Query gi|255764510|ref|YP_003065448.2| uroporphyrinogen-III synthase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 232 No_of_seqs 102 out of 2643 Neff 9.6 Searched_HMMs 33803 Date Sat Jun 4 22:49:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764510.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1jr2_A Uroporphyrinogen-III s 99.8 3.8E-20 1.1E-24 139.8 9.8 123 27-154 1-139 (139) 2 >1wcw_A Uroporphyrinogen III s 99.4 3.6E-13 1.1E-17 97.9 8.4 95 46-146 10-114 (114) 3 >3d8t_A Uroporphyrinogen-III s 99.3 7.8E-12 2.3E-16 89.9 9.3 93 46-146 11-115 (116) 4 >3d8t_A Uroporphyrinogen-III s 98.8 3.8E-09 1.1E-13 73.8 4.9 75 157-231 4-85 (116) 5 >1wcw_A Uroporphyrinogen III s 98.6 2.5E-08 7.4E-13 68.9 4.1 71 160-230 6-83 (114) 6 >1jr2_A Uroporphyrinogen-III s 98.5 3.6E-07 1.1E-11 61.9 7.0 67 164-231 18-97 (139) 7 >1jr2_A Uroporphyrinogen-III s 98.3 7.6E-06 2.2E-10 54.0 8.9 110 115-231 20-140 (147) 8 >1wcw_A Uroporphyrinogen III s 96.0 0.024 7E-07 33.0 6.6 107 124-230 15-140 (147) 9 >3d8t_A Uroporphyrinogen-III s 94.5 0.31 9E-06 26.3 8.4 105 120-230 36-149 (156) 10 >1jr2_A Uroporphyrinogen-III s 94.4 0.088 2.6E-06 29.6 5.2 103 1-106 22-137 (147) 11 >3llv_A Exopolyphosphatase-rel 86.2 2.1 6.1E-05 21.4 7.0 117 114-230 4-137 (141) 12 >3hut_A Putative branched-chai 85.6 1.8 5.4E-05 21.7 5.1 85 114-199 14-105 (119) 13 >2a5l_A Trp repressor binding 85.2 1.3 3.9E-05 22.6 4.2 67 1-67 6-97 (200) 14 >2ywj_A Glutamine amidotransfe 84.7 2.5 7.3E-05 20.9 7.5 77 1-88 1-86 (186) 15 >1usg_A Leucine-specific bindi 84.1 2.6 7.7E-05 20.8 8.0 96 113-208 14-119 (150) 16 >2zki_A 199AA long hypothetica 83.2 1.4 4E-05 22.5 3.6 55 12-66 21-95 (199) 17 >1vme_A Flavoprotein; TM0755, 81.8 1.5 4.3E-05 22.3 3.3 46 12-57 20-65 (147) 18 >1gpw_B Amidotransferase HISH; 81.5 1 3.1E-05 23.1 2.5 81 1-88 1-95 (201) 19 >3fwz_A Inner membrane protein 81.4 3.3 9.8E-05 20.1 9.2 116 114-229 5-138 (140) 20 >3lkb_A Probable branched-chai 81.0 3.5 0.0001 20.0 10.2 106 105-210 8-123 (172) 21 >3h5l_A Putative branched-chai 79.9 3.7 0.00011 19.8 7.6 100 108-207 17-127 (182) 22 >3lop_A Substrate binding peri 79.8 3.8 0.00011 19.8 5.3 83 114-197 17-106 (162) 23 >1sc6_A PGDH, D-3-phosphoglyce 79.5 3.4 0.0001 20.0 4.6 93 1-98 5-102 (133) 24 >1bwd_A ADT, protein (inosamin 78.5 1.3 3.8E-05 22.6 2.2 32 1-32 10-46 (50) 25 >1jdw_A L-arginine\:glycine am 78.2 1.3 4E-05 22.5 2.2 32 1-32 10-46 (50) 26 >2eyq_A TRCF, transcription-re 77.9 4.3 0.00013 19.4 6.3 77 3-79 46-141 (206) 27 >3ha2_A NADPH-quinone reductas 74.9 5.2 0.00015 19.0 4.6 41 131-175 20-60 (177) 28 >3f2v_A General stress protein 74.2 3.8 0.00011 19.8 3.6 58 1-58 2-68 (192) 29 >1d4a_A DT-diaphorase, quinone 73.9 3 9E-05 20.4 3.1 31 1-31 3-41 (225) 30 >2cuk_A Glycerate dehydrogenas 73.3 3.6 0.00011 19.9 3.3 90 1-95 1-95 (128) 31 >2e4u_A Metabotropic glutamate 72.5 6 0.00018 18.6 4.3 83 115-197 16-107 (177) 32 >1id1_A Putative potassium cha 72.4 6 0.00018 18.6 6.0 113 117-229 4-138 (153) 33 >1sg0_A NRH dehydrogenase [qui 71.3 6.4 0.00019 18.4 4.5 31 1-31 3-41 (230) 34 >2nv0_A Glutamine amidotransfe 71.3 6.4 0.00019 18.4 4.7 77 1-88 2-90 (196) 35 >3geb_A EYES absent homolog 2; 71.1 6.4 0.00019 18.4 4.2 46 186-231 84-131 (133) 36 >3evt_A Phosphoglycerate dehyd 70.7 6.6 0.00019 18.4 4.4 86 1-95 2-91 (134) 37 >2h1q_A Hypothetical protein; 70.6 6.6 0.0002 18.3 6.2 149 74-230 94-253 (270) 38 >2o4c_A Erythronate-4-phosphat 70.5 5.2 0.00015 18.9 3.6 56 1-67 1-56 (120) 39 >3fvw_A Putative NAD(P)H-depen 70.0 6.6 0.0002 18.3 4.1 58 1-58 3-77 (192) 40 >1ydg_A Trp repressor binding 69.8 3.6 0.00011 19.9 2.7 57 1-57 7-87 (211) 41 >2vpi_A GMP synthase; guanine 69.7 6.9 0.0002 18.2 5.7 83 1-89 25-115 (218) 42 >1ka9_H Imidazole glycerol pho 67.9 7.6 0.00022 18.0 5.2 49 1-60 3-52 (200) 43 >3klb_A Putative flavoprotein; 65.4 5.6 0.00016 18.8 2.9 25 166-190 78-109 (162) 44 >3hr4_A Nitric oxide synthase, 61.5 10 0.0003 17.3 4.1 50 1-57 1-55 (179) 45 >2d59_A Hypothetical protein P 61.0 10 0.0003 17.2 5.0 99 115-213 21-128 (144) 46 >2q62_A ARSH; alpha/beta, flav 60.1 9.5 0.00028 17.4 3.3 19 131-149 57-75 (247) 47 >1ycg_A Nitric oxide reductase 59.7 7 0.00021 18.2 2.6 41 14-57 22-62 (149) 48 >1h70_A NG, NG-dimethylarginin 59.6 8.1 0.00024 17.8 2.9 19 197-215 56-74 (82) 49 >2pi1_A D-lactate dehydrogenas 58.7 6.5 0.00019 18.4 2.3 167 1-177 1-205 (334) 50 >3ff4_A Uncharacterized protei 58.3 5.8 0.00017 18.7 1.9 98 116-213 4-109 (122) 51 >1qsg_A Enoyl-[acyl-carrier-pr 57.9 12 0.00034 16.9 5.7 64 2-68 11-82 (265) 52 >2q9u_A A-type flavoprotein; f 57.9 8.9 0.00026 17.6 2.9 41 14-57 22-62 (160) 53 >3i09_A Periplasmic branched-c 56.8 12 0.00036 16.8 7.6 79 114-192 16-100 (191) 54 >1o1y_A Conserved hypothetical 55.8 13 0.00037 16.7 4.7 85 1-90 13-113 (239) 55 >1kjq_A GART 2, phosphoribosyl 54.8 13 0.00039 16.6 5.5 90 112-211 7-99 (125) 56 >1wl8_A GMP synthase [glutamin 54.6 13 0.00039 16.6 7.8 84 1-90 1-92 (189) 57 >2a9v_A GMP synthase; NP_39440 53.9 12 0.00035 16.8 2.9 80 1-88 14-103 (212) 58 >1czn_A Flavodoxin; FMN bindin 53.6 14 0.0004 16.5 3.9 50 1-58 1-56 (169) 59 >3gfs_A FMN-dependent NADPH-az 53.6 8.2 0.00024 17.8 2.1 58 1-58 1-73 (174) 60 >1wwk_A Phosphoglycerate dehyd 53.5 14 0.0004 16.4 3.8 51 1-58 4-54 (121) 61 >2ohh_A Type A flavoprotein FP 53.3 9.4 0.00028 17.4 2.4 12 46-57 51-62 (150) 62 >3k9c_A Transcriptional regula 53.3 8.6 0.00025 17.7 2.2 60 15-74 33-92 (159) 63 >3gyb_A Transcriptional regula 52.9 14 0.00041 16.4 5.6 92 114-205 15-118 (129) 64 >3k9c_A Transcriptional regula 52.9 14 0.00041 16.4 5.9 85 114-198 15-112 (130) 65 >1lss_A TRK system potassium u 51.8 15 0.00043 16.3 6.7 114 116-229 4-135 (140) 66 >1sqs_A Conserved hypothetical 51.4 15 0.00044 16.2 4.3 45 14-58 23-89 (242) 67 >3d54_D Phosphoribosylformylgl 51.2 15 0.00044 16.2 4.9 79 1-90 3-99 (193) 68 >2ekl_A D-3-phosphoglycerate d 51.1 13 0.00037 16.7 2.7 50 1-57 6-55 (127) 69 >2hmt_A YUAA protein; RCK, KTN 50.3 15 0.00046 16.1 7.5 115 115-229 5-137 (144) 70 >3ks9_A Mglur1, metabotropic g 49.8 16 0.00046 16.1 3.7 75 117-191 18-102 (190) 71 >1iuk_A Hypothetical protein T 49.7 16 0.00047 16.1 3.6 98 116-213 13-121 (140) 72 >3hly_A Flavodoxin-like domain 49.5 12 0.00034 16.9 2.3 44 12-58 18-61 (161) 73 >2gcg_A Glyoxylate reductase/h 49.0 12 0.00035 16.8 2.3 53 1-57 9-62 (140) 74 >3jvd_A Transcriptional regula 47.2 17 0.00051 15.8 7.3 88 112-199 13-111 (128) 75 >1t0b_A THUA-like protein; tre 47.0 17 0.00051 15.8 5.5 66 13-81 35-108 (252) 76 >3eaf_A ABC transporter, subst 46.5 18 0.00052 15.8 5.9 104 104-207 8-124 (181) 77 >3k4h_A Putative transcription 46.4 18 0.00052 15.8 6.7 91 113-203 14-119 (132) 78 >3brs_A Periplasmic binding pr 46.0 18 0.00053 15.7 4.8 93 113-206 16-122 (133) 79 >2amj_A Modulator of drug acti 45.9 12 0.00035 16.8 1.9 14 45-58 67-80 (204) 80 >1q7r_A Predicted amidotransfe 45.2 18 0.00055 15.7 5.9 79 1-90 24-114 (219) 81 >2o1m_A Probable amino-acid AB 44.8 19 0.00055 15.6 5.6 70 112-186 22-92 (107) 82 >1qp8_A Formate dehydrogenase; 44.2 19 0.00057 15.6 3.0 65 113-177 41-105 (183) 83 >3ftp_A 3-oxoacyl-[acyl-carrie 44.0 19 0.00057 15.5 3.8 30 195-224 185-214 (270) 84 >2ywd_A Glutamine amidotransfe 44.0 19 0.00057 15.5 4.0 79 1-90 1-94 (191) 85 >1ykg_A SIR-FP, sulfite reduct 43.0 20 0.00059 15.4 3.4 40 11-57 26-65 (167) 86 >2hpv_A FMN-dependent NADH-azo 42.7 17 0.00051 15.8 2.4 15 15-29 26-42 (208) 87 >2rgy_A Transcriptional regula 42.1 21 0.00061 15.4 6.2 87 113-199 15-116 (133) 88 >3k5p_A D-3-phosphoglycerate d 41.3 21 0.00063 15.3 4.1 21 203-223 97-117 (144) 89 >1e5d_A Rubredoxin\:oxygen oxi 41.3 21 0.00063 15.3 10.0 92 130-226 22-134 (152) 90 >2ax3_A Hypothetical protein T 41.1 21 0.00063 15.3 3.7 66 85-151 22-91 (213) 91 >1pea_A Amidase operon; gene r 40.1 19 0.00057 15.5 2.3 78 114-191 12-97 (179) 92 >1obo_A Flavodoxin; electron t 39.0 22 0.00065 15.2 2.4 49 1-58 1-56 (169) 93 >3d4o_A Dipicolinate synthase 39.0 8.1 0.00024 17.8 0.2 19 11-29 16-34 (149) 94 >2o8n_A APOA-I binding protein 38.7 23 0.00069 15.0 3.5 64 88-151 48-118 (265) 95 >1ja1_A NADPH-cytochrome P450 37.8 24 0.00071 15.0 3.7 43 12-56 39-81 (182) 96 >1qpz_A PURA, protein (purine 37.1 25 0.00073 14.9 5.6 86 114-199 15-115 (132) 97 >1dbq_A Purine repressor; tran 37.1 25 0.00073 14.9 5.9 86 114-199 15-115 (132) 98 >2o20_A Catabolite control pro 36.7 25 0.00074 14.9 6.3 85 114-198 15-112 (130) 99 >1wdi_A Hypothetical protein T 36.7 25 0.00075 14.8 7.5 91 114-208 175-267 (345) 100 >2ioy_A Periplasmic sugar-bind 36.6 25 0.00075 14.8 10.2 103 113-215 16-130 (133) 101 >1xah_A Sadhqs, 3-dehydroquina 36.5 25 0.00075 14.8 3.0 91 114-205 29-129 (165) 102 >1dlj_A UDP-glucose dehydrogen 35.7 26 0.00077 14.8 2.9 48 12-59 25-78 (96) 103 >3ctp_A Periplasmic binding pr 35.4 26 0.00078 14.7 5.0 90 114-204 15-118 (130) 104 >1yob_A Flavodoxin 2, flavodox 35.3 16 0.00047 16.1 1.2 53 1-58 1-56 (179) 105 >2hqr_A Putative transcription 35.0 27 0.00079 14.7 6.6 69 1-74 1-72 (99) 106 >3egc_A Putative ribose operon 34.8 27 0.0008 14.7 8.1 88 114-201 15-117 (132) 107 >3dbi_A Sugar-binding transcri 34.1 28 0.00082 14.6 7.1 88 114-201 16-118 (133) 108 >3brq_A HTH-type transcription 34.1 28 0.00082 14.6 7.1 88 114-201 16-118 (133) 109 >1f4p_A Flavodoxin; electron t 33.9 28 0.00083 14.6 4.0 43 10-58 16-58 (147) 110 >2zkl_A Capsular polysaccharid 33.6 28 0.00084 14.5 3.8 30 1-30 1-31 (130) 111 >1ag9_A Flavodoxin; electron t 33.6 21 0.00063 15.3 1.6 38 12-58 18-55 (175) 112 >1n2s_A DTDP-4-, DTDP-glucose 33.5 28 0.00082 14.6 2.2 58 1-58 1-64 (299) 113 >2g1u_A Hypothetical protein T 33.2 29 0.00085 14.5 6.2 117 112-229 15-150 (155) 114 >2v1x_A ATP-dependent DNA heli 33.1 29 0.00085 14.5 3.5 45 100-144 16-61 (138) 115 >3bul_A Methionine synthase; t 32.9 29 0.00086 14.5 9.1 17 14-30 23-39 (157) 116 >5nul_A Flavodoxin; electron t 32.7 29 0.00087 14.5 3.0 40 11-57 15-54 (138) 117 >1yqe_A Hypothetical UPF0204 p 32.2 30 0.00088 14.4 3.9 59 3-61 8-83 (185) 118 >2duw_A Putative COA-binding p 32.2 30 0.00088 14.4 2.4 97 116-212 13-120 (145) 119 >1t0i_A YLR011WP; FMN binding 32.2 30 0.00088 14.4 5.8 14 45-58 81-94 (191) 120 >1vb5_A Translation initiation 31.2 31 0.00092 14.3 6.1 102 113-218 107-220 (276) 121 >2h0a_A TTHA0807, transcriptio 31.1 31 0.00092 14.3 2.5 64 14-77 20-85 (142) 122 >1y81_A Conserved hypothetical 31.1 31 0.00092 14.3 5.4 99 114-212 12-119 (138) 123 >1jvn_A Glutamine, bifunctiona 31.0 31 0.00092 14.3 4.7 76 2-86 6-95 (218) 124 >3e61_A Putative transcription 30.6 32 0.00094 14.2 3.5 16 166-181 64-79 (120) 125 >3e4r_A Nitrate transport prot 30.4 32 0.00095 14.2 4.8 69 112-184 18-87 (98) 126 >3d3j_A Enhancer of mRNA-decap 30.4 32 0.00095 14.2 4.7 72 81-152 89-172 (306) 127 >2ggs_A 273AA long hypothetica 29.9 33 0.00097 14.2 3.5 31 1-31 1-32 (273) 128 >2dc1_A L-aspartate dehydrogen 29.2 34 0.00099 14.1 6.8 75 1-75 1-79 (133) 129 >1jye_A Lactose operon repress 29.1 34 0.001 14.1 6.3 85 114-198 15-112 (130) 130 >2b4a_A BH3024; 10175646, stru 29.0 34 0.001 14.1 2.1 107 115-230 14-127 (138) 131 >3d4o_A Dipicolinate synthase 28.9 34 0.001 14.1 2.6 108 104-217 18-142 (144) 132 >2p5y_A UDP-glucose 4-epimeras 28.8 34 0.001 14.1 4.2 30 1-30 1-31 (311) 133 >1rtt_A Conserved hypothetical 28.6 34 0.001 14.0 3.1 58 1-58 7-82 (193) 134 >2i2x_B MTAC, methyltransferas 28.5 34 0.001 14.0 9.0 104 116-226 5-121 (140) 135 >3jy6_A Transcriptional regula 28.4 35 0.001 14.0 2.7 65 15-79 29-94 (159) 136 >3grk_A Enoyl-(acyl-carrier-pr 28.2 35 0.001 14.0 4.5 10 206-215 202-211 (293) 137 >2nac_A NAD-dependent formate 27.8 36 0.0011 14.0 2.3 11 17-27 61-71 (203) 138 >3fni_A Putative diflavin flav 27.7 36 0.0011 13.9 6.2 44 12-57 22-65 (159) 139 >1jx4_A DNA polymerase IV (fam 27.4 30 0.0009 14.4 1.6 17 75-91 3-19 (55) 140 >1dxy_A D-2-hydroxyisocaproate 27.4 36 0.0011 13.9 3.4 53 1-58 1-54 (136) 141 >2w8t_A SPT, serine palmitoylt 27.4 36 0.0011 13.9 3.0 100 50-152 3-114 (164) 142 >2vzf_A NADH-dependent FMN red 27.3 36 0.0011 13.9 3.1 58 1-58 3-79 (197) 143 >2v4n_A Multifunctional protei 27.2 36 0.0011 13.9 3.2 69 1-69 2-82 (233) 144 >3h5o_A Transcriptional regula 27.0 37 0.0011 13.9 7.4 86 114-199 15-115 (132) 145 >3gpi_A NAD-dependent epimeras 26.9 37 0.0011 13.9 3.1 30 1-30 3-33 (286) 146 >3l6u_A ABC-type sugar transpo 26.9 37 0.0011 13.8 9.7 102 114-216 22-136 (138) 147 >3clk_A Transcription regulato 26.8 37 0.0011 13.8 3.0 46 15-60 30-77 (159) 148 >1w2w_B 5-methylthioribose-1-p 26.5 33 0.00097 14.1 1.6 24 6-29 12-36 (38) 149 >3gg2_A Sugar dehydrogenase, U 26.5 38 0.0011 13.8 1.9 66 111-176 11-93 (148) 150 >2iss_D Glutamine amidotransfe 26.4 38 0.0011 13.8 7.0 79 1-90 21-111 (208) 151 >2dwc_A PH0318, 433AA long hyp 26.4 38 0.0011 13.8 6.5 88 114-211 17-107 (108) 152 >2e6c_A 5'-nucleotidase SURE; 26.3 38 0.0011 13.8 3.2 33 1-33 1-37 (244) 153 >3eyw_A C-terminal domain of g 26.1 38 0.0011 13.8 9.4 100 116-215 4-121 (123) 154 >3k1y_A Oxidoreductase; struct 25.9 38 0.0011 13.7 4.4 30 160-189 79-115 (191) 155 >1udb_A Epimerase, UDP-galacto 25.9 39 0.0011 13.7 4.2 30 1-30 1-31 (338) 156 >3bh1_A UPF0371 protein DIP234 25.8 39 0.0011 13.7 4.5 15 11-25 18-32 (344) 157 >3gyb_A Transcriptional regula 25.5 39 0.0012 13.7 3.3 53 13-65 25-77 (151) 158 >1jzt_A Hypothetical 27.5 kDa 25.2 37 0.0011 13.9 1.7 37 115-151 57-97 (246) 159 >3d3k_A Enhancer of mRNA-decap 25.2 40 0.0012 13.7 4.4 40 114-153 83-126 (259) 160 >3ba1_A HPPR, hydroxyphenylpyr 25.0 40 0.0012 13.6 3.1 97 118-223 23-124 (150) 161 >3hcw_A Maltose operon transcr 25.0 40 0.0012 13.6 6.7 87 114-200 15-116 (132) 162 >2fzv_A Putative arsenical res 24.8 40 0.0012 13.6 4.6 74 114-187 56-151 (241) 163 >3lft_A Uncharacterized protei 24.7 41 0.0012 13.6 8.1 87 113-202 13-107 (118) 164 >1h70_A NG, NG-dimethylarginin 24.6 41 0.0012 13.6 2.7 27 11-37 35-61 (72) 165 >2rgy_A Transcriptional regula 24.5 37 0.0011 13.8 1.6 10 166-175 67-76 (132) 166 >1j4a_A D-LDH, D-lactate dehyd 24.1 42 0.0012 13.5 5.6 54 1-57 2-55 (136) 167 >1req_A Methylmalonyl-COA muta 24.1 42 0.0012 13.5 4.7 112 110-228 26-153 (163) 168 >3gv0_A Transcriptional regula 24.0 42 0.0012 13.5 6.3 87 114-200 15-116 (132) 169 >2fz5_A Flavodoxin; alpha/beta 23.5 43 0.0013 13.5 3.7 41 10-57 15-55 (137) 170 >2q5c_A NTRC family transcript 23.2 43 0.0013 13.4 7.0 68 144-215 20-88 (90) 171 >3c3k_A Alanine racemase; stru 23.0 44 0.0013 13.4 3.0 66 14-79 29-95 (154) 172 >1tjy_A Sugar transport protei 22.7 44 0.0013 13.4 9.8 99 114-212 19-131 (151) 173 >2c07_A 3-oxoacyl-(acyl-carrie 21.9 46 0.0014 13.3 2.7 58 167-225 173-231 (285) 174 >3clk_A Transcription regulato 21.6 47 0.0014 13.2 7.0 88 113-200 14-115 (131) 175 >2bll_A Protein YFBG; decarbox 21.5 47 0.0014 13.2 4.6 30 1-30 1-31 (345) 176 >3l83_A Glutamine amido transf 21.5 47 0.0014 13.2 6.9 82 2-88 5-100 (250) 177 >1fs0_G ATP synthase gamma sub 21.3 47 0.0014 13.2 5.4 47 46-92 55-116 (230) 178 >3b6i_A Flavoprotein WRBA; fla 21.2 48 0.0014 13.2 5.6 56 2-57 3-77 (198) 179 >3e3m_A Transcriptional regula 21.1 48 0.0014 13.2 2.2 18 165-182 125-142 (221) 180 >2c0r_A PSAT, phosphoserine am 20.9 48 0.0014 13.2 4.9 19 48-66 3-23 (174) 181 >3ksm_A ABC-type sugar transpo 20.9 48 0.0014 13.1 9.0 108 101-210 7-128 (136) 182 >2g76_A 3-PGDH, D-3-phosphogly 20.8 49 0.0014 13.1 4.5 10 163-172 64-73 (150) 183 >3edo_A Flavoprotein, putative 20.2 50 0.0015 13.1 5.4 25 43-67 71-102 (151) 184 >1ccw_A Protein (glutamate mut 20.2 50 0.0015 13.1 5.5 91 128-224 20-127 (137) No 1 >>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:57-195) Probab=99.83 E-value=3.8e-20 Score=139.79 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=107.7 Q ss_pred EEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH----------------CCCCCEECCCHHHHHHHHHHCCC Q ss_conf 99421000007852001644758799984846799988620----------------01363000415899997641012 Q gi|255764510|r 27 VMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF----------------CRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 27 i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~----------------~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) +++|++++.+++... ..+.+||||||||+|||++|+..+ ++..+++|+|++|++++.+.|+. T Consensus 1 i~~p~~~~~~l~~~~--~~l~~~d~iiFTS~~aV~~~~~~l~~~~~~~~~~~~~~~~l~~~~i~~VG~~T~~~L~~~G~~ 78 (139) T 1jr2_A 1 LSFEFLSLPSFSEKL--SHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLD 78 (139) T ss_dssp EEEEECCHHHHHHHH--TCGGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCC T ss_pred EEEEECCHHHHHHHH--HCHHHCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCC T ss_conf 888847838999987--382005689998869999999999872764012455542124785999849999999986993 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC Q ss_conf 2354445456789998642201277753897215675620146898469825676887504689 Q gi|255764510|r 91 QIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA 154 (232) Q Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 154 (232) ...+..+.++.+.+++.. ....++++++++|+.++++|.+.|++.|+.|+++++|+|++++ T Consensus 79 ~~~~~~~~~~~L~~~l~~---~~~~~~~iL~~~~~~~~~~L~~~L~~~g~~v~~~~vY~t~~~P 139 (139) T 1jr2_A 79 TEGETCGNAEKLAEYICS---RESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHP 139 (139) T ss_dssp CSCCSCSSHHHHHHHHHT---SCCCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECT T ss_pred CCCCCCCCHHHHHHHHHH---HCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 336788899999999987---4468982899724665078999998579987334677310488 No 2 >>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161) Probab=99.45 E-value=3.6e-13 Score=97.90 Aligned_cols=95 Identities=13% Similarity=-0.021 Sum_probs=77.6 Q ss_pred CCCCCEEEEECHHHHHHHHHHHC----------CCCCEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC Q ss_conf 47587999848467999886200----------13630004158999976410122354445456789998642201277 Q gi|255764510|r 46 QQSYGAIAITSSESLSTLPANFC----------RHTPIFAIGEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTP 115 (232) Q Consensus 46 ~~~~d~iiftS~~av~~~~~~~~----------~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 115 (232) .++|||+||||+|||++++.... .+.+++|+|++|+++++++|+.....+... .++.+.. ...+ T Consensus 10 ~~~~d~iiFTS~~~V~~~~~~~~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~g~~~~~~p~~~---~~e~L~~---~~~~ 83 (114) T 1wcw_A 10 AQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGT---SKSLLPL---LPQG 83 (114) T ss_dssp HTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSS---HHHHGGG---SCCC T ss_pred CCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHH---HHHHHHH---HCCC T ss_conf 179999999798999999999987396476784188599997899999997499972275133---8999986---4358 Q ss_pred CCEEEEECCCCCCCCHHHHHHHCCCEEEEEE Q ss_conf 7538972156756201468984698256768 Q gi|255764510|r 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVID 146 (232) Q Consensus 116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~ 146 (232) ++++++++|+.+++.|++.|+++|+.|++++ T Consensus 84 ~~~vl~~~g~~~~~~L~~~L~~~G~~v~~vv 114 (114) T 1wcw_A 84 RGVAALQLYGKPLPLLENALAERGYRVLPLM 114 (114) T ss_dssp CEEEEEECCSSCCHHHHHHHHHTTEEEEEEC T ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCEEEE T ss_conf 8489997079881799999997799766988 No 3 >>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:72-187) Probab=99.33 E-value=7.8e-12 Score=89.92 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=74.9 Q ss_pred CCCCCEEEEECHHHHHHHHHHHC----------CCCCEECCCHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHCCC Q ss_conf 47587999848467999886200----------13630004158999976410122354445-45678999864220127 Q gi|255764510|r 46 QQSYGAIAITSSESLSTLPANFC----------RHTPIFAIGEASACLARQKGFTQIFHGKD-NSINLAKIIVEQKVLFT 114 (232) Q Consensus 46 ~~~~d~iiftS~~av~~~~~~~~----------~~~~~~~vg~~t~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~ 114 (232) .++||||||||+|||++++.+.. ...+++|+|++|++++++.|......+.. .++. +. ... T Consensus 11 ~~~~d~iifTS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~G~~~~~~p~~~~~e~----L~----~~l 82 (116) T 3d8t_A 11 AQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSL----LP----LLP 82 (116) T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSSGGGG----GG----GCC T ss_pred CCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHH----HH----HHH T ss_conf 1589999998879999999999980975546631786999870189999987998430785468999----98----663 Q ss_pred CCCEEEEECCCC-CCCCHHHHHHHCCCEEEEEE Q ss_conf 775389721567-56201468984698256768 Q gi|255764510|r 115 PQKPLIYLGGKP-RNFHFEDYLIEHKIPLRVID 146 (232) Q Consensus 115 ~~~~vl~~~g~~-~~~~l~~~L~~~g~~v~~~~ 146 (232) +++++++++|.. +++.|.+.|+++|+.|+++. T Consensus 83 ~~~~il~~~~~~~~~~~L~~~L~~~G~~V~~v~ 115 (116) T 3d8t_A 83 QGRGVAALQLYGKPLPLLENALAERGYRVLPLM 115 (116) T ss_dssp CCCSEEEEECSSSCCHHHHHHHHHTTCEEEEEC T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEE T ss_conf 089789997178873899999997899899997 No 4 >>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:72-187) Probab=98.83 E-value=3.8e-09 Score=73.80 Aligned_cols=75 Identities=17% Similarity=0.039 Sum_probs=63.1 Q ss_pred HHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHC-------CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 8899986237838998078999999971354405-------803997188999999976996699879999889999986 Q gi|255764510|r 157 ETTMKNLLQNADAILFYARSSVLYFFSLPLPAKI-------SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 157 ~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~-------~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) ...+..+..+.|+|+|||+.+|+.|++.+...+. +.+++|+|+.|++++++.|++++.+++.++.++|++.++ T Consensus 4 ~~~l~~l~~~~d~iifTS~~aV~~~~~~l~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~G~~~~~~p~~~~~e~L~~~l~ 83 (116) T 3d8t_A 4 RDQVRELAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLLPQ 83 (116) T ss_dssp HHHHHHHTTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSSGGGGGGGCCC T ss_pred HHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHCCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHC T ss_conf 99999751589999998879999999999980975546631786999870189999987998430785468999986630 Q ss_pred HC Q ss_conf 14 Q gi|255764510|r 230 LR 231 (232) Q Consensus 230 ~~ 231 (232) -. T Consensus 84 ~~ 85 (116) T 3d8t_A 84 GR 85 (116) T ss_dssp CC T ss_pred CC T ss_conf 89 No 5 >>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:48-161) Probab=98.64 E-value=2.5e-08 Score=68.88 Aligned_cols=71 Identities=17% Similarity=0.011 Sum_probs=60.0 Q ss_pred HHHHHCCCCEEEEECHHHHHHHHHHCCHHHC-------CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 9986237838998078999999971354405-------8039971889999999769966998799998899999861 Q gi|255764510|r 160 MKNLLQNADAILFYARSSVLYFFSLPLPAKI-------SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 160 ~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~-------~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) .+....+.|+|+|||+.+|+.|++.+..++. +.+++|+|+.|++++++.|+.++.+++..+.++|++.+.. T Consensus 6 ~~~i~~~~d~iiFTS~~~V~~~~~~~~~~~~~~~~~l~~~~i~avG~~Ta~~L~~~g~~~~~~p~~~~~e~L~~~~~~ 83 (114) T 1wcw_A 6 VRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPLLPQG 83 (114) T ss_dssp HHHHHTCCSEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHTTCCCSEECSSSHHHHGGGSCCC T ss_pred HHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 998517999999979899999999998739647678418859999789999999749997227513389999864358 No 6 >>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:57-195) Probab=98.50 E-value=3.6e-07 Score=61.93 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=56.3 Q ss_pred HCCCCEEEEECHHHHHHHHHHCCHHH-------------CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 23783899807899999997135440-------------58039971889999999769966998799998899999861 Q gi|255764510|r 164 LQNADAILFYARSSVLYFFSLPLPAK-------------ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 164 ~~~~d~i~f~S~~~v~~~~~~~~~~~-------------~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) +...|+|+|||+.+|+.|++.+...+ .+.+++|+|+.|++++++.|+.++ +++..+-++|++.+.. T Consensus 18 l~~~d~iiFTS~~aV~~~~~~l~~~~~~~~~~~~~~~~l~~~~i~~VG~~T~~~L~~~G~~~~-~~~~~~~~~L~~~l~~ 96 (139) T 1jr2_A 18 PEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTE-GETCGNAEKLAEYICS 96 (139) T ss_dssp GGGCSEEEECCHHHHHHHHHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHTTCCCS-CCSCSSHHHHHHHHHT T ss_pred HHHCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHH T ss_conf 200568999886999999999987276401245554212478599984999999998699333-6788899999999987 Q ss_pred C Q ss_conf 4 Q gi|255764510|r 231 R 231 (232) Q Consensus 231 ~ 231 (232) . T Consensus 97 ~ 97 (139) T 1jr2_A 97 R 97 (139) T ss_dssp S T ss_pred H T ss_conf 4 No 7 >>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:1-56,A:196-286) Probab=98.25 E-value=7.6e-06 Score=53.99 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=81.1 Q ss_pred CCCEEEEECCC----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH---HCCCCEEEEECHHHHHHHHHHCCH Q ss_conf 77538972156----75620146898469825676887504689998899986---237838998078999999971354 Q gi|255764510|r 115 PQKPLIYLGGK----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL---LQNADAILFYARSSVLYFFSLPLP 187 (232) Q Consensus 115 ~~~~vl~~~g~----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~---~~~~d~i~f~S~~~v~~~~~~~~~ 187 (232) +..+|+.+... .+.+-..+.|...|....-++|=- .-.++.. .+-+..|.||||+.+..-++.+.+ T Consensus 20 ~~MkVLLLKdpk~~~~g~DPYi~EL~~~g~~AtLiPvgi-------qgnlnsyysqqgvpasitFFSPSGltYslkhiqe 92 (147) T 1jr2_A 20 RHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVGI-------QGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQE 92 (147) T ss_dssp --CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECTH-------HHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHH T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCC-------CHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 633899977999777765899999998899789989852-------0889999873468719997498999999999987 Q ss_pred H----HCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC Q ss_conf 4----0580399718899999997699669987999988999998614 Q gi|255764510|r 188 A----KISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPLR 231 (232) Q Consensus 188 ~----~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~ 231 (232) . ..++++++||++|+.++.+.||.+...|.+|+.++|.+.|++. T Consensus 93 lsgdniDqiK~~aiGptt~ral~a~g~pV~cTAesPtPq~LaagIRkA 140 (147) T 1jr2_A 93 LSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGIRKA 140 (147) T ss_dssp HHGGGGGGSEEEESSHHHHHHHHHTTCCCSEECSSSSHHHHHHHHHHH T ss_pred HHHCCCCCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHH T ss_conf 404243681999999999999997699846997989979999999999 No 8 >>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porphyria, structural genomics, riken structural genomics/proteomics initiative; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A (A:1-47,A:162-261) Probab=96.03 E-value=0.024 Score=33.02 Aligned_cols=107 Identities=17% Similarity=0.066 Sum_probs=71.5 Q ss_pred CCCCCCCHHHHHHHCCCEEEEEE----------EEEECCCCCCHHHHHHH--HCCCCEEEEECHHHHHHHHHHCCHHH-- Q ss_conf 56756201468984698256768----------87504689998899986--23783899807899999997135440-- Q gi|255764510|r 124 GKPRNFHFEDYLIEHKIPLRVID----------CYYSQDIAYPETTMKNL--LQNADAILFYARSSVLYFFSLPLPAK-- 189 (232) Q Consensus 124 g~~~~~~l~~~L~~~g~~v~~~~----------vY~~~~~~~~~~~~~~~--~~~~d~i~f~S~~~v~~~~~~~~~~~-- 189 (232) |-...