHCCH
Q ss_conf             77538972156-756201468984698256768875046899988999862--378389980----78999999971354
Q gi|255764510|r  115 PQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFY----ARSSVLYFFSLPLP  187 (232)
Q Consensus       115 ~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~----S~~~v~~~~~~~~~  187 (232)
                      ...+|+++--+ ..+..+...|.+.|+.|...        ....+.+..+.  .++|.|+.=    --++++ +++.+..
T Consensus        14 ~~~rILiVdDd~~~~~~i~~~L~~~g~~v~~a--------~~g~~al~~~~~~~~~DliilD~~mP~~~G~e-l~~~ir~   84 (138)
T 2b4a_A           14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVH--------PSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFS-LLDIVKE   84 (138)
T ss_dssp             CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHTGGGGGSCSEEEEETTCTTSCHHH-HHHHHTT
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEC--------CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-HHHHHHH
T ss_conf             78879999699999999999999869989744--------99999999996469997999837777885799-9999997


Q ss_pred             HHCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf             4058039971889999999769966998799998899999861
Q gi|255764510|r  188 AKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL  230 (232)
Q Consensus       188 ~~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~  230 (232)
                      ....+.++.++..--+..+..+....++.+..+.+.|++.++.
T Consensus        85 ~~~~~pii~lTa~~~~~~~~~~~~~dyl~KP~~~~eL~a~V~~  127 (138)
T 2b4a_A           85 QTKQPSVLILTTGRHELIESSEHNLSYLQKPFAISELRAAIDY  127 (138)
T ss_dssp             SSSCCEEEEEESCC--CCCCSSSCEEEEESSCCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHCCCCCEEECCCCHHHHHHHHHH
T ss_conf             0998978999888539999852699889898999999999998


No 131
>>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:126-269)
Probab=28.86  E-value=34  Score=14.07  Aligned_cols=108  Identities=6%  Similarity=-0.050  Sum_probs=59.6

Q ss_pred             HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC-----------CCHHHHHHHHCCCCEEEE
Q ss_conf             998642201277753897215675620146898469825676887504689-----------998899986237838998
Q gi|255764510|r  104 KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA-----------YPETTMKNLLQNADAILF  172 (232)
Q Consensus       104 ~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-----------~~~~~~~~~~~~~d~i~f  172 (232)
                      ..+.+......+++++.++........+.+.|.+.|.+|.   +|.+.+.+           .......+.+.+.|.|+.
T Consensus        18 ~~~~~~~~~~l~g~~v~viG~G~iG~~~a~~l~~~g~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DiVi~   94 (144)
T 3d4o_A           18 XXAIQHTDFTIHGANVAVLGLGRVGXSVARKFAALGAKVK---VGARESDLLARIAEXGXEPFHISKAAQELRDVDVCIN   94 (144)
T ss_dssp             HHHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE---EEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEE
T ss_pred             HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE---EEECCHHHHHHHHHHCCEEEECCHHHHHHCCCCEEEE
T ss_conf             9999707967589999998926999999999985799899---9938847689999719878841205565478999998


Q ss_pred             ECHHH--HHHHHHHCCHHHCCEEEEECCH----HHHHHHHHCCCCEEEECC
Q ss_conf             07899--9999971354405803997188----999999976996699879
Q gi|255764510|r  173 YARSS--VLYFFSLPLPAKISAAFLCLSN----NIASAIPASYKNVVTVAC  217 (232)
Q Consensus       173 ~S~~~--v~~~~~~~~~~~~~~~~~~ig~----~tA~~~~~~g~~~~~va~  217 (232)
                      ..|..  .+..++.+++.   ..++-+|.    ...+.++..+-+.+.++.
T Consensus        95 ~~p~~~i~~~~~~~~k~g---~iiid~~~~~~~~~~~~~~~l~~~~i~~~~  142 (144)
T 3d4o_A           95 TIPALVVTANVLAEXPSH---TFVIDLASKPGGTDFRYAEKRGIKALLVPG  142 (144)
T ss_dssp             CCSSCCBCHHHHHHSCTT---CEEEECSSTTCSBCHHHHHHHTCEEEECCC
T ss_pred             CCCCCCCCHHHHHHCCCC---CEEEEECCCCCCCCHHHHHHHCCEEEEECC
T ss_conf             998644689999627999---589991899899898999971977999679


No 132
>>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* (A:)
Probab=28.84  E-value=34  Score=14.06  Aligned_cols=30  Identities=13%  Similarity=0.140  Sum_probs=24.6

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC
Q ss_conf             9389858968-86999999998798299942
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||||=-.. -+..++..|.+.|.+++..-
T Consensus         1 MkVlVtGatG~iG~~lv~~Ll~~g~~V~~~~   31 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLD   31 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             9699988878899999999997869899997


No 133
>>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} (A:)
Probab=28.64  E-value=34  Score=14.04  Aligned_cols=58  Identities=12%  Similarity=0.106  Sum_probs=27.8

Q ss_pred             CEEEEE----CCHHHHHHHHHHHHHC---CCCEEEECCEEEE--CC-------CCCC--CCCCCCCCCEEEEECHH
Q ss_conf             938985----8968869999999987---9829994210000--07-------8520--01644758799984846
Q gi|255764510|r    1 MYIVIT----RPIKKALRTQEKIQKM---GYIPVMMPLSYFI--HD-------RESV--FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~~~~L~~~---G~~~i~~Pli~i~--~~-------~~~~--~~~~~~~~d~iiftS~~   58 (232)
                      ||||+.    |+...+.++++.+.+.   |.++..+-+-+..  +.       .++.  ....+.++|.|||.||.
T Consensus         7 mkil~i~gS~r~~s~t~~l~~~~~~~~~~~~ev~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~i~~AD~iI~~sP~   82 (193)
T 1rtt_A            7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE   82 (193)
T ss_dssp             CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf             6799998989988889999999998647998899985445876400120249989999999985128867996641


No 134
>>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} (B:119-258)
Probab=28.52  E-value=34  Score=14.03  Aligned_cols=104  Identities=7%  Similarity=-0.041  Sum_probs=49.6

Q ss_pred             CCEEEEECCCCC-----CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECH-----HHHHHHHHH
Q ss_conf             753897215675-----6201468984698256768875046899988999862-37838998078-----999999971
Q gi|255764510|r  116 QKPLIYLGGKPR-----NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYAR-----SSVLYFFSL  184 (232)
Q Consensus       116 ~~~vl~~~g~~~-----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~-----~~v~~~~~~  184 (232)
                      ..++++.+-.+-     ...+...|+..|+.|..+-.-  .+.   .+....+. .++|.|.++..     ..+..+.+.
T Consensus         5 ~~~vl~~~~~gd~H~lG~~~va~~lr~~G~~V~~lG~~--~p~---~~l~~~~~~~~~d~V~lS~~~~~~~~~~~~~~~~   79 (140)
T 2i2x_B            5 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VPA---EEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDM   79 (140)
T ss_dssp             SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CCS---HHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCC--CCH---HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             43046631488676689999999999779908965888--987---9999999971788598652345325889999999


Q ss_pred             CCHHHCCEEEEECCHHHH-HHHHHCCCCEEEECCCC-CHHHHHH
Q ss_conf             354405803997188999-99997699669987999-9889999
Q gi|255764510|r  185 PLPAKISAAFLCLSNNIA-SAIPASYKNVVTVACFP-KETSLLK  226 (232)
Q Consensus       185 ~~~~~~~~~~~~ig~~tA-~~~~~~g~~~~~va~~p-~~~~ll~  226 (232)
                      +.....++.+++-|..+. +..++.|.  +.++... +...++.
T Consensus        80 lr~~~~~~~v~vGG~~~~~~~~~~~g~--d~~~~~~~~~~~~~~  121 (140)
T 2i2x_B           80 LLENGIKIPFACGGGAVNQDFVSQFAL--GVYGEEAADAPKIAD  121 (140)
T ss_dssp             HHTTTCCCCEEEESTTCCHHHHHTSTT--EEECSSTTHHHHHHH
T ss_pred             HHHCCCCCEEEEECCCCCHHHHHHHCC--CEECCCHHHHHHHHH
T ss_conf             984699973998898699999998298--847179999999999


No 135
>>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:1-106,A:224-276)
Probab=28.44  E-value=35  Score=14.02  Aligned_cols=65  Identities=12%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             HHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHH
Q ss_conf             99999987982999421000007-852001644758799984846799988620013630004158
Q gi|255764510|r   15 TQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEA   79 (232)
Q Consensus        15 ~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~   79 (232)
                      +...++++|+.++..+.-.-... ........-...|++|+.+...-.........+.|+..++..
T Consensus        29 i~~~~~~~gy~l~i~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~l~~~~iPvV~i~~~   94 (159)
T 3jy6_A           29 ISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDRE   94 (159)
T ss_dssp             HHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCC
T ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC
T ss_conf             999999869999999489998999999999995388853124620047788888628730002345


No 136
>>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} (A:)
Probab=28.15  E-value=35  Score=13.99  Aligned_cols=10  Identities=10%  Similarity=0.022  Sum_probs=3.1

Q ss_pred             HHCCCCEEEE
Q ss_conf             9769966998
Q gi|255764510|r  206 PASYKNVVTV  215 (232)
Q Consensus       206 ~~~g~~~~~v  215 (232)
                      ...|.+...+
T Consensus       202 ~~~~Irvn~i  211 (293)
T 3grk_A          202 GPQNIRVNAI  211 (293)
T ss_dssp             GGGTEEEEEE
T ss_pred             HHHCEEEEEE
T ss_conf             0519489997


No 137
>>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:1-144,A:335-393)
Probab=27.78  E-value=36  Score=13.95  Aligned_cols=11  Identities=18%  Similarity=0.196  Sum_probs=3.9

Q ss_pred             HHHHHCCCCEE
Q ss_conf             99998798299
Q gi|255764510|r   17 EKIQKMGYIPV   27 (232)
Q Consensus        17 ~~L~~~G~~~i   27 (232)
                      +.|+++|.+.+
T Consensus        61 ~~Le~~g~e~~   71 (203)
T 2nac_A           61 KYLESNGHTLV   71 (203)
T ss_dssp             HHHHHTTCEEE
T ss_pred             HHHHHCCCEEE
T ss_conf             99997898899


No 138
>>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Nostoc SP} PDB: 2klb_A (A:)
Probab=27.71  E-value=36  Score=13.94  Aligned_cols=44  Identities=16%  Similarity=0.058  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             6999999998798299942100000785200164475879998484
Q gi|255764510|r   12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      +..+++.|++.|.++...++-+..+.  +....++.+||.+||-|+
T Consensus        22 A~~i~~~l~~~g~~v~~~~~~~~~~~--~~~~~~~~~~d~ii~g~p   65 (159)
T 3fni_A           22 AQAIINGITKTGVGVDVVDLGAAVDL--QELRELVGRCTGLVIGXS   65 (159)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSSCCCH--HHHHHHHHTEEEEEEECC
T ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHHHCCEEEECCC
T ss_conf             99999999852992375423657866--889999975898997687


No 139
>>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} (A:183-237)
Probab=27.44  E-value=30  Score=14.35  Aligned_cols=17  Identities=24%  Similarity=0.403  Sum_probs=8.4

Q ss_pred             CCCHHHHHHHHHHCCCC
Q ss_conf             04158999976410122
Q gi|255764510|r   75 AIGEASACLARQKGFTQ   91 (232)
Q Consensus        75 ~vg~~t~~~~~~~~~~~   91 (232)
                      -+|+.|++.+.+.|...
T Consensus         3 GIG~~t~~kL~~~GI~t   19 (55)
T 1jx4_A            3 GIGNITAEKLKKLGINK   19 (55)
T ss_dssp             TCCHHHHHHHHTTTCCB
T ss_pred             CCCHHHHHHHHHHCCCC
T ss_conf             99667999999848968


No 140
>>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:1-100,A:298-333)
Probab=27.43  E-value=36  Score=13.91  Aligned_cols=53  Identities=9%  Similarity=0.006  Sum_probs=30.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHH-CCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH
Q ss_conf             938985896886999999998-7982999421000007852001644758799984846
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQK-MGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~-~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~   58 (232)
                      ||+.+.-+.+-.....+.|++ .+.+.+..+-...     +.......++|++++.+..
T Consensus         1 MKi~Vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~-----eel~~~i~dadaIiv~~~~   54 (136)
T 1dxy_A            1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLD-----ENTVEWAKGFDGINSLQTT   54 (136)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCC-----TTGGGGGTTCSEEEECCSS
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHCCCCEEEEECCC
T ss_conf             97999807775799999998875958998379998-----8999984899889994689


No 141
>>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:124-287)
Probab=27.40  E-value=36  Score=13.91  Aligned_cols=100  Identities=11%  Similarity=-0.039  Sum_probs=56.5

Q ss_pred             CEEEEECHH-HHHHHHHH-HCCCCCEECC---CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC
Q ss_conf             799984846-79998862-0013630004---158999976410122354445456789998642201277753897215
Q gi|255764510|r   50 GAIAITSSE-SLSTLPAN-FCRHTPIFAI---GEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGG  124 (232)
Q Consensus        50 d~iiftS~~-av~~~~~~-~~~~~~~~~v---g~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g  124 (232)
                      +.|+|+|.. |....... ...+..+.+.   -..+...+...|......+..+.....+.+...   .....++++++.
T Consensus         3 ~~i~~~~gt~a~~~~l~a~~~~Gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~---~~~~~~~v~~~~   79 (164)
T 2w8t_A            3 GAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRL---PKEPAKLVVLEG   79 (164)
T ss_dssp             EEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTS---CSSSCEEEEEES
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHC---CCCCCEEEEECC
T ss_conf             69995789999999999997269469962675470221632357616994678578999999844---346861687246


Q ss_pred             C-------CCCCCHHHHHHHCCCEEEEEEEEEECC
Q ss_conf             6-------756201468984698256768875046
Q gi|255764510|r  125 K-------PRNFHFEDYLIEHKIPLRVIDCYYSQD  152 (232)
Q Consensus       125 ~-------~~~~~l~~~L~~~g~~v~~~~vY~~~~  152 (232)
                      .       ...+.+.+..+++|..+..-..|..-.
T Consensus        80 ~~np~G~~~~~~~i~~~a~~~~~~li~D~~~~~~~  114 (164)
T 2w8t_A           80 VYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGF  114 (164)
T ss_dssp             EETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCC
T ss_conf             65787766879999999997495415433202442


No 142
>>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* (A:)
Probab=27.29  E-value=36  Score=13.90  Aligned_cols=58  Identities=3%  Similarity=-0.030  Sum_probs=31.4

Q ss_pred             CEEEEE----CCHHHHHHH----HHHH-HHCCCCEEEECCEEEECC--------CCCC--CCCCCCCCCEEEEECHH
Q ss_conf             938985----896886999----9999-987982999421000007--------8520--01644758799984846
Q gi|255764510|r    1 MYIVIT----RPIKKALRT----QEKI-QKMGYIPVMMPLSYFIHD--------RESV--FLAMQQSYGAIAITSSE   58 (232)
Q Consensus         1 M~ilit----Rp~~~a~~~----~~~L-~~~G~~~i~~Pli~i~~~--------~~~~--~~~~~~~~d~iiftS~~   58 (232)
                      ||||+.    ||.....++    ++.+ +..|.++-.+-+-+....        +++.  ....+..+|.|||.||.
T Consensus         3 mkilvI~gS~r~~s~t~~l~~~~~~~l~~~~g~~v~~i~l~~~~~~~~~~~~~~~d~~~~~~e~i~~AD~iI~~sP~   79 (197)
T 2vzf_A            3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI   79 (197)
T ss_dssp             EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred             CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECH
T ss_conf             70999989899676799999999998776559869999734577765423568988999999999709979998301


No 143
>>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosphatase, mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A (A:1-233)
Probab=27.21  E-value=36  Score=13.89  Aligned_cols=69  Identities=9%  Similarity=0.016  Sum_probs=39.7

Q ss_pred             CEEEEECC----HHHHHHHHHHHHHCCCCEEEECCEEEECCC------CCCCCCCCCCCCEEEEEC-H-HHHHHHHHHHC
Q ss_conf             93898589----688699999999879829994210000078------520016447587999848-4-67999886200
Q gi|255764510|r    1 MYIVITRP----IKKALRTQEKIQKMGYIPVMMPLSYFIHDR------ESVFLAMQQSYGAIAITS-S-ESLSTLPANFC   68 (232)
Q Consensus         1 M~ilitRp----~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~------~~~~~~~~~~~d~iiftS-~-~av~~~~~~~~   68 (232)
                      ||||||=.    .+.-..|++.|++.|--.+..|--+-.-..      ......+..+..+..+.. | -.|......+.
T Consensus         2 M~ILiTNDDGi~s~Gl~~L~~al~~~g~V~VvAP~~~qSg~g~ait~~~pl~v~~~~~~~~~~v~GTPaDcv~~al~~l~   81 (233)
T 2v4n_A            2 MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALM   81 (233)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTTTSEEEEEEESSCCTTCTTCCCCSSCCEEEECTTSCEEEETCCHHHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHCCCC
T ss_conf             67999707988988899999999866998999229998656146568998168995482589963882678988641015