+.+..--.+.|+...-.+ .|+..|.+.-.--+.++ .+..|++.|..+-.++.+++-.+..+ T Consensus 15 glrrke~fkalaeklgf~pllfpvqatekvpvppyrhlpdpegilrleeallrgevdalafvaaiqveflfegakdpkal 94 (147) T 1wcw_A 15 GLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKAL 94 (147) T ss_dssp CSTTHHHHHHHHHHTTCEEEECCCEEEEECCGGSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHH T ss_pred CHHHHHHHHHHHHHCCCEEEEECHHHEECCCHHEEEECCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHH T ss_conf 31108999999997799089814165145881586524765789999988633882399965899999999986430145 Q ss_pred -----CCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf -----58039971889999999769966998799998899999861 Q gi|255764510|r 190 -----ISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 190 -----~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) ..++.++.|..||+++++-|.++.+|-+.-...+.+..+.| T Consensus 95 realntrvkalavgrvtadalrewgvkpfyvdeteRLGSALQgLKR 140 (147) T 1wcw_A 95 REALNTRVKALAVGRVTADALREWGVKPFYVDETERLGSLLQGFKR 140 (147) T ss_dssp HHHHHHTSEEEEESHHHHHHHHHTTCCCSEEECSCCHHHHHHHHHH T ss_pred HHHHHCCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH T ss_conf 8986179789998999999999869983698389998999999999 No 9 >>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A (A:1-63,A:194-286) Probab=94.47 E-value=0.31 Score=26.34 Aligned_cols=105 Identities=17% Similarity=0.096 Sum_probs=78.5 Q ss_pred EEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHH--HHCCCCEEEEECHHHHHHHHHHCCHH-------HC Q ss_conf 9721567562014689846982567688750468999889998--62378389980789999999713544-------05 Q gi|255764510|r 120 IYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKN--LLQNADAILFYARSSVLYFFSLPLPA-------KI 190 (232) Q Consensus 120 l~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~--~~~~~d~i~f~S~~~v~~~~~~~~~~-------~~ 190 (232) .-..|-....++...+.+.|+.---.++-+-. --+.+ +.+.+|++.|..+-.++.+++-.+.. +. T Consensus 36 ~AyaglrRKeeFKalaEKlgftpLLFpvpegi------lrleeavlrgevdalafvaaiqveflfegakdpkalrealnt 109 (156) T 3d8t_A 36 IAYAGLRRKEEFKALAEKLGFTPLLFPVPEGI------LRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNT 109 (156) T ss_dssp EEECCSSCHHHHHHHHHHHTCEEEECCCHHHH------HHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHHHHHTT T ss_pred EEECCCCHHHHHHHHHHHCCCEEEEECHCCCH------HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 88626153899999999769909981306888------999998764785299967999999999986431145787506 Q ss_pred CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 8039971889999999769966998799998899999861 Q gi|255764510|r 191 SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 191 ~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) .++.++.|..||+++++-|.++.+|-+.-...+|+.-+.| T Consensus 110 rvkalavgrvtadalrewgvkpfyvdeterlgslMqgfkR 149 (156) T 3d8t_A 110 RVKALAVGRVTADALREWGVKPFYVDETERLGSLLQGFKR 149 (156) T ss_dssp TSEEEEESHHHHHHHHHTTCCCSEEECSSCHHHHHHHHHH T ss_pred CCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHH T ss_conf 9789998999999999869983798189998999999999 No 10 >>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} (A:1-56,A:196-286) Probab=94.35 E-value=0.088 Score=29.60 Aligned_cols=103 Identities=15% Similarity=0.123 Sum_probs=68.2 Q ss_pred CEEEEEC-CHH---HHHHHHHHHHHCCCCEEEECC-EEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH-------C Q ss_conf 9389858-968---869999999987982999421-000007852001644758799984846799988620-------0 Q gi|255764510|r 1 MYIVITR-PIK---KALRTQEKIQKMGYIPVMMPL-SYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF-------C 68 (232) Q Consensus 1 M~ilitR-p~~---~a~~~~~~L~~~G~~~i~~Pl-i~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~-------~ 68 (232) |+||+.. |.+ ..+..++.|..+|.++...|+ |.-. + +.-..+..--.-|-|-||.++.+-..+. . T Consensus 22 MkVLLLKdpk~~~~g~DPYi~EL~~~g~~AtLiPvgiqgn-l--nsyysqqgvpasitFFSPSGltYslkhiqelsgdni 98 (147) T 1jr2_A 22 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVGIQGN-L--NSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNI 98 (147) T ss_dssp CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECTHHHH-H--HHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGG T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHH-H--HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCC T ss_conf 3899977999777765899999998899789989852088-9--999873468719997498999999999987404243 Q ss_pred CCCCEECCCHHHHHHHHHHCCCCCCCCCCC-HHHHHHHH Q ss_conf 136300041589999764101223544454-56789998 Q gi|255764510|r 69 RHTPIFAIGEASACLARQKGFTQIFHGKDN-SINLAKII 106 (232) Q Consensus 69 ~~~~~~~vg~~t~~~~~~~~~~~~~~~~~~-~~~~~~ll 106 (232) ..+++.++|.+|..++...+......+..+ -..++.-+ T Consensus 99 DqiK~~aiGptt~ral~a~g~pV~cTAesPtPq~LaagI 137 (147) T 1jr2_A 99 DQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGI 137 (147) T ss_dssp GGSEEEESSHHHHHHHHHTTCCCSEECSSSSHHHHHHHH T ss_pred CCCEEEEECHHHHHHHHHCCCCCEEEECCCCHHHHHHHH T ss_conf 681999999999999997699846997989979999999 No 11 >>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} (A:) Probab=86.24 E-value=2.1 Score=21.35 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=72.8 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE------------CC-CCCCHHHHHHH-HCCCCEEEEECHH--H Q ss_conf 7775389721567562014689846982567688750------------46-89998899986-2378389980789--9 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS------------QD-IAYPETTMKNL-LQNADAILFYARS--S 177 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~------------~~-~~~~~~~~~~~-~~~~d~i~f~S~~--~ 177 (232) ...++++++.+......+.+.|.+.|+.|.-+.--.. .. .....+.+..+ .++.|+|+..++. . T Consensus 4 ~~~~~v~IiG~G~iG~~ia~~L~~~G~~V~vid~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (141) T 3llv_A 4 NGRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEF 83 (141) T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHH T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCEEEEEECCCHH T ss_conf 88796999899889999999999879938997433889999870783799944543567765557526899998388589 Q ss_pred HHHHHHHCCHHHCC-EEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 99999713544058-039971889999999769966998799998899999861 Q gi|255764510|r 178 VLYFFSLPLPAKIS-AAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 178 v~~~~~~~~~~~~~-~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) ...........+.. +...+-++.-.+.+++.|...++.+.......+.+++.+ T Consensus 84 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~g~~~vi~~~~~~~~~l~~~i~~ 137 (141) T 3llv_A 84 NLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVADAVKQAFXDKIKK 137 (141) T ss_dssp HHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHH T ss_conf 999999999769981999988988999999779899997799999999999851 No 12 >>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} (A:124-242) Probab=85.58 E-value=1.8 Score=21.71 Aligned_cols=85 Identities=9% Similarity=-0.020 Sum_probs=57.2 Q ss_pred CCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEE-EECHHHHHHHHHHCC Q ss_conf 777538972156-----756201468984698256768875046899988999862-3783899-807899999997135 Q gi|255764510|r 114 TPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAIL-FYARSSVLYFFSLPL 186 (232) Q Consensus 114 ~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~-f~S~~~v~~~~~~~~ 186 (232) .+.+++.++..+ ...+.+.+.|++.|..+.....|..-.. +....+..+. .++|+|+ +.++.....+++.+. T Consensus 14 ~~~~~v~ii~~d~~~g~~~~~~~~~~l~~~G~~iv~~~~~~~~~~-d~~~~i~~i~~~~~d~v~~~~~~~~~~~i~~~~~ 92 (119) T 3hut_A 14 DGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNR-RFDDVIDEIEDEAPQAIYLAXAYEDAAPFLRALR 92 (119) T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCC-CCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHH T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC-CHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH T ss_conf 078169996056726589999986445406978999995599873-1158999998659999999736688999999999 Q ss_pred HHHCCEEEEECCH Q ss_conf 4405803997188 Q gi|255764510|r 187 PAKISAAFLCLSN 199 (232) Q Consensus 187 ~~~~~~~~~~ig~ 199 (232) ..+.+..+++.+. T Consensus 93 ~~G~~~~~~~~~~ 105 (119) T 3hut_A 93 ARGSALPVYGSSA 105 (119) T ss_dssp HTTCCCCEEECGG T ss_pred HCCCCCCEEEECC T ss_conf 8199986564205 No 13 >>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} (A:) Probab=85.22 E-value=1.3 Score=22.57 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=42.5 Q ss_pred CEEEEEC--CHHH----HHHHHHHHHHCCCCEEEECCEEEECCC----------CC--CCCCCCCCCCEEEEECH----- Q ss_conf 9389858--9688----699999999879829994210000078----------52--00164475879998484----- Q gi|255764510|r 1 MYIVITR--PIKK----ALRTQEKIQKMGYIPVMMPLSYFIHDR----------ES--VFLAMQQSYGAIAITSS----- 57 (232) Q Consensus 1 M~ilitR--p~~~----a~~~~~~L~~~G~~~i~~Pli~i~~~~----------~~--~~~~~~~~~d~iiftS~----- 57 (232) ||||+.= |... ++.+++.+++.|+++-.+.+-+..+.+ ++ .....+.++|.|||.|| T Consensus 6 mKilvi~gS~~g~t~~la~~~~~~l~~~g~~v~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~iIi~sP~y~~~ 85 (200) T 2a5l_A 6 PYILVLYYSRHGATAEXARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGN 85 (200) T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTB T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCEEEEECCHHHHC T ss_conf 82899994898189999999999885449768987436621688998640320135223411164488889955605403 Q ss_pred --HHHHHHHHHH Q ss_conf --6799988620 Q gi|255764510|r 58 --ESLSTLPANF 67 (232) Q Consensus 58 --~av~~~~~~~ 67 (232) -.++.+.... T Consensus 86 ~p~~lK~~iD~~ 97 (200) T 2a5l_A 86 XASPLKYFLDGT 97 (200) T ss_dssp CCHHHHHHHHTC T ss_pred CCHHHHHHHHHH T ss_conf 309999999874 No 14 >>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii DSM2661} (A:) Probab=84.69 E-value=2.5 Score=20.90 Aligned_cols=77 Identities=19% Similarity=0.173 Sum_probs=51.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHH---------HHHCCCC Q ss_conf 9389858968869999999987982999421000007852001644758799984846799988---------6200136 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLP---------ANFCRHT 71 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~---------~~~~~~~ 71 (232) |||+|..-...-..+.+.|++.|+++...| ...++.+||.||++-..+...-. ....... T Consensus 1 m~i~vid~~~~~~~~~~~l~~~g~~~~~~~-----------~~~~l~~~dgivi~GG~~~~~~~~~~~~~li~~~~~~~~ 69 (186) T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVK-----------RVEDLEGIDALIIPGGESTAIGKLMKKYGLLEKIKNSNL 69 (186) T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEEC-----------SGGGGTTCSEEEECCSCHHHHHHHHHHTTHHHHHHTCCC T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHCCCC T ss_conf 989999268879999999998799399988-----------989950778689889998512211112104567750798 Q ss_pred CEECCCHHHHHHHHHHC Q ss_conf 30004158999976410 Q gi|255764510|r 72 PIFAIGEASACLARQKG 88 (232) Q Consensus 72 ~~~~vg~~t~~~~~~~~ 88 (232) |++.+--+-.-.....+ T Consensus 70 PilGiC~G~Q~l~~~~~ 86 (186) T 2ywj_A 70 PILGTCAGMVLLSKGTG 86 (186) T ss_dssp CEEEETHHHHHHSSCCS T ss_pred CEEEEHHHHHHHHHHCC T ss_conf 38987134677777608 No 15 >>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} (A:122-254,A:330-346) Probab=84.11 E-value=2.6 Score=20.75 Aligned_cols=96 Identities=6% Similarity=0.008 Sum_probs=63.8 Q ss_pred CCCCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCC Q ss_conf 277753897215-----67562014689846982567688750468999889998623783899-807899999997135 Q gi|255764510|r 113 FTPQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPL 186 (232) Q Consensus 113 ~~~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~ 186 (232) ..+.+++.++.. ......+.+.+++.|..|.....|..-..+......+....++|+|+ +.++.....|++.+. T Consensus 14 ~~~~k~vaii~~d~~~G~~~~~~~~~~l~~~G~~vv~~~~~~~~~~d~~~~i~~i~~~~~d~Ii~~~~~~~~~~~~~~~~ 93 (150) T 1usg_A 14 TVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQAR 93 (150) T ss_dssp TTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHEEEECC T ss_conf 24552036741652012567877655441344227888733621110136888887538746999744434432141012 Q ss_pred HHHCCEEEEEC----CHHHHHHHHHC Q ss_conf 44058039971----88999999976 Q gi|255764510|r 187 PAKISAAFLCL----SNNIASAIPAS 208 (232) Q Consensus 187 ~~~~~~~~~~i----g~~tA~~~~~~ 208 (232) ..+.+..++.. ++...+.+.+. T Consensus 94 ~~g~~~~~~~~~~~~~~~~~~~~g~~ 119 (150) T 1usg_A 94 SVGLKTQFMGPEGVGNASLSNIAGDA 119 (150) T ss_dssp HTTCCCEEEECGGGCCTTHHHHHGGG T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCC T ss_conf 23556303310001465312111123 No 16 >>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} (A:) Probab=83.17 E-value=1.4 Score=22.47 Aligned_cols=55 Identities=16% Similarity=0.015 Sum_probs=29.3 Q ss_pred HHHHHHHHHHCCCCEEEECCEE--EECCC---------CC--CCCCCCCCCCEEEEECH-------HHHHHHHHH Q ss_conf 6999999998798299942100--00078---------52--00164475879998484-------679998862 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSY--FIHDR---------ES--VFLAMQQSYGAIAITSS-------ESLSTLPAN 66 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~--i~~~~---------~~--~~~~~~~~~d~iiftS~-------~av~~~~~~ 66 (232) +....+.+++.|.++-.+-+-+ +.+.. ++ .....+..+|.|||.|| -.++.+... T Consensus 21 a~~~~~~~~~~g~ev~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~~P~y~~~~p~~lK~~lD~ 95 (199) T 2zki_A 21 AKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRYGNMAGGLKTFLDT 95 (199) T ss_dssp HHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBTTBCCHHHHHHHHT T ss_pred HHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCEECHHHHHCCCEEEEECCHHHCCCCCHHHHHHHH T ss_conf 999999997649889999806778788997157764688601247566108855883351120366235568888 No 17 >>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} (A:264-410) Probab=81.84 E-value=1.5 Score=22.28 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=25.2 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 6999999998798299942100000785200164475879998484 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) +..+++.|++.|.++..+.+-+..+...+....++.++|.|||.+| T Consensus 20 a~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~i~~~d~ii~~~p 65 (147) T 1vme_A 20 XKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVS 65 (147) T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEEC T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECC T ss_conf 9999999986699249998522787862255677732998999867 No 18 >>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} (B:) Probab=81.49 E-value=1 Score=23.15 Aligned_cols=81 Identities=7% Similarity=0.005 Sum_probs=50.1 Q ss_pred CEEEEEC-CHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH----HHH---------HHHH Q ss_conf 9389858-9688699999999879829994210000078520016447587999848467----999---------8862 Q gi|255764510|r 1 MYIVITR-PIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES----LST---------LPAN 66 (232) Q Consensus 1 M~ilitR-p~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a----v~~---------~~~~ 66 (232) |||+|.. +......+.+.|+..|+++...|.-.. ....+.++|.||++-... ... +... T Consensus 1 mrI~vid~~~~~~~~~~~~l~~~g~~~~v~~~~~~-------~~~~l~~~D~iil~Gg~~~~~~~~~~~~~~~~~~i~~~ 73 (201) T 1gpw_B 1 MRIGIISVGPGNIMNLYRGVKRASENFEDVSIELV-------ESPRNDLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKH 73 (201) T ss_dssp CEEEEECCSSSCCHHHHHHHHHHSTTBSSCEEEEE-------CSCCSSCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCCEECEEEC-------CHHHHHHCCEEEECCCCCHHHHHHHHHHCCCHHHHHHH T ss_conf 98999948985899999999984762552012645-------87785105857978998277889998864618899999 Q ss_pred HCCCCCEECCCHHHHHHHHHHC Q ss_conf 0013630004158999976410 Q gi|255764510|r 67 FCRHTPIFAIGEASACLARQKG 88 (232) Q Consensus 67 ~~~~~~~~~vg~~t~~~~~~~~ 88 (232) ..+..|++.+-.+-.-.....+ T Consensus 74 ~~~~~PilGIC~G~Q~L~~~~g 95 (201) T 1gpw_B 74 VEDERYVVGVCLGMQLLFEESE 95 (201) T ss_dssp HHTTCEEEEETHHHHTTSSEET T ss_pred HHCCCCEEEHHHHHHHHHHHCC T ss_conf 8608846513378786545315 No 19 >>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, protein structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} (A:) Probab=81.43 E-value=3.3 Score=20.12 Aligned_cols=116 Identities=14% Similarity=0.018 Sum_probs=69.9 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE------------EEECCCC-CCHHHHHHH-HCCCCEEEEECHHHHH Q ss_conf 7775389721567562014689846982567688------------7504689-998899986-2378389980789999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC------------YYSQDIA-YPETTMKNL-LQNADAILFYARSSVL 179 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v------------Y~~~~~~-~~~~~~~~~-~~~~d~i~f~S~~~v~ 179 (232) ...++++++..+.....+.+.|++.|..|.-+.. |....-+ ...+.+..+ +.+.++|+++.+.-.. T Consensus 5 ~~~~~iiIiG~g~~g~~ia~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~a~~vi~~~~~d~~ 84 (140) T 3fwz_A 5 DICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIXQLAHLECAKWLILTIPNGYE 84 (140) T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCCEEEECCCCHHH T ss_conf 67799999896889999999999779988999898899999996298389727889999950382418899987898589 Q ss_pred HH--HHHCCHHHCCEE--EEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 99--971354405803--997188999999976996699879999889999986 Q gi|255764510|r 180 YF--FSLPLPAKISAA--FLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 180 ~~--~~~~~~~~~~~~--~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) +. ............ ..+-++.-++.+++.|...++.+..-.-+.|...+. T Consensus 85 n~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vv~~~~~~a~~l~~~~~ 138 (140) T 3fwz_A 85 AGEIVASARAKNPDIEIIARAHYDDEVAYITERGANQVVXGEREIARTXLELLE 138 (140) T ss_dssp HHHHHHHHHHHCSSSEEEEEESSHHHHHHHHHTTCSEEEEHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC T ss_conf 999999999978998499998999999999977999999879999999999835 No 20 >>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} (A:125-258,A:355-392) Probab=80.96 E-value=3.5 Score=20.03 Aligned_cols=106 Identities=5% Similarity=-0.085 Sum_probs=67.1 Q ss_pred HHHHHHHCCCCCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHH Q ss_conf 98642201277753897215-----67562014689846982567688750468999889998623783899-8078999 Q gi|255764510|r 105 IIVEQKVLFTPQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSV 178 (232) Q Consensus 105 ll~~~~~~~~~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v 178 (232) .+.+......+.+++.++.. ....+.+.+.|++.|+.+.....|.....+...........++|+|+ +.++... T Consensus 8 ala~~i~~~~g~k~Vaii~~d~~~G~~~~~~f~~~l~~~G~evv~~~~~~~~~~d~s~~i~~ik~a~pdvVv~~~~~~~~ 87 (172) T 3lkb_A 8 ALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPV 87 (172) T ss_dssp HHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHH T ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH T ss_conf 89999987628977999933563038999999999987498799998148997235578887653699899993662679 Q ss_pred HHHHHHCCHHHCCEEEEE----CCHHHHHHHHHCCC Q ss_conf 999971354405803997----18899999997699 Q gi|255764510|r 179 LYFFSLPLPAKISAAFLC----LSNNIASAIPASYK 210 (232) Q Consensus 179 ~~~~~~~~~~~~~~~~~~----ig~~tA~~~~~~g~ 210 (232) ..+++.+...+....++. .++...+.+.+..- T Consensus 88 ~~ilk~a~~~G~~~~~i~~~~~~~~~~~~~~g~~~e 123 (172) T 3lkb_A 88 ANILKDAKRLGLKMRHLGAHYTGGPDLIALAGDAAE 123 (172) T ss_dssp HHHHHHHHHTTCCCEEEECGGGCSHHHHHHHGGGGT T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC T ss_conf 999999998399964999556788889988788758 No 21 >>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} (A:140-279,A:378-419) Probab=79.95 E-value=3.7 Score=19.82 Aligned_cols=100 Identities=8% Similarity=0.014 Sum_probs=64.8 Q ss_pred HHHHCCCCCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEE--ECHHHHHH Q ss_conf 4220127775389721567-----5620146898469825676887504689998899986237838998--07899999 Q gi|255764510|r 108 EQKVLFTPQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILF--YARSSVLY 180 (232) Q Consensus 108 ~~~~~~~~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f--~S~~~v~~ 180 (232) .......+.+++.++..+. ....+.+.+++.|..|.....|............+....+.|.|++ +++..... T Consensus 17 ~~l~~~~g~kkVaii~~d~~yG~~~~~~f~~~l~~~G~~Vv~~~~~~~~~~d~~~~i~~i~~a~~d~Viv~~~~~~~~~~ 96 (182) T 3h5l_A 17 DNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTHFYPQDQAL 96 (182) T ss_dssp HTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHH T ss_pred HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHH T ss_conf 77763268878999953743778999999999997325222101255321210046666530499789997227324589 Q ss_pred HHHHCCHHHCCEEEEEC----CHHHHHHHHH Q ss_conf 99713544058039971----8899999997 Q gi|255764510|r 181 FFSLPLPAKISAAFLCL----SNNIASAIPA 207 (232) Q Consensus 181 ~~~~~~~~~~~~~~~~i----g~~tA~~~~~ 207 (232) |++.+...+.+..++.. ++.+.+...+ T Consensus 97 ~lkq~~~~G~~~~ii~~~~~~~~~~~~~~g~ 127 (182) T 3h5l_A 97 FMNQFMTDPTNSLVYLQYGASLAAFRDIAGD 127 (182) T ss_dssp HHHHHTTSCCSCEEEECSGGGSHHHHHHHGG T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHHH T ss_conf 9999875146872999626663788865465 No 22 >>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} (A:123-258,A:339-364) Probab=79.77 E-value=3.8 Score=19.79 Aligned_cols=83 Identities=16% Similarity=0.067 Sum_probs=56.1 Q ss_pred CCCCEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEE-EECHHHHHHHHHHCC Q ss_conf 77753897215-----675620146898469825676887504689998899986-23783899-807899999997135 Q gi|255764510|r 114 TPQKPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAIL-FYARSSVLYFFSLPL 186 (232) Q Consensus 114 ~~~~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~-f~S~~~v~~~~~~~~ 186 (232) .+.+++.++.. ....+.+.+.+++.|..+....-|..-... ....+..+ ..++|+|+ +..+.....|++.+. T Consensus 17 ~g~~~Vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d-~~~~v~~i~~~~pdvIv~~~~~~~~~~~~~~~~ 95 (162) T 3lop_A 17 IGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAXASYPRNTAN-VGPAVDKLLAADVQAIFLGATAEPAAQFVRQYR 95 (162) T ss_dssp TTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTTSCC-CHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHH T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCC-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH T ss_conf 1998899998368326999999999999769889999983798853-689999998579899999687899999999999 Q ss_pred HHHCCEEEEEC Q ss_conf 44058039971 Q gi|255764510|r 187 PAKISAAFLCL 197 (232) Q Consensus 187 ~~~~~~~~~~i 197 (232) ..+....+++. T Consensus 96 ~~g~~~~~i~~ 106 (162) T 3lop_A 96 ARGGEAQLLGL 106 (162) T ss_dssp HTTCCCEEEEC T ss_pred HHCCCCEEEEE T ss_conf 83899769997 No 23 >>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:1-100,A:289-321) Probab=79.46 E-value=3.4 Score=20.04 Aligned_cols=93 Identities=14% Similarity=0.176 Sum_probs=49.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCE---ECCC Q ss_conf 9389858968869999999987982999421000007852001644758799984846799988620013630---0041 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPI---FAIG 77 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~---~~vg 77 (232) ||||++.+.. ....++|++.+...+..+--.. ..+.....+.++|+++..+...+..-......+.++ +.+| T Consensus 5 mKILi~~~~~--~~~~~~l~~~~~~~~~~~~~~~---~~eel~~~l~~adaii~~~~~~i~~~~L~~~p~LK~I~~~gvG 79 (133) T 1sc6_A 5 IKFLLVEGVH--QKALESLRAAGYTNIEFHKGAL---DDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIG 79 (133) T ss_dssp CCEEECSCCC--HHHHHHHHHTTCCCEEECSSCC---CHHHHHHHTTSCSEEEECSSCCBCHHHHHHCSSCCEEEECSSC T ss_pred CEEEECCCCC--HHHHHHHHHCCCEEEEECCCCC---CHHHHHHHCCCCEEEEECCCCCCCHHHHHCCCCCEEEEECCCC T ss_conf 8899918999--9999999978998999689999---9999998708976999878998599999508987499994753 Q ss_pred HH--HHHHHHHHCCCCCCCCCCC Q ss_conf 58--9999764101223544454 Q gi|255764510|r 78 EA--SACLARQKGFTQIFHGKDN 98 (232) Q Consensus 78 ~~--t~~~~~~~~~~~~~~~~~~ 98 (232) -. --.++.+.|......+.+. T Consensus 80 ~D~IDl~aa~erGI~V~N~pg~~ 102 (133) T 1sc6_A 80 TNQVDLDAAAKRGIPVFNAPFGS 102 (133) T ss_dssp CTTBCHHHHHHTTCCEECCTTCC T ss_pred CCCHHCCCCCCCCEEEEECCCCC T ss_conf 36410030103320146315757 No 24 >>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} (A:276-325) Probab=78.54 E-value=1.3 Score=22.61 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=23.1 Q ss_pred CEEEEECCH-----HHHHHHHHHHHHCCCCEEEECCE Q ss_conf 938985896-----88699999999879829994210 Q gi|255764510|r 1 MYIVITRPI-----KKALRTQEKIQKMGYIPVMMPLS 32 (232) Q Consensus 1 M~ilitRp~-----~~a~~~~~~L~~~G~~~i~~Pli 32 (232) |++|...|. .+...+++.|+++|++++.+|+- T Consensus 10 mNvL~ld~~~ViVe~~e~~li~~lek~Gf~vIpv~~r 46 (50) T 1bwd_A 10 MNLLVVRPDLAVVDRRQTALIRLLEKHGMNVLPLQLT 46 (50) T ss_dssp GCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCT T ss_pred EEEEEECCCEEEEECCCHHHHHHHHHCCCEEEEECHH T ss_conf 6799977999999398899999999888999991605 No 25 >>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} (A:351-400) Probab=78.17 E-value=1.3 Score=22.50 Aligned_cols=32 Identities=13% Similarity=0.297 Sum_probs=23.0 Q ss_pred CEEEEECCH-----HHHHHHHHHHHHCCCCEEEECCE Q ss_conf 938985896-----88699999999879829994210 Q gi|255764510|r 1 MYIVITRPI-----KKALRTQEKIQKMGYIPVMMPLS 32 (232) Q Consensus 1 M~ilitRp~-----~~a~~~~~~L~~~G~~~i~~Pli 32 (232) |++|..+|. .+...+++.|+++|++++.+|+- T Consensus 10 mNvL~ld~~~VvVe~~e~~li~~lek~Gf~~ip~~~r 46 (50) T 1jdw_A 10 MNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIR 46 (50) T ss_dssp GCCEEEETTEEEEETTCHHHHHHHHHTTCEEEEECCH T ss_pred EEEEEECCCEEEECCCCHHHHHHHHHCCCEEEEECCE T ss_conf 8899976999998698799999999888989990763 No 26 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:1-118,A:269-356) Probab=77.86 E-value=4.3 Score=19.44 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=50.3 Q ss_pred EEEECCHHHHHHHHHHHHHCCCC-EEEECCEEEECCCCCCC-----------C-CCCCCCCEEEEECHHHHHH------H Q ss_conf 89858968869999999987982-99942100000785200-----------1-6447587999848467999------8 Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKMGYI-PVMMPLSYFIHDRESVF-----------L-AMQQSYGAIAITSSESLST------L 63 (232) Q Consensus 3 ilitRp~~~a~~~~~~L~~~G~~-~i~~Pli~i~~~~~~~~-----------~-~~~~~~d~iiftS~~av~~------~ 63 (232) |+||.....+.++.+.|.-.+-+ +..+|--++.|.+.... + .....-..||+||.+++-. + T Consensus 46 lvVt~d~~~A~~l~~dL~ff~~~~V~~fP~~e~lPYd~~sp~~di~s~Rl~~L~~L~~~~~~iiVts~~allq~~~~~tl 125 (206) T 2eyq_A 46 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQSEPLPPL 125 (206) T ss_dssp EEEESSHHHHHHHHHHHGGGCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSEEEEEEHHHHTBSSCCCBG T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCCCCH T ss_conf 99908999999999999850796310788534576666798626999999999998747999999757997257887758 Q ss_pred HHHHCCCCCEECCCHH Q ss_conf 8620013630004158 Q gi|255764510|r 64 PANFCRHTPIFAIGEA 79 (232) Q Consensus 64 ~~~~~~~~~~~~vg~~ 79 (232) +.++..+..+...+.. T Consensus 126 fDYLp~~~~~~~~~~~ 141 (206) T 2eyq_A 126 FSYFPANTLLVNTGDL 141 (206) T ss_dssp GGGSCTTCEEEEESCH T ss_pred HHHCCCHHHCCCCHHH T ss_conf 8747510110230678 No 27 >>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745} (A:) Probab=74.91 E-value=5.2 Score=18.95 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=17.0 Q ss_pred HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECH Q ss_conf 146898469825676887504689998899986237838998078 Q gi|255764510|r 131 FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYAR 175 (232) Q Consensus 131 l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~ 175 (232) +.