Q ss_pred             C
Q ss_conf             1
Q gi|255764510|r   69 R   69 (232)
Q Consensus        69 ~   69 (232)
                      .
T Consensus        82 ~   82 (233)
T 2v4n_A           82 R   82 (233)
T ss_dssp             S
T ss_pred             C
T ss_conf             7


No 144
>>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293)
Probab=26.98  E-value=37  Score=13.86  Aligned_cols=86  Identities=10%  Similarity=0.102  Sum_probs=56.4

Q ss_pred             CCCCEEEEECCCCCCCC------HHHHHHHCCCEEEEEEEEEECCCCCC--HHHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             77753897215675620------14689846982567688750468999--88999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH------FEDYLIEHKIPLRVIDCYYSQDIAYP--ETTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~------l~~~L~~~g~~v~~~~vY~~~~~~~~--~~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+.+++.++.+......      +.+.+.+.|..+.....+........  ......++   ..+++++..|-..+..++
T Consensus        15 ~G~r~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~   94 (132)
T 3h5o_A           15 RGKRRIGFLGAQLDERVXKRLDGYRAALDAADCRDAGLEWLDPQPSSXQXGADXLDRALAERPDCDALFCCNDDLAIGAL   94 (132)
T ss_dssp             TTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH
T ss_pred             CCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH
T ss_conf             59970878640266542200025677776304554310000246236778999999999549998389972645666543


Q ss_pred             HHCCHHHC----CEEEEECCH
Q ss_conf             71354405----803997188
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSN  199 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~  199 (232)
                      +.+...+.    ++.+++++.
T Consensus        95 ~~l~~~g~~vP~di~ii~fd~  115 (132)
T 3h5o_A           95 ARSQQLGIAVPERLAIAGFND  115 (132)
T ss_dssp             HHHHHTTCCTTTTCEEECSBC
T ss_pred             HHHHHCCCCCCCCEEEEEECC
T ss_conf             468763998898679999898


No 145
>>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} (A:)
Probab=26.91  E-value=37  Score=13.86  Aligned_cols=30  Identities=7%  Similarity=0.045  Sum_probs=24.6

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC
Q ss_conf             9389858968-86999999998798299942
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||||=-.. -+..++..|.+.|++++..-
T Consensus         3 mkiLItGatGfiG~~l~~~L~~~g~~V~~~~   33 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLR   33 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             8869998921999999999997859899997


No 146
>>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:112-249)
Probab=26.85  E-value=37  Score=13.85  Aligned_cols=102  Identities=14%  Similarity=0.086  Sum_probs=62.8

Q ss_pred             CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHH
Q ss_conf             7775389721567562-------01468984698256768875046899988999862---3783899807899999997
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFS  183 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~  183 (232)
                      .+..+|.++.|.....       -+.+.|++++.......+|.....+........++   .++++++..+...+...++
T Consensus        22 ~~~~~i~~i~g~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~  101 (138)
T 3l6u_A           22 RSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVXRQVIDSGIPFDAVYCHNDDIAXGVLE  101 (138)
T ss_dssp             CSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH
T ss_conf             88750899848998768999998534445543885300110012107889999986321478845999778189999999


Q ss_pred             HCCHHHC-CEEEEEC--CHHHHHHHHHCCCCEEEEC
Q ss_conf             1354405-8039971--8899999997699669987
Q gi|255764510|r  184 LPLPAKI-SAAFLCL--SNNIASAIPASYKNVVTVA  216 (232)
Q Consensus       184 ~~~~~~~-~~~~~~i--g~~tA~~~~~~g~~~~~va  216 (232)
                      .+...+. ++.++++  .+.+...+ ..|.....|.
T Consensus       102 al~~~g~~di~ivg~D~~~~~~~~i-~~g~~~ttV~  136 (138)
T 3l6u_A          102 ALKKAKISGKIVVGIDGNRAILEAV-DXKSXDATVV  136 (138)
T ss_dssp             HHHHTTCCCCEEEEEECCHHHHHHH-HTTSSCEEEE
T ss_pred             HHHHCCCCCCEEEEEECCHHHHHHH-HCCCCEEEEE
T ss_conf             9997699999799997956999999-8299759995


No 147
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:1-108,A:240-290)
Probab=26.82  E-value=37  Score=13.85  Aligned_cols=46  Identities=17%  Similarity=0.216  Sum_probs=18.0

Q ss_pred             HHHHHHHCCCCEEEECCEEEECC--CCCCCCCCCCCCCEEEEECHHHH
Q ss_conf             99999987982999421000007--85200164475879998484679
Q gi|255764510|r   15 TQEKIQKMGYIPVMMPLSYFIHD--RESVFLAMQQSYGAIAITSSESL   60 (232)
Q Consensus        15 ~~~~L~~~G~~~i~~Pli~i~~~--~~~~~~~~~~~~d~iiftS~~av   60 (232)
                      +...++++|+.++..+..+-.+-  ........-...|++|+.+...-
T Consensus        30 Ie~aa~~~Gy~lil~~s~~~d~e~q~~~i~~li~~~vDGIIi~~~~~~   77 (159)
T 3clk_A           30 IQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVXGILLLSIALT   77 (159)
T ss_dssp             HHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC--
T ss_pred             HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH
T ss_conf             999999869989999689999999999999998569546752000013


No 148
>>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} (B:1-38)
Probab=26.51  E-value=33  Score=14.15  Aligned_cols=24  Identities=17%  Similarity=0.153  Sum_probs=17.9

Q ss_pred             ECCHHHHH-HHHHHHHHCCCCEEEE
Q ss_conf             58968869-9999999879829994
Q gi|255764510|r    6 TRPIKKAL-RTQEKIQKMGYIPVMM   29 (232)
Q Consensus         6 tRp~~~a~-~~~~~L~~~G~~~i~~   29 (232)
                      |||.-|+. -++-.|.+.|+.+...
T Consensus        12 TRP~lQGaRLTa~EL~~~gIp~tlI   36 (38)
T 1w2w_B           12 TRPYNQGSRLTAYELVYDKIPSTLI   36 (38)
T ss_dssp             CTTTTHHHHTHHHHHHHHTCCBEEB
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             9812477999999999879987999


No 149
>>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} (A:303-450)
Probab=26.48  E-value=38  Score=13.81  Aligned_cols=66  Identities=15%  Similarity=0.094  Sum_probs=38.0

Q ss_pred             HCCCCCCEEEEECCC----------CCCCCHHHHHHHCCCEEEEEEEEEECCCC-------CCHHHHHHHHCCCCEEEEE
Q ss_conf             012777538972156----------75620146898469825676887504689-------9988999862378389980
Q gi|255764510|r  111 VLFTPQKPLIYLGGK----------PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-------YPETTMKNLLQNADAILFY  173 (232)
Q Consensus       111 ~~~~~~~~vl~~~g~----------~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-------~~~~~~~~~~~~~d~i~f~  173 (232)
                      .....+++|.++.-.          ...-.+.+.|...|..|..+..|-.....       .....+.+++++.|+|++.
T Consensus        11 g~~l~~~~V~ilGl~fK~~t~D~R~S~~~~l~~~L~~~G~~V~~~Dp~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ivi~   90 (148)
T 3gg2_A           11 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV   90 (148)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             HCCCCCCHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCEEEECCHHHHHCCCCEEEEE
T ss_conf             20123123544163147741010366047889999974787799999788789998278827838999997069889994


Q ss_pred             CHH
Q ss_conf             789
Q gi|255764510|r  174 ARS  176 (232)
Q Consensus       174 S~~  176 (232)
                      .+.
T Consensus        91 ~~~   93 (148)
T 3gg2_A           91 TEW   93 (148)
T ss_dssp             SCC
T ss_pred             ECC
T ss_conf             088


No 150
>>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} (D:)
Probab=26.40  E-value=38  Score=13.80  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHH------------HHHHC
Q ss_conf             938985896886999999998798299942100000785200164475879998484679998------------86200
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTL------------PANFC   68 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~------------~~~~~   68 (232)
                      |+|.|-.=-..-..+.+.|++.|++++.++..           .++.++|.||++-.......            .....
T Consensus        21 ~~Iav~~~~~~~~~~~~~l~~~G~~~~~~~~~-----------~~l~~~D~iil~GG~~~~~~~~~~~~~~~~~i~~~~~   89 (208)
T 2iss_D           21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLP-----------EQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERIN   89 (208)
T ss_dssp             CEEEEECSSSCHHHHHHHHHHTTCEEEEECSG-----------GGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCEEEECCH-----------HHHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             89999967998999999999889989998998-----------9983089899978868988766542011067899986


Q ss_pred             CCCCEECCCHHHHHHHHHHCCC
Q ss_conf             1363000415899997641012
Q gi|255764510|r   69 RHTPIFAIGEASACLARQKGFT   90 (232)
Q Consensus        69 ~~~~~~~vg~~t~~~~~~~~~~   90 (232)
                      ...|++.+-.+-.-.....+..
T Consensus        90 ~g~PilGiC~G~Q~L~~~~g~~  111 (208)
T 2iss_D           90 NGLPVFATCAGVILLAKRIKNY  111 (208)
T ss_dssp             TTCCEEEETHHHHHHEEEEC--
T ss_pred             CCCEEEEECCCEEEEEEECCCC
T ss_conf             5965999636601466633785


No 151
>>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108)
Probab=26.37  E-value=38  Score=13.80  Aligned_cols=88  Identities=8%  Similarity=-0.036  Sum_probs=54.8

Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEE
Q ss_conf             77753897215675620146898469825676887504689998899986237838998078999999971354405803
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAA  193 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~  193 (232)
                      +..++++++.|....--+....++.|+.+  +.+| ..+  +.+..     .-.|..++.|..-.+.+.+.....+.+..
T Consensus        17 ~~~~kilIlG~Gqla~~l~~aa~~lG~~~--~~~d-~~~--~~pa~-----~~ad~~~~~~~~D~~~i~~~a~~~~~D~I   86 (108)
T 2dwc_A           17 DSAQKILLLGSGELGKEIAIEAQRLGVEV--VAVD-RYA--NAPAM-----QVAHRSYVGNMMDKDFLWSVVEREKPDAI   86 (108)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHHTTCEE--EEEE-SST--TCHHH-----HHSSEEEESCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEE--EEEE-CCC--CCCHH-----HHCCEEEECCCCCHHHHHHHHHHCCCCEE
T ss_conf             99889999997899999999999879989--9997-989--88577-----74565897899999999999987399999


Q ss_pred             EE---ECCHHHHHHHHHCCCC
Q ss_conf             99---7188999999976996
Q gi|255764510|r  194 FL---CLSNNIASAIPASYKN  211 (232)
Q Consensus       194 ~~---~ig~~tA~~~~~~g~~  211 (232)
                      ..   -+...+++.+++.|..
T Consensus        87 ~~e~e~i~~~~~~~~e~~Gi~  107 (108)
T 2dwc_A           87 IPEIEAINLDALFEFEKDGYF  107 (108)
T ss_dssp             EECSSCSCHHHHHHHHHTTCC
T ss_pred             EECCCCCCHHHHHHHHHHCCC
T ss_conf             968887578999999861662


No 152
>>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP, hydrolase; 2.05A {Thermus thermophilus HB8} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A (A:)
Probab=26.28  E-value=38  Score=13.79  Aligned_cols=33  Identities=21%  Similarity=0.197  Sum_probs=26.0

Q ss_pred             CEEEEECC----HHHHHHHHHHHHHCCCCEEEECCEE
Q ss_conf             93898589----6886999999998798299942100
Q gi|255764510|r    1 MYIVITRP----IKKALRTQEKIQKMGYIPVMMPLSY   33 (232)
Q Consensus         1 M~ilitRp----~~~a~~~~~~L~~~G~~~i~~Pli~   33 (232)
                      ||||||=.    .+.-..+++.|.+.|--.+..|.-+
T Consensus         1 M~ILiTNDDGi~a~Gi~~L~~aL~~~g~V~VvAP~~~   37 (244)
T 2e6c_A            1 MRILVTNDDGIYSPGLWALAEAASQFGEVFVAAPDTE   37 (244)
T ss_dssp             CEEEEECSSCTTCHHHHHHHHHHTTTSEEEEEEECSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             9599972799897669999999986699899951899


No 153
>>3eyw_A C-terminal domain of glutathione-regulated potassium-efflux system protein KEFC fused...; KTN, RCK, K+ channel, K+ transport, K+ efflux; HET: FMN NAD; 2.40A {Escherichia coli K12} (A:1-123)
Probab=26.05  E-value=38  Score=13.76  Aligned_cols=100  Identities=8%  Similarity=-0.115  Sum_probs=54.1

Q ss_pred             CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE------------CC-CCCCHHHHHH-HHCCCCEEEEECHHH--HH
Q ss_conf             75389721567562014689846982567688750------------46-8999889998-623783899807899--99
Q gi|255764510|r  116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS------------QD-IAYPETTMKN-LLQNADAILFYARSS--VL  179 (232)
Q Consensus       116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~------------~~-~~~~~~~~~~-~~~~~d~i~f~S~~~--v~  179 (232)
                      .++++++.+......+.+.|.+.|+.|.-+.--..            .. .......... .+.+.|.|+++.+..  ..
T Consensus         4 ~~~v~IiG~G~~G~~ia~~L~~~G~~V~v~d~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~~~~ad~vi~~~~~~~~~~   83 (123)
T 3eyw_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (123)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCCCEESCTTCHHHHHHHTTTTCSEEEECCSSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHH
T ss_conf             89899989888999999999968998899989999999999769909995389999998569764899999719889999


Q ss_pred             HHHHHCCHHHCC--EEEEECCHHHHHHHHHCCCCEEEE
Q ss_conf             999713544058--039971889999999769966998
Q gi|255764510|r  180 YFFSLPLPAKIS--AAFLCLSNNIASAIPASYKNVVTV  215 (232)
Q Consensus       180 ~~~~~~~~~~~~--~~~~~ig~~tA~~~~~~g~~~~~v  215 (232)
                      .......+....  +...+-++.-.+.+++.|...++-
T Consensus        84 ~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~vi~  121 (123)
T 3eyw_A           84 QLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPER  121 (123)
T ss_dssp             HHHHHHHHHCTTSEEEEEESSHHHHHHHHHTTCSCCEE
T ss_pred             HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEC
T ss_conf             99999999789983999976999999999779899989


No 154
>>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A (A:)
Probab=25.90  E-value=38  Score=13.74  Aligned_cols=30  Identities=13%  Similarity=0.239  Sum_probs=16.3

Q ss_pred             HHHHHCCCCEEEEECH-------HHHHHHHHHCCHHH
Q ss_conf             9986237838998078-------99999997135440
Q gi|255764510|r  160 MKNLLQNADAILFYAR-------SSVLYFFSLPLPAK  189 (232)
Q Consensus       160 ~~~~~~~~d~i~f~S~-------~~v~~~~~~~~~~~  189 (232)
                      +.+.+...|.|+|.||       ...+.|++.+....
T Consensus        79 ~~~~~~~AD~iV~~sP~y~~~~p~~lK~~iDr~~~~~  115 (191)
T 3k1y_A           79 ITSALSASDGLVVATPVFKASYTGLFKXFFDILDTDA  115 (191)
T ss_dssp             HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTT
T ss_pred             HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf             9999995898589654202473899999999725422


No 155
>>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} (A:)
Probab=25.88  E-value=39  Score=13.74  Aligned_cols=30  Identities=13%  Similarity=0.125  Sum_probs=24.4

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC
Q ss_conf             9389858968-86999999998798299942
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||||=... =+..++..|.+.|.+++..=
T Consensus         1 MkVLVTGatGfiG~~lv~~Ll~~g~~v~~~~   31 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf             9799989887899999999997849899997


No 156
>>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129} (A:1-344)
Probab=25.84  E-value=39  Score=13.74  Aligned_cols=15  Identities=13%  Similarity=0.246  Sum_probs=6.7

Q ss_pred             HHHHHHHHHHHCCCC
Q ss_conf             869999999987982
Q gi|255764510|r   11 KALRTQEKIQKMGYI   25 (232)
Q Consensus        11 ~a~~~~~~L~~~G~~   25 (232)
                      |+....++..+.|..
T Consensus        18 Qs~~I~eRi~~f~~K   32 (344)
T 3bh1_A           18 QSQHIRERREALGGK   32 (344)
T ss_dssp             HHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHHHHHCCE
T ss_conf             999999999861888