+.+.+.|..++.+.+|+. +..+...+.+...|.|+|.|| T Consensus 20 ~~~~~~~~g~~v~~~dl~~~----dd~~~~~~~l~~AD~iV~~~P 60 (177) T 3ha2_A 20 FFKAAIENFSNVTWHPLVAD----FNVEQEQSLLLQNDRIILEFP 60 (177) T ss_dssp HHHHHHTTCTTEEEEECCTT----CCHHHHHHHHHTCSEEEEEEE T ss_pred HHHHHHHCCCCEEEEECCCC----CCHHHHHHHHHHCCEEEEECC T ss_conf 99999856896699826774----359999999971998999768 No 28 >>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} (A:) Probab=74.25 E-value=3.8 Score=19.81 Aligned_cols=58 Identities=5% Similarity=-0.078 Sum_probs=31.2 Q ss_pred CEEEEE--CCHHH----HHHHHHHHHHCCCCEEEECCEEEEC--CCCCC-CCCCCCCCCEEEEECHH Q ss_conf 938985--89688----6999999998798299942100000--78520-01644758799984846 Q gi|255764510|r 1 MYIVIT--RPIKK----ALRTQEKIQKMGYIPVMMPLSYFIH--DRESV-FLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilit--Rp~~~----a~~~~~~L~~~G~~~i~~Pli~i~~--~~~~~-~~~~~~~~d~iiftS~~ 58 (232) ||||+. .|.+. +..+++.+++.|.++-.+.+-+... .++.. ....+.++|.|||-||. T Consensus 2 mkilii~gS~~~~t~~la~~~~~~l~~~g~~v~~~~l~~~~~~~~dd~~~~~~~i~~aD~ii~~~P~ 68 (192) T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPI 68 (192) T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEEC T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCEEEEECCH T ss_conf 7699998198923569999999999955998789980222589721389999999859999997774 No 29 >>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} (A:1-225) Probab=73.90 E-value=3 Score=20.35 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=18.8 Q ss_pred CEEEEE----CCHHHH----HHHHHHHHHCCCCEEEECC Q ss_conf 938985----896886----9999999987982999421 Q gi|255764510|r 1 MYIVIT----RPIKKA----LRTQEKIQKMGYIPVMMPL 31 (232) Q Consensus 1 M~ilit----Rp~~~a----~~~~~~L~~~G~~~i~~Pl 31 (232) ||||+. |+...+ ..+++.+++.|.++-.+-+ T Consensus 3 mkiLiI~gSpr~~s~t~~l~~~~~~~l~~~g~~~~~i~l 41 (225) T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDL 41 (225) T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 659999818998656999986207899978897999987 No 30 >>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:1-96,A:280-311) Probab=73.30 E-value=3.6 Score=19.93 Aligned_cols=90 Identities=11% Similarity=0.104 Sum_probs=45.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEECCCHH Q ss_conf 938985896886999999998798299942100000785200164475879998484679-9988620013630004158 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIFAIGEA 79 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~~vg~~ 79 (232) ||||++++.+.. ..+.|++.|......+.-. .........+.++|.|+..+..-+ +-+.....+-.-+...|.+ T Consensus 1 MKVLi~~~~~~~--~~e~L~~~~~~~~~~~~~~---~~~eel~~~i~~~d~Iii~~~~~i~~e~L~~~p~LKlI~~~g~G 75 (128) T 2cuk_A 1 MRVLVTRTLPGK--ALDRLRERGLEVEVHRGLF---LPKAELLKRVEGAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVG 75 (128) T ss_dssp CEEEESSCCSSS--TTHHHHHTTCEEEECCSSC---CCHHHHHHHHTTCSEEECCTTSCBCHHHHHHSTTCCEEECSSSC T ss_pred CEEEEECCCCHH--HHHHHHHCCCEEEEECCCC---CCHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCEEEEECCC T ss_conf 989990789999--9999984799899807998---99999999708981999889998599999732235602110101 Q ss_pred ----HHHHHHHHCCCCCCCC Q ss_conf ----9999764101223544 Q gi|255764510|r 80 ----SACLARQKGFTQIFHG 95 (232) Q Consensus 80 ----t~~~~~~~~~~~~~~~ 95 (232) =.+++.+.|......+ T Consensus 76 ~d~IDv~aa~~rGI~V~N~p 95 (128) T 2cuk_A 76 VDHVDLEAARERGIRVTHTP 95 (128) T ss_dssp CTTBCHHHHHTTTCEEECCC T ss_pred CCCCCCCCCCCCCCCCCCCC T ss_conf 33333332223332102211 No 31 >>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, signaling protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* (A:170-304,A:441-482) Probab=72.50 E-value=6 Score=18.61 Aligned_cols=83 Identities=12% Similarity=0.054 Sum_probs=50.9 Q ss_pred CCCEEEEECCCC-----CCCCHHHHHHHCCCEEEEEEEEEECCCC--CCHHHHHHHH-CCCCEEE-EECHHHHHHHHHHC Q ss_conf 775389721567-----5620146898469825676887504689--9988999862-3783899-80789999999713 Q gi|255764510|r 115 PQKPLIYLGGKP-----RNFHFEDYLIEHKIPLRVIDCYYSQDIA--YPETTMKNLL-QNADAIL-FYARSSVLYFFSLP 185 (232) Q Consensus 115 ~~~~vl~~~g~~-----~~~~l~~~L~~~g~~v~~~~vY~~~~~~--~~~~~~~~~~-~~~d~i~-f~S~~~v~~~~~~~ 185 (232) +-++|.++..+. ..+.|.+.+++.|+.|.....|...+.. +....+..+. .+.++|+ +.++..+..+++.+ T Consensus 16 gwk~VaII~~dd~yG~~~~~~l~~~~~~~Gi~V~~~~~~~~~~~~~~d~~~~l~~i~~s~~~vVv~~~~~~~~~~il~~a 95 (177) T 2e4u_A 16 NWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAA 95 (177) T ss_dssp TCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHH T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHH T ss_conf 99589999844066779999999988864834999996578875777888777776526870899972508999999999 Q ss_pred CHHHCCEEEEEC Q ss_conf 544058039971 Q gi|255764510|r 186 LPAKISAAFLCL 197 (232) Q Consensus 186 ~~~~~~~~~~~i 197 (232) ...+.+..++.. T Consensus 96 ~~~Gl~~~~I~s 107 (177) T 2e4u_A 96 NRVNASFTWVAS 107 (177) T ss_dssp HHTTCCCEEEEC T ss_pred HHCCCCCCEEEE T ss_conf 980887638997 No 32 >>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} (A:) Probab=72.43 E-value=6 Score=18.59 Aligned_cols=113 Identities=12% Similarity=0.033 Sum_probs=59.6 Q ss_pred CEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEE----------------ECC-CCCCHHHHHHH-HCCCCEEEEECHHHH Q ss_conf 538972156756201468984698256768875----------------046-89998899986-237838998078999 Q gi|255764510|r 117 KPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYY----------------SQD-IAYPETTMKNL-LQNADAILFYARSSV 178 (232) Q Consensus 117 ~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~----------------~~~-~~~~~~~~~~~-~~~~d~i~f~S~~~v 178 (232) ++++++..+.....+.+.|.+.|..|.-+..-. ... .......+..+ +.+.|.++.+.+.-. T Consensus 4 ~~viIiG~G~~G~~ia~~L~~~g~~v~vid~d~~~~~~~~~~~~~~~~~~~~gD~~~~~~l~~a~i~~ad~vi~~~~~d~ 83 (153) T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153) T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHH T ss_conf 87999899989999999999769987999888377899999741389779995379989996368352999999848859 Q ss_pred HHHHH--HCCHHHC--CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 99997--1354405--803997188999999976996699879999889999986 Q gi|255764510|r 179 LYFFS--LPLPAKI--SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 179 ~~~~~--~~~~~~~--~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) ..+.- ....... .+...+-.+.-+..+++.|...+..+.....+.|...+. T Consensus 84 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~vi~~~~~~~~~l~~~~~ 138 (153) T 1id1_A 84 DNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLN 138 (153) T ss_dssp HHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC T ss_conf 9999999999978998399997899999999978999999989999999999837 No 33 >>1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} (A:) Probab=71.33 E-value=6.4 Score=18.43 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=19.0 Q ss_pred CEEEEE----CCHHH----HHHHHHHHHHCCCCEEEECC Q ss_conf 938985----89688----69999999987982999421 Q gi|255764510|r 1 MYIVIT----RPIKK----ALRTQEKIQKMGYIPVMMPL 31 (232) Q Consensus 1 M~ilit----Rp~~~----a~~~~~~L~~~G~~~i~~Pl 31 (232) ||||+. |+... +..+.+.+++.|.++-.+-+ T Consensus 3 mkil~I~gS~r~~s~t~~l~~~~~~~l~~~g~ev~~~~L 41 (230) T 1sg0_A 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL 41 (230) T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 879999858998568999999999999967997999987 No 34 >>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} (A:) Probab=71.29 E-value=6.4 Score=18.43 Aligned_cols=77 Identities=10% Similarity=0.091 Sum_probs=48.6 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH-HHHHH-----------HHHHHC Q ss_conf 938985896886999999998798299942100000785200164475879998484-67999-----------886200 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS-ESLST-----------LPANFC 68 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~-~av~~-----------~~~~~~ 68 (232) |||+|..-...-..+.+.|++.|+++..+|. ..++.++|.|+++-. ..+.. +..... T Consensus 2 ~~I~ii~~~~~~~~~~~~l~~~G~~v~~~~~-----------~~~l~~~Dgiii~GGp~~~~~~~~~~~~~~~~i~~~~~ 70 (196) T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR-----------PEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAA 70 (196) T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS-----------GGGGGGCSEEEECCSCHHHHHHHHHHTTCHHHHHHHHH T ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEECC-----------HHHHHHCCEEEECCCCCHHHHHHHHHCCCCCHHHHHCC T ss_conf 3999997078199999999987994999899-----------89982088799869872799997532200102231024 Q ss_pred CCCCEECCCHHHHHHHHHHC Q ss_conf 13630004158999976410 Q gi|255764510|r 69 RHTPIFAIGEASACLARQKG 88 (232) Q Consensus 69 ~~~~~~~vg~~t~~~~~~~~ 88 (232) ...|++.+-.+-.-.....+ T Consensus 71 ~~~PilGiC~G~Q~l~~~~g 90 (196) T 2nv0_A 71 QGKPMFGTCAGLIILAKEIA 90 (196) T ss_dssp TTCCEEEETHHHHHHSBCCC T ss_pred CCCEEEEECCCHHHHHHCCC T ss_conf 68546874467598863025 No 35 >>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} (A:1-17,A:159-274) Probab=71.08 E-value=6.4 Score=18.40 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=37.9 Q ss_pred CHHHCCEEEEEC--CHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC Q ss_conf 544058039971--8899999997699669987999988999998614 Q gi|255764510|r 186 LPAKISAAFLCL--SNNIASAIPASYKNVVTVACFPKETSLLKLLPLR 231 (232) Q Consensus 186 ~~~~~~~~~~~i--g~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~~ 231 (232) ...+.+..+++| |..-.++++.++|.-..+..+||.+++..+|..+ T Consensus 84 ~RfG~k~~fvvIGDG~eEe~AAk~l~~PFwrI~~~~Dl~~l~~aL~l~ 131 (133) T 3geb_A 84 QRFGRKAVYVVIGDGVEEEQGAKKHNMPFWRISCHADLEALRHALELE 131 (133) T ss_dssp HHHCTTSEEEEEESSHHHHHHHHHTTCCEEECCSHHHHHHHHHHHHHE T ss_pred HHHCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC T ss_conf 986897469997887778999985289858813780399987755313 No 36 >>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:1-91,A:282-324) Probab=70.72 E-value=6.6 Score=18.35 Aligned_cols=86 Identities=7% Similarity=-0.078 Sum_probs=46.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHHH Q ss_conf 93898589688699999999879829994210000078520016447587999848467999886200136300041589 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEAS 80 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~t 80 (232) ||||++++. .....+.|++.+......+ +.+.......++|.|+..+..--+.+.....+-.-+.+.|.++ T Consensus 2 mKILv~~~~--~~~~~e~L~~~~~~v~~~~-------~~del~e~i~~aDvIi~~~~~i~~elL~~~p~LK~Ia~~gaG~ 72 (134) T 3evt_A 2 SLVLMAQAT--KPEQLQQLQTTYPDWTFKD-------AAAVTAADYDQIEVMYGNHPLLKTILARPTNQLKFVQVISAGV 72 (134) T ss_dssp CEEEECSCC--CHHHHHHHHHHCTTCEEEE-------TTSCCTTTGGGEEEEESCCTHHHHHHHSTTCCCCEEECSSSCC T ss_pred CEEEECCCC--CHHHHHHHHHHCCCCEECC-------CHHCCCCCCCEEEEEEECCCCCHHHHHCCCCCCEEEEECCCCC T ss_conf 789989989--9899999884689854676-------0212303678049998289888999953547772999858767 Q ss_pred ----HHHHHHHCCCCCCCC Q ss_conf ----999764101223544 Q gi|255764510|r 81 ----ACLARQKGFTQIFHG 95 (232) Q Consensus 81 ----~~~~~~~~~~~~~~~ 95 (232) ..++.+.|......+ T Consensus 73 DnIDl~aa~erGI~VtNtP 91 (134) T 3evt_A 73 DYLPLKALQAAGVVVANTS 91 (134) T ss_dssp TTSCHHHHHHTTCEEECCT T ss_pred CCCCHHHHHHCCEEEEECC T ss_conf 8527798986790899428 No 37 >>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} (A:) Probab=70.56 E-value=6.6 Score=18.33 Aligned_cols=149 Identities=10% Similarity=-0.040 Sum_probs=84.5 Q ss_pred ECCCHHHHHHHHHHCCCCCCC--CCC-CHHHHH---HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE Q ss_conf 004158999976410122354--445-456789---99864220127775389721567562014689846982567688 Q gi|255764510|r 74 FAIGEASACLARQKGFTQIFH--GKD-NSINLA---KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC 147 (232) Q Consensus 74 ~~vg~~t~~~~~~~~~~~~~~--~~~-~~~~~~---~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v 147 (232) .++|-++..++.......... ... ...... ..+. ......++++|.++.. .-+...+++.+. ++.+ T Consensus 94 ralgiAalNA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~kV~vVG~----~P~i~~~~~~~~---~l~V 165 (270) T 2h1q_A 94 ASIGLAAINAYYNNPQVAREHGVIFSDAKRVEDRXNDPFI-XSQNEVKGKKVGVVGH----FPHLESLLEPIC---DLSI 165 (270) T ss_dssp HHHHHHHHHHHHTSHHHHHHTTCCCCCC-------CCHHH-HTTTTTTTSEEEEESC----CTTHHHHHTTTS---EEEE T ss_pred HHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHCCCCEEEEECC----CCCHHHHHHCCC---CEEE T ss_conf 9999999997654410000013554554310102478245-5422037998999926----735699985589---5799 Q ss_pred EEECCCCC--CHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC-EEEEECCHHHH--HHHHHCCCCEEEECCCCCHH Q ss_conf 75046899--988999862378389980789999999713544058-03997188999--99997699669987999988 Q gi|255764510|r 148 YYSQDIAY--PETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS-AAFLCLSNNIA--SAIPASYKNVVTVACFPKET 222 (232) Q Consensus 148 Y~~~~~~~--~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~-~~~~~ig~~tA--~~~~~~g~~~~~va~~p~~~ 222 (232) .++.|... ..+.....+...|+|++|.+.-+..=++.+.....+ ...+-+||++. -.+-..|...+.-..-.|.+ T Consensus 166 ~E~~p~~g~~~~~~~~~lLp~aD~V~iTGsTlvN~Tl~~lL~~a~~a~~vvl~GPS~~~~p~l~~~Gv~~lag~~v~d~~ 245 (270) T 2h1q_A 166 LEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFXVKDNA 245 (270) T ss_dssp EESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHH T ss_pred EECCCCCCCCCHHHHHHHHHCCCEEEEEEEHHHCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCCCEEEEEEECCHH T ss_conf 97788878887478787630188999985145517899999737667779998998645799894297768788872899 Q ss_pred HHHHHHHH Q ss_conf 99999861 Q gi|255764510|r 223 SLLKLLPL 230 (232) Q Consensus 223 ~ll~al~~ 230 (232) .++++|+. T Consensus 246 ~~~~~i~~ 253 (270) T 2h1q_A 246 RAFRIVAG 253 (270) T ss_dssp HHHHHHTT T ss_pred HHHHHHHC T ss_conf 99999972 No 38 >>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:1-90,A:258-287) Probab=70.53 E-value=5.2 Score=18.95 Aligned_cols=56 Identities=13% Similarity=-0.035 Sum_probs=34.4 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH Q ss_conf 9389858968869999999987982999421000007852001644758799984846799988620 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF 67 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~ 67 (232) ||||+|.|.+...+ .|++ .+++...|.- ......+.++|.|+..+..-........ T Consensus 1 MKILi~~~~~~~~~---~L~~-~~eV~~~~~~-------eel~~~l~d~diIi~~~~~~~~~~l~~a 56 (120) T 2o4c_A 1 MRILADENIPVVDA---FFAD-QGSIRRLPGR-------AIDRAALAEVDVLLVRSVTEVSRAALAG 56 (120) T ss_dssp CEEEEETTCTTHHH---HHGG-GSEEEEECGG-------GCSTTTTTTCSEEEECTTSCBCHHHHTT T ss_pred CEEEECCCCHHHHH---HHCC-CCEEEECCCC-------CCCHHHCCCCEEEEECCCCCCCHHHHCC T ss_conf 97998789867999---8503-8959986898-------6898881896599987888888999758 No 39 >>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} (A:) Probab=70.05 E-value=6.6 Score=18.34 Aligned_cols=58 Identities=14% Similarity=-0.084 Sum_probs=35.7 Q ss_pred CEEEEE----CCHHHHHHHHHHHHH---CCCCEEEECCEEEECCCC--------CC--CCCCCCCCCEEEEECHH Q ss_conf 938985----896886999999998---798299942100000785--------20--01644758799984846 Q gi|255764510|r 1 MYIVIT----RPIKKALRTQEKIQK---MGYIPVMMPLSYFIHDRE--------SV--FLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilit----Rp~~~a~~~~~~L~~---~G~~~i~~Pli~i~~~~~--------~~--~~~~~~~~d~iiftS~~ 58 (232) ||||+. |+...+.++++.+.+ .|+++..+-+-++-.... +. ....+.++|.|||.||. T Consensus 3 mkil~i~gSpr~~s~s~~l~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI~~~P~ 77 (192) T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWIFSPV 77 (192) T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCC T ss_conf 879999899999887999999999983799879997378899999520114789999999987428935996644 No 40 >>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} (A:) Probab=69.81 E-value=3.6 Score=19.93 Aligned_cols=57 Identities=12% Similarity=0.043 Sum_probs=34.7 Q ss_pred CEEEEE--CCHHHHH----HHHHHHHHCCCCEEEECCEEEECC----------------CCCC--CCCCCCCCCEEEEEC Q ss_conf 938985--8968869----999999987982999421000007----------------8520--016447587999848 Q gi|255764510|r 1 MYIVIT--RPIKKAL----RTQEKIQKMGYIPVMMPLSYFIHD----------------RESV--FLAMQQSYGAIAITS 56 (232) Q Consensus 1 M~ilit--Rp~~~a~----~~~~~L~~~G~~~i~~Pli~i~~~----------------~~~~--~~~~~~~~d~iiftS 56 (232) ||||+. -|...+. .+++.|++.|.++-.+.+-+..+. .++. ....+.++|.|||-| T Consensus 7 mkIlii~gS~~g~t~~l~~~~~~~l~~~g~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~aD~iii~s 86 (211) T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211) T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEEEEC T ss_conf 78999997998189999999999987569779999866767642022466776078764551566566676388659823 Q ss_pred H Q ss_conf 4 Q gi|255764510|r 57 S 57 (232) Q Consensus 57 ~ 57 (232) | T Consensus 87 P 87 (211) T 1ydg_A 87 P 87 (211) T ss_dssp E T ss_pred C T ss_conf 5 No 41 >>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} (A:) Probab=69.70 E-value=6.9 Score=18.22 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=51.9 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE-CHHHHHHHHH------HHCCCCC Q ss_conf 9389858968-869999999987982999421000007852001644758799984-8467999886------2001363 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT-SSESLSTLPA------NFCRHTP 72 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift-S~~av~~~~~------~~~~~~~ 72 (232) |+|+|..-.. ....+.+.|++.|+++...|.-. .....+...+|.++++ ++..+.-... ...++.| T Consensus 25 ~~i~iid~~~~~~~~i~~~l~~~g~~~~i~~~~~------~~~~~~~~~~dGiii~Gg~~~~~d~~~~~~i~~~~~~~~P 98 (218) T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFPLET------PAFAIKEQGFRAIIISGGPNSVYAEDAPWFDPAIFTIGKP 98 (218) T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEECTTC------CHHHHHHHTCSEEEEEC---------CCCCCGGGGTSSCC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC------CHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHCCCC T ss_conf 9899998984598999999774595699988999------9999985199889995899885434464312666625973 Q ss_pred EECCCHHHHHHHHHHCC Q ss_conf 00041589999764101 Q gi|255764510|r 73 IFAIGEASACLARQKGF 89 (232) Q Consensus 73 ~~~vg~~t~~~~~~~~~ 89 (232) ++.+--+-.-.....|. T Consensus 99 iLGIC~G~Qlla~alGg 115 (218) T 2vpi_A 99 VLGICYGMQMMNKVFGG 115 (218) T ss_dssp EEEETHHHHHHHHHTTC T ss_pred EEEEHHHHHHHHHHCCC T ss_conf 78751578999876151 No 42 >>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} (H:) Probab=67.85 E-value=7.6 Score=17.99 Aligned_cols=49 Identities=4% Similarity=0.046 Sum_probs=36.3 Q ss_pred CEEEEECCH-HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH Q ss_conf 938985896-886999999998798299942100000785200164475879998484679 Q gi|255764510|r 1 MYIVITRPI-KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL 60 (232) Q Consensus 1 M~ilitRp~-~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av 60 (232) |||+|.+-. ..-..+...|++.|+++...| ...++.++|.+|++-.... T Consensus 3 ~ri~vi~~~~~~~~~~~~~l~~~g~~v~~~~-----------~~~~l~~~dgvilpGg~~~ 52 (200) T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQ-----------DPKAHEEADLLVLPGQGHF 52 (200) T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEES-----------STTSCSSCSEEEECCCSCH T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEC-----------CHHHHHHCCEEEECCCCCH T ss_conf 7799997898589999999998799699987-----------9899840898999699847 No 43 >>3klb_A Putative flavoprotein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343} (A:) Probab=65.40 E-value=5.6 Score=18.78 Aligned_cols=25 Identities=8% Similarity=-0.099 Sum_probs=12.1 Q ss_pred CCCEEEEECH-------HHHHHHHHHCCHHHC Q ss_conf 7838998078-------999999971354405 Q gi|255764510|r 166 NADAILFYAR-------SSVLYFFSLPLPAKI 190 (232) Q Consensus 166 ~~d~i~f~S~-------~~v~~~~~~~~~~~~ 190 (232) ..|.|+|.|| ..+..|++.+...+. T Consensus 78 ~aD~iI~~sP~y~~~~~~~lk~~ld~~~~~gK 109 (162) T 3klb_A 78 KYEVLFVGFPVWWYIAPTIINTFLESYDFAGK 109 (162) T ss_dssp GCSEEEEEEECBTTBCCHHHHHHHHTSCCTTC T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHHCCCCCC T ss_conf 58877984234357743999999984798999 No 44 >>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, alternative splicing, calcium, calmodulin-binding, FAD, FMN, heme, iron, metal-binding; HET: FMN; 2.50A {Homo sapiens} (A:41-219) Probab=61.46 E-value=10 Score=17.25 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=28.4 Q ss_pred CEEEEECC--HHHHHHHHHHHH---HCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 93898589--688699999999---8798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRP--IKKALRTQEKIQ---KMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp--~~~a~~~~~~L~---~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) |||+|.-- .....+.|..+. +.|+++...++-+.. ..++.+||.++|-|+ T Consensus 1 Mki~I~Y~S~tGnTe~~A~~ia~~l~~g~~v~l~~~~~~~-------~~~l~~~d~ii~~~~ 55 (179) T 3hr4_A 1 VRVTILFATETGKSEALAWDLGALFSCAFNPKVVCMDKYR-------LSCLEEERLLLVVTS 55 (179) T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHTTTSEEEEEEGGGCC-------GGGGGTCSEEEEEEE T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEHHHCC-------HHHHHCCCEEEEEEE T ss_conf 6289999899966999999999998569996795144358-------445311460599962 No 45 >>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:) Probab=60.96 E-value=10 Score=17.20 Aligned_cols=99 Identities=10% Similarity=0.172 Sum_probs=58.6 Q ss_pred CCCEEEEECCCC----CCCCHHHHHHHCCCEEEEEEEEEECCC-CCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCHH Q ss_conf 775389721567----562014689846982567688750468-999889998623783899-80789999999713544 Q gi|255764510|r 115 PQKPLIYLGGKP----RNFHFEDYLIEHKIPLRVIDCYYSQDI-AYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLPA 188 (232) Q Consensus 115 ~~~~vl~~~g~~----~~~~l~~~L~~~g~~v~~~~vY~~~~~-~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~~ 188 (232) ..+++.++.... ........|++.|++|.-+......-. ......+.++-..+|.++ |..+..+...++.+... T Consensus 21 ~p~~iAVvGas~~~~~~g~~v~~~l~~~G~~V~~V~p~~~~i~g~~~~~sl~elp~~~Dlv~i~~p~~~~~~i~~e~~~~ 100 (144) T 2d59_A 21 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKK 100 (144) T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHC T ss_conf 68949999115999982599999999789989998973330079745664201467650799985889999999999972 Q ss_pred HCCEEEE---ECCHHHHHHHHHCCCCEE Q ss_conf 0580399---718899999997699669 Q gi|255764510|r 189 KISAAFL---CLSNNIASAIPASYKNVV 213 (232) Q Consensus 189 ~~~~~~~---~ig~~tA~~~~~~g~~~~ 213 (232) +....++ .++....+.+++.|...+ T Consensus 101 g~k~v~~~~~g~~e~~~~~a~~~gi~vv 128 (144) T 2d59_A 101 GAKVVWFQYNTYNREASKKADEAGLIIV 128 (144) T ss_dssp TCSEEEECTTCCCHHHHHHHHHTTCEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCEEE T ss_conf 9999999426449999999999699889 No 46 >>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} (A:) Probab=60.09 E-value=9.5 Score=17.40 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=8.4 Q ss_pred HHHHHHHCCCEEEEEEEEE Q ss_conf 1468984698256768875 Q gi|255764510|r 131 FEDYLIEHKIPLRVIDCYY 149 (232) Q Consensus 131 l~~~L~~~g~~v~~~~vY~ 149 (232) +.+.|...|..++.+.+|+ T Consensus 57 ~~~~l~~~g~~v~~idL~~ 75 (247) T 2q62_A 57 ARRLLEFFGAEVKVFDPSG 75 (247) T ss_dssp HHHHHHHTTCEEEECCCTT T ss_pred HHHHCCCCCCEEEEEEHHH T ss_conf 9986411671699976665 No 47 >>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} (A:250-398) Probab=59.69 E-value=7 Score=18.20 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=15.4 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 99999998798299942100000785200164475879998484 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) .+++.|++.|+++..+.+ ...+.......+.++|.|||.|| T Consensus 22 ~~~~~l~~~g~~v~~~~~---~~~~~~~~~~~~~~~d~iii~sP 62 (149) T 1ycg_A 22 ALMDGLVAGGCEVKLFKL---SVSDRNDVIKEILDARAVLVGSP 62 (149) T ss_dssp HHHHHHHHTTCEEEEEEG---GGSCHHHHHHHHHHCSEEEEECC T ss_pred HHHHHHHHCCCEEEEEEC---CCCCCHHHHHHHHCCCEEEEECC T ss_conf 999987645955999987---55681554430320676899458 No 48 >>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} (A:163-244) Probab=59.56 E-value=8.1 Score=17.82 Aligned_cols=19 Identities=16% Similarity=-0.045 Sum_probs=9.3 Q ss_pred CCHHHHHHHHHCCCCEEEE Q ss_conf 1889999999769966998 Q gi|255764510|r 197 LSNNIASAIPASYKNVVTV 215 (232) Q Consensus 197 ig~~tA~~~~~~g~~~~~v 215 (232) -.++|++.+++.|++++.+ T Consensus 56 ~~~~~~~~L~~~G~~Vi~i 74 (82) T 1h70_A 56 GYPRTREKIARLGYRVIEV 74 (82) T ss_dssp SCHHHHHHHHTTTCEEEEE T ss_pred CCHHHHHHHHHCCCEEEEE T ss_conf 8899999999889989995 No 49 >>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} (A:) Probab=58.65 E-value=6.5 Score=18.37 Aligned_cols=167 Identities=13% Similarity=0.073 Sum_probs=84.5 Q ss_pred CEEEEECCHHHHH-HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHH-HHHHHHHCCCCCEE--CC Q ss_conf 9389858968869-99999998798299942100000785200164475879998484679-99886200136300--04 Q gi|255764510|r 1 MYIVITRPIKKAL-RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESL-STLPANFCRHTPIF--AI 76 (232) Q Consensus 1 M~ilitRp~~~a~-~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av-~~~~~~~~~~~~~~--~v 76 (232) .+||++.+.+... .+...++..++.....+ ..+.....+.++|.++..+.--+ +.+.....+-.-+. .. T Consensus 1 ~~Vl~~~~~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~l~~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~~a 73 (334) T 2pi1_A 1 XNVLFTSVPQEDVPFYQEALKDLSLKIYTTD-------VSKVPENELKKAELISVFVYDKLTEELLSKXPRLKLIHTRSV 73 (334) T ss_dssp CEEEECSCCTTHHHHHHHHTTTSEEEECSSC-------GGGSCHHHHHHCSEEEECTTSCBCHHHHTTCTTCCEEEESSS T ss_pred CEEEEECCCCCCCHHHHHHHHHCCEEEEECC-------CCCCCHHHHCCCCEEEEECCCCCCHHHHHCCCCCCEEEECCC T ss_conf 9799967871337679998864783799567-------453888785478899995789889999944998619998897 Q ss_pred CHH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHH--------------------------HHCCCCCCEEEEECCCCCC Q ss_conf 158--999976410122354445456789998642--------------------------2012777538972156756 Q gi|255764510|r 77 GEA--SACLARQKGFTQIFHGKDNSINLAKIIVEQ--------------------------KVLFTPQKPLIYLGGKPRN 128 (232) Q Consensus 77 g~~--t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--------------------------~~~~~~~~~vl~~~g~~~~ 128 (232) |-. -..++.+.|......+...+...++...-. ......++++.++.-.... T Consensus 74 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~vgiiG~G~iG 153 (334) T 2pi1_A 74 GFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIG 153 (334) T ss_dssp CCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBCCGGGSEEEEECCSHHH T ss_pred CCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC T ss_conf 57842303653388798438986527678887654441012212111133222222223332320144049999255654 Q ss_pred CCHHHHHHHCCCEEEEEEEEEECCCC------CCHHHHHHHHCCCCEEEEECHHH Q ss_conf 20146898469825676887504689------99889998623783899807899 Q gi|255764510|r 129 FHFEDYLIEHKIPLRVIDCYYSQDIA------YPETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 129 ~~l~~~L~~~g~~v~~~~vY~~~~~~------~~~~~~~~~~~~~d~i~f~S~~~ 177 (232) ..+.+.|+..|..|.. |.+.+.. .....+.+++.+.|+|++.-|.+ T Consensus 154 ~~~a~~l~~fg~~v~~---~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~lplt 205 (334) T 2pi1_A 154 SRVAXYGLAFGXKVLC---YDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYT 205 (334) T ss_dssp HHHHHHHHHTTCEEEE---ECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCC T ss_pred CCCCCCCCCCCCCCCC---CCCCCCHHHHHCCCCCCCHHHHHHHCCEEEECCCCC T ss_conf 4332112222223322---366540235542763579999984489789817898 No 50 >>3ff4_A Uncharacterized protein; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 2.10A {Cytophaga hutchinsonii atcc 33406} (A:) Probab=58.28 E-value=5.8 Score=18.69 Aligned_cols=98 Identities=11% Similarity=0.155 Sum_probs=45.1 Q ss_pred CCEEEEECCCC----CCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCHHHC Q ss_conf 75389721567----562014689846982567688750468999889998623783899-8078999999971354405 Q gi|255764510|r 116 QKPLIYLGGKP----RNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLPAKI 190 (232) Q Consensus 116 ~~~vl~~~g~~----~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~~~~ 190 (232) .