No 157
>>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:1-101,A:231-280)
Probab=25.46  E-value=39  Score=13.69  Aligned_cols=53  Identities=13%  Similarity=0.096  Sum_probs=33.2

Q ss_pred             HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH
Q ss_conf             99999999879829994210000078520016447587999848467999886
Q gi|255764510|r   13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPA   65 (232)
Q Consensus        13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~   65 (232)
                      ..+...+++.|+.++..+.-.-...........-...|++|+.+...-+.+..
T Consensus        25 ~gI~~aa~~~Gy~vii~~s~~~~~e~~~i~~ll~~~VDGIIi~~~~~~~~L~~   77 (151)
T 3gyb_A           25 QSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSXRPDGIIIAQDIPDFTVPD   77 (151)
T ss_dssp             HHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESCC-------
T ss_pred             HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHC
T ss_conf             99999999869989999689998999999999971985355125301266641


No 158
>>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 intergenic region; yeast hypothetical protein, structural genomics, selenomethionine, PSI; 1.94A {Saccharomyces cerevisiae} (A:)
Probab=25.25  E-value=37  Score=13.86  Aligned_cols=37  Identities=16%  Similarity=-0.052  Sum_probs=24.7

Q ss_pred             CCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEEC
Q ss_conf             775389721567562----0146898469825676887504
Q gi|255764510|r  115 PQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQ  151 (232)
Q Consensus       115 ~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~  151 (232)
                      ++++|+++||.+.+.    .+...|.++|++|.-+.+-...
T Consensus        57 ~~~~v~vl~G~GnNGGDgl~~Ar~L~~~G~~V~v~~~~~~~   97 (246)
T 1jzt_A           57 KGKHVFVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSE   97 (246)
T ss_dssp             HTCEEEEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             79849999889998477999999999779847999847865


No 159
>>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.20A {Homo sapiens} (A:)
Probab=25.24  E-value=40  Score=13.67  Aligned_cols=40  Identities=10%  Similarity=0.088  Sum_probs=27.9

Q ss_pred             CCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEECCC
Q ss_conf             7775389721567562----014689846982567688750468
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQDI  153 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~~~  153 (232)
                      ...++|+++||.+.+.    .....|..+|++|.-+.++.....
T Consensus        83 ~~~~~v~il~G~GnNGGDgl~~Ar~L~~~G~~V~v~~~~~~~~~  126 (259)
T 3d3k_A           83 HQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKML  126 (259)
T ss_dssp             -CCCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCBCSSCC
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             89997999989998839999999999978995999956885679


No 160
>>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:1-118,A:302-333)
Probab=25.05  E-value=40  Score=13.65  Aligned_cols=97  Identities=9%  Similarity=-0.098  Sum_probs=50.3

Q ss_pred             EEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-HHHHHHHHCCHHHCCEEEEE
Q ss_conf             38972156756201468984698256768875046899988999862378389980789-99999971354405803997
Q gi|255764510|r  118 PLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-SVLYFFSLPLPAKISAAFLC  196 (232)
Q Consensus       118 ~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-~v~~~~~~~~~~~~~~~~~~  196 (232)
                      ++.++.-....++..+.|++.+ .+    +|. .......+.+.+.+++.|+|+.++.. --..+++..+..+.   +.+
T Consensus        23 k~~Vlv~~~~~~~~~~~L~~~~-~v----i~~-~~~~~~~~e~~~~l~~~d~Ii~~~~~~i~~e~L~~~p~LK~---I~~   93 (150)
T 3ba1_A           23 AIGVLMMCPMSTYLEQELDKRF-KL----FRY-WTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEI---VSS   93 (150)
T ss_dssp             CCEEEECSCCCHHHHHHHHHHS-EE----EEG-GGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCE---EEE
T ss_pred             CCCEEEECCCCHHHHHHHHCCC-CE----EEC-CCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCEE---EEE
T ss_conf             8518984699989999996676-79----963-78999899999875798799989999979999960855708---997


Q ss_pred             C--CH--HHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             1--88--999999976996699879999889
Q gi|255764510|r  197 L--SN--NIASAIPASYKNVVTVACFPKETS  223 (232)
Q Consensus       197 i--g~--~tA~~~~~~g~~~~~va~~p~~~~  223 (232)
                      .  |-  -=-+++++.|+....++.+.+.|.
T Consensus        94 ~g~G~D~IDl~aa~~~GI~V~N~pg~~~~~~  124 (150)
T 3ba1_A           94 FSVGLDKVDLIKCEEKGVRVTNTPDSGTVET  124 (150)
T ss_dssp             SSSCCTTBCHHHHHHHTCEEECCCSTCSHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             1887553255310135521136898185999


No 161
>>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:115-246)
Probab=25.04  E-value=40  Score=13.65  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=55.8

Q ss_pred             CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             7775389721567562-------0146898469825676887504689998-8999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+..++.++.+.....       -+.+.+.++|..++...++......... ......+   ..+++|+.+|-..+..++
T Consensus        15 ~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~   94 (132)
T 3hcw_A           15 QGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAIL   94 (132)
T ss_dssp             HCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             13223322455543201455568899999874985110114554035666655554320357776422222201333335


Q ss_pred             HHCCHHHC----CEEEEECCHH
Q ss_conf             71354405----8039971889
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~~  200 (232)
                      +.+...+.    ++.+++++..
T Consensus        95 ~~l~~~g~~iP~di~ii~fd~~  116 (132)
T 3hcw_A           95 SVLYELNIEIPKDVMTATFNDS  116 (132)
T ss_dssp             HHHHHTTCCTTTTEEEEEECCS
T ss_pred             HHHHHCCCCCCCCCCCCCCCCH
T ss_conf             5442033223221002256887


No 162
>>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri 2a str} (A:1-241)
Probab=24.78  E-value=40  Score=13.62  Aligned_cols=74  Identities=9%  Similarity=-0.028  Sum_probs=48.2

Q ss_pred             CCCCEEEEECCC---CC-----CCCHHHHHHHCCCEEEEEEEEEECCCCCC-------HHHHHHHHCCCCEEEEECHH--
Q ss_conf             777538972156---75-----62014689846982567688750468999-------88999862378389980789--
Q gi|255764510|r  114 TPQKPLIYLGGK---PR-----NFHFEDYLIEHKIPLRVIDCYYSQDIAYP-------ETTMKNLLQNADAILFYARS--  176 (232)
Q Consensus       114 ~~~~~vl~~~g~---~~-----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~-------~~~~~~~~~~~d~i~f~S~~--  176 (232)
                      ....+++++.|.   .+     ...+.+.|.+.|..++.+.+|........       ...+...+...|+|+|.||.  
T Consensus        56 ~~~~kilii~gS~~~~g~T~~la~~i~~~l~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aD~iv~~sP~y~  135 (241)
T 2fzv_A           56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH  135 (241)
T ss_dssp             CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET
T ss_pred             CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCHHC
T ss_conf             99985999959899888799999999999987799699971078999997556787899999999984765389655003


Q ss_pred             -----HHHHHHHHCCH
Q ss_conf             -----99999971354
Q gi|255764510|r  177 -----SVLYFFSLPLP  187 (232)
Q Consensus       177 -----~v~~~~~~~~~  187 (232)
                           .+..|++.+..
T Consensus       136 ~~~~~~lK~~iD~l~~  151 (241)
T 2fzv_A          136 GQITSVMKAQIDHLPL  151 (241)
T ss_dssp             TEECHHHHHHHHHSCS
T ss_pred             CCCHHHHHHHHHHCCC
T ss_conf             6760999999985175


No 163
>>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:118-235)
Probab=24.70  E-value=41  Score=13.61  Aligned_cols=87  Identities=10%  Similarity=0.040  Sum_probs=52.6

Q ss_pred             CCCCCEEEEECCCC--C----CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCC
Q ss_conf             27775389721567--5----62014689846982567688750468999889998623783899807899999997135
Q gi|255764510|r  113 FTPQKPLIYLGGKP--R----NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPL  186 (232)
Q Consensus       113 ~~~~~~vl~~~g~~--~----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~  186 (232)
                      .+.-++|.++....  .    .+.+.+...+.|+.+....+-...   +....+....+++|++++.+.+.+..-.+.+.
T Consensus        13 ~P~~k~vgvly~~~e~~s~~~~~~l~~~a~~~Gi~l~~~~v~~~~---di~~~~~~~~~~~dai~~~~d~~v~s~~~~i~   89 (118)
T 3lft_A           13 TPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTN---EIASTVTVXTSKVDAIWVPIDNTIASGFPTVV   89 (118)
T ss_dssp             CTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESSGG---GHHHHHHHHTTTCSEEEECSCHHHHHTHHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH---HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             878864689669753129999999998666417568750466679---99999983678861999738706888999999


Q ss_pred             HHH--CCEEEEECCHHHH
Q ss_conf             440--5803997188999
Q gi|255764510|r  187 PAK--ISAAFLCLSNNIA  202 (232)
Q Consensus       187 ~~~--~~~~~~~ig~~tA  202 (232)
                      ...  .++..+|.++.-.
T Consensus        90 ~~a~~~~iPv~~~~~~~v  107 (118)
T 3lft_A           90 SSNQSSKKPIYPSATAXV  107 (118)
T ss_dssp             HHTTTTCCCEEESSHHHH
T ss_pred             HHHCCCCCCEEEEEHHHH
T ss_conf             852024786786313442


No 164
>>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} (A:1-61,A:245-255)
Probab=24.55  E-value=41  Score=13.59  Aligned_cols=27  Identities=11%  Similarity=0.011  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHCCCCEEEECCEEEECC
Q ss_conf             869999999987982999421000007
Q gi|255764510|r   11 KALRTQEKIQKMGYIPVMMPLSYFIHD   37 (232)
Q Consensus        11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~   37 (232)
                      |-..+.+.|++.|++++.+|..+--|.
T Consensus        35 QH~~Yv~aLr~lGl~V~eLpa~E~~PD   61 (72)
T 1h70_A           35 QHNAYIRALQTCDVDITLLPPDERFPD   61 (72)
T ss_dssp             HHHHHHHHHTTSSCEEEEECCCTTCTT
T ss_pred             HHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             999999999986999999457777866


No 165
>>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265)
Probab=24.50  E-value=37  Score=13.81  Aligned_cols=10  Identities=10%  Similarity=0.464  Sum_probs=4.2

Q ss_pred             CCCEEEEECH
Q ss_conf             7838998078
Q gi|255764510|r  166 NADAILFYAR  175 (232)
Q Consensus       166 ~~d~i~f~S~  175 (232)
                      ++|++++.+.
T Consensus        67 ~vDGiIi~~~   76 (132)
T 2rgy_A           67 DCDGVVVISH   76 (132)
T ss_dssp             TCSEEEECCS
T ss_pred             CCCEEEEECC
T ss_conf             9998985223


No 166
>>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:1-102,A:300-333)
Probab=24.14  E-value=42  Score=13.54  Aligned_cols=54  Identities=4%  Similarity=-0.154  Sum_probs=35.3

Q ss_pred             CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             938985896886999999998798299942100000785200164475879998484
Q gi|255764510|r    1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus         1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      ||+.+.-+.+-.....+.|++.|........-.   .........+.++|++++.+.
T Consensus         2 mK~~Vl~~~~~~~~~~~~L~~~~~~~~v~~~~~---~~~eel~~~i~~ad~ii~~~~   55 (136)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK---LLTPETVALAKGADGVVVYQQ   55 (136)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSS---CCCTTTGGGGTTCSEEEECCS
T ss_pred             CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCC---CCCHHHHHHHCCCCEEEEECC
T ss_conf             779998258513999999997689979997899---999899998389989999379


No 167
>>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (A:565-727)
Probab=24.14  E-value=42  Score=13.54  Aligned_cols=112  Identities=2%  Similarity=-0.213  Sum_probs=61.9

Q ss_pred             HHCCCCCCEEEEECCCCC-----CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEECH--HHHH-
Q ss_conf             201277753897215675-----6201468984698256768875046899988999862--37838998078--9999-
Q gi|255764510|r  110 KVLFTPQKPLIYLGGKPR-----NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYAR--SSVL-  179 (232)
Q Consensus       110 ~~~~~~~~~vl~~~g~~~-----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S~--~~v~-  179 (232)
                      ........+|++.+...-     ...+...|+..|+.|..+-      ...+.+.+....  .++|.|.+++.  .... 
T Consensus        26 ~~~~~~~~~vl~~~~~~d~h~lg~~~ia~~l~~~G~evi~lg------~~~~~e~~~~~~~~~~~d~V~iS~~~~~~~~~   99 (163)
T 1req_A           26 EQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGP------LFQTPEETARQAVEADVHVVGVSSLAGGHLTL   99 (163)
T ss_dssp             HHHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECC------TTBCHHHHHHHHHHTTCSEEEEEECSSCHHHH
T ss_pred             HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCC------CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf             996599966999817842434359999999985896175488------88999999999997699999991787455889


Q ss_pred             --HHHHHCCHHH-CCEEEEECCHHHH---HHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf             --9997135440-5803997188999---99997699669987999988999998
Q gi|255764510|r  180 --YFFSLPLPAK-ISAAFLCLSNNIA---SAIPASYKNVVTVACFPKETSLLKLL  228 (232)
Q Consensus       180 --~~~~~~~~~~-~~~~~~~ig~~tA---~~~~~~g~~~~~va~~p~~~~ll~al  228 (232)
                        .+.+.+...+ .++.+++-|..+.   +.+++.|...+ +.+..+...+++-+
T Consensus       100 ~~~li~~lr~~g~~~~~i~vGG~~~~~~~~~~~~~G~d~~-~~~~~~~~~~~~~l  153 (163)
T 1req_A          100 VPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEI-YTPGTVIPESAISL  153 (163)
T ss_dssp             HHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEE-ECTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEE-ECCCCCHHHHHHHH
T ss_conf             9999999996799885799807788787999997798868-48998099999999


No 168
>>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242)
Probab=23.95  E-value=42  Score=13.52  Aligned_cols=87  Identities=13%  Similarity=0.059  Sum_probs=56.3

Q ss_pred             CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHH-HHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             7775389721567562-------0146898469825676887504689998899-9862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTM-KNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~-~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+..++.++.+.....       -+.+.+.+.+..+....++............ ..++   .+.++++.++...+..+.
T Consensus        15 ~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~   94 (132)
T 3gv0_A           15 CGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLXQSSDRPDGIVSISGSSTIALV   94 (132)
T ss_dssp             TTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf             25340368717743322566678889999986311003330343211135778887654303577400113478888778


Q ss_pred             HHCCHHHC----CEEEEECCHH
Q ss_conf             71354405----8039971889
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~~  200 (232)
                      +.+...+.    ++.+++++..
T Consensus        95 ~~l~~~g~~ip~di~i~~fd~~  116 (132)
T 3gv0_A           95 AGFEAAGVKIGEDVDIVSKQSA  116 (132)
T ss_dssp             HHHHTTTCCTTTSCEEEEEESS
T ss_pred             HHHHHCCCCCCCCEEEEEECCH
T ss_conf             8876333014542289996783


No 169
>>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} (A:)
Probab=23.45  E-value=43  Score=13.46  Aligned_cols=41  Identities=10%  Similarity=-0.039  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH
Q ss_conf             886999999998798299942100000785200164475879998484
Q gi|255764510|r   10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS   57 (232)
Q Consensus        10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~   57 (232)
                      .-+..+++.|++.|.++...++-+..       ...+.++|.++|-|+
T Consensus        15 ~~A~~ia~~l~~~g~~v~~~~~~~~~-------~~~l~~~d~vi~g~p   55 (137)
T 2fz5_A           15 AMANEIEAAVKAAGADVESVRFEDTN-------VDDVASKDVILLGCP   55 (137)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETTSCC-------HHHHHTCSEEEEECC
T ss_pred             HHHHHHHHHHHHCCCCEEECCHHHHH-------HHHHHCCCEEEEEEE
T ss_conf             99999999997569811533357777-------876503543899996


No 170
>>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} (A:79-168)
Probab=23.17  E-value=43  Score=13.43  Aligned_cols=68  Identities=10%  Similarity=0.110  Sum_probs=46.9

Q ss_pred             EEEEEEECCCCCCHHHHHHHHC-CCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEE
Q ss_conf             7688750468999889998623-78389980789999999713544058039971889999999769966998
Q gi|255764510|r  144 VIDCYYSQDIAYPETTMKNLLQ-NADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTV  215 (232)
Q Consensus       144 ~~~vY~~~~~~~~~~~~~~~~~-~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~v  215 (232)
                      -++-|.+..  .....+..+++ ++....+.|...++...+.+...+.  ..+.-|..+.+.+++.|++.+.+
T Consensus        20 aivgf~~~~--~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~--~vVIG~~~~~~~A~~~Gl~~vli   88 (90)
T 2q5c_A           20 ALIAYKHSI--VDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENI--KIVVSGKTVTDEAIKQGLYGETI   88 (90)
T ss_dssp             EEEEESSCS--SCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTC--CEEEECHHHHHHHHHTTCEEEEC
T ss_pred             EEEECCCCC--HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEECCHHHHHHHHHCCCCEEEE
T ss_conf             999578613--6899999995994599996588999999999998699--79999879999999849968999