+++.++.... ....+.+.|.+.|+.|.-+.-....-.......-......+|.++ |..++.+...++.+...+. T Consensus 4 ~k~iAViGaS~~~~~~g~~v~~~l~~~g~~V~pVnp~~~~v~G~~~y~~l~~~~~~D~v~i~~~~~~~~~~~~e~~~~gi 83 (122) T 3ff4_A 4 XKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYNYILSLKP 83 (122) T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHHHHHHHCC T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHHHHHCCC T ss_conf 66399998769999809999999997899899985657600005899734346898799999688998999999985399 Q ss_pred CEEEE---ECCHHHHHHHHHCCCCEE Q ss_conf 80399---718899999997699669 Q gi|255764510|r 191 SAAFL---CLSNNIASAIPASYKNVV 213 (232) Q Consensus 191 ~~~~~---~ig~~tA~~~~~~g~~~~ 213 (232) +..++ .+++...+.+++.|.+.+ T Consensus 84 k~v~~~~~~~~e~~~~~a~~~gi~ii 109 (122) T 3ff4_A 84 KRVIFNPGTENEELEEILSENGIEPV 109 (122) T ss_dssp SEEEECTTCCCHHHHHHHHHTTCEEE T ss_pred CEEEEECCCCCHHHHHHHHHCCCEEE T ss_conf 99999359879999999999699799 No 51 >>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} (A:) Probab=57.93 E-value=12 Score=16.88 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=33.5 Q ss_pred EEEEECCH---HHHHHHHHHHHHCCCCEEEECCEEEECCCCCC-C--CCCCCCCCEEEE--ECHHHHHHHHHHHC Q ss_conf 38985896---88699999999879829994210000078520-0--164475879998--48467999886200 Q gi|255764510|r 2 YIVITRPI---KKALRTQEKIQKMGYIPVMMPLSYFIHDRESV-F--LAMQQSYGAIAI--TSSESLSTLPANFC 68 (232) Q Consensus 2 ~ilitRp~---~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-~--~~~~~~~d~iif--tS~~av~~~~~~~~ 68 (232) .+|||=-. .=+..++..|.+.|+.++..-. .+..... . ...-.+...+.. ++...++.+..... T Consensus 11 ~vlITGas~~~GIG~aiA~~la~~G~~Vv~~~r---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265) T 1qsg_A 11 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQ---NDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG 82 (265) T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEES---STTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC---CHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH T ss_conf 799989998501899999999986999999958---878999999998626971799821322478999999998 No 52 >>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} (A:255-414) Probab=57.87 E-value=8.9 Score=17.55 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=16.7 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 99999998798299942100000785200164475879998484 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) .+++.|++.|+++....+-+ .+.......+.++|.|||.|| T Consensus 22 ~i~~~l~~~g~~v~~~~~~~---~~~~~~~~~~~~~d~ii~~tP 62 (160) T 2q9u_A 22 ALLDGARSTGCETVLLEMTS---SDITKVALHTYDSGAVAFASP 62 (160) T ss_dssp HHHHHHHHTTCEEEEEEGGG---CCHHHHHHHHHTCSEEEEECC T ss_pred HHHHHHHHCCCEEEEEECCC---CCHHHHHHHHHHCCEEEEECC T ss_conf 99998875697599996667---775677999864896999578 No 53 >>3i09_A Periplasmic branched-chain amino acid-binding protein; YP_104442.1, periplasmic binding protein BMA293, structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} (A:123-255,A:318-375) Probab=56.82 E-value=12 Score=16.77 Aligned_cols=79 Identities=8% Similarity=-0.072 Sum_probs=51.7 Q ss_pred CCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCH Q ss_conf 777538972156-----7562014689846982567688750468999889998623783899-8078999999971354 Q gi|255764510|r 114 TPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLP 187 (232) Q Consensus 114 ~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~ 187 (232) .+.+++.++..+ .....+.+.+++.|..|.....|.....+.........-.+.|+|+ ..++.....+++.+.. T Consensus 16 ~g~k~Vaii~~D~ayG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~tDfss~l~~i~~s~advVil~~~g~d~~~~ikqa~e 95 (191) T 3i09_A 16 QGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKE 95 (191) T ss_dssp TTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHH T ss_pred HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHH T ss_conf 13778999516871878999999998874496488889606756541379988762599889990577068999999998 Q ss_pred HHCCE Q ss_conf 40580 Q gi|255764510|r 188 AKISA 192 (232) Q Consensus 188 ~~~~~ 192 (232) .+.+. T Consensus 96 ~Gl~~ 100 (191) T 3i09_A 96 FGITK 100 (191) T ss_dssp TTGGG T ss_pred CCCCC T ss_conf 09887 No 54 >>1o1y_A Conserved hypothetical protein TM1158; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.70A {Thermotoga maritima} (A:) Probab=55.80 E-value=13 Score=16.67 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=52.3 Q ss_pred CEEEEECCHH--HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH----------HHH----HH Q ss_conf 9389858968--8699999999879829994210000078520016447587999848467----------999----88 Q gi|255764510|r 1 MYIVITRPIK--KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES----------LST----LP 64 (232) Q Consensus 1 M~ilitRp~~--~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a----------v~~----~~ 64 (232) |+|+|..... ........|++.|+++...|....... ...+.+||.||++-..+ +.. +. T Consensus 13 ~~i~vid~~~~~~~~~~~~~l~~~g~~~~v~~~~~~~~~-----~~~~~~~Dgiii~Gg~~~~~~~~~~~~~~~~~~~i~ 87 (239) T 1o1y_A 13 VRVLAIRHVEIEDLGXXEDIFREKNWSFDYLDTPKGEKL-----ERPLEEYSLVVLLGGYXGAYEEEKYPFLKYEFQLIE 87 (239) T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCC-----SSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC-----CCCHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 079999799988976999999978897999989898778-----767444798998899998777767832299999999 Q ss_pred HHHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf 62001363000415899997641012 Q gi|255764510|r 65 ANFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 65 ~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) .......|++.+.-+........|.. T Consensus 88 ~~~~~~~PilGIC~G~QlLa~~~g~~ 113 (239) T 1o1y_A 88 EILKKEIPFLGIXLGSQXLAKVLGAS 113 (239) T ss_dssp HHHHHTCCEEEETHHHHHHHHHTTCC T ss_pred HHHHCCCCEEEECHHHHHHHHHHCCE T ss_conf 99976999999828999999870982 No 55 >>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} (A:1-125) Probab=54.79 E-value=13 Score=16.57 Aligned_cols=90 Identities=7% Similarity=-0.115 Sum_probs=47.5 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC Q ss_conf 12777538972156756201468984698256768875046899988999862378389980789999999713544058 Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS 191 (232) Q Consensus 112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~ 191 (232) ...+.++|+++.+....--+...+++.|+.+.. +|.. + ..+. ..-.|...+.|..-.+...+.....+.+ T Consensus 7 ~~~~~kkilIiG~G~~~~~l~~~a~~~g~~~~~--~~~~-~--~~~~-----~~~ad~~~~~~~~d~~~i~~~a~~~~vd 76 (125) T 1kjq_A 7 LRPAATRVMLLGSGELGKEVAIECQRLGVEVIA--VDRY-A--DAPA-----MHVAHRSHVINMLDGDALRRVVELEKPH 76 (125) T ss_dssp TSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEE--EESS-T--TCGG-----GGGSSEEEECCTTCHHHHHHHHHHHCCS T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE--EECC-C--CCCH-----HHHCCEEEECCCCCHHHHHHHHHHHCCC T ss_conf 999998999989789999999999987998999--9799-9--9826-----7625506871788999999999983999 Q ss_pred EEEEE---CCHHHHHHHHHCCCC Q ss_conf 03997---188999999976996 Q gi|255764510|r 192 AAFLC---LSNNIASAIPASYKN 211 (232) Q Consensus 192 ~~~~~---ig~~tA~~~~~~g~~ 211 (232) ....- ++..++..+.+.|.. T Consensus 77 ~v~~~~~~~~~~~~~~l~~~gi~ 99 (125) T 1kjq_A 77 YIVPEIEAIATDMLIQLEEEGLN 99 (125) T ss_dssp EEEECSSCSCHHHHHHHHHTTCE T ss_pred EEECCCCCHHHHHHHHHHHCCCC T ss_conf 99827762748999999975983 No 56 >>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} (A:) Probab=54.62 E-value=13 Score=16.55 Aligned_cols=84 Identities=17% Similarity=0.095 Sum_probs=52.6 Q ss_pred CEEEEECCHHH-HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC-HHHH------HHHHHHHCCCCC Q ss_conf 93898589688-699999999879829994210000078520016447587999848-4679------998862001363 Q gi|255764510|r 1 MYIVITRPIKK-ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS-SESL------STLPANFCRHTP 72 (232) Q Consensus 1 M~ilitRp~~~-a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS-~~av------~~~~~~~~~~~~ 72 (232) |||+|.--... ...+.+.|++.|+++...|.-+ .........+|.++++- +..+ ........+..| T Consensus 1 M~i~iid~g~~~~~~l~~~l~~~g~~~~v~~~~~------~~~~~~~~~~~~i~~~gg~~~~~d~~~~~~i~~~~~~~~P 74 (189) T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT------PLEEIKAMNPKGIIFSGGPSLENTGNCEKVLEHYDEFNVP 74 (189) T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC------CHHHHHHTCCSEEEECCCSCTTCCTTHHHHHHTGGGTCSC T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCC------CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC T ss_conf 9899997988089999999986798599985999------8899865325431123576321245431000000035743 Q ss_pred EECCCHHHHHHHHHHCCC Q ss_conf 000415899997641012 Q gi|255764510|r 73 IFAIGEASACLARQKGFT 90 (232) Q Consensus 73 ~~~vg~~t~~~~~~~~~~ 90 (232) ++.+--+-.-.....|.. T Consensus 75 iLGIC~G~Qll~~alGg~ 92 (189) T 1wl8_A 75 ILGICLGHQLIAKFFGGK 92 (189) T ss_dssp EEEETHHHHHHHHHHTCE T ss_pred EEEEHHHHHHHHEECCCC T ss_conf 775343421233117872 No 57 >>2a9v_A GMP synthase; NP_394403.1, , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.24A {Thermoplasma acidophilum} (A:) Probab=53.89 E-value=12 Score=16.85 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=46.9 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC-HHHH-------HHHHHH-HCCC Q ss_conf 9389858968-8699999999879829994210000078520016447587999848-4679-------998862-0013 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS-SESL-------STLPAN-FCRH 70 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS-~~av-------~~~~~~-~~~~ 70 (232) |||+|.--.. ....+.+.|++.|+++..+|-. ....++..+|.||++- +..+ ..+... .... T Consensus 14 m~vliid~g~~~~~~i~~~l~~~g~~~~v~~~~--------~~~~~~~~~dgiii~GG~~~~~~~~~~~~~~~~~~~~~~ 85 (212) T 2a9v_A 14 LKIYVVDNGGQWTHREWRVLRELGVDTKIVPND--------IDSSELDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHN 85 (212) T ss_dssp CBEEEEEESCCTTCHHHHHHHHTTCBCCEEETT--------SCGGGGTTCSEEEEEEECSCGGGTGGGHHHHHHHHHHCC T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC--------CCHHHHHCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC T ss_conf 579999997678999999999789848999697--------999998468907983576554203321245677765158 Q ss_pred CCEECCCHHHHHHHHHHC Q ss_conf 630004158999976410 Q gi|255764510|r 71 TPIFAIGEASACLARQKG 88 (232) Q Consensus 71 ~~~~~vg~~t~~~~~~~~ 88 (232) .|++.+--+-.-.....| T Consensus 86 ~PiLGIC~G~Qll~~a~G 103 (212) T 2a9v_A 86 YPILGICVGAQFIALHFG 103 (212) T ss_dssp SCEEEETHHHHHHHHHTT T ss_pred CEEEEEECCCEEEEEECC T ss_conf 328998607556543124 No 58 >>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus pcc 7942} (A:) Probab=53.64 E-value=14 Score=16.46 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=30.3 Q ss_pred CEEEEECCHH------HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 9389858968------869999999987982999421000007852001644758799984846 Q gi|255764510|r 1 MYIVITRPIK------KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilitRp~~------~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) |||+|.--.. -+..+++.|++.|...+..+- .....++.+||.+||-|+- T Consensus 1 mki~IiY~S~tGnT~~iA~~ia~~l~~~g~~~~~~~~--------~~~~~~l~~~d~iiig~pt 56 (169) T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIA--------NADASDLNAYDYLIIGCPT 56 (169) T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTSTTTEEEEEGG--------GCCGGGGGGCSEEEEECCE T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECC--------CCCHHHHHCCCCEEEEEEC T ss_conf 9099999999735999999999998437986898536--------4899898508763999615 No 59 >>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A* (A:) Probab=53.56 E-value=8.2 Score=17.76 Aligned_cols=58 Identities=14% Similarity=0.019 Sum_probs=28.2 Q ss_pred CEEEEE----CCHHHHHHHHHHHHH-CCCCEEEECCEEEECCCCC--------C--CCCCCCCCCEEEEECHH Q ss_conf 938985----896886999999998-7982999421000007852--------0--01644758799984846 Q gi|255764510|r 1 MYIVIT----RPIKKALRTQEKIQK-MGYIPVMMPLSYFIHDRES--------V--FLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilit----Rp~~~a~~~~~~L~~-~G~~~i~~Pli~i~~~~~~--------~--~~~~~~~~d~iiftS~~ 58 (232) ||||+. |+.....++++.+.+ ...+.+.+--.++.+.... . ....+.++|.|||-||. T Consensus 1 MKilii~gS~r~~~~t~~l~~~~~~g~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI~~~P~ 73 (174) T 3gfs_A 1 MNMLVINGTPRKHGRTRIAASYIAALYHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSPE 73 (174) T ss_dssp --CEEEECCCCTTCHHHHHHHHHHHHTTCEEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEEC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECHH T ss_conf 9899997789987779999999982188059970026878656201347748789897634137824996314 No 60 >>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:1-97,A:284-307) Probab=53.50 E-value=14 Score=16.44 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=33.7 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 9389858968869999999987982999421000007852001644758799984846 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) |+|++++|.+ ....+.|++.|......+-..- +.....+.++|.++..+.. T Consensus 4 ~kVl~~~~~~--~~~~~~L~~~~~~~~~~~~~~~-----eel~~~l~d~d~ii~~~~~ 54 (121) T 1wwk_A 4 MKVLVAAPLH--EKAIQVLKDAGLEVIYEEYPDE-----DRLVELVKDVEAIIVRSKP 54 (121) T ss_dssp CEEEECSCCC--HHHHHHHHHTTCEEEECSSCCH-----HHHHHHSTTCSEEEESSCS T ss_pred CEEEEECCCC--HHHHHHHHHCCCEEEECCCCCH-----HHHHHHHCCCEEEEEECCC T ss_conf 7899978999--9999999867998997899999-----9999984898099995998 No 61 >>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* (A:255-404) Probab=53.32 E-value=9.4 Score=17.41 Aligned_cols=12 Identities=33% Similarity=0.374 Sum_probs=5.5 Q ss_pred CCCCCEEEEECH Q ss_conf 475879998484 Q gi|255764510|r 46 QQSYGAIAITSS 57 (232) Q Consensus 46 ~~~~d~iiftS~ 57 (232) +.++|.|||-|| T Consensus 51 ~~~~d~ii~~sp 62 (150) T 2ohh_A 51 ILESGAIALGAP 62 (150) T ss_dssp HHTCSEEEEECC T ss_pred HHHCCCEEEECC T ss_conf 975893899347 No 62 >>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:1-109,A:240-289) Probab=53.31 E-value=8.6 Score=17.65 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=22.9 Q ss_pred HHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEE Q ss_conf 999999879829994210000078520016447587999848467999886200136300 Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIF 74 (232) Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~ 74 (232) +...+++.|+.++..+.-+.+-.........-...|++|+.+...-........++.|+. T Consensus 33 I~~~a~~~GY~lli~~~~~~e~e~~~l~~l~~~~VDGIIl~~~~~~~~~~~ll~~~iPvV 92 (159) T 3k9c_A 33 IYAAATRRGYDVXLSAVAPSRAEKVAVQALXRERCEAAILLGTRFDTDELGALADRVPAL 92 (159) T ss_dssp HHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCHHHHHHHHTTSCEE T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEE T ss_conf 999999869989999489888999999999970975121102301588998754447758 No 63 >>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:102-230) Probab=52.90 E-value=14 Score=16.38 Aligned_cols=92 Identities=12% Similarity=-0.021 Sum_probs=60.1 Q ss_pred CCCCEEEEECCCCCC-----CCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHHC Q ss_conf 777538972156756-----201468984698256768875046899988999862---378389980789999999713 Q gi|255764510|r 114 TPQKPLIYLGGKPRN-----FHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSLP 185 (232) Q Consensus 114 ~~~~~vl~~~g~~~~-----~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~~ 185 (232) .+..++.++.++... .-+.+.+.+.|..+....++..............++ ..+++|+..|-..+..++..+ T Consensus 15 ~G~~~i~~i~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~l 94 (129) T 3gyb_A 15 LGHTHIAHLRVGSGAGLRRFESFEATXRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAA 94 (129) T ss_dssp TTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHH T ss_pred CCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHH T ss_conf 02232200012320235667777789999743012112333343777655667776513686355312533113578998 Q ss_pred CHHHC----CEEEEECCHHHHHHH Q ss_conf 54405----803997188999999 Q gi|255764510|r 186 LPAKI----SAAFLCLSNNIASAI 205 (232) Q Consensus 186 ~~~~~----~~~~~~ig~~tA~~~ 205 (232) ...+. ++.++|++..-...+ T Consensus 95 ~~~g~~ip~di~ivgfd~~~~~~~ 118 (129) T 3gyb_A 95 RELGLRVPEDLSIIGYDNTPLAQT 118 (129) T ss_dssp HHHTCCTTTTCEEEEESCCHHHHS T ss_pred HHHHHHHCCCEEEEEECCCHHHHH T ss_conf 876330001102454258278873 No 64 >>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} (A:110-239) Probab=52.86 E-value=14 Score=16.38 Aligned_cols=85 Identities=8% Similarity=0.024 Sum_probs=57.1 Q ss_pred CCCCEEEEECCCCCCC------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHHH Q ss_conf 7775389721567562------01468984698256768875046899988999862---37838998078999999971 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFSL 184 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~~ 184 (232) .+.+++.++.+..... -+.+.+.++|..+.....+..............+. .++++|+.++...+..+.+. T Consensus 15 ~G~r~i~~i~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~ 94 (130) T 3k9c_A 15 LGHRNIAHIDGADAPGGADRRAGFLAAXDRHGLSASATVVTGGTTETEGAEGXHTLLEXPTPPTAVVAFNDRCATGVLDL 94 (130) T ss_dssp TTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHH T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHCCCHHHCCCCEEE T ss_conf 23531121012246531257788988887632554212234566413678899998750357513321410211442000 Q ss_pred CCHHHC----CEEEEECC Q ss_conf 354405----80399718 Q gi|255764510|r 185 PLPAKI----SAAFLCLS 198 (232) Q Consensus 185 ~~~~~~----~~~~~~ig 198 (232) +...+. ++.+++++ T Consensus 95 l~~~g~~iP~di~ii~fd 112 (130) T 3k9c_A 95 LVRSGRDVPADISVVGYD 112 (130) T ss_dssp HHHTTCCTTTTCEEEEEE T ss_pred CCCCCCEEEECCCCCCCC T ss_conf 014684455222245656 No 65 >>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} (A:) Probab=51.81 E-value=15 Score=16.28 Aligned_cols=114 Identities=14% Similarity=0.049 Sum_probs=55.2 Q ss_pred CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEE------------EEE--CCCCCCHHHHHHH-HCCCCEEEEECHH-HHH Q ss_conf 75389721567562014689846982567688------------750--4689998899986-2378389980789-999 Q gi|255764510|r 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDC------------YYS--QDIAYPETTMKNL-LQNADAILFYARS-SVL 179 (232) Q Consensus 116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~v------------Y~~--~~~~~~~~~~~~~-~~~~d~i~f~S~~-~v~ 179 (232) .++++++........+...|.+.|..|.-+.- |.. .......+.+... +.+.|.|+++.+. ... T Consensus 4 ~~~i~IiG~G~~G~~la~~l~~~g~~V~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~i~~ad~vi~~~~~~~~~ 83 (140) T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCEEEEEECCHHHH T ss_conf 99999989899999999999977996799850156665545314855998986607778744920107799960867778 Q ss_pred HHH-HHCCHHHCC-EEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 999-713544058-03997188999999976996699879999889999986 Q gi|255764510|r 180 YFF-SLPLPAKIS-AAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 180 ~~~-~~~~~~~~~-~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) ... ++....... +..-+..+.-.+.+++.|...++.+....-..+.+.+. T Consensus 84 ~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~vi~~~~~~~~~~~~~i~ 135 (140) T 1lss_A 84 LMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPELIAANYIEKLIE 135 (140) T ss_dssp HHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHHHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH T ss_conf 9999999983998189997598789999767999999889999999999942 No 66 >>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein structure initiative; HET: TLA; 1.50A {Streptococcus pneumoniae TIGR4} (A:) Probab=51.41 E-value=15 Score=16.24 Aligned_cols=45 Identities=11% Similarity=-0.097 Sum_probs=22.5 Q ss_pred HHHHHHHHCC-CCEEEECCE--EEECCC-----------------CCC--CCCCCCCCCEEEEECHH Q ss_conf 9999999879-829994210--000078-----------------520--01644758799984846 Q gi|255764510|r 14 RTQEKIQKMG-YIPVMMPLS--YFIHDR-----------------ESV--FLAMQQSYGAIAITSSE 58 (232) Q Consensus 14 ~~~~~L~~~G-~~~i~~Pli--~i~~~~-----------------~~~--~~~~~~~~d~iiftS~~ 58 (232) .+.+.+++.| .++-.+-+- .+.+.. ++. ....+.++|.|||.||. T Consensus 23 ~~~~~l~~~g~~ev~~i~l~~~~~~~c~gc~~c~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~sP~ 89 (242) T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPV 89 (242) T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEE T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCE T ss_conf 9999986269937999972236877442133431044423366158999999999968978996642 No 67 >>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima} (D:1-193) Probab=51.23 E-value=15 Score=16.22 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=48.0 Q ss_pred CEEEEEC-CHHHH-HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH-HH------HH-------- Q ss_conf 9389858-96886-99999999879829994210000078520016447587999848467-99------98-------- Q gi|255764510|r 1 MYIVITR-PIKKA-LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES-LS------TL-------- 63 (232) Q Consensus 1 M~ilitR-p~~~a-~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a-v~------~~-------- 63 (232) |||+|.+ +.... ..+...|++.|+++...|. ...+.++|.+|++-..+ +. .. T Consensus 3 ~~I~ii~~~~~~~~~~~~~~l~~~g~~v~~~~~-----------~~~l~~~d~lil~Gg~~~~~~~~~~~~~~~~~~~~~ 71 (193) T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGL-----------DDKLDDYELIILPGGFSYGDYLRPGAVAAREKIAFE 71 (193) T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECT-----------TCCCSSCSEEEECEECGGGGCSSTTHHHHTSTTHHH T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEC-----------HHHHHHCCEEEECCCCCHHHHHHHHHHHCHHHHHHH T ss_conf 659999228818299999999986992899847-----------333402878997897640888998877430146689 Q ss_pred -HHHHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf -862001363000415899997641012 Q gi|255764510|r 64 -PANFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 64 -~~~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) .....+..|++.+-.+-.-.....+.. T Consensus 72 ~~~~~~~~~pilGIC~G~Q~L~~~~g~~ 99 (193) T 3d54_D 72 IAKAAERGKLIMGIXNGFQILIEMGLLK 99 (193) T ss_dssp HHHHHHHTCEEEECHHHHHHHHHHTSSC T ss_pred HHHHHHCCCCEEEEEEEEEEEECCCCCC T ss_conf 9998746985798867667743023335 No 68 >>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:1-99,A:286-313) Probab=51.13 E-value=13 Score=16.65 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=28.5 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 938985896886999999998798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) |+|+++++.+ ....+.|++.|+++...+-...+ .....+.++|.++..+. T Consensus 6 ~kVli~~~~~--~~~~~~l~~~~~~v~~~~~~~~~-----el~~~l~~~dvii~~~~ 55 (127) T 2ekl_A 6 VKALITDPID--EILIKTLREKGIQVDYMPEISKE-----ELLNIIGNYDIIVVRSR 55 (127) T ss_dssp CEEEECSCCC--HHHHHHHHHTTCEEEECTTCCHH-----HHHHHGGGCSEEEECSS T ss_pred EEEEEECCCC--HHHHHHHHHCCCEEEECCCCCHH-----HHHHHHCCCCEEEECCC T ss_conf 0899978999--99999998789889989998999-----99998289829998889 No 69 >>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} (A:) Probab=50.26 E-value=15 Score=16.13 Aligned_cols=115 Identities=10% Similarity=-0.006 Sum_probs=63.6 Q ss_pred CCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE------------CC-CCCCHHHHHHH-HCCCCEEEEECHHHHH- Q ss_conf 775389721567562014689846982567688750------------46-89998899986-2378389980789999- Q gi|255764510|r 115 PQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS------------QD-IAYPETTMKNL-LQNADAILFYARSSVL- 179 (232) Q Consensus 115 ~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~------------~~-~~~~~~~~~~~-~~~~d~i~f~S~~~v~- 179 (232) ..++++++.+......+.+.|.+.|..|.-+.-... .. .....+.+..+ +++.|+|+++.+.... T Consensus 5 ~~~~vlIiG~G~iG~~ia~~L~~~g~~vvvvd~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~ad~vi~~~~~~~~~ 84 (144) T 2hmt_A 5 KNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQA 84 (144) T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCCCEEEEEECCCHHH T ss_conf 58828998878999999999997899089983898999999860662035114678888630221289999996884767 Q ss_pred -HHHHHCCHHHCCEE-EE-ECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf -99971354405803-99-7188999999976996699879999889999986 Q gi|255764510|r 180 -YFFSLPLPAKISAA-FL-CLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 180 -~~~~~~~~~~~~~~-~~-~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) .............. ++ .-.+.-.+.+++.|...++.+..-.-..+.+.+. T Consensus 85 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~~~~~~a~~~~~~i~ 137 (144) T 2hmt_A 85 STLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLS 137 (144) T ss_dssp HHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC T ss_conf 99999999856999679998248899999978989999949999999999976 No 70 >>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid binding, structural genomics; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* (A:181-319,A:446-496) Probab=49.81 E-value=16 Score=16.09 Aligned_cols=75 Identities=11% Similarity=0.028 Sum_probs=42.6 Q ss_pred CEEEEECC-----CCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHH---HHH-CCCCEEE-EECHHHHHHHHHHCC Q ss_conf 53897215-----6756201468984698256768875046899988999---862-3783899-807899999997135 Q gi|255764510|r 117 KPLIYLGG-----KPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMK---NLL-QNADAIL-FYARSSVLYFFSLPL 186 (232) Q Consensus 117 ~~vl~~~g-----~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~---~~~-~~~d~i~-f~S~~~v~~~~~~~~ 186 (232) ..|.++.. ..+...|.+.+++.|+.+.....+.........+... .+. .+.++|+ |.+...+..+++.+. T Consensus 18 ~~V~iI~~d~~YG~~~~~~f~~~~~~~gi~I~~~~~~~~~~~~~~~d~~~~l~~i~~~~a~vVv~~~~~~~~~~il~~a~ 97 (190) T 3ks9_A 18 TYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMR 97 (190) T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHH T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHH T ss_conf 78999995367888999999999997598799999826899878999999998874026427999846799999999999 Q ss_pred HHHCC Q ss_conf 44058 Q gi|255764510|r 187 PAKIS 191 (232) Q Consensus 187 ~~~~~ 191 (232) ..+.. T Consensus 98 ~~glt 102 (190) T 3ks9_A 98 RLGVV 102 (190) T ss_dssp HHTCC T ss_pred HHCCC T ss_conf 83455 No 71 >>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} (A:) Probab=49.68 E-value=16 Score=16.08 Aligned_cols=98 Identities=14% Similarity=0.118 Sum_probs=48.3 Q ss_pred CCEEEEECCC----CCCCCHHHHHHHCCCEEEEEEEE---EECCCCCCHHHHHHHHCCCCEEEEE-CHHHHHHHHHHCCH Q ss_conf 7538972156----75620146898469825676887---5046899988999862378389980-78999999971354 Q gi|255764510|r 116 QKPLIYLGGK----PRNFHFEDYLIEHKIPLRVIDCY---YSQDIAYPETTMKNLLQNADAILFY-ARSSVLYFFSLPLP 187 (232) Q Consensus 116 ~~~vl~~~g~----~~~~~l~~~L~~~g~~v~~~~vY---~~~~~~~~~~~~~~~~~~~d~i~f~-S~~~v~~~~~~~~~ 187 (232) .+++.++... .....+.+.|.+.|+.+.-+.+- .++.-......+.++-+++|.++++ .+..+...++.+.+ T Consensus 13 p~siaViGaS~~~~~~g~~v~~~L~~~g~~~~~~~p~~~~~~i~g~~~~~sl~~~~~~~D~vvi~vp~~~~~~~l~e~~~ 92 (140) T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLPEVLA 92 (140) T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHHHHHH T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCEECCEEEECCHHHCCCCCCEEEEEECHHHHHHHHHHHHH T ss_conf 99599992269999719999999972898389978767642556827525567758997289998088998999999996 Q ss_pred HHCCEEEE---ECCHHHHHHHHHCCCCEE Q ss_conf 40580399---718899999997699669 Q gi|255764510|r 188 AKISAAFL---CLSNNIASAIPASYKNVV 213 (232) Q Consensus 188 ~~~~~~~~---~ig~~tA~~~~~~g~~~~ 213 (232) .+....++ .......+.+++.|...+ T Consensus 93 ~g~~~~~~~~g~~~e~~~~~~~~~gi~vv 121 (140) T 1iuk_A 93 LRPGLVWLQSGIRHPEFEKALKEAGIPVV 121 (140) T ss_dssp HCCSCEEECTTCCCHHHHHHHHHTTCCEE T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCEEE T ss_conf 49898998989779999999999699799 No 72 >>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301} (A:) Probab=49.50 E-value=12 Score=16.88 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=26.4 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 69999999987982999421000007852001644758799984846 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) +..+++.|++.|+++....+-+.. .......+.+||.|||-|+. T Consensus 18 A~~ia~~l~~~g~~v~~~~~~~~~---~~~~~~~l~~~d~vi~gspt 61 (161) T 3hly_A 18 SQAIGRGLVKTGVAVEXVDLRAVD---PQELIEAVSSARGIVLGTPP 61 (161) T ss_dssp HHHHHHHHHHTTCCEEEEETTTCC---HHHHHHHHHHCSEEEEECCB T ss_pred HHHHHHHHHHCCCEEEEEECCCCC---HHHHHHHCCCCCEEEECCCC T ss_conf 999999988679969997635499---77863100314289988877 No 73 >>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:1-107,A:298-330) Probab=49.01 E-value=12 Score=16.82 Aligned_cols=53 Identities=9% Similarity=-0.066 Sum_probs=23.2 Q ss_pred CEEEEECCHHHHHHHHHHHHHC-CCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 9389858968869999999987-98299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKM-GYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~-G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) |||+++++.++. ....|++. ++++...+... ..+.+.....+.++|.|+..+. T Consensus 9 ~KIlv~~~~~~~--~~~~l~~~~~~~v~~~~~~~--~~~~eel~~~l~~~D~Ii~~~~ 62 (140) T 2gcg_A 9 MKVFVTRRIPAE--GRVALARAADCEVEQWDSDE--PIPAKELERGVAGAHGLLCLLS 62 (140) T ss_dssp EEEEESSCCCHH--HHHHHHHCTTEEEEECCSSS--CCCHHHHHHHHTTCSEEEECTT T ss_pred CEEEEECCCCHH--HHHHHHHCCCCEEEECCCCC--CCCHHHHHHHHCCCCEEEECCC T ss_conf 489996988999--99999862994899678889--9999999998289979999089 No 74 >>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} (A:158-285) Probab=47.17 E-value=17 Score=15.84 Aligned_cols=88 Identities=8% Similarity=-0.121 Sum_probs=56.4 Q ss_pred CCCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHH Q ss_conf 127775389721567562-------0146898469825676887504689998899986237838998078999999971 Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSL 184 (232) Q Consensus 112 ~~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~ 184 (232) ...+..++.++.+..... -+.+.+.+.|..+.....+...................++++..+...+..++.. T Consensus 13 ~~~G~~~ia~i~~~~~~~~~~~R~~g~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~~~ 92 (128) T 3jvd_A 13 LGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRA 92 (128) T ss_dssp CCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHH T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 34553168750465321124554466777898608642220025422457788898875043115554346666553578 Q ss_pred CCHHHC----CEEEEECCH Q ss_conf 354405----803997188 Q gi|255764510|r 185 PLPAKI----SAAFLCLSN 199 (232) Q Consensus 185 ~~~~~~----~~~~~~ig~ 199 (232) +...+. ++.+++++. T Consensus 93 l~~~g~~vP~di~iv~~d~ 111 (128) T 3jvd_A 93 FTRLNVRVPHDVVIGGYDD 111 (128) T ss_dssp HHHTTCCTTTTCEEEEESC T ss_pred HHHHHHCCCCCEEEEEECC T ss_conf 8887505789779999898 No 75 >>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} (A:) Probab=46.99 E-value=17 Score=15.82 Aligned_cols=66 Identities=6% Similarity=0.012 Sum_probs=42.8 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEE--------CHHHHHHHHHHHCCCCCEECCCHHHH Q ss_conf 9999999987982999421000007852001644758799984--------84679998862001363000415899 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAIT--------SSESLSTLPANFCRHTPIFAIGEASA 81 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iift--------S~~av~~~~~~~~~~~~~~~vg~~t~ 81 (232) ..+...|++.|+++-.....+..- ......+.+||.|||- |.+..+.+.....++..+.++..++. T Consensus 35 ~~l~~~l~~~g~~v~~~~~~~~~~---~~~~~~L~~yDvvI~~~~~~~~~l~~~~~~~l~~~V~~GGglv~~~~~~~ 108 (252) T 1t0b_A 35 TVIASYLAEAGFDAATAVLDEPEH---GLTDEVLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLEGMGLIVLHSGHF 108 (252) T ss_dssp HHHHHHHHHTTCEEEEEESSSGGG---GCCHHHHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHTTCEEEEEGGGGG T ss_pred HHHHHHHHCCCCEEEEEECCCCCC---CCCHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 999998601783589996567645---58955721578899938888675798999999999985998899965657 No 76 >>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} (A:122-261,A:351-391) Probab=46.55 E-value=18 Score=15.78 Aligned_cols=104 Identities=9% Similarity=-0.161 Sum_probs=58.5 Q ss_pred HHHHHHHHCCCCCCEEEEECCC------CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHH--HHHHHCCCCEEEEE-C Q ss_conf 9986422012777538972156------7562014689846982567688750468999889--99862378389980-7 Q gi|255764510|r 104 KIIVEQKVLFTPQKPLIYLGGK------PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETT--MKNLLQNADAILFY-A 174 (232) Q Consensus 104 ~ll~~~~~~~~~~~~vl~~~g~------~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~--~~~~~~~~d~i~f~-S 174 (232) .-+.+......+.+++.++..+ .....+.+.+.+.|..|.....|..-..+..... ++..-.++|+|++. + T Consensus 8 ~ala~yl~~~~g~kkvavi~~dd~~yG~~~~~~~~~~l~~~G~~Vv~~~~~~~~~~d~~~~v~~lk~~~a~pdaVil~~~ 87 (181) T 3eaf_A 8 CSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREXLAADPDYVWCGNT 87 (181) T ss_dssp HHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSC T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECC T ss_conf 88999999850367389998147830478999999999753675004662143112222024444443256426999525 Q ss_pred HHHHHHHHHHCCHHHCCEEEEEC----CHHHHHHHHH Q ss_conf 89999999713544058039971----8899999997 Q gi|255764510|r 175 RSSVLYFFSLPLPAKISAAFLCL----SNNIASAIPA 207 (232) Q Consensus 175 ~~~v~~~~~~~~~~~~~~~~~~i----g~~tA~~~~~ 207 (232) +.....|++.+...+.+..+++. ++.+.+.+.+ T Consensus 88 ~~~~~~~ikq~~~~g~~~~ii~~~~~~~~~~l~~~g~ 124 (181) T 3eaf_A 88 ISSCSLLGRAXAKVGLDAFLLTNVWGFDERSPQLIGE 124 (181) T ss_dssp HHHHHHHHHHHHHHTCCCEEEECGGGCSTTHHHHHCG T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH T ss_conf 5267899999997399852787414688999997678 No 77 >>3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} (A:115-246) Probab=46.39 E-value=18 Score=15.77 Aligned_cols=91 Identities=16% Similarity=0.075 Sum_probs=60.4 Q ss_pred CCCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHHH---CCCCEEEEECHHHHHHH Q ss_conf 27775389721567562-------01468984698256768875046899988-999862---37838998078999999 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNLL---QNADAILFYARSSVLYF 181 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~~---~~~d~i~f~S~~~v~~~ 181 (232) ..+..++.++.+..... -+.+.+.++|..+....++.......... ....++ ..++++++.|...+..+ T Consensus 14 ~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~d~~a~~~ 93 (132) T 3k4h_A 14 SLGHKQIAFIGGGSDLLVTRDRLAGXSDALKLADIVLPKEYILHFDFSRESGQQAVEELXGLQQPPTAIXATDDLIGLGV 93 (132) T ss_dssp HTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHH T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHH T ss_conf 53154069994377750666554554110343024665200223332224799999999946999978974585211002 Q ss_pred HHHCCHHHC----CEEEEECCHHHHH Q ss_conf 971354405----8039971889999 Q gi|255764510|r 182 FSLPLPAKI----SAAFLCLSNNIAS 203 (232) Q Consensus 182 ~~~~~~~~~----~~~~~~ig~~tA~ 203 (232) ...+...+. ++.+++++..--. T Consensus 94 ~~~l~~~g~~iP~di~iigfd~~~~~ 119 (132) T 3k4h_A 94 LSALSKKGFVVPKDVSIVSFNNALLS 119 (132) T ss_dssp HHHHHHTTCCTTTTCEEEEESCCHHH T ss_pred HHHHHHCCCCCCCCEEEEECCCHHHH T ss_conf 79999808877751368630686789 No 78 >>3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} (A:113-245) Probab=46.03 E-value=18 Score=15.73 Aligned_cols=93 Identities=8% Similarity=-0.049 Sum_probs=56.7 Q ss_pred CCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 277753897215675620-------1468984698256768875046899988999862---378389980789999999 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) ..+.++++++.|...... +.+.+++.+..+.....+....... .......+ ..+++|+.++...+.... T Consensus 16 ~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ai~~~~d~~a~gv~ 94 (133) T 3brs_A 16 VRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAIYYCDSNYDKA-YDGTVELLTKYPDISVMVGLNQYSATGAA 94 (133) T ss_dssp TSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEEEECTTCHHHH-HHHHHHHHHHCTTEEEEEESSHHHHHHHH T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCHHHH-HHHHHHHHHCCCCCCEEECCCCHHHHHHH T ss_conf 34432158842553107788887649999986333342024321120899-99999765218752134215527899999 Q ss_pred HHCCHHHC--CEEEEECC--HHHHHHHH Q ss_conf 71354405--80399718--89999999 Q gi|255764510|r 183 SLPLPAKI--SAAFLCLS--NNIASAIP 206 (232) Q Consensus 183 ~~~~~~~~--~~~~~~ig--~~tA~~~~ 206 (232) +.+...+. ++.++++. +.+.+.++ T Consensus 95 ~al~~~g~~~di~iig~D~~~~~~~~i~ 122 (133) T 3brs_A 95 RAIKDMSLEAKVKLVCIDSSMEQIQYLE 122 (133) T ss_dssp HHHHHTTCTTTSEEEEEESCSCC----- T ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHH T ss_conf 9999749866403423689499999987 No 79 >>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston bacterial structural genomics initiative, BSGI; 1.80A {Escherichia coli O157} PDB: 2b3d_A* (A:) Probab=45.88 E-value=12 Score=16.80 Aligned_cols=14 Identities=0% Similarity=-0.273 Sum_probs=8.7 Q ss_pred CCCCCCEEEEECHH Q ss_conf 44758799984846 Q gi|255764510|r 45 MQQSYGAIAITSSE 58 (232) Q Consensus 45 ~~~~~d~iiftS~~ 58 (232) .+..+|.|||-||. T Consensus 67 ~l~~AD~iV~~sP~ 80 (204) T 2amj_A 67 NFLWADVVIWQXPG 80 (204) T ss_dssp HHHHCSEEEEEEEC T ss_pred HHHCCCEEEEECCC T ss_conf 99709989998585 No 80 >>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} (A:) Probab=45.25 E-value=18 Score=15.66 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=51.1 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH-HHHHH-----------HHHHHC Q ss_conf 938985896886999999998798299942100000785200164475879998484-67999-----------886200 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS-ESLST-----------LPANFC 68 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~-~av~~-----------~~~~~~ 68 (232) .+|+|..-...-..+.+.|++.|+++...|- ..++.++|.||++-. ..+.- +..... T Consensus 24 ~~I~vid~~~~~~~~~~~l~~~G~~~~~~~~-----------~~~l~~~Dgvil~GG~~~~~~~~~~~~~~~~~i~~~~~ 92 (219) T 1q7r_A 24 XKIGVLGLQGAVREHVRAIEACGAEAVIVKK-----------SEQLEGLDGLVLPGGESTTXRRLIDRYGLXEPLKQFAA 92 (219) T ss_dssp CEEEEESCGGGCHHHHHHHHHTTCEEEEECS-----------GGGGTTCSEEEECCCCHHHHHHHHHHTTCHHHHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEECC-----------HHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHH T ss_conf 7799996388499999999987996999899-----------89982699999899987999988545770999998754 Q ss_pred CCCCEECCCHHHHHHHHHHCCC Q ss_conf 1363000415899997641012 Q gi|255764510|r 69 RHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 69 ~~~~~~~vg~~t~~~~~~~~~~ 90 (232) .+.|++.+-.+-.-.....+.. T Consensus 93 ~~~PvlGiC~G~Q~L~~~lgg~ 114 (219) T 1q7r_A 93 AGKPXFGTCAGLILLAKRIVGY 114 (219) T ss_dssp TTCCEEEETTHHHHHEEEEESS T ss_pred CCCCEEEEEHHHHHHHHCCCCC T ss_conf 6997899813057652203233 No 81 >>2o1m_A Probable amino-acid ABC transporter extracellular-binding protein YTMK; NESG X-RAY O34852 YTMK_bacsu, structural genomics, PSI-2; 2.00A {Bacillus subtilis} (A:100-206) Probab=44.80 E-value=19 Score=15.62 Aligned_cols=70 Identities=11% Similarity=-0.009 Sum_probs=54.0 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH-HCCCCEEEEECHHHHHHHHHHCC Q ss_conf 1277753897215675620146898469825676887504689998899986-23783899807899999997135 Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL-LQNADAILFYARSSVLYFFSLPL 186 (232) Q Consensus 112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~-~~~~d~i~f~S~~~v~~~~~~~~ 186 (232) ...++++|....|......+.+.+.+.|....++..|... .+.+..+ .+++|+++...+.......+... T Consensus 22 ~DLkGk~i~v~~gs~~~~~l~~~~~~~g~~~~~i~~~~~~-----~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~ 92 (107) T 2o1m_A 22 EDLKGKRVITSATSNGALVLKKWNEDNGRPFEIAYEGQGA-----NETANQLKSGRADATISTPFAVDFQNKTSTI 92 (107) T ss_dssp GGCTTCEEEECSSSHHHHHHHHHHHHTTCCSEEEECCSST-----THHHHHHHHTSCSBEEECHHHHHHHHHHCSS T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCH-----HHHHHHHHHHEECCCCCCCHHHHHHHHCCCC T ss_conf 4566404776577769999999887517874220146999-----9999997645212224650677888753675 No 82 >>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} (A:81-263) Probab=44.22 E-value=19 Score=15.56 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=45.0 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHH Q ss_conf 27775389721567562014689846982567688750468999889998623783899807899 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSS 177 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~ 177 (232) ...++++.++........+.+.|+..|..|..+.-+...........+.+++.+.|+|++.-|.+ T Consensus 41 ~l~g~~vgIvG~G~iG~~ia~~l~~fg~~v~~~~~~~~~~~~~~~~~~~ell~~aDiv~~~~plt 105 (183) T 1qp8_A 41 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN 105 (183) T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEECCCCC T ss_conf 15798899987685389999999867988998436433342101387999962589999726798 No 83 >>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} (A:) Probab=44.02 E-value=19 Score=15.54 Aligned_cols=30 Identities=20% Similarity=0.053 Sum_probs=15.8 Q ss_pred EECCHHHHHHHHHCCCCEEEECCCCCHHHH Q ss_conf 971889999999769966998799998899 Q gi|255764510|r 195 LCLSNNIASAIPASYKNVVTVACFPKETSL 224 (232) Q Consensus 195 ~~ig~~tA~~~~~~g~~~~~va~~p~~~~l 224 (232) ..+.+..|..+...|.+...+++.+....+ T Consensus 185 ~~l~~~la~el~~~gIrvn~i~PG~i~t~~ 214 (270) T 3ftp_A 185 AGMTRALAREIGSRGITVNCVAPGFIDTDM 214 (270) T ss_dssp HHHHHHHHHHHGGGTEEEEEEEECSBCSHH T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCHH T ss_conf 999999999964566479898538786833 No 84 >>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:) Probab=43.98 E-value=19 Score=15.54 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=46.6 Q ss_pred CE--EEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHH-------------H Q ss_conf 93--89858968869999999987982999421000007852001644758799984846799988-------------6 Q gi|255764510|r 1 MY--IVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLP-------------A 65 (232) Q Consensus 1 M~--ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~-------------~ 65 (232) || |+|..=-..-..+.+.|++.|+++...| ...++.++|.||++-..+...-. . T Consensus 1 M~~~I~vi~~~~~~~~~~~~l~~~g~~v~~~~-----------~~~~l~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~ 69 (191) T 2ywd_A 1 MRGVVGVLALQGDFREHKEALKRLGIEAKEVR-----------KKEHLEGLKALIVPGGESTTIGKLAREYGIEDEVRKR 69 (191) T ss_dssp --CCEEEECSSSCHHHHHHHHHTTTCCCEEEC-----------SGGGGTTCSEEEECSSCHHHHHHHHHHTTHHHHHHHH T ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCEEEEC-----------CHHHHHCCCEEEECCCCHHHHHHHHHHHCCHHHHHHH T ss_conf 98669999778679999999998799699989-----------9899615585797697659999873430010120000 Q ss_pred HHCCCCCEECCCHHHHHHHHHHCCC Q ss_conf 2001363000415899997641012 Q gi|255764510|r 66 NFCRHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 66 ~~~~~~~~~~vg~~t~~~~~~~~~~ 90 (232) ......|++.+-.+-.-.....+.. T Consensus 70 ~~~~~~PilGiC~G~Q~L~~~~gg~ 94 (191) T 2ywd_A 70 VEEGSLALFGTCAGAIWLAKEIVGY 94 (191) T ss_dssp HHTTCCEEEEETHHHHHHEEEETTC T ss_pred HCCCCCEEEEECHHHHHHHHCCCCC T ss_conf 0045415899734344454204677 No 85 >>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} (A:) Probab=43.00 E-value=20 Score=15.45 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=26.9 Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 86999999998798299942100000785200164475879998484 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) -+..+++.|++.|.++...++.+..+ ..+.++|.++|-++ T Consensus 26 iA~~ia~~l~~~g~~v~~~~v~~~~~-------~~l~~~d~iv~g~~ 65 (167) T 1ykg_A 26 VAEALRDDLLAAKLNVKLVNAGDYKF-------KQIASEKLLIVVTS 65 (167) T ss_dssp HHHHHHHHHHHHTCCCEEEEGGGCCG-------GGGGGCSEEEEEEE T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCH-------HCCCCCCCEEEEEC T ss_conf 99999999987699637742453110-------10235553389953 No 86 >>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: FMN; 2.00A {Enterococcus faecalis} (A:) Probab=42.70 E-value=17 Score=15.81 Aligned_cols=15 Identities=0% Similarity=-0.144 Sum_probs=5.7 Q ss_pred HHHHHHHC--CCCEEEE Q ss_conf 99999987--9829994 Q gi|255764510|r 15 TQEKIQKM--GYIPVMM 29 (232) Q Consensus 15 ~~~~L~~~--G~~~i~~ 29 (232) +++.+++. |.++-.+ T Consensus 26 ~~~~l~~~~~g~ev~~i 42 (208) T 2hpv_A 26 FLASYRETNPSDEIEIL 42 (208) T ss_dssp HHHHHHHHCTTSEEEEE T ss_pred HHHHHHHHCCCCEEEEE T ss_conf 99999975999879999 No 87 >>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:111-243) Probab=42.11 E-value=21 Score=15.36 Aligned_cols=87 Identities=13% Similarity=0.036 Sum_probs=55.9 Q ss_pred CCCCCEEEEECCCCCC-------CCHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHH Q ss_conf 2777538972156756-------20146898469825676887504689998-8999862---37838998078999999 Q gi|255764510|r 113 FTPQKPLIYLGGKPRN-------FHFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYF 181 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~-------~~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~ 181 (232) ..+.+++.++++.... .-+.+.|.++|..+....++......... .....++ ..+|+|+..+...+..+ T Consensus 15 ~~G~~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~ 94 (133) T 2rgy_A 15 EHGHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCANDTXAVSA 94 (133) T ss_dssp HTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHHHH T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf 53001100024675544311112136789987288643121223456788899998653013568753434683676655 Q ss_pred HHHCCHHHC----CEEEEECCH Q ss_conf 971354405----803997188 Q gi|255764510|r 182 FSLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 182 ~~~~~~~~~----~~~~~~ig~ 199 (232) +..+...+. ++.+++++. T Consensus 95 ~~~l~~~g~~vP~di~ivgfd~ 116 (133) T 2rgy_A 95 LARFQQLGISVPGDVSVIGYDD 116 (133) T ss_dssp HHHHHHTTCCTTTTCEEEEEEC T ss_pred HHHHHHCCCCCCCCCCCCCCCC T ss_conf 6777650455785210221468 No 88 >>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:1-111,A:300-332) Probab=41.32 E-value=21 Score=15.29 Aligned_cols=21 Identities=14% Similarity=-0.050 Sum_probs=9.6 Q ss_pred HHHHHCCCCEEEECCCCCHHH Q ss_conf 999976996699879999889 Q gi|255764510|r 203 SAIPASYKNVVTVACFPKETS 223 (232) Q Consensus 203 ~~~~~~g~~~~~va~~p~~~~ 223 (232) +++.+.|+....++.--++|+ T Consensus 97 ~aa~erGI~V~N~pg~~~~~~ 117 (144) T 3k5p_A 97 KAARKRGIPVFNAPFGSTEEA 117 (144) T ss_dssp HHHHHTTCCEECCSSTCCHHH T ss_pred HHHCCCCHHEECCCCCCCHHH T ss_conf 220023210011356278999 No 89 >>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} (A:251-402) Probab=41.26 E-value=21 Score=15.29 Aligned_cols=92 Identities=10% Similarity=0.111 Sum_probs=43.4 Q ss_pred CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-------HHHHHHHHCCHHHCC-EEE--E-EC- Q ss_conf 01468984698256768875046899988999862378389980789-------999999713544058-039--9-71- Q gi|255764510|r 130 HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-------SVLYFFSLPLPAKIS-AAF--L-CL- 197 (232) Q Consensus 130 ~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-------~v~~~~~~~~~~~~~-~~~--~-~i- 197 (232) .+.+.|...|..|+.+.++ +...+.....+...|.|+|.||. .+..|++.+.....+ ..+ + +- T Consensus 22 ~i~~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~iii~tP~y~~~~~~~~k~fi~~l~~~~~~~k~~~v~~~~~ 96 (152) T 1e5d_A 22 VLAESFRDEGCTVKLMWCK-----ACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFG 96 (152) T ss_dssp HHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEES T ss_pred HHHHHHHCCCCEEEEEECC-----CCCCCHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCC T ss_conf 9987751369459999862-----33430225567537738994477576404999999999651355899899999038 Q ss_pred -----CHHHHHHHHHCCCCE----EEECCCCCHHHHHH Q ss_conf -----889999999769966----99879999889999 Q gi|255764510|r 198 -----SNNIASAIPASYKNV----VTVACFPKETSLLK 226 (232) Q Consensus 198 -----g~~tA~~~~~~g~~~----~~va~~p~~~~ll~ 226 (232) .....+.+...|+.. ..+...|+.+.+-+ T Consensus 97 ~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (152) T 1e5d_A 97 WSGESTKVLAEWLTGMGFDMPATPVKVKNVPTHADYEQ 134 (152) T ss_dssp SSCHHHHHHHHHHHHTTCBCCSCCEEEESSCCHHHHHH T ss_pred CCCHHHHHHHHHHHHCCCEEECCCEEEEECCCHHHHHH T ss_conf 87489999999999884999748689971689899999 No 90 >>2ax3_A Hypothetical protein TM0922; TM0922, hypothetical protein, structural genomics, joint center for structural genomics, JCSG; 2.27A {Thermotoga maritima MSB8} (A:1-213) Probab=41.06 E-value=21 Score=15.27 Aligned_cols=66 Identities=12% Similarity=0.016 Sum_probs=37.3 Q ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEEC Q ss_conf 641012235444545678999864220127775389721567562----0146898469825676887504 Q gi|255764510|r 85 RQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQ 151 (232) Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~ 151 (232) .+.|..........+....+.+.+... ..+..+|+++||.+.+. .+...|..+|++|..+.+.... T Consensus 22 ~~~g~~~~~LME~Ag~~~a~~i~~~~~-~~~~~~v~vlcG~GnNGGDGlv~AR~L~~~G~~V~v~~~~~~~ 91 (213) T 2ax3_A 22 KEYGVDSRILXERAGISVVLAXEEELG-NLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKK 91 (213) T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHHHHS-CCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSC T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 874939999999999999999999667-4579969999889978999999999998689957999968999 No 91 >>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} (A:127-259,A:340-385) Probab=40.05 E-value=19 Score=15.54 Aligned_cols=78 Identities=6% Similarity=0.016 Sum_probs=47.5 Q ss_pred CCCCEEEEECCC-----CCCCCHHHHHHHCCCEEEEEEEEEECCCC-CCHHHHHHHH-CCCCEEE-EECHHHHHHHHHHC Q ss_conf 777538972156-----75620146898469825676887504689-9988999862-3783899-80789999999713 Q gi|255764510|r 114 TPQKPLIYLGGK-----PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-YPETTMKNLL-QNADAIL-FYARSSVLYFFSLP 185 (232) Q Consensus 114 ~~~~~vl~~~g~-----~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-~~~~~~~~~~-~~~d~i~-f~S~~~v~~~~~~~ 185 (232) .+.++|.++..+ .....+.+.++++|..+.....|...+.. +....+..+. .++|+|+ +.++..+..|++.+ T Consensus 12 ~g~kkVaiI~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~D~~~~i~~i~~~~pd~Vi~~~~~~~~~~~l~qa 91 (179) T 1pea_A 12 HYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAI 91 (179) T ss_dssp TTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHH T ss_pred HCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHH T ss_conf 17847998226776235565546666664168357899616764420168999998751899899996347799999999 Q ss_pred CHHHCC Q ss_conf 544058 Q gi|255764510|r 186 LPAKIS 191 (232) Q Consensus 186 ~~~~~~ 191 (232) ...+.. T Consensus 92 ~~~Gl~ 97 (179) T 1pea_A 92 ARRYGD 97 (179) T ss_dssp HHHHCS T ss_pred HHHCCC T ss_conf 984799 No 92 >>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} (A:) Probab=39.05 E-value=22 Score=15.20 Aligned_cols=49 Identities=10% Similarity=-0.044 Sum_probs=28.7 Q ss_pred CE-EEEEC--CHHH----HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 93-89858--9688----69999999987982999421000007852001644758799984846 Q gi|255764510|r 1 MY-IVITR--PIKK----ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~-ilitR--p~~~----a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) |+ |+|.- .... +..+++.|++.|+++..++..+ ..++.+||.+||-|+- T Consensus 1 M~ki~I~Y~S~~GnTe~iA~~ia~~l~~~~~~v~~~~~~~---------~~~l~~~d~ii~g~pt 56 (169) T 1obo_A 1 AKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAE---------VTDLNDYQYLIIGCPT 56 (169) T ss_dssp CCSEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEETTTCC---------GGGGGGCSEEEEEEEE T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCC---------HHHHCCCCEEEEEEEE T ss_conf 9789999999982699999999998556873799856578---------7686068779999820 No 93 >>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:1-125,A:270-293) Probab=39.04 E-value=8.1 Score=17.80 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=10.6 Q ss_pred HHHHHHHHHHHCCCCEEEE Q ss_conf 8699999999879829994 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMM 29 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~ 29 (232) ...++++.|.+.|+++... T Consensus 16 R~s~vArsL~~~Ga~V~~~ 34 (149) T 3d4o_A 16 RQLEIIRKLSTFDAKISLV 34 (149) T ss_dssp HHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHHHHCCCEEEEE T ss_conf 3999999999789989999 No 94 >>2o8n_A APOA-I binding protein; rossmann fold, protein binding; 2.00A {Mus musculus} PDB: 2dg2_A (A:) Probab=38.71 E-value=23 Score=15.04 Aligned_cols=64 Identities=9% Similarity=-0.074 Sum_probs=38.1 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC---CCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEEC Q ss_conf 0122354445456789998642201---27775389721567562----0146898469825676887504 Q gi|255764510|r 88 GFTQIFHGKDNSINLAKIIVEQKVL---FTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQ 151 (232) Q Consensus 88 ~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~ 151 (232) |.......+..+...++.+.+.... .....+|+++||.+.+. .....|..+|+.|..+.++... T Consensus 48 Gi~~~~LME~Ag~~~a~~i~~~~~~~~~~~~~~~V~il~G~GnNGGDGl~~Ar~L~~~G~~V~v~~~~~~~ 118 (265) T 2o8n_A 48 QFSVDQLXELAGLSCATAIAKAYPPTSXSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPN 118 (265) T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCGGGSSSSSCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCSCCS T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 98999999999999999999965622235679739999878986388899999999869806999957877 No 95 >>1ja1_A NADPH-cytochrome P450 reductase; oxidoreductase; HET: FAD FMN NAP EPE; 1.80A {Rattus norvegicus} (A:1-182) Probab=37.81 E-value=24 Score=14.96 Aligned_cols=43 Identities=7% Similarity=-0.030 Sum_probs=18.2 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEEC Q ss_conf 699999999879829994210000078520016447587999848 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITS 56 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS 56 (232) |..+++.|++.|+++...++-+..+.. ....++..++.+||-+ T Consensus 39 A~~la~~l~~~G~~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~ 81 (182) T 1ja1_A 39 ANRLSKDAHRYGMRGMSADPEEYDLAD--LSSLPEIDKSLVVFCM 81 (182) T ss_dssp HHHHHHHGGGGTCCEEEECGGGSCGGG--GGGGGGSTTCEEEEEE T ss_pred HHHHHHHHHHCCCCEEECCHHHCCHHH--HHHCCCCCCCEEEEEE T ss_conf 999999999679974973658789878--7523245785699998 No 96 >>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} (A:161-292) Probab=37.12 E-value=25 Score=14.89 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=54.1 Q ss_pred CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 77753897215675620-------146898469825676887504689998-8999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+..++.++.+...... +.+.+.++|..+....++......... +....++ ..+|+++..|...+..