No 171
>>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:1-107,A:239-285)
Probab=22.99  E-value=44  Score=13.41  Aligned_cols=66  Identities=12%  Similarity=0.042  Sum_probs=34.0

Q ss_pred             HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHH
Q ss_conf             99999998798299942100000785-2001644758799984846799988620013630004158
Q gi|255764510|r   14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEA   79 (232)
Q Consensus        14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~   79 (232)
                      .+...+++.|+.++..+.-.-..... -.....-...|++|+.+..--........++.|+..++..
T Consensus        29 gi~~~a~~~Gy~lvI~~~~~d~~~~~~~i~~l~~~~vDGIII~~~~~~~~~~~~l~~~IPvVlid~~   95 (154)
T 3c3k_A           29 GIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNIIGAFPWVQCAEY   95 (154)
T ss_dssp             HHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHHTTSSEEEESSC
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEC
T ss_conf             9999999859989999789998999998766540455423321234328999850368878998404


No 172
>>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:108-243,A:302-316)
Probab=22.72  E-value=44  Score=13.37  Aligned_cols=99  Identities=9%  Similarity=0.076  Sum_probs=62.5

Q ss_pred             CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             77753897215675620-------146898469825676887504689998-8999862---378389980789999999
Q gi|255764510|r  114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      .+..+|+++.|......       +.+.|+++|..+.....+......... +.+..++   ..+++|+.++...+....
T Consensus        19 ~g~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~   98 (151)
T 1tjy_A           19 KEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAA   98 (151)
T ss_dssp             SSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf             55542000024676420135666677776503553320123302146788899999987328985199978868999999


Q ss_pred             HHCCHHH-CCEEEEEC--CHHHHHHHHHCCCCE
Q ss_conf             7135440-58039971--889999999769966
Q gi|255764510|r  183 SLPLPAK-ISAAFLCL--SNNIASAIPASYKNV  212 (232)
Q Consensus       183 ~~~~~~~-~~~~~~~i--g~~tA~~~~~~g~~~  212 (232)
                      +.+...+ .++.++++  ++.+.+.+++.-...
T Consensus        99 ~al~~~g~~~i~ivgfD~~~~~~~~i~~g~i~~  131 (151)
T 1tjy_A           99 QAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKE  131 (151)
T ss_dssp             HHHHHTTCCSCEEEEBCCHHHHHHHHHHTSCSE
T ss_pred             HHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCE
T ss_conf             999976999857999857099999998558648


No 173
>>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} (A:)
Probab=21.94  E-value=46  Score=13.28  Aligned_cols=58  Identities=9%  Similarity=-0.020  Sum_probs=26.2

Q ss_pred             CCEEEEECHHHHHHHHHHCCHHHC-CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf             838998078999999971354405-80399718899999997699669987999988999
Q gi|255764510|r  167 ADAILFYARSSVLYFFSLPLPAKI-SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLL  225 (232)
Q Consensus       167 ~d~i~f~S~~~v~~~~~~~~~~~~-~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll  225 (232)
                      ...|.++|..+....... ..+.. +.-+..+.+..|..+...|++...+++.+....|.
T Consensus       173 g~IV~isS~~~~~~~~~~-~~Y~asKaal~~l~~~lA~el~~~gIrVN~I~PG~i~T~~~  231 (285)
T 2c07_A          173 GRIINISSIVGLTGNVGQ-ANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT  231 (285)
T ss_dssp             EEEEEECCTHHHHCCTTC-HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---
T ss_pred             EEEEEECCHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHH
T ss_conf             299998776656789997-79999999999999999998535596999983574358023


No 174
>>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:109-239)
Probab=21.60  E-value=47  Score=13.24  Aligned_cols=88  Identities=7%  Similarity=0.035  Sum_probs=58.0

Q ss_pred             CCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHH
Q ss_conf             277753897215675620-------1468984698256768875046899988999862---378389980789999999
Q gi|255764510|r  113 FTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFF  182 (232)
Q Consensus       113 ~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~  182 (232)
                      ..+..++.++.+......       +.+.+.++|..+....++................   ...++|+..+...+..+.
T Consensus        14 ~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~~~~   93 (131)
T 3clk_A           14 NEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAXKAFGKNTDLTGIIAASDXTAIGIL   93 (131)
T ss_dssp             TTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC
T ss_conf             23321122347883222014456777777887086532000122210122111333456645667467532454433322


Q ss_pred             HHCCHHHC----CEEEEECCHH
Q ss_conf             71354405----8039971889
Q gi|255764510|r  183 SLPLPAKI----SAAFLCLSNN  200 (232)
Q Consensus       183 ~~~~~~~~----~~~~~~ig~~  200 (232)
                      ..+...+.    ++.++++...
T Consensus        94 ~~l~~~g~~iP~di~ii~fd~~  115 (131)
T 3clk_A           94 NQASSFGIEVPKDLSIVSIDGT  115 (131)
T ss_dssp             HHHHHTTCCTTTTCEEEEEECC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCH
T ss_conf             0114445668742223246735


No 175
>>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthesis, methyltransferase, transferase; 2.3A {Escherichia coli} (A:)
Probab=21.54  E-value=47  Score=13.23  Aligned_cols=30  Identities=13%  Similarity=0.007  Sum_probs=24.4

Q ss_pred             CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC
Q ss_conf             9389858968-86999999998798299942
Q gi|255764510|r    1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP   30 (232)
Q Consensus         1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P   30 (232)
                      ||||||=-.. =+..++..|.+.|.++...-
T Consensus         1 MkVLVtGatGfiG~~lv~~Ll~~g~~v~~~~   31 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGL   31 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9799989886899999999997799889999


No 176
>>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:)
Probab=21.47  E-value=47  Score=13.22  Aligned_cols=82  Identities=10%  Similarity=0.017  Sum_probs=50.8

Q ss_pred             EEEEECCHH--HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-HH-------H----HHHHHH
Q ss_conf             389858968--869999999987982999421000007852001644758799984846-79-------9----988620
Q gi|255764510|r    2 YIVITRPIK--KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-SL-------S----TLPANF   67 (232)
Q Consensus         2 ~ilitRp~~--~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-av-------~----~~~~~~   67 (232)
                      ||+|..-..  ....+.+.+++.|.++...|.....+.     ...+..||.+|++-.. .+       .    .+....
T Consensus         5 ~iliid~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-----~~~~~~~DgiIi~GGp~~~~~~~~~~~~~~~li~~~~   79 (250)
T 3l83_A            5 PVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPL-----PAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAV   79 (250)
T ss_dssp             CEEEEECSSSCCCTHHHHHHHHTTCCEEEEEGGGTCCC-----CSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC-----CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             49999678999805999999848987999978999878-----7786459999990999977787866899999999999


Q ss_pred             CCCCCEECCCHHHHHHHHHHC
Q ss_conf             013630004158999976410
Q gi|255764510|r   68 CRHTPIFAIGEASACLARQKG   88 (232)
Q Consensus        68 ~~~~~~~~vg~~t~~~~~~~~   88 (232)
                      ..+.|++.+--+-.-.....|
T Consensus        80 ~~~~PvLGIC~G~Qlla~alG  100 (250)
T 3l83_A           80 AQRVPVIGHCLGGQLLAKAMG  100 (250)
T ss_dssp             HTTCCEEEETHHHHHHHHHTT
T ss_pred             HCCCCEEEEEHHHHHHHEECC
T ss_conf             869988998644314644359


No 177
>>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} (G:)
Probab=21.29  E-value=47  Score=13.20  Aligned_cols=47  Identities=15%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             CCCCCEEEEECHHHH---------HHHHHHH------CCCCCEECCCHHHHHHHHHHCCCCC
Q ss_conf             475879998484679---------9988620------0136300041589999764101223
Q gi|255764510|r   46 QQSYGAIAITSSESL---------STLPANF------CRHTPIFAIGEASACLARQKGFTQI   92 (232)
Q Consensus        46 ~~~~d~iiftS~~av---------~~~~~~~------~~~~~~~~vg~~t~~~~~~~~~~~~   92 (232)
                      ....-+|+|||-.|.         +.+....      .....++++|......+...+....
T Consensus        55 ~~~~~~ivitSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~~~  116 (230)
T 1fs0_G           55 VKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVV  116 (230)
T ss_dssp             CSEEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEE
T ss_pred             CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCEEE
T ss_conf             86289999937986651543999999999987650169627999843410766743287146