++ T Consensus 15 ~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~g~~ 94 (132) T 1qpz_A 15 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGAL 94 (132) T ss_dssp HTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHH T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCC T ss_conf 59985999828855531789998899999985999982218954342667999999998179998089977709987402 Q ss_pred HHCCHHHC----CEEEEECCH Q ss_conf 71354405----803997188 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~ 199 (232) +.+...+. ++.+++++. T Consensus 95 ~~l~~~g~~ip~di~i~~fd~ 115 (132) T 1qpz_A 95 CAADEMGLRVPQDVSLIGYDN 115 (132) T ss_dssp HHHHHTTCCTTTTCEEEEEEC T ss_pred HHHHHCCCCCCCCEEEEEECC T ss_conf 269873997898759998788 No 97 >>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} (A:110-241) Probab=37.12 E-value=25 Score=14.89 Aligned_cols=86 Identities=9% Similarity=0.029 Sum_probs=54.1 Q ss_pred CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 77753897215675620-------146898469825676887504689998-8999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+..++.++.+...... +.+.+.++|..+....++......... +....++ ..+|+++..|...+..++ T Consensus 15 ~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~g~~ 94 (132) T 1dbq_A 15 RGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGAL 94 (132) T ss_dssp TTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHH T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHH T ss_conf 59966999637631247899997667899980899772002357677777899999998459998458855789999999 Q ss_pred HHCCHHHC----CEEEEECCH Q ss_conf 71354405----803997188 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~ 199 (232) +.+...+. ++.+++++. T Consensus 95 ~~l~~~g~~ip~di~i~~fd~ 115 (132) T 1dbq_A 95 CAADEMGLRVPQDVSLIGYDN 115 (132) T ss_dssp HHHHHTTCCTTTTCEEEEEEC T ss_pred HHHHHCCCCCCCCEEEEEECC T ss_conf 999986999997569996068 No 98 >>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} (A:164-293) Probab=36.70 E-value=25 Score=14.85 Aligned_cols=85 Identities=11% Similarity=0.149 Sum_probs=56.4 Q ss_pred CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHH--HHHCCCCEEEEECHHHHHHHHHH Q ss_conf 77753897215675620-------1468984698256768875046899988999--86237838998078999999971 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMK--NLLQNADAILFYARSSVLYFFSL 184 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~--~~~~~~d~i~f~S~~~v~~~~~~ 184 (232) .+..++.++.+...... +.+.+.+.|..+....++............. ......+++++.+...+..+++. T Consensus 15 ~G~r~I~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~~~~~~ 94 (130) T 2o20_A 15 SGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVVSHDTVAVGLLSA 94 (130) T ss_dssp TTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHH T ss_conf 18876443347877821999999999999984999885569955624777799999986403452001355655554389 Q ss_pred CCHHHC----CEEEEECC Q ss_conf 354405----80399718 Q gi|255764510|r 185 PLPAKI----SAAFLCLS 198 (232) Q Consensus 185 ~~~~~~----~~~~~~ig 198 (232) +...+. ++.+++++ T Consensus 95 l~~~g~~iP~di~ii~fd 112 (130) T 2o20_A 95 MMDKGVKVPEDFEIISGA 112 (130) T ss_dssp HHHTTCCTTTTCEEEESS T ss_pred HHHHCCCCCCCEEEEEEC T ss_conf 998289888976999837 No 99 >>1wdi_A Hypothetical protein TT0907; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: CIT; 2.10A {Thermus thermophilus} (A:) Probab=36.65 E-value=25 Score=14.85 Aligned_cols=91 Identities=5% Similarity=-0.068 Sum_probs=53.7 Q ss_pred CCCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEECCCC-CCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCC Q ss_conf 777538972156-75620146898469825676887504689-9988999862378389980789999999713544058 Q gi|255764510|r 114 TPQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-YPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKIS 191 (232) Q Consensus 114 ~~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~ 191 (232) ...+.|--|+.. +-++++.+.|+++|+.+..+..--=.-.- ...+.+..-.. ..-...-|..+++..-+.-.. . T Consensus 175 ~~~GsVAAPTAGLHFt~~ll~~l~~kGv~~a~iTLHVG~GTF~pv~~di~~H~m-h~E~~~i~~~ta~~i~~ak~~---G 250 (345) T 1wdi_A 175 RRPGSVAAPTAGLHFTPELLERLREMGVELRFLTLHVGPGTFRPVKGDPEKHEM-HAEPYAIPEEVAEAVNRAKAE---G 250 (345) T ss_dssp ------CCCCGGGGCCHHHHHHHHHTTCEEEEEEEEESGGGCCC---------C-CCEEEEECHHHHHHHHHHHHT---T T ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCC-CCEEEEECHHHHHHHHHHHHC---C T ss_conf 689855256687777899999999741505679996224444653352235787-765999829999999999973---9 Q ss_pred EEEEECCHHHHHHHHHC Q ss_conf 03997188999999976 Q gi|255764510|r 192 AAFLCLSNNIASAIPAS 208 (232) Q Consensus 192 ~~~~~ig~~tA~~~~~~ 208 (232) -+++|+|-++..+++.. T Consensus 251 ~RviAVGTT~vRaLEsa 267 (345) T 1wdi_A 251 RRVVAVGTTVVRALESA 267 (345) T ss_dssp CCEEEESHHHHHHHHHT T ss_pred CCEEEEEHHHHHHHHHH T ss_conf 94899846899999999 No 100 >>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} (A:105-237) Probab=36.64 E-value=25 Score=14.85 Aligned_cols=103 Identities=16% Similarity=0.062 Sum_probs=61.9 Q ss_pred CCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 277753897215675620-------1468984698256768875046899988999862---378389980789999999 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) ..+.++++++.|...... +.+.++++|........+..-..+...+....++ .++++|+..+...+.... T Consensus 16 ~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~ 95 (133) T 2ioy_A 16 LKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAI 95 (133) T ss_dssp TTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHHHHH T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH T ss_conf 69998799997999986999999999999987899805777516411799999999998569698399967808888779 Q ss_pred HHCCHHHC-CEEEEEC-CHHHHHHHHHCCCCEEEE Q ss_conf 71354405-8039971-889999999769966998 Q gi|255764510|r 183 SLPLPAKI-SAAFLCL-SNNIASAIPASYKNVVTV 215 (232) Q Consensus 183 ~~~~~~~~-~~~~~~i-g~~tA~~~~~~g~~~~~v 215 (232) +.+...+. ++.++++ +...+..+-..|.--..| T Consensus 96 ~al~~~gp~di~iig~d~~~~~~~~~~~~~~~~tV 130 (133) T 2ioy_A 96 KAIEAANRQGIIVVGFDGTEDALKAIKEGKMAATI 130 (133) T ss_dssp HHHHHTTCCCCEEEEEECCHHHHHHHHTTSCCEEE T ss_pred HHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEE T ss_conf 99998199987799853708899997439962899 No 101 >>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A* (A:1-165) Probab=36.50 E-value=25 Score=14.83 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=44.3 Q ss_pred CCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHC-----CCCEEE-EECHHHHHHHHH Q ss_conf 7775389721567562----014689846982567688750468999889998623-----783899-807899999997 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQ-----NADAIL-FYARSSVLYFFS 183 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~-----~~d~i~-f~S~~~v~~~~~ 183 (232) .+.++++++++....+ .+.+.|.+.|+.+..+.-++..+....-+...++.. +.|.|+ +...+..+...- T Consensus 29 ~~~~~~livtd~~~~~~~~~~i~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~d~iiaiGGGs~~D~ak~ 108 (165) T 1xah_A 29 NQFDQSFLLIDEYVNQYFANKFDDILSYENVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGF 108 (165) T ss_dssp TTCSCEEEEEEHHHHHHHHHHHC------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHH T ss_pred HHCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH T ss_conf 73597999999857899999999999777957999728876677878999888888765412342145242788878766 Q ss_pred HCCHHHCCEEEEECCHHHHHHH Q ss_conf 1354405803997188999999 Q gi|255764510|r 184 LPLPAKISAAFLCLSNNIASAI 205 (232) Q Consensus 184 ~~~~~~~~~~~~~ig~~tA~~~ 205 (232) ..........+++| |+|+... T Consensus 109 ~a~~~~~~~p~i~I-PTt~~tg 129 (165) T 1xah_A 109 VAATLLRGVHFIQV-PTTILAH 129 (165) T ss_dssp HHHHBTTCCEEEEE-ECSTTHH T ss_pred HHHHHCCCCCEEEE-ECCCCCC T ss_conf 02532378624775-0432102 No 102 >>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer; HET: NAI UGA; 1.80A {Streptococcus pyogenes} (A:307-402) Probab=35.67 E-value=26 Score=14.75 Aligned_cols=48 Identities=4% Similarity=0.061 Sum_probs=24.3 Q ss_pred HHHHHHHHHHCCCCE-EEECCEEEECCCCCCC-----CCCCCCCCEEEEECHHH Q ss_conf 699999999879829-9942100000785200-----16447587999848467 Q gi|255764510|r 12 ALRTQEKIQKMGYIP-VMMPLSYFIHDRESVF-----LAMQQSYGAIAITSSES 59 (232) Q Consensus 12 a~~~~~~L~~~G~~~-i~~Pli~i~~~~~~~~-----~~~~~~~d~iiftS~~a 59 (232) +..+++.|.+.|+++ ++=|...-........ .....++|++|++..+- T Consensus 25 a~~i~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~e~~~~aD~vii~~~h~ 78 (96) T 1dlj_A 25 IKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRYDN 78 (96) T ss_dssp HHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEECSSCCG T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHHCCCCEEECCHHHHHHCCCEEEECCCHH T ss_conf 999999999789989999998982363257478278999973794999848738 No 103 >>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} (A:156-285) Probab=35.36 E-value=26 Score=14.72 Aligned_cols=90 Identities=10% Similarity=0.083 Sum_probs=56.9 Q ss_pred CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHH Q ss_conf 7775389721567562-------01468984698256768875046899988999862---3783899807899999997 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFS 183 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~ 183 (232) .+..++.++.+..... -+.+.+.++|..+............ .......++ ..+++|+.++-..+..+++ T Consensus 15 ~G~r~I~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ai~~~~d~~A~~~~~ 93 (130) T 3ctp_A 15 KGCRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVK-MLEEDINSMKDIVNYDGIFVFNDIAAATVMR 93 (130) T ss_dssp TTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGG-GGGCCCTTGGGGGGSSEEEESSHHHHHHHHH T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHCCCCCHHHHCCHHHHHHHHH T ss_conf 699669996463454168888876201366513562223210024577-8999999985055998455246587899999 Q ss_pred HCCHHHC----CEEEEECCHHHHHH Q ss_conf 1354405----80399718899999 Q gi|255764510|r 184 LPLPAKI----SAAFLCLSNNIASA 204 (232) Q Consensus 184 ~~~~~~~----~~~~~~ig~~tA~~ 204 (232) .+...+. ++.+++++..-... T Consensus 94 ~l~~~g~~ip~di~iigfd~~~~~~ 118 (130) T 3ctp_A 94 ALKKRGVSIPQEVQIIGFDNSFIGE 118 (130) T ss_dssp HHHHTTCCTTTTCEEECSBCCTHHH T ss_pred HHHHCCCCCCCCEEECCCCCHHHHH T ss_conf 9998499988433321248768898 No 104 >>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} (A:) Probab=35.25 E-value=16 Score=16.05 Aligned_cols=53 Identities=13% Similarity=0.025 Sum_probs=27.6 Q ss_pred CEEEEECC--HHHHHHHHHHHHHCCCC-EEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 93898589--68869999999987982-999421000007852001644758799984846 Q gi|255764510|r 1 MYIVITRP--IKKALRTQEKIQKMGYI-PVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilitRp--~~~a~~~~~~L~~~G~~-~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) |||+|.-- .....+.|+.+.+. ++ .-+..++++. .....++.+||.+||-|+- T Consensus 1 Mki~I~Y~S~tGnT~~iA~~ia~~-l~~~g~~~~~~~~----~~~~~~l~~~d~vi~g~~t 56 (179) T 1yob_A 1 AKIGLFFGSNTGKTRKVAKSIKKR-FDDETMSDALNVN----RVSAEDFAQYQFLILGTPT 56 (179) T ss_dssp CCEEEEECCSSSHHHHHHHHHHTT-SCTTTBCCCEEGG----GCCHHHHHTCSEEEEEEEC T ss_pred CEEEEEEECCCHHHHHHHHHHHHH-HHHCCCEEEEECC----CCCHHHHCCCCEEEEEECC T ss_conf 909999999755689999999999-7417991899723----3787682479879999828 No 105 >>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99} (A:1-99) Probab=34.96 E-value=27 Score=14.68 Aligned_cols=69 Identities=9% Similarity=0.156 Sum_probs=40.8 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHH--CCCCCEE Q ss_conf 9389858968-869999999987982999421000007852001644758799984846799988620--0136300 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPANF--CRHTPIF 74 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~--~~~~~~~ 74 (232) |||||.=... -...+...|++.|+++......+ .......-..||.|+.--.+|.+.+.... ....|+. T Consensus 1 mrILiVeDd~~~~~~i~~~L~~~g~~v~~a~~~~-----~a~~~~~~~~~dlviLp~~~G~~ll~~lr~~~~~~pvI 72 (99) T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLE-----DGEYLMDIRNYDLVMVSDKNALSFVSRIKEKHSSIVVL 72 (99) T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHH-----HHHHHHTTSCCSEEEECCTTHHHHHHHHHHHCTTSEEE T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHH-----HHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 9899995799999999999998799999989999-----99999973698611022233211112222222222221 No 106 >>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} (A:109-240) Probab=34.78 E-value=27 Score=14.66 Aligned_cols=88 Identities=10% Similarity=-0.016 Sum_probs=59.6 Q ss_pred CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCC-CHHHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 77753897215675620-------1468984698256768875046899-988999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAY-PETTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~-~~~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+..+|.++.+...... +.+.++++|..+.....+....... ........+ ..+++|+..|...+..++ T Consensus 15 ~G~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~ 94 (132) T 3egc_A 15 RGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAM 94 (132) T ss_dssp TTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHHHHH T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCE T ss_conf 69955866127721220335558999999983998543013247752677899999998547886302202320024513 Q ss_pred HHCCHHHC----CEEEEECCHHH Q ss_conf 71354405----80399718899 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSNNI 201 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~~t 201 (232) +.+...+. ++.+++++... T Consensus 95 ~~l~~~g~~iP~di~vvg~d~~~ 117 (132) T 3egc_A 95 QALNVLGLRYGPDVEIVSFDNLP 117 (132) T ss_dssp HHHHHHTCCBTTTBEEEEESCCG T ss_pred EHHHCCCCCCCCCEEEEECCCHH T ss_conf 12220598567540145317768 No 107 >>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} (A:164-296) Probab=34.12 E-value=28 Score=14.60 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=56.8 Q ss_pred CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 77753897215675620-------1468984698256768875046899988-999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+.+++.++.+...... +.+.++++|..+.....+.......... ....++ ..+++|+..|...+..++ T Consensus 16 ~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~ 95 (133) T 3dbi_A 16 AGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVASNDDXAIGAX 95 (133) T ss_dssp TTCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHH T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH T ss_conf 49985999978999866999999999999983999883147615764677999999998348886499967899999999 Q ss_pred HHCCHHHC----CEEEEECCHHH Q ss_conf 71354405----80399718899 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSNNI 201 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~~t 201 (232) +.+...+. ++.+++++... T Consensus 96 ~~l~~~g~~vP~di~i~~~d~~~ 118 (133) T 3dbi_A 96 KALHERGVAVPEQVSVIGFDDIA 118 (133) T ss_dssp HHHHHTTCCTTTTCEEEEESCCT T ss_pred HHHHHCCCCCCCCEEEEEECCHH T ss_conf 99997599989986999989818 No 108 >>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} (A:122-254) Probab=34.12 E-value=28 Score=14.60 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=56.8 Q ss_pred CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHH-HHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 77753897215675620-------1468984698256768875046899988-999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPET-TMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~-~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+.+++.++.+...... +.+.++++|..+.....+.......... ....++ ..+++|+..|...+..++ T Consensus 16 ~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~ 95 (133) T 3brq_A 16 AGHQEIAFLTGSXDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEXLLERGAKFSALVASNDDXAIGAX 95 (133) T ss_dssp TTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHH T ss_pred HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHE T ss_conf 03655999957755653033545999999863987772035326765210567779998558998722358808884224 Q ss_pred HHCCHHHC----CEEEEECCHHH Q ss_conf 71354405----80399718899 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSNNI 201 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~~t 201 (232) +.+...+. ++.+++++... T Consensus 96 ~~l~~~g~~vP~di~i~~~d~~~ 118 (133) T 3brq_A 96 KALHERGVAVPEQVSVIGFDDIA 118 (133) T ss_dssp HHHHHHTCCTTTTCEEEEESCCT T ss_pred HHHHHCCCCCCCCCCCCCCCCCH T ss_conf 43665498788640000556717 No 109 >>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} (A:) Probab=33.91 E-value=28 Score=14.58 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=29.5 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 8869999999987982999421000007852001644758799984846 Q gi|255764510|r 10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) .-+..+++.|++.|+++....+.+..+ ......++.++|.|+. T Consensus 16 ~~A~~ia~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~ii~~~~t 58 (147) T 1f4p_A 16 YTAETIARELADAGYEVDSRDAASVEA------GGLFEGFDLVLLGCST 58 (147) T ss_dssp HHHHHHHHHHHHHTCEEEEEEGGGCCS------TTTTTTCSEEEEEECE T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCH------HHHCCCCCEEEEEEEC T ss_conf 999999999876598069986000565------5540246779999714 No 110 >>2zkl_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, isomerase; 2.61A {Staphylococcus aureus} (A:1-130) Probab=33.59 E-value=28 Score=14.55 Aligned_cols=30 Identities=17% Similarity=0.076 Sum_probs=23.6 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 9389858968-86999999998798299942 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P 30 (232) ||||||=-.. =+..++..|.+.|..++..- T Consensus 1 MkIlVtGasGfiG~~lv~~L~~~g~~v~~~~ 31 (130) T 2zkl_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEV 31 (130) T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 9899999997799999999985799499996 No 111 >>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} (A:) Probab=33.56 E-value=21 Score=15.29 Aligned_cols=38 Identities=13% Similarity=-0.039 Sum_probs=23.8 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 69999999987982999421000007852001644758799984846 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) +..+++.|+..|+++..++..+ ...+.+||.+||-|+- T Consensus 18 A~~ia~~l~~~~~~v~~~~~~~---------~~~l~~~d~ii~g~pt 55 (175) T 1ag9_A 18 AKMIQKQLGKDVADVHDIAKSS---------KEDLEAYDILLLGIPT 55 (175) T ss_dssp HHHHHHHHCTTTEEEEEGGGCC---------HHHHHTCSEEEEECCE T ss_pred HHHHHHHHCCCCCEEEECCCHH---------HHHCCCCCEEEEEECC T ss_conf 9999998551783799841123---------3311455369999646 No 112 >>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} (A:) Probab=33.51 E-value=28 Score=14.60 Aligned_cols=58 Identities=12% Similarity=-0.009 Sum_probs=35.4 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECCEEEECCCCCC-----CCCCCCCCCEEEEECHH Q ss_conf 9389858968-8699999999879829994210000078520-----01644758799984846 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPLSYFIHDRESV-----FLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~-----~~~~~~~~d~iiftS~~ 58 (232) ||||||=-.. =+..++..|.+.|.+++..---......... ........|.++..... T Consensus 1 MkILVtGatGfiG~~l~~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~ 64 (299) T 1n2s_A 1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH 64 (299) T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC T ss_conf 9799989998899999999987899999978985444668899999999997599999975312 No 113 >>2g1u_A Hypothetical protein TM1088A; , structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: AMP; 1.50A {Thermotoga maritima} (A:) Probab=33.20 E-value=29 Score=14.51 Aligned_cols=117 Identities=9% Similarity=-0.000 Sum_probs=62.4 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE--------------CCCCCCHHHHHHH-HCCCCEEEEECHH Q ss_conf 127775389721567562014689846982567688750--------------4689998899986-2378389980789 Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS--------------QDIAYPETTMKNL-LQNADAILFYARS 176 (232) Q Consensus 112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~--------------~~~~~~~~~~~~~-~~~~d~i~f~S~~ 176 (232) .....++++++..+.....+.+.|.+.|..|.-+.-=.. .......+.+..+ +.+.++|+...+. T Consensus 15 ~~~~~~~vvIiG~G~~g~~ia~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~ 94 (155) T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND 94 (155) T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC T ss_pred HHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEECCCC T ss_conf 22169808998988899999999997899699995688986667765324565410210156666544203234202698 Q ss_pred HHHHHH--HHCCHHHCCEE--EEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH Q ss_conf 999999--71354405803--997188999999976996699879999889999986 Q gi|255764510|r 177 SVLYFF--SLPLPAKISAA--FLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLP 229 (232) Q Consensus 177 ~v~~~~--~~~~~~~~~~~--~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~ 229 (232) ...++. ........... ..+-.+..++.+++.|...+ .+..-.-+.|...+. T Consensus 95 d~~n~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~vi-~~~~~~a~~l~~~~~ 150 (155) T 2g1u_A 95 DSTNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIKTI-CPAVLMIEKVKEFII 150 (155) T ss_dssp HHHHHHHHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCEEE-CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEE-CCHHHHHHHHHHHCC T ss_conf 78999999979988799849999879889999997799898-820999999999644 No 114 >>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} (A:236-373) Probab=33.14 E-value=29 Score=14.50 Aligned_cols=45 Identities=11% Similarity=-0.118 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCHHHHHHHCCCEEEE Q ss_conf 678999864220127775389721-567562014689846982567 Q gi|255764510|r 100 INLAKIIVEQKVLFTPQKPLIYLG-GKPRNFHFEDYLIEHKIPLRV 144 (232) Q Consensus 100 ~~~~~ll~~~~~~~~~~~~vl~~~-g~~~~~~l~~~L~~~g~~v~~ 144 (232) ....+.+........++++++++| .....+.+.+.|.+.|+.+.. T Consensus 16 ~~~~~~l~~~i~~~~~~~~~lIf~~t~~~~~~l~~~L~~~~~~~~~ 61 (138) T 2v1x_A 16 EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGA 61 (138) T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEE T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHCCCEEEE T ss_conf 5567788898876335776169975422145677887641860331 No 115 >>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} (A:95-251) Probab=32.91 E-value=29 Score=14.48 Aligned_cols=17 Identities=18% Similarity=-0.037 Sum_probs=8.7 Q ss_pred HHHHHHHHCCCCEEEEC Q ss_conf 99999998798299942 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMP 30 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~P 30 (232) -++..|++.|++++.+. T Consensus 23 ~va~~l~~~G~~V~~lG 39 (157) T 3bul_A 23 IVGVVLQCNNYEIVDLG 39 (157) T ss_dssp HHHHHHHTTTCEEEECC T ss_pred HHHHHHHHCCEEEEEEC T ss_conf 99999986894799403 No 116 >>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} (A:) Probab=32.70 E-value=29 Score=14.46 Aligned_cols=40 Identities=15% Similarity=-0.021 Sum_probs=25.6 Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 86999999998798299942100000785200164475879998484 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) -+..+++.|+..|.++....+-+ ....++.+||.++|-|| T Consensus 15 ~A~~iae~l~~~g~~v~~~~~~~-------~~~~~l~~~d~iv~g~p 54 (138) T 5nul_A 15 MAELIAKGIIESGKDVNTINVSD-------VNIDELLNEDILILGCS 54 (138) T ss_dssp HHHHHHHHHHHTTCCCEEEEGGG-------CCHHHHTTCSEEEEEEC T ss_pred HHHHHHHHHHHCCCCCEECCCCC-------CCCCHHCCCCEEEEEEE T ss_conf 99999999876599522011211-------34210113877999980 No 117 >>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} (A:1-185) Probab=32.23 E-value=30 Score=14.41 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=31.5 Q ss_pred EEEECCHHHHHHHHHHHHHC-CCCEEEEC-----------CEEEECC--CC---CCCCCCCCCCCEEEEECHHHHH Q ss_conf 89858968869999999987-98299942-----------1000007--85---2001644758799984846799 Q gi|255764510|r 3 IVITRPIKKALRTQEKIQKM-GYIPVMMP-----------LSYFIHD--RE---SVFLAMQQSYGAIAITSSESLS 61 (232) Q Consensus 3 ilitRp~~~a~~~~~~L~~~-G~~~i~~P-----------li~i~~~--~~---~~~~~~~~~~d~iiftS~~av~ 61 (232) |+.++.-+-+...++.|.+. +++....+ ++++... .. +.......++|.+||-|+++-+ T Consensus 8 iv~S~~DpAS~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~d~ld~~~~~~~~~d~iiflSrH~s~ 83 (185) T 1yqe_A 8 VVCSESDTAGQNIKDNLLTFADFEEKDVGEFKLYLSDEFYIAETKERLIYADHIDEKLAKYIDFEEILFASRHSSK 83 (185) T ss_dssp EEEETTCHHHHHHHHHHTTSSCCEEEEETTEEEEECSSCEEEEESSCGGGCTTHHHHHTTTCCCSEEEEEEEEECT T ss_pred EEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCEEECCHHHHHHCCCCCCEEEEEECCCCC T ss_conf 9985888466889999998649865777765314347589999356304404603443013798779998523457 No 118 >>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} (A:) Probab=32.22 E-value=30 Score=14.41 Aligned_cols=97 Identities=9% Similarity=0.113 Sum_probs=41.6 Q ss_pred CCEEEEECCCC----CCCCHHHHHHHCCCEEEEEEEEEE---CCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCH Q ss_conf 75389721567----562014689846982567688750---468999889998623783899-8078999999971354 Q gi|255764510|r 116 QKPLIYLGGKP----RNFHFEDYLIEHKIPLRVIDCYYS---QDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLP 187 (232) Q Consensus 116 ~~~vl~~~g~~----~~~~l~~~L~~~g~~v~~~~vY~~---~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~ 187 (232) .++|.++.... ....+.+.|.+.|+.+.-+..... +.-......+.++-..+|.++ +..+..+...++.+.. T Consensus 13 pk~iAViG~S~~~~~~g~~v~~~l~~~g~~v~~v~p~~~~~ei~G~~~~~sl~eip~~iD~v~i~~p~~~~~~~i~e~~~ 92 (145) T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQEAIA 92 (145) T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCSTHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCHHHCCCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 89399992079999838999999986898689852454412562062257544467621168995149999999999997 Q ss_pred HHCCEEEE---ECCHHHHHHHHHCCCCE Q ss_conf 40580399---71889999999769966 Q gi|255764510|r 188 AKISAAFL---CLSNNIASAIPASYKNV 212 (232) Q Consensus 188 ~~~~~~~~---~ig~~tA~~~~~~g~~~ 212 (232) .+.+..++ .+++...+.+++.|... T Consensus 93 ~g~k~~~~~~~~~~e~~~~~a~~~gi~i 120 (145) T 2duw_A 93 IGAKTLWLQLGVINEQAAVLAREAGLSV 120 (145) T ss_dssp HTCCEEECCTTCCCHHHHHHHHTTTCEE T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEE T ss_conf 2997599524544199999999969989 No 119 >>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} (A:) Probab=32.21 E-value=30 Score=14.41 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=8.1 Q ss_pred CCCCCCEEEEECHH Q ss_conf 44758799984846 Q gi|255764510|r 45 MQQSYGAIAITSSE 58 (232) Q Consensus 45 ~~~~~d~iiftS~~ 58 (232) .+.++|.|||.||. T Consensus 81 ~i~~aD~iV~~sP~ 94 (191) T 1t0i_A 81 IVNALDIIVFVTPQ 94 (191) T ss_dssp HHHTCSEEEEEEEC T ss_pred HHHHCCCCEEEEEE T ss_conf 99838874899750 No 120 >>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii OT3} (A:) Probab=31.21 E-value=31 Score=14.31 Aligned_cols=102 Identities=10% Similarity=-0.083 Sum_probs=42.6 Q ss_pred CCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCC-HHHHH-HHH-CCCCEEEEECHHHHHHHHHHCCHHH Q ss_conf 27775389721567562014689846982567688750468999-88999-862-3783899807899999997135440 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYP-ETTMK-NLL-QNADAILFYARSSVLYFFSLPLPAK 189 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~-~~~~~-~~~-~~~d~i~f~S~~~v~~~~~~~~~~~ 189 (232) ...+..|+-.+....-..+.....+.|. ...+|-++..+.. ...+. .+. .++++.+++-++... +++.+..-- T Consensus 107 i~~~~~ILT~~~S~~V~~~l~~a~~~~~---~~~v~V~EsrP~~eG~~la~~L~~~gi~vt~i~ds~~~~-~m~~vd~Vl 182 (276) T 1vb5_A 107 IDDGDVIITHSFSSTVLEIIRTAKERKK---RFKVILTESSPDYEGLHLARELEFSGIEFEVITDAQMGL-FCREASIAI 182 (276) T ss_dssp CCTTEEEECCSCCHHHHHHHHHHHHTTC---CEEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGHHH-HHTTCSEEE T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCC---CEEEEEECCCCCCCCHHHHHHHHHCCCCEEEECHHHHHH-HHHHCCEEE T ss_conf 5999889971833899999999998799---669999737765565899999997198338955568999-966388799 Q ss_pred CC--------EEEEECC-HHHHHHHHHCCCCEEEECCC Q ss_conf 58--------0399718-89999999769966998799 Q gi|255764510|r 190 IS--------AAFLCLS-NNIASAIPASYKNVVTVACF 218 (232) Q Consensus 190 ~~--------~~~~~ig-~~tA~~~~~~g~~~~~va~~ 218 (232) .. ..+--+| ..+|-.++..+.....+++. T Consensus 183 iGad~i~~nG~v~nk~Gt~~iAl~Ak~~~vPv~v~~e~ 220 (276) T 1vb5_A 183 VGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAET 220 (276) T ss_dssp ECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG T ss_pred EEEEEEECCCCEEECCCHHHHHHHHHHCCCCEEEECCC T ss_conf 85348963898433021778999998638972896045 No 121 >>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} (A:1-98,A:233-276) Probab=31.08 E-value=31 Score=14.30 Aligned_cols=64 Identities=6% Similarity=0.091 Sum_probs=31.4 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCC-CCCCCCCCCCCCEEEEECHHHHHHHH-HHHCCCCCEECCC Q ss_conf 9999999879829994210000078-52001644758799984846799988-6200136300041 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDR-ESVFLAMQQSYGAIAITSSESLSTLP-ANFCRHTPIFAIG 77 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~-~~~~~~~~~~~d~iiftS~~av~~~~-~~~~~~~~~~~vg 77 (232) .+.+.++++|++++....-.-.... .......-...|+||+.+.+.-.-.. .....+.|+..++ T Consensus 20 gi~~~a~~~G~~l~i~~~~~~~~~~~~~i~~ll~~~vDGIIl~~~~~~~~~~~~l~~~~iPvV~id 85 (142) T 2h0a_A 20 GIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTERPVVLVD 85 (142) T ss_dssp HHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC------CCSCSSCEEEES T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCC T ss_conf 999999986998999978998699999999998558987898413300678998765146521222 No 122 >>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} (A:) Probab=31.08 E-value=31 Score=14.30 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=51.5 Q ss_pred CCCCEEEEECCCCC----CCCHHHHHHHCCCEEEEEE-EEEECCCCCCHHHHHHHHCCCCEEE-EECHHHHHHHHHHCCH Q ss_conf 77753897215675----6201468984698256768-8750468999889998623783899-8078999999971354 Q gi|255764510|r 114 TPQKPLIYLGGKPR----NFHFEDYLIEHKIPLRVID-CYYSQDIAYPETTMKNLLQNADAIL-FYARSSVLYFFSLPLP 187 (232) Q Consensus 114 ~~~~~vl~~~g~~~----~~~l~~~L~~~g~~v~~~~-vY~~~~~~~~~~~~~~~~~~~d~i~-f~S~~~v~~~~~~~~~ 187 (232) ...+++.++..... ...+...|...|+.+.-+. -+....-......+.++-.++|.++ +..+..+...++.+.. T Consensus 12 ~~p~~iaVvGas~~~~~~g~~i~~~l~~~g~~v~~Vnp~~~~i~g~~~y~sl~di~~~vDl~vi~vp~~~~~~~v~ea~~ 91 (138) T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVE 91 (138) T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHHH T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 21577999832799998199999999978997999715543147973555641134332068998078999999999985 Q ss_pred HHCCEEEE---ECCHHHHHHHHHCCCCE Q ss_conf 40580399---71889999999769966 Q gi|255764510|r 188 AKISAAFL---CLSNNIASAIPASYKNV 212 (232) Q Consensus 188 ~~~~~~~~---~ig~~tA~~~~~~g~~~ 212 (232) .+.+..++ .++....+.+++.|... T Consensus 92 ~gi~~~~~~~~g~~e~~~~~a~~~gi~v 119 (138) T 1y81_A 92 AGFKKLWFQPGAESEEIRRFLEKAGVEY 119 (138) T ss_dssp TTCCEEEECTTSCCHHHHHHHHHHTCEE T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCEE T ss_conf 6998898506601899999999849989 No 123 >>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A substrate tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} (A:1-218) Probab=30.99 E-value=31 Score=14.29 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=44.7 Q ss_pred EEEEECC-HHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHH-HHH------------HHHHH Q ss_conf 3898589-688699999999879829994210000078520016447587999848467-999------------88620 Q gi|255764510|r 2 YIVITRP-IKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSES-LST------------LPANF 67 (232) Q Consensus 2 ~ilitRp-~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~a-v~~------------~~~~~ 67 (232) +|+|..- ......+.+.|++.|+++...|.- ....+.++|.||++-..+ +.. +.... T Consensus 6 ~I~vid~~~~~~~~~~~~l~~~g~~~~vv~~~---------~~~~l~~~dgiIlpGg~~~~~~~~~~~~~~~~~~i~~~~ 76 (218) T 1jvn_A 6 VVHVIDVESGNLQSLTNAIEHLGYEVQLVKSP---------KDFNISGTSRLILPGVGNYGHFVDNLFNRGFEKPIREYI 76 (218) T ss_dssp EEEEECCSCSCCHHHHHHHHHTTCEEEEESSG---------GGCCSTTCSCEEEEECSCHHHHHHHHHHTTCHHHHHHHH T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCEEEEECC---------CHHHHHCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHH T ss_conf 89999799877999999999869976999687---------866884599899899997799999999878699999999 Q ss_pred CCCCCEECCCHHHHHHHHH Q ss_conf 0136300041589999764 Q gi|255764510|r 68 CRHTPIFAIGEASACLARQ 86 (232) Q Consensus 68 ~~~~~~~~vg~~t~~~~~~ 86 (232) .+..|++.+..+-.-.... T Consensus 77 ~~~~PilGIC~G~Q~l~~~ 95 (218) T 1jvn_A 77 ESGKPIMGIXVGLQALFAG 95 (218) T ss_dssp HTTCCEEEEEHHHHTTEEE T ss_pred HCCCCEEEHHHHHHHHCCC T ss_conf 8699499968979984548 No 124 >>3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} (A:1-100,A:232-251) Probab=30.57 E-value=32 Score=14.24 Aligned_cols=16 Identities=13% Similarity=0.038 Sum_probs=7.6 Q ss_pred CCCEEEEECHHHHHHH Q ss_conf 7838998078999999 Q gi|255764510|r 166 NADAILFYARSSVLYF 181 (232) Q Consensus 166 ~~d~i~f~S~~~v~~~ 181 (232) ++|+|+|.+...-..+ T Consensus 64 ~vDGIIi~~~~~~~~~ 79 (120) T 3e61_A 64 NCTGMISTAFNENIIE 79 (120) T ss_dssp TCSEEEECGGGHHHHH T ss_pred CCCCEEECCCCHHHHH T ss_conf 6642253143115578 No 125 >>3e4r_A Nitrate transport protein; ALFA-beta protein, substrate-binding protein domain, alkanesulfonate-binding protein; HET: EPE; 2.01A {Xanthomonas axonopodis PV} (A:110-207) Probab=30.41 E-value=32 Score=14.23 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=49.9 Q ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECHHHHHHHHHH Q ss_conf 12777538972156756201468984698256768875046899988999862-37838998078999999971 Q gi|255764510|r 112 LFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYARSSVLYFFSL 184 (232) Q Consensus 112 ~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~~~v~~~~~~ 184 (232) ...++++|.+..|......+...|++.|..-....++.. ...+.+..+. +++|+++...+.......+. T Consensus 18 ~DL~Gk~vgv~~gs~~~~~~~~~l~~~g~~~~~~~~~~~----~~~~~~~al~~g~vDa~~~~~p~~~~~~~~~ 87 (98) T 3e4r_A 18 ADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL----SPANARAAFAAGQVDAWAIWDPWYSALTLDG 87 (98) T ss_dssp GGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC----CHHHHHHHHHTTCCSEEEEETTHHHHHHHTT T ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC----CCHHHHHHHHHCCCCEEEECCHHHHHHHHCC T ss_conf 452587210133320377777689984025444321015----8257778886124643884147999999739 No 126 >>3d3j_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.80A {Homo sapiens} (A:) Probab=30.36 E-value=32 Score=14.22 Aligned_cols=72 Identities=10% Similarity=0.040 Sum_probs=39.8 Q ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH--------CCCCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEE Q ss_conf 9997641012235444545678999864220--------127775389721567562----0146898469825676887 Q gi|255764510|r 81 ACLARQKGFTQIFHGKDNSINLAKIIVEQKV--------LFTPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCY 148 (232) Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--------~~~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY 148 (232) .+++.+.|.......+..+...++.+.+... ......+|+++||.+.+. .....|..+|+.|..+... T Consensus 89 e~~~~~~Gls~~~LmE~Ag~~~a~~i~~~~~~~~~~~~~~~~~~~~V~vl~G~gnnGgdgl~~AR~L~~~G~~V~v~~~~ 168 (306) T 3d3j_A 89 LSVAEKHGLTLERRLEMTGVCASQMALTLLGGPNRLNPKNVHQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPN 168 (306) T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC-----------CCCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCC T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 99999809988999999999999999998287632464546889979999899987299999999999779838999727 Q ss_pred EECC Q ss_conf 5046 Q gi|255764510|r 149 YSQD 152 (232) Q Consensus 149 ~~~~ 152 (232) .... T Consensus 169 ~~~~ 172 (306) T 3d3j_A 169 FVKM 172 (306) T ss_dssp CSSC T ss_pred CCCC T ss_conf 8667 No 127 >>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} (A:) Probab=29.86 E-value=33 Score=14.17 Aligned_cols=31 Identities=10% Similarity=0.013 Sum_probs=25.1 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEECC Q ss_conf 9389858968-869999999987982999421 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMPL 31 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~Pl 31 (232) ||||||=-.. =+..++..|.+.|.++...-. T Consensus 1 MkIlVtGatGfIG~~l~~~L~~~G~~v~~~~r 32 (273) T 2ggs_A 1 MRTLITGASGQLGIELSRLLSERHEVIKVYNS 32 (273) T ss_dssp CCEEEETTTSHHHHHHHHHHTTTSCEEEEESS T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEECC T ss_conf 98999899988999999999729989999778 No 128 >>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} (A:1-111,A:215-236) Probab=29.18 E-value=34 Score=14.10 Aligned_cols=75 Identities=8% Similarity=-0.027 Sum_probs=39.4 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCC--CCCCCCCCCCCCEEEEECHHHHHH--HHHHHCCCCCEEC Q ss_conf 93898589688699999999879829994210000078--520016447587999848467999--8862001363000 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDR--ESVFLAMQQSYGAIAITSSESLST--LPANFCRHTPIFA 75 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~--~~~~~~~~~~~d~iiftS~~av~~--~~~~~~~~~~~~~ 75 (232) |||.+.=-..-+...+..+.+.|++.+..--.+.+..+ .+.+.....+.|.++..+++...+ ....+.++.++++ T Consensus 1 lkVgiIG~G~~g~~~~~~l~~~~~eivav~d~~~~~a~~~~~~e~l~~~~~DvVvi~t~~~~h~~~~~~al~~Gk~Vi~ 79 (133) T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIV 79 (133) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEE T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEE T ss_conf 9899997888999999999719988999997896404444898998258971999936863579999998724888999 No 129 >>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} (A:163-292) Probab=29.07 E-value=34 Score=14.09 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=53.2 Q ss_pred CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHH--HCCCCEEEEECHHHHHHHHHH Q ss_conf 7775389721567562-------0146898469825676887504689998899986--237838998078999999971 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNL--LQNADAILFYARSSVLYFFSL 184 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~--~~~~d~i~f~S~~~v~~~~~~ 184 (232) .+..+|.++++..... -+.+.++++|..+..................... ..+++++++.|...+..++.. T Consensus 15 ~G~r~I~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~l~~ 94 (130) T 1jye_A 15 LGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRA 94 (130) T ss_dssp HTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHH T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHH T ss_conf 59966999947743228999999999999975998643434775177799999999735999836874888999999999 Q ss_pred CCHHHC----CEEEEECC Q ss_conf 354405----80399718 Q gi|255764510|r 185 PLPAKI----SAAFLCLS 198 (232) Q Consensus 185 ~~~~~~----~~~~~~ig 198 (232) +...+. ++.++|+. T Consensus 95 l~~~g~~ip~di~ivgfd 112 (130) T 1jye_A 95 ITESGLRVGADISVVGYD 112 (130) T ss_dssp HHHTTCCBTTTBEEECSB T ss_pred HHHHCCCCCCCEEEEEEC T ss_conf 998089789986999837 No 130 >>2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} (A:) Probab=28.97 E-value=34 Score=14.08 Aligned_cols=107 Identities=9% Similarity=0.007 Sum_probs=47.1 Q ss_pred CCCEEEEECCC-CCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEE----CHHHHHHHHHHCCH Q ss_conf 77538972156-756201468984698256768875046899988999862--378389980----78999999971354 Q gi|255764510|r 115 PQKPLIYLGGK-PRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFY----ARSSVLYFFSLPLP 187 (232) Q Consensus 115 ~~~~vl~~~g~-~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~----S~~~v~~~~~~~~~ 187 (232) ...+|+++--+ ..+..+...|.+.|+.|... ....+.+..+. .++|.|+.= --++++ +++.+.. T Consensus 14 ~~~rILiVdDd~~~~~~i~~~L~~~g~~v~~a--------~~g~~al~~~~~~~~~DliilD~~mP~~~G~e-l~~~ir~ 84 (138) T 2b4a_A 14 QPFRVTLVEDEPSHATLIQYHLNQLGAEVTVH--------PSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFS-LLDIVKE 84 (138) T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHTGGGGGSCSEEEEETTCTTSCHHH-HHHHHTT T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEC--------CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-HHHHHHH T ss_conf 78879999699999999999999869989744--------99999999996469997999837777885799-9999997 Q ss_pred HHCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH Q ss_conf 4058039971889999999769966998799998899999861 Q gi|255764510|r 188 AKISAAFLCLSNNIASAIPASYKNVVTVACFPKETSLLKLLPL 230 (232) Q Consensus 188 ~~~~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll~al~~ 230 (232) ....+.++.++..--+..+..+....++.+..+.+.|++.++. T Consensus 85 ~~~~~pii~lTa~~~~~~~~~~~~~dyl~KP~~~~eL~a~V~~ 127 (138) T 2b4a_A 85 QTKQPSVLILTTGRHELIESSEHNLSYLQKPFAISELRAAIDY 127 (138) T ss_dssp SSSCCEEEEEESCC--CCCCSSSCEEEEESSCCHHHHHHHHHH T ss_pred CCCCCCEEEEECCCCHHHHHHCCCCCEEECCCCHHHHHHHHHH T ss_conf 0998978999888539999852699889898999999999998 No 131 >>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:126-269) Probab=28.86 E-value=34 Score=14.07 Aligned_cols=108 Identities=6% Similarity=-0.050 Sum_probs=59.6 Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCC-----------CCHHHHHHHHCCCCEEEE Q ss_conf 998642201277753897215675620146898469825676887504689-----------998899986237838998 Q gi|255764510|r 104 KIIVEQKVLFTPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIA-----------YPETTMKNLLQNADAILF 172 (232) Q Consensus 104 ~ll~~~~~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-----------~~~~~~~~~~~~~d~i~f 172 (232) ..+.+......+++++.++........+.+.|.+.|.+|. +|.+.+.+ .......+.+.+.|.|+. T Consensus 18 ~~~~~~~~~~l~g~~v~viG~G~iG~~~a~~l~~~g~~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DiVi~ 94 (144) T 3d4o_A 18 XXAIQHTDFTIHGANVAVLGLGRVGXSVARKFAALGAKVK---VGARESDLLARIAEXGXEPFHISKAAQELRDVDVCIN 94 (144) T ss_dssp HHHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEE---EEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEE T ss_pred HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE---EEECCHHHHHHHHHHCCEEEECCHHHHHHCCCCEEEE T ss_conf 9999707967589999998926999999999985799899---9938847689999719878841205565478999998 Q ss_pred ECHHH--HHHHHHHCCHHHCCEEEEECCH----HHHHHHHHCCCCEEEECC Q ss_conf 07899--9999971354405803997188----999999976996699879 Q gi|255764510|r 173 YARSS--VLYFFSLPLPAKISAAFLCLSN----NIASAIPASYKNVVTVAC 217 (232) Q Consensus 173 ~S~~~--v~~~~~~~~~~~~~~~~~~ig~----~tA~~~~~~g~~~~~va~ 217 (232) ..|.. .+..++.+++. ..++-+|. ...+.++..+-+.+.++. T Consensus 95 ~~p~~~i~~~~~~~~k~g---~iiid~~~~~~~~~~~~~~~l~~~~i~~~~ 142 (144) T 3d4o_A 95 TIPALVVTANVLAEXPSH---TFVIDLASKPGGTDFRYAEKRGIKALLVPG 142 (144) T ss_dssp CCSSCCBCHHHHHHSCTT---CEEEECSSTTCSBCHHHHHHHTCEEEECCC T ss_pred CCCCCCCCHHHHHHCCCC---CEEEEECCCCCCCCHHHHHHHCCEEEEECC T ss_conf 998644689999627999---589991899899898999971977999679 No 132 >>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* (A:) Probab=28.84 E-value=34 Score=14.06 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=24.6 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 9389858968-86999999998798299942 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P 30 (232) ||||||=-.. -+..++..|.+.|.+++..- T Consensus 1 MkVlVtGatG~iG~~lv~~Ll~~g~~V~~~~ 31 (311) T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLD 31 (311) T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 9699988878899999999997869899997 No 133 >>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative reductase, PSI; 1.28A {Pseudomonas aeruginosa PAO1} (A:) Probab=28.64 E-value=34 Score=14.04 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=27.8 Q ss_pred CEEEEE----CCHHHHHHHHHHHHHC---CCCEEEECCEEEE--CC-------CCCC--CCCCCCCCCEEEEECHH Q ss_conf 938985----8968869999999987---9829994210000--07-------8520--01644758799984846 Q gi|255764510|r 1 MYIVIT----RPIKKALRTQEKIQKM---GYIPVMMPLSYFI--HD-------RESV--FLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilit----Rp~~~a~~~~~~L~~~---G~~~i~~Pli~i~--~~-------~~~~--~~~~~~~~d~iiftS~~ 58 (232) ||||+. |+...+.++++.+.+. |.++..+-+-+.. +. .++. ....+.++|.|||.||. T Consensus 7 mkil~i~gS~r~~s~t~~l~~~~~~~~~~~~ev~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~i~~AD~iI~~sP~ 82 (193) T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPE 82 (193) T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCE T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC T ss_conf 6799998989988889999999998647998899985445876400120249989999999985128867996641 No 134 >>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix bundle (MTAC); HET: B13; 2.50A {Methanosarcina barkeri} (B:119-258) Probab=28.52 E-value=34 Score=14.03 Aligned_cols=104 Identities=7% Similarity=-0.041 Sum_probs=49.6 Q ss_pred CCEEEEECCCCC-----CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH-CCCCEEEEECH-----HHHHHHHHH Q ss_conf 753897215675-----6201468984698256768875046899988999862-37838998078-----999999971 Q gi|255764510|r 116 QKPLIYLGGKPR-----NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL-QNADAILFYAR-----SSVLYFFSL 184 (232) Q Consensus 116 ~~~vl~~~g~~~-----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~-~~~d~i~f~S~-----~~v~~~~~~ 184 (232) ..++++.+-.+- ...+...|+..|+.|..+-.- .+. .+....+. .++|.|.++.. ..+..+.+. T Consensus 5 ~~~vl~~~~~gd~H~lG~~~va~~lr~~G~~V~~lG~~--~p~---~~l~~~~~~~~~d~V~lS~~~~~~~~~~~~~~~~ 79 (140) T 2i2x_B 5 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VPA---EEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDM 79 (140) T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CCS---HHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEECCCC--CCH---HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH T ss_conf 43046631488676689999999999779908965888--987---9999999971788598652345325889999999 Q ss_pred CCHHHCCEEEEECCHHHH-HHHHHCCCCEEEECCCC-CHHHHHH Q ss_conf 354405803997188999-99997699669987999-9889999 Q gi|255764510|r 185 PLPAKISAAFLCLSNNIA-SAIPASYKNVVTVACFP-KETSLLK 226 (232) Q Consensus 185 ~~~~~~~~~~~~ig~~tA-~~~~~~g~~~~~va~~p-~~~~ll~ 226 (232) +.....++.+++-|..+. +..++.|. +.++... +...++. T Consensus 80 lr~~~~~~~v~vGG~~~~~~~~~~~g~--d~~~~~~~~~~~~~~ 121 (140) T 2i2x_B 80 LLENGIKIPFACGGGAVNQDFVSQFAL--GVYGEEAADAPKIAD 121 (140) T ss_dssp HHTTTCCCCEEEESTTCCHHHHHTSTT--EEECSSTTHHHHHHH T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHCC--CEECCCHHHHHHHHH T ss_conf 984699973998898699999998298--847179999999999 No 135 >>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} (A:1-106,A:224-276) Probab=28.44 E-value=35 Score=14.02 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=29.5 Q ss_pred HHHHHHHCCCCEEEECCEEEECC-CCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHH Q ss_conf 99999987982999421000007-852001644758799984846799988620013630004158 Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHD-RESVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEA 79 (232) Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~-~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~ 79 (232) +...++++|+.++..+.-.-... ........-...|++|+.+...-.........+.|+..++.. T Consensus 29 i~~~~~~~gy~l~i~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~l~~~~iPvV~i~~~ 94 (159) T 3jy6_A 29 ISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDRE 94 (159) T ss_dssp HHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCC T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCC T ss_conf 999999869999999489998999999999995388853124620047788888628730002345 No 136 >>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} (A:) Probab=28.15 E-value=35 Score=13.99 Aligned_cols=10 Identities=10% Similarity=0.022 Sum_probs=3.1 Q ss_pred HHCCCCEEEE Q ss_conf 9769966998 Q gi|255764510|r 206 PASYKNVVTV 215 (232) Q Consensus 206 ~~~g~~~~~v 215 (232) ...|.+...+ T Consensus 202 ~~~~Irvn~i 211 (293) T 3grk_A 202 GPQNIRVNAI 211 (293) T ss_dssp GGGTEEEEEE T ss_pred HHHCEEEEEE T ss_conf 0519489997 No 137 >>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:1-144,A:335-393) Probab=27.78 E-value=36 Score=13.95 Aligned_cols=11 Identities=18% Similarity=0.196 Sum_probs=3.9 Q ss_pred HHHHHCCCCEE Q ss_conf 99998798299 Q gi|255764510|r 17 EKIQKMGYIPV 27 (232) Q Consensus 17 ~~L~~~G~~~i 27 (232) +.|+++|.+.+ T Consensus 61 ~~Le~~g~e~~ 71 (203) T 2nac_A 61 KYLESNGHTLV 71 (203) T ss_dssp HHHHHTTCEEE T ss_pred HHHHHCCCEEE T ss_conf 99997898899 No 138 >>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Nostoc SP} PDB: 2klb_A (A:) Probab=27.71 E-value=36 Score=13.94 Aligned_cols=44 Identities=16% Similarity=0.058 Sum_probs=20.3 Q ss_pred HHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 6999999998798299942100000785200164475879998484 Q gi|255764510|r 12 ALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 12 a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) +..+++.|++.|.++...++-+..+. +....++.+||.+||-|+ T Consensus 22 A~~i~~~l~~~g~~v~~~~~~~~~~~--~~~~~~~~~~d~ii~g~p 65 (159) T 3fni_A 22 AQAIINGITKTGVGVDVVDLGAAVDL--QELRELVGRCTGLVIGXS 65 (159) T ss_dssp HHHHHHHHHHTTCEEEEEESSSCCCH--HHHHHHHHTEEEEEEECC T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCH--HHHHHHHHHCCEEEECCC T ss_conf 99999999852992375423657866--889999975898997687 No 139 >>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase/DNA complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} (A:183-237) Probab=27.44 E-value=30 Score=14.35 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=8.4 Q ss_pred CCCHHHHHHHHHHCCCC Q ss_conf 04158999976410122 Q gi|255764510|r 75 AIGEASACLARQKGFTQ 91 (232) Q Consensus 75 ~vg~~t~~~~~~~~~~~ 91 (232) -+|+.|++.+.+.|... T Consensus 3 GIG~~t~~kL~~~GI~t 19 (55) T 1jx4_A 3 GIGNITAEKLKKLGINK 19 (55) T ss_dssp TCCHHHHHHHHTTTCCB T ss_pred CCCHHHHHHHHHHCCCC T ss_conf 99667999999848968 No 140 >>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:1-100,A:298-333) Probab=27.43 E-value=36 Score=13.91 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=30.3 Q ss_pred CEEEEECCHHHHHHHHHHHHH-CCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH Q ss_conf 938985896886999999998-7982999421000007852001644758799984846 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQK-MGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~-~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~ 58 (232) ||+.+.-+.+-.....+.|++ .+.+.+..+-... +.......++|++++.+.. T Consensus 1 MKi~Vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~-----eel~~~i~dadaIiv~~~~ 54 (136) T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLD-----ENTVEWAKGFDGINSLQTT 54 (136) T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCC-----TTGGGGGTTCSEEEECCSS T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHCCCCEEEEECCC T ss_conf 97999807775799999998875958998379998-----8999984899889994689 No 141 >>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A (A:124-287) Probab=27.40 E-value=36 Score=13.91 Aligned_cols=100 Identities=11% Similarity=-0.039 Sum_probs=56.5 Q ss_pred CEEEEECHH-HHHHHHHH-HCCCCCEECC---CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECC Q ss_conf 799984846-79998862-0013630004---158999976410122354445456789998642201277753897215 Q gi|255764510|r 50 GAIAITSSE-SLSTLPAN-FCRHTPIFAI---GEASACLARQKGFTQIFHGKDNSINLAKIIVEQKVLFTPQKPLIYLGG 124 (232) Q Consensus 50 d~iiftS~~-av~~~~~~-~~~~~~~~~v---g~~t~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~vl~~~g 124 (232) +.|+|+|.. |....... ...+..+.+. -..+...+...|......+..+.....+.+... .....++++++. T Consensus 3 ~~i~~~~gt~a~~~~l~a~~~~Gd~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~---~~~~~~~v~~~~ 79 (164) T 2w8t_A 3 GAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQQGNAEIVRFRHNSVEDLDKRLGRL---PKEPAKLVVLEG 79 (164) T ss_dssp EEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHHHSCSEEEEECTTCHHHHHHHHHTS---CSSSCEEEEEES T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHC---CCCCCEEEEECC T ss_conf 69995789999999999997269469962675470221632357616994678578999999844---346861687246 Q ss_pred C-------CCCCCHHHHHHHCCCEEEEEEEEEECC Q ss_conf 6-------756201468984698256768875046 Q gi|255764510|r 125 K-------PRNFHFEDYLIEHKIPLRVIDCYYSQD 152 (232) Q Consensus 125 ~-------~~~~~l~~~L~~~g~~v~~~~vY~~~~ 152 (232) . ...+.+.+..+++|..+..-..|..-. T Consensus 80 ~~np~G~~~~~~~i~~~a~~~~~~li~D~~~~~~~ 114 (164) T 2w8t_A 80 VYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGF 114 (164) T ss_dssp EETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCC T ss_conf 65787766879999999997495415433202442 No 142 >>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A* (A:) Probab=27.29 E-value=36 Score=13.90 Aligned_cols=58 Identities=3% Similarity=-0.030 Sum_probs=31.4 Q ss_pred CEEEEE----CCHHHHHHH----HHHH-HHCCCCEEEECCEEEECC--------CCCC--CCCCCCCCCEEEEECHH Q ss_conf 938985----896886999----9999-987982999421000007--------8520--01644758799984846 Q gi|255764510|r 1 MYIVIT----RPIKKALRT----QEKI-QKMGYIPVMMPLSYFIHD--------RESV--FLAMQQSYGAIAITSSE 58 (232) Q Consensus 1 M~ilit----Rp~~~a~~~----~~~L-~~~G~~~i~~Pli~i~~~--------~~~~--~~~~~~~~d~iiftS~~ 58 (232) ||||+. ||.....++ ++.+ +..|.++-.+-+-+.... +++. ....+..+|.|||.||. T Consensus 3 mkilvI~gS~r~~s~t~~l~~~~~~~l~~~~g~~v~~i~l~~~~~~~~~~~~~~~d~~~~~~e~i~~AD~iI~~sP~ 79 (197) T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPI 79 (197) T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEEC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECH T ss_conf 70999989899676799999999998776559869999734577765423568988999999999709979998301 No 143 >>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosphatase, mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A (A:1-233) Probab=27.21 E-value=36 Score=13.89 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=39.7 Q ss_pred CEEEEECC----HHHHHHHHHHHHHCCCCEEEECCEEEECCC------CCCCCCCCCCCCEEEEEC-H-HHHHHHHHHHC Q ss_conf 93898589----688699999999879829994210000078------520016447587999848-4-67999886200 Q gi|255764510|r 1 MYIVITRP----IKKALRTQEKIQKMGYIPVMMPLSYFIHDR------ESVFLAMQQSYGAIAITS-S-ESLSTLPANFC 68 (232) Q Consensus 1 M~ilitRp----~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~------~~~~~~~~~~~d~iiftS-~-~av~~~~~~~~ 68 (232) ||||||=. .+.-..|++.|++.|--.+..|--+-.-.. ......+..+..+..+.. | -.|......+. T Consensus 2 M~ILiTNDDGi~s~Gl~~L~~al~~~g~V~VvAP~~~qSg~g~ait~~~pl~v~~~~~~~~~~v~GTPaDcv~~al~~l~ 81 (233) T 2v4n_A 2 MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALM 81 (233) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTSEEEEEEESSCCTTCTTCCCCSSCCEEEECTTSCEEEETCCHHHHHHHHHHTTS T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHCCCC T ss_conf 67999707988988899999999866998999229998656146568998168995482589963882678988641015 Q ss_pred C Q ss_conf 1 Q gi|255764510|r 69 R 69 (232) Q Consensus 69 ~ 69 (232) . T Consensus 82 ~ 82 (233) T 2v4n_A 82 R 82 (233) T ss_dssp S T ss_pred C T ss_conf 7 No 144 >>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} (A:162-293) Probab=26.98 E-value=37 Score=13.86 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=56.4 Q ss_pred CCCCEEEEECCCCCCCC------HHHHHHHCCCEEEEEEEEEECCCCCC--HHHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 77753897215675620------14689846982567688750468999--88999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH------FEDYLIEHKIPLRVIDCYYSQDIAYP--ETTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~------l~~~L~~~g~~v~~~~vY~~~~~~~~--~~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+.