No 178
>>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli K12} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* (A:)
Probab=21.16  E-value=48  Score=13.18  Aligned_cols=56  Identities=11%  Similarity=0.085  Sum_probs=29.7

Q ss_pred             EEEEE--CCHHHHH----HHHHHHHHCCCCEEEE-CCEEEE----------CCCCC--CCCCCCCCCCEEEEECH
Q ss_conf             38985--8968869----9999999879829994-210000----------07852--00164475879998484
Q gi|255764510|r    2 YIVIT--RPIKKAL----RTQEKIQKMGYIPVMM-PLSYFI----------HDRES--VFLAMQQSYGAIAITSS   57 (232)
Q Consensus         2 ~ilit--Rp~~~a~----~~~~~L~~~G~~~i~~-Pli~i~----------~~~~~--~~~~~~~~~d~iiftS~   57 (232)
                      ||||.  =|.+...    .+++.+++.|...+.+ .+-+..          +..++  .....+.++|.|||-||
T Consensus         3 kilii~gS~~g~t~~la~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~iI~~~P   77 (198)
T 3b6i_A            3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTP   77 (198)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEE
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEECC
T ss_conf             589999799808999999999638763895699995345571778876125545753246566522445999445


No 179
>>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355)
Probab=21.10  E-value=48  Score=13.17  Aligned_cols=18  Identities=6%  Similarity=0.069  Sum_probs=9.1

Q ss_pred             CCCCEEEEECHHHHHHHH
Q ss_conf             378389980789999999
Q gi|255764510|r  165 QNADAILFYARSSVLYFF  182 (232)
Q Consensus       165 ~~~d~i~f~S~~~v~~~~  182 (232)
                      .++|+|++++......+.
T Consensus       125 ~~vdGIIi~~~~~~~~~i  142 (221)
T 3e3m_A          125 RRPEAMVLSYDGHTEQTI  142 (221)
T ss_dssp             TCCSEEEEECSCCCHHHH
T ss_pred             HCCCCCCCCCCCCCHHHH
T ss_conf             223322223465413466


No 180
>>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} (A:65-238)
Probab=20.93  E-value=48  Score=13.15  Aligned_cols=19  Identities=21%  Similarity=0.503  Sum_probs=7.8

Q ss_pred             CCCEEEEECH--HHHHHHHHH
Q ss_conf             5879998484--679998862
Q gi|255764510|r   48 SYGAIAITSS--ESLSTLPAN   66 (232)
Q Consensus        48 ~~d~iiftS~--~av~~~~~~   66 (232)
                      +.+.+++|+.  .|.......
T Consensus         3 ~~e~v~~t~g~t~a~~~~~~~   23 (174)
T 2c0r_A            3 GYKVLFIQGGASTQFAMIPMN   23 (174)
T ss_dssp             SEEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHC
T ss_conf             878999668841899999861


No 181
>>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:107-242)
Probab=20.89  E-value=48  Score=13.15  Aligned_cols=108  Identities=14%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEE
Q ss_conf             789998642201277753897215675620-------1468984698256768875046899988999862---378389
Q gi|255764510|r  101 NLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAI  170 (232)
Q Consensus       101 ~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i  170 (232)
                      ..+..+.+... ..+..++.++.|......       +.+.++++|........+...........+..++   .++++|
T Consensus         7 ~a~~~~~~~l~-~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai   85 (136)
T 3ksm_A            7 LAARALLATLD-LSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEXLRLLKETPTIDGL   85 (136)
T ss_dssp             HHHHHHHHHSC-TTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCCEE
T ss_pred             HHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             99999998732-27984799953767764077898779999986798642021101022588999988764148876356


Q ss_pred             EEECHHHHHHHHHHCCHHHC--CEEEEECC--HHHHHHHHHCCC
Q ss_conf             98078999999971354405--80399718--899999997699
Q gi|255764510|r  171 LFYARSSVLYFFSLPLPAKI--SAAFLCLS--NNIASAIPASYK  210 (232)
Q Consensus       171 ~f~S~~~v~~~~~~~~~~~~--~~~~~~ig--~~tA~~~~~~g~  210 (232)
                      +..+...+..+++.+...+.  ++.++++.  +-+.... ..|.
T Consensus        86 ~~~~d~~a~g~~~al~~~g~p~di~v~g~d~~~~~~~~~-~~~~  128 (136)
T 3ksm_A           86 FTPNESTTIGALVAIRQSGXSKQFGFIGFDQTEELEAAX-YAGE  128 (136)
T ss_dssp             ECCSHHHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHH-HTTS
T ss_pred             EECCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH-HCCC
T ss_conf             625719999999999975999992899878989999999-7499


No 182
>>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:1-120,A:306-335)
Probab=20.82  E-value=49  Score=13.14  Aligned_cols=10  Identities=20%  Similarity=0.517  Sum_probs=3.4

Q ss_pred             HHCCCCEEEE
Q ss_conf             6237838998
Q gi|255764510|r  163 LLQNADAILF  172 (232)
Q Consensus       163 ~~~~~d~i~f  172 (232)
                      .+.+.|+|+.
T Consensus        64 ~l~~~d~ii~   73 (150)
T 2g76_A           64 ELQDCEGLIV   73 (150)
T ss_dssp             HGGGCSEEEE
T ss_pred             HHCCCCEEEE
T ss_conf             8489968998


No 183
>>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} (A:)
Probab=20.22  E-value=50  Score=13.06  Aligned_cols=25  Identities=24%  Similarity=0.190  Sum_probs=16.0

Q ss_pred             CCCCCCCCEEEEECHH-------HHHHHHHHH
Q ss_conf             1644758799984846-------799988620
Q gi|255764510|r   43 LAMQQSYGAIAITSSE-------SLSTLPANF   67 (232)
Q Consensus        43 ~~~~~~~d~iiftS~~-------av~~~~~~~   67 (232)
                      ..++.++|.|||-||.       .++.+....
T Consensus        71 ~~~~~~aD~ii~~~P~y~~~~p~~lk~~ld~~  102 (151)
T 3edo_A           71 NIDYNNYDLILIGSPVWSGYPATPIKTLLDQX  102 (151)
T ss_dssp             CCCGGGCSEEEEEEEEETTEECTHHHHHHHHT
T ss_pred             HHHHHHCCEEEEECCHHHHCCHHHHHHHHHHC
T ss_conf             54297688889955255401369999999955


No 184
>>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold; HET: TAR CNC; 1.60A {Clostridium cochlearium} (A:)
Probab=20.21  E-value=50  Score=13.06  Aligned_cols=91  Identities=13%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEEC--HHHHHHHHHHCC---HHHC-CEEEEECC-
Q ss_conf             6201468984698256768875046899988999862--3783899807--899999997135---4405-80399718-
Q gi|255764510|r  128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYA--RSSVLYFFSLPL---PAKI-SAAFLCLS-  198 (232)
Q Consensus       128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S--~~~v~~~~~~~~---~~~~-~~~~~~ig-  198 (232)
                      ...+...|+.+|+.|..+-.-  .|    .+.+....  .++|.|.+++  +.....+.+.+.   +... ++.+++-| 
T Consensus        20 ~~~va~~lr~~G~~V~~LG~~--~p----~e~l~~~~~~~~~d~V~lS~~~~~~~~~~~~~~~~l~~~~~~~~~vivGG~   93 (137)
T 1ccw_A           20 NKILDHAFTNAGFNVVNIGVL--SP----QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGN   93 (137)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEE--EC----HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEES
T ss_pred             HHHHHHHHHHCCCEEEECCCC--CC----HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             999999999789867722345--69----999999998449877887511442147799999999872347987999368


Q ss_pred             --------HHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf             --------89999999769966998799998899
Q gi|255764510|r  199 --------NNIASAIPASYKNVVTVACFPKETSL  224 (232)
Q Consensus       199 --------~~tA~~~~~~g~~~~~va~~p~~~~l  224 (232)
                              +..++.+...|...+.-+..+-.+.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  127 (137)
T 1ccw_A           94 IVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGI  127 (137)
T ss_dssp             CSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHH
T ss_conf             6777657087899999749888979989999999


Done!