+++.++.+...... +.+.+.+.|..+.....+........ ......++ ..+++++..|-..+..++ T Consensus 15 ~G~r~i~~i~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~ 94 (132) T 3h5o_A 15 RGKRRIGFLGAQLDERVXKRLDGYRAALDAADCRDAGLEWLDPQPSSXQXGADXLDRALAERPDCDALFCCNDDLAIGAL 94 (132) T ss_dssp TTCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHH T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH T ss_conf 59970878640266542200025677776304554310000246236778999999999549998389972645666543 Q ss_pred HHCCHHHC----CEEEEECCH Q ss_conf 71354405----803997188 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSN 199 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~ 199 (232) +.+...+. ++.+++++. T Consensus 95 ~~l~~~g~~vP~di~ii~fd~ 115 (132) T 3h5o_A 95 ARSQQLGIAVPERLAIAGFND 115 (132) T ss_dssp HHHHHTTCCTTTTCEEECSBC T ss_pred HHHHHCCCCCCCCEEEEEECC T ss_conf 468763998898679999898 No 145 >>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} (A:) Probab=26.91 E-value=37 Score=13.86 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=24.6 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 9389858968-86999999998798299942 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P 30 (232) ||||||=-.. -+..++..|.+.|++++..- T Consensus 3 mkiLItGatGfiG~~l~~~L~~~g~~V~~~~ 33 (286) T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQGHEVTGLR 33 (286) T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEEE T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 8869998921999999999997859899997 No 146 >>3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} (A:112-249) Probab=26.85 E-value=37 Score=13.85 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=62.8 Q ss_pred CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHHH Q ss_conf 7775389721567562-------01468984698256768875046899988999862---3783899807899999997 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFFS 183 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~~ 183 (232) .+..+|.++.|..... -+.+.|++++.......+|.....+........++ .++++++..+...+...++ T Consensus 22 ~~~~~i~~i~g~~~~~~~~~R~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~ 101 (138) T 3l6u_A 22 RSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVDSVSGNYDPVTSERVXRQVIDSGIPFDAVYCHNDDIAXGVLE 101 (138) T ss_dssp CSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHH T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHH T ss_conf 88750899848998768999998534445543885300110012107889999986321478845999778189999999 Q ss_pred HCCHHHC-CEEEEEC--CHHHHHHHHHCCCCEEEEC Q ss_conf 1354405-8039971--8899999997699669987 Q gi|255764510|r 184 LPLPAKI-SAAFLCL--SNNIASAIPASYKNVVTVA 216 (232) Q Consensus 184 ~~~~~~~-~~~~~~i--g~~tA~~~~~~g~~~~~va 216 (232) .+...+. ++.++++ .+.+...+ ..|.....|. T Consensus 102 al~~~g~~di~ivg~D~~~~~~~~i-~~g~~~ttV~ 136 (138) T 3l6u_A 102 ALKKAKISGKIVVGIDGNRAILEAV-DXKSXDATVV 136 (138) T ss_dssp HHHHTTCCCCEEEEEECCHHHHHHH-HTTSSCEEEE T ss_pred HHHHCCCCCCEEEEEECCHHHHHHH-HCCCCEEEEE T ss_conf 9997699999799997956999999-8299759995 No 147 >>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:1-108,A:240-290) Probab=26.82 E-value=37 Score=13.85 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=18.0 Q ss_pred HHHHHHHCCCCEEEECCEEEECC--CCCCCCCCCCCCCEEEEECHHHH Q ss_conf 99999987982999421000007--85200164475879998484679 Q gi|255764510|r 15 TQEKIQKMGYIPVMMPLSYFIHD--RESVFLAMQQSYGAIAITSSESL 60 (232) Q Consensus 15 ~~~~L~~~G~~~i~~Pli~i~~~--~~~~~~~~~~~~d~iiftS~~av 60 (232) +...++++|+.++..+..+-.+- ........-...|++|+.+...- T Consensus 30 Ie~aa~~~Gy~lil~~s~~~d~e~q~~~i~~li~~~vDGIIi~~~~~~ 77 (159) T 3clk_A 30 IQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVXGILLLSIALT 77 (159) T ss_dssp HHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-- T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEHHHHH T ss_conf 999999869989999689999999999999998569546752000013 No 148 >>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} (B:1-38) Probab=26.51 E-value=33 Score=14.15 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=17.9 Q ss_pred ECCHHHHH-HHHHHHHHCCCCEEEE Q ss_conf 58968869-9999999879829994 Q gi|255764510|r 6 TRPIKKAL-RTQEKIQKMGYIPVMM 29 (232) Q Consensus 6 tRp~~~a~-~~~~~L~~~G~~~i~~ 29 (232) |||.-|+. -++-.|.+.|+.+... T Consensus 12 TRP~lQGaRLTa~EL~~~gIp~tlI 36 (38) T 1w2w_B 12 TRPYNQGSRLTAYELVYDKIPSTLI 36 (38) T ss_dssp CTTTTHHHHTHHHHHHHHTCCBEEB T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 9812477999999999879987999 No 149 >>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} (A:303-450) Probab=26.48 E-value=38 Score=13.81 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=38.0 Q ss_pred HCCCCCCEEEEECCC----------CCCCCHHHHHHHCCCEEEEEEEEEECCCC-------CCHHHHHHHHCCCCEEEEE Q ss_conf 012777538972156----------75620146898469825676887504689-------9988999862378389980 Q gi|255764510|r 111 VLFTPQKPLIYLGGK----------PRNFHFEDYLIEHKIPLRVIDCYYSQDIA-------YPETTMKNLLQNADAILFY 173 (232) Q Consensus 111 ~~~~~~~~vl~~~g~----------~~~~~l~~~L~~~g~~v~~~~vY~~~~~~-------~~~~~~~~~~~~~d~i~f~ 173 (232) .....+++|.++.-. ...-.+.+.|...|..|..+..|-..... .....+.+++++.|+|++. T Consensus 11 g~~l~~~~V~ilGl~fK~~t~D~R~S~~~~l~~~L~~~G~~V~~~Dp~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ivi~ 90 (148) T 3gg2_A 11 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV 90 (148) T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC T ss_pred HCCCCCCHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCEEEECCHHHHHCCCCEEEEE T ss_conf 20123123544163147741010366047889999974787799999788789998278827838999997069889994 Q ss_pred CHH Q ss_conf 789 Q gi|255764510|r 174 ARS 176 (232) Q Consensus 174 S~~ 176 (232) .+. T Consensus 91 ~~~ 93 (148) T 3gg2_A 91 TEW 93 (148) T ss_dssp SCC T ss_pred ECC T ss_conf 088 No 150 >>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase; HET: 5RP; 2.90A {Thermotoga maritima} (D:) Probab=26.40 E-value=38 Score=13.80 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=48.0 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHH------------HHHHC Q ss_conf 938985896886999999998798299942100000785200164475879998484679998------------86200 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTL------------PANFC 68 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~------------~~~~~ 68 (232) |+|.|-.=-..-..+.+.|++.|++++.++.. .++.++|.||++-....... ..... T Consensus 21 ~~Iav~~~~~~~~~~~~~l~~~G~~~~~~~~~-----------~~l~~~D~iil~GG~~~~~~~~~~~~~~~~~i~~~~~ 89 (208) T 2iss_D 21 MKIGVLGVQGDVREHVEALHKLGVETLIVKLP-----------EQLDMVDGLILPGGESTTMIRILKEMDMDEKLVERIN 89 (208) T ss_dssp CEEEEECSSSCHHHHHHHHHHTTCEEEEECSG-----------GGGGGCSEEEECSSCHHHHHHHHHHTTCHHHHHHHHH T ss_pred CEEEEEECCCCHHHHHHHHHHCCCCEEEECCH-----------HHHHHCCEEEECCCCHHHHHHHHHHCCCCHHHHHHHH T ss_conf 89999967998999999999889989998998-----------9983089899978868988766542011067899986 Q ss_pred CCCCEECCCHHHHHHHHHHCCC Q ss_conf 1363000415899997641012 Q gi|255764510|r 69 RHTPIFAIGEASACLARQKGFT 90 (232) Q Consensus 69 ~~~~~~~vg~~t~~~~~~~~~~ 90 (232) ...|++.+-.+-.-.....+.. T Consensus 90 ~g~PilGiC~G~Q~L~~~~g~~ 111 (208) T 2iss_D 90 NGLPVFATCAGVILLAKRIKNY 111 (208) T ss_dssp TTCCEEEETHHHHHHEEEEC-- T ss_pred CCCEEEEECCCEEEEEEECCCC T ss_conf 5965999636601466633785 No 151 >>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108) Probab=26.37 E-value=38 Score=13.80 Aligned_cols=88 Identities=8% Similarity=-0.036 Sum_probs=54.8 Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCCHHHCCEE Q ss_conf 77753897215675620146898469825676887504689998899986237838998078999999971354405803 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPLPAKISAA 193 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~~~~~~~~ 193 (232) +..++++++.|....--+....++.|+.+ +.+| ..+ +.+.. .-.|..++.|..-.+.+.+.....+.+.. T Consensus 17 ~~~~kilIlG~Gqla~~l~~aa~~lG~~~--~~~d-~~~--~~pa~-----~~ad~~~~~~~~D~~~i~~~a~~~~~D~I 86 (108) T 2dwc_A 17 DSAQKILLLGSGELGKEIAIEAQRLGVEV--VAVD-RYA--NAPAM-----QVAHRSYVGNMMDKDFLWSVVEREKPDAI 86 (108) T ss_dssp TTCCEEEEESCSHHHHHHHHHHHHTTCEE--EEEE-SST--TCHHH-----HHSSEEEESCTTCHHHHHHHHHHHCCSEE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEE--EEEE-CCC--CCCHH-----HHCCEEEECCCCCHHHHHHHHHHCCCCEE T ss_conf 99889999997899999999999879989--9997-989--88577-----74565897899999999999987399999 Q ss_pred EE---ECCHHHHHHHHHCCCC Q ss_conf 99---7188999999976996 Q gi|255764510|r 194 FL---CLSNNIASAIPASYKN 211 (232) Q Consensus 194 ~~---~ig~~tA~~~~~~g~~ 211 (232) .. -+...+++.+++.|.. T Consensus 87 ~~e~e~i~~~~~~~~e~~Gi~ 107 (108) T 2dwc_A 87 IPEIEAINLDALFEFEKDGYF 107 (108) T ss_dssp EECSSCSCHHHHHHHHHTTCC T ss_pred EECCCCCCHHHHHHHHHHCCC T ss_conf 968887578999999861662 No 152 >>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP, hydrolase; 2.05A {Thermus thermophilus HB8} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A (A:) Probab=26.28 E-value=38 Score=13.79 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=26.0 Q ss_pred CEEEEECC----HHHHHHHHHHHHHCCCCEEEECCEE Q ss_conf 93898589----6886999999998798299942100 Q gi|255764510|r 1 MYIVITRP----IKKALRTQEKIQKMGYIPVMMPLSY 33 (232) Q Consensus 1 M~ilitRp----~~~a~~~~~~L~~~G~~~i~~Pli~ 33 (232) ||||||=. .+.-..+++.|.+.|--.+..|.-+ T Consensus 1 M~ILiTNDDGi~a~Gi~~L~~aL~~~g~V~VvAP~~~ 37 (244) T 2e6c_A 1 MRILVTNDDGIYSPGLWALAEAASQFGEVFVAAPDTE 37 (244) T ss_dssp CEEEEECSSCTTCHHHHHHHHHHTTTSEEEEEEECSS T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCC T ss_conf 9599972799897669999999986699899951899 No 153 >>3eyw_A C-terminal domain of glutathione-regulated potassium-efflux system protein KEFC fused...; KTN, RCK, K+ channel, K+ transport, K+ efflux; HET: FMN NAD; 2.40A {Escherichia coli K12} (A:1-123) Probab=26.05 E-value=38 Score=13.76 Aligned_cols=100 Identities=8% Similarity=-0.115 Sum_probs=54.1 Q ss_pred CCEEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEE------------CC-CCCCHHHHHH-HHCCCCEEEEECHHH--HH Q ss_conf 75389721567562014689846982567688750------------46-8999889998-623783899807899--99 Q gi|255764510|r 116 QKPLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYS------------QD-IAYPETTMKN-LLQNADAILFYARSS--VL 179 (232) Q Consensus 116 ~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~------------~~-~~~~~~~~~~-~~~~~d~i~f~S~~~--v~ 179 (232) .++++++.+......+.+.|.+.|+.|.-+.--.. .. .......... .+.+.|.|+++.+.. .. T Consensus 4 ~~~v~IiG~G~~G~~ia~~L~~~G~~V~v~d~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~~~~ad~vi~~~~~~~~~~ 83 (123) T 3eyw_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (123) T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCCCEESCTTCHHHHHHHTTTTCSEEEECCSSHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEECCHHHHH T ss_conf 89899989888999999999968998899989999999999769909995389999998569764899999719889999 Q ss_pred HHHHHCCHHHCC--EEEEECCHHHHHHHHHCCCCEEEE Q ss_conf 999713544058--039971889999999769966998 Q gi|255764510|r 180 YFFSLPLPAKIS--AAFLCLSNNIASAIPASYKNVVTV 215 (232) Q Consensus 180 ~~~~~~~~~~~~--~~~~~ig~~tA~~~~~~g~~~~~v 215 (232) .......+.... +...+-++.-.+.+++.|...++- T Consensus 84 ~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~vi~ 121 (123) T 3eyw_A 84 QLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPER 121 (123) T ss_dssp HHHHHHHHHCTTSEEEEEESSHHHHHHHHHTTCSCCEE T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEEC T ss_conf 99999999789983999976999999999779899989 No 154 >>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A (A:) Probab=25.90 E-value=38 Score=13.74 Aligned_cols=30 Identities=13% Similarity=0.239 Sum_probs=16.3 Q ss_pred HHHHHCCCCEEEEECH-------HHHHHHHHHCCHHH Q ss_conf 9986237838998078-------99999997135440 Q gi|255764510|r 160 MKNLLQNADAILFYAR-------SSVLYFFSLPLPAK 189 (232) Q Consensus 160 ~~~~~~~~d~i~f~S~-------~~v~~~~~~~~~~~ 189 (232) +.+.+...|.|+|.|| ...+.|++.+.... T Consensus 79 ~~~~~~~AD~iV~~sP~y~~~~p~~lK~~iDr~~~~~ 115 (191) T 3k1y_A 79 ITSALSASDGLVVATPVFKASYTGLFKXFFDILDTDA 115 (191) T ss_dssp HHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCTTT T ss_pred HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHCCCCC T ss_conf 9999995898589654202473899999999725422 No 155 >>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} (A:) Probab=25.88 E-value=39 Score=13.74 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=24.4 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 9389858968-86999999998798299942 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P 30 (232) ||||||=... =+..++..|.+.|.+++..= T Consensus 1 MkVLVTGatGfiG~~lv~~Ll~~g~~v~~~~ 31 (338) T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILD 31 (338) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 9799989887899999999997849899997 No 156 >>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129} (A:1-344) Probab=25.84 E-value=39 Score=13.74 Aligned_cols=15 Identities=13% Similarity=0.246 Sum_probs=6.7 Q ss_pred HHHHHHHHHHHCCCC Q ss_conf 869999999987982 Q gi|255764510|r 11 KALRTQEKIQKMGYI 25 (232) Q Consensus 11 ~a~~~~~~L~~~G~~ 25 (232) |+....++..+.|.. T Consensus 18 Qs~~I~eRi~~f~~K 32 (344) T 3bh1_A 18 QSQHIRERREALGGK 32 (344) T ss_dssp HHHHHHHHHHHTTSE T ss_pred HHHHHHHHHHHHCCE T ss_conf 999999999861888 No 157 >>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} (A:1-101,A:231-280) Probab=25.46 E-value=39 Score=13.69 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=33.2 Q ss_pred HHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHH Q ss_conf 99999999879829994210000078520016447587999848467999886 Q gi|255764510|r 13 LRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSESLSTLPA 65 (232) Q Consensus 13 ~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~av~~~~~ 65 (232) ..+...+++.|+.++..+.-.-...........-...|++|+.+...-+.+.. T Consensus 25 ~gI~~aa~~~Gy~vii~~s~~~~~e~~~i~~ll~~~VDGIIi~~~~~~~~L~~ 77 (151) T 3gyb_A 25 QSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSXRPDGIIIAQDIPDFTVPD 77 (151) T ss_dssp HHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESCC------- T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHC T ss_conf 99999999869989999689998999999999971985355125301266641 No 158 >>1jzt_A Hypothetical 27.5 kDa protein in SPX19-GCR2 intergenic region; yeast hypothetical protein, structural genomics, selenomethionine, PSI; 1.94A {Saccharomyces cerevisiae} (A:) Probab=25.25 E-value=37 Score=13.86 Aligned_cols=37 Identities=16% Similarity=-0.052 Sum_probs=24.7 Q ss_pred CCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEEC Q ss_conf 775389721567562----0146898469825676887504 Q gi|255764510|r 115 PQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQ 151 (232) Q Consensus 115 ~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~ 151 (232) ++++|+++||.+.+. .+...|.++|++|.-+.+-... T Consensus 57 ~~~~v~vl~G~GnNGGDgl~~Ar~L~~~G~~V~v~~~~~~~ 97 (246) T 1jzt_A 57 KGKHVFVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSE 97 (246) T ss_dssp HTCEEEEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCT T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 79849999889998477999999999779847999847865 No 159 >>3d3k_A Enhancer of mRNA-decapping protein 3; HEDC3, cytoplasm, phosphoprotein, protein binding; 2.20A {Homo sapiens} (A:) Probab=25.24 E-value=40 Score=13.67 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=27.9 Q ss_pred CCCCEEEEECCCCCCC----CHHHHHHHCCCEEEEEEEEEECCC Q ss_conf 7775389721567562----014689846982567688750468 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF----HFEDYLIEHKIPLRVIDCYYSQDI 153 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~----~l~~~L~~~g~~v~~~~vY~~~~~ 153 (232) ...++|+++||.+.+. .....|..+|++|.-+.++..... T Consensus 83 ~~~~~v~il~G~GnNGGDgl~~Ar~L~~~G~~V~v~~~~~~~~~ 126 (259) T 3d3k_A 83 HQRPTVALLCGPHVKGAQGISCGRHLANHDVQVILFLPNFVKML 126 (259) T ss_dssp -CCCEEEEEECSSHHHHHHHHHHHHHHHTTCEEEEECCBCSSCC T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 89997999989998839999999999978995999956885679 No 160 >>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:1-118,A:302-333) Probab=25.05 E-value=40 Score=13.65 Aligned_cols=97 Identities=9% Similarity=-0.098 Sum_probs=50.3 Q ss_pred EEEEECCCCCCCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHH-HHHHHHHHCCHHHCCEEEEE Q ss_conf 38972156756201468984698256768875046899988999862378389980789-99999971354405803997 Q gi|255764510|r 118 PLIYLGGKPRNFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARS-SVLYFFSLPLPAKISAAFLC 196 (232) Q Consensus 118 ~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~-~v~~~~~~~~~~~~~~~~~~ 196 (232) ++.++.-....++..+.|++.+ .+ +|. .......+.+.+.+++.|+|+.++.. --..+++..+..+. +.+ T Consensus 23 k~~Vlv~~~~~~~~~~~L~~~~-~v----i~~-~~~~~~~~e~~~~l~~~d~Ii~~~~~~i~~e~L~~~p~LK~---I~~ 93 (150) T 3ba1_A 23 AIGVLMMCPMSTYLEQELDKRF-KL----FRY-WTQPAQRDFLALQAESIRAVVGNSNAGADAELIDALPKLEI---VSS 93 (150) T ss_dssp CCEEEECSCCCHHHHHHHHHHS-EE----EEG-GGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHCTTCCE---EEE T ss_pred CCCEEEECCCCHHHHHHHHCCC-CE----EEC-CCCCCCHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCEE---EEE T ss_conf 8518984699989999996676-79----963-78999899999875798799989999979999960855708---997 Q ss_pred C--CH--HHHHHHHHCCCCEEEECCCCCHHH Q ss_conf 1--88--999999976996699879999889 Q gi|255764510|r 197 L--SN--NIASAIPASYKNVVTVACFPKETS 223 (232) Q Consensus 197 i--g~--~tA~~~~~~g~~~~~va~~p~~~~ 223 (232) . |- -=-+++++.|+....++.+.+.|. T Consensus 94 ~g~G~D~IDl~aa~~~GI~V~N~pg~~~~~~ 124 (150) T 3ba1_A 94 FSVGLDKVDLIKCEEKGVRVTNTPDSGTVET 124 (150) T ss_dssp SSSCCTTBCHHHHHHHTCEEECCCSTCSHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 1887553255310135521136898185999 No 161 >>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} (A:115-246) Probab=25.04 E-value=40 Score=13.65 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=55.8 Q ss_pred CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 7775389721567562-------0146898469825676887504689998-8999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+..++.++.+..... -+.+.+.++|..++...++......... ......+ ..+++|+.+|-..+..++ T Consensus 15 ~G~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~ 94 (132) T 3hcw_A 15 QGVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAIL 94 (132) T ss_dssp HCCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH T ss_conf 13223322455543201455568899999874985110114554035666655554320357776422222201333335 Q ss_pred HHCCHHHC----CEEEEECCHH Q ss_conf 71354405----8039971889 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~~ 200 (232) +.+...+. ++.+++++.. T Consensus 95 ~~l~~~g~~iP~di~ii~fd~~ 116 (132) T 3hcw_A 95 SVLYELNIEIPKDVMTATFNDS 116 (132) T ss_dssp HHHHHTTCCTTTTEEEEEECCS T ss_pred HHHHHCCCCCCCCCCCCCCCCH T ss_conf 5442033223221002256887 No 162 >>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri 2a str} (A:1-241) Probab=24.78 E-value=40 Score=13.62 Aligned_cols=74 Identities=9% Similarity=-0.028 Sum_probs=48.2 Q ss_pred CCCCEEEEECCC---CC-----CCCHHHHHHHCCCEEEEEEEEEECCCCCC-------HHHHHHHHCCCCEEEEECHH-- Q ss_conf 777538972156---75-----62014689846982567688750468999-------88999862378389980789-- Q gi|255764510|r 114 TPQKPLIYLGGK---PR-----NFHFEDYLIEHKIPLRVIDCYYSQDIAYP-------ETTMKNLLQNADAILFYARS-- 176 (232) Q Consensus 114 ~~~~~vl~~~g~---~~-----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~-------~~~~~~~~~~~d~i~f~S~~-- 176 (232) ....+++++.|. .+ ...+.+.|.+.|..++.+.+|........ ...+...+...|+|+|.||. T Consensus 56 ~~~~kilii~gS~~~~g~T~~la~~i~~~l~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aD~iv~~sP~y~ 135 (241) T 2fzv_A 56 APPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH 135 (241) T ss_dssp CSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCHHC T ss_conf 99985999959899888799999999999987799699971078999997556787899999999984765389655003 Q ss_pred -----HHHHHHHHCCH Q ss_conf -----99999971354 Q gi|255764510|r 177 -----SVLYFFSLPLP 187 (232) Q Consensus 177 -----~v~~~~~~~~~ 187 (232) .+..|++.+.. T Consensus 136 ~~~~~~lK~~iD~l~~ 151 (241) T 2fzv_A 136 GQITSVMKAQIDHLPL 151 (241) T ss_dssp TEECHHHHHHHHHSCS T ss_pred CCCHHHHHHHHHHCCC T ss_conf 6760999999985175 No 163 >>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} (A:118-235) Probab=24.70 E-value=41 Score=13.61 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=52.6 Q ss_pred CCCCCEEEEECCCC--C----CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHCCCCEEEEECHHHHHHHHHHCC Q ss_conf 27775389721567--5----62014689846982567688750468999889998623783899807899999997135 Q gi|255764510|r 113 FTPQKPLIYLGGKP--R----NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLLQNADAILFYARSSVLYFFSLPL 186 (232) Q Consensus 113 ~~~~~~vl~~~g~~--~----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~~~~d~i~f~S~~~v~~~~~~~~ 186 (232) .+.-++|.++.... . .+.+.+...+.|+.+....+-... +....+....+++|++++.+.+.+..-.+.+. T Consensus 13 ~P~~k~vgvly~~~e~~s~~~~~~l~~~a~~~Gi~l~~~~v~~~~---di~~~~~~~~~~~dai~~~~d~~v~s~~~~i~ 89 (118) T 3lft_A 13 TPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVPSTN---EIASTVTVXTSKVDAIWVPIDNTIASGFPTVV 89 (118) T ss_dssp CTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEESSGG---GHHHHHHHHTTTCSEEEECSCHHHHHTHHHHH T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHH---HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH T ss_conf 878864689669753129999999998666417568750466679---99999983678861999738706888999999 Q ss_pred HHH--CCEEEEECCHHHH Q ss_conf 440--5803997188999 Q gi|255764510|r 187 PAK--ISAAFLCLSNNIA 202 (232) Q Consensus 187 ~~~--~~~~~~~ig~~tA 202 (232) ... .++..+|.++.-. T Consensus 90 ~~a~~~~iPv~~~~~~~v 107 (118) T 3lft_A 90 SSNQSSKKPIYPSATAXV 107 (118) T ss_dssp HHTTTTCCCEEESSHHHH T ss_pred HHHCCCCCCEEEEEHHHH T ss_conf 852024786786313442 No 164 >>1h70_A NG, NG-dimethylarginine dimethylaminohydrolase; DDAH, nitric oxide synthase inhibitor; HET: CIR; 1.8A {Pseudomonas aeruginosa} (A:1-61,A:245-255) Probab=24.55 E-value=41 Score=13.59 Aligned_cols=27 Identities=11% Similarity=0.011 Sum_probs=19.1 Q ss_pred HHHHHHHHHHHCCCCEEEECCEEEECC Q ss_conf 869999999987982999421000007 Q gi|255764510|r 11 KALRTQEKIQKMGYIPVMMPLSYFIHD 37 (232) Q Consensus 11 ~a~~~~~~L~~~G~~~i~~Pli~i~~~ 37 (232) |-..+.+.|++.|++++.+|..+--|. T Consensus 35 QH~~Yv~aLr~lGl~V~eLpa~E~~PD 61 (72) T 1h70_A 35 QHNAYIRALQTCDVDITLLPPDERFPD 61 (72) T ss_dssp HHHHHHHHHTTSSCEEEEECCCTTCTT T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 999999999986999999457777866 No 165 >>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} (A:1-110,A:244-265) Probab=24.50 E-value=37 Score=13.81 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=4.2 Q ss_pred CCCEEEEECH Q ss_conf 7838998078 Q gi|255764510|r 166 NADAILFYAR 175 (232) Q Consensus 166 ~~d~i~f~S~ 175 (232) ++|++++.+. T Consensus 67 ~vDGiIi~~~ 76 (132) T 2rgy_A 67 DCDGVVVISH 76 (132) T ss_dssp TCSEEEECCS T ss_pred CCCEEEEECC T ss_conf 9998985223 No 166 >>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:1-102,A:300-333) Probab=24.14 E-value=42 Score=13.54 Aligned_cols=54 Identities=4% Similarity=-0.154 Sum_probs=35.3 Q ss_pred CEEEEECCHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 938985896886999999998798299942100000785200164475879998484 Q gi|255764510|r 1 MYIVITRPIKKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 1 M~ilitRp~~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) ||+.+.-+.+-.....+.|++.|........-. .........+.++|++++.+. T Consensus 2 mK~~Vl~~~~~~~~~~~~L~~~~~~~~v~~~~~---~~~eel~~~i~~ad~ii~~~~ 55 (136) T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK---LLTPETVALAKGADGVVVYQQ 55 (136) T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSS---CCCTTTGGGGTTCSEEEECCS T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCEEEEECCC---CCCHHHHHHHCCCCEEEEECC T ss_conf 779998258513999999997689979997899---999899998389989999379 No 167 >>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichiisubsp} (A:565-727) Probab=24.14 E-value=42 Score=13.54 Aligned_cols=112 Identities=2% Similarity=-0.213 Sum_probs=61.9 Q ss_pred HHCCCCCCEEEEECCCCC-----CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEECH--HHHH- Q ss_conf 201277753897215675-----6201468984698256768875046899988999862--37838998078--9999- Q gi|255764510|r 110 KVLFTPQKPLIYLGGKPR-----NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYAR--SSVL- 179 (232) Q Consensus 110 ~~~~~~~~~vl~~~g~~~-----~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S~--~~v~- 179 (232) ........+|++.+...- ...+...|+..|+.|..+- ...+.+.+.... .++|.|.+++. .... T Consensus 26 ~~~~~~~~~vl~~~~~~d~h~lg~~~ia~~l~~~G~evi~lg------~~~~~e~~~~~~~~~~~d~V~iS~~~~~~~~~ 99 (163) T 1req_A 26 EQAEGRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGP------LFQTPEETARQAVEADVHVVGVSSLAGGHLTL 99 (163) T ss_dssp HHHHSSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECC------TTBCHHHHHHHHHHTTCSEEEEEECSSCHHHH T ss_pred HHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCC------CCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH T ss_conf 996599966999817842434359999999985896175488------88999999999997699999991787455889 Q ss_pred --HHHHHCCHHH-CCEEEEECCHHHH---HHHHHCCCCEEEECCCCCHHHHHHHH Q ss_conf --9997135440-5803997188999---99997699669987999988999998 Q gi|255764510|r 180 --YFFSLPLPAK-ISAAFLCLSNNIA---SAIPASYKNVVTVACFPKETSLLKLL 228 (232) Q Consensus 180 --~~~~~~~~~~-~~~~~~~ig~~tA---~~~~~~g~~~~~va~~p~~~~ll~al 228 (232) .+.+.+...+ .++.+++-|..+. +.+++.|...+ +.+..+...+++-+ T Consensus 100 ~~~li~~lr~~g~~~~~i~vGG~~~~~~~~~~~~~G~d~~-~~~~~~~~~~~~~l 153 (163) T 1req_A 100 VPALRKELDKLGRPDILITVGGVIPEQDFDELRKDGAVEI-YTPGTVIPESAISL 153 (163) T ss_dssp HHHHHHHHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEE-ECTTCCHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEE-ECCCCCHHHHHHHH T ss_conf 9999999996799885799807788787999997798868-48998099999999 No 168 >>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} (A:111-242) Probab=23.95 E-value=42 Score=13.52 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=56.3 Q ss_pred CCCCEEEEECCCCCCC-------CHHHHHHHCCCEEEEEEEEEECCCCCCHHHH-HHHH---CCCCEEEEECHHHHHHHH Q ss_conf 7775389721567562-------0146898469825676887504689998899-9862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNF-------HFEDYLIEHKIPLRVIDCYYSQDIAYPETTM-KNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~-------~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~-~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+..++.++.+..... -+.+.+.+.+..+....++............ ..++ .+.++++.++...+..+. T Consensus 15 ~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~d~~a~~~~ 94 (132) T 3gv0_A 15 CGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLXQSSDRPDGIVSISGSSTIALV 94 (132) T ss_dssp TTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHH T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 25340368717743322566678889999986311003330343211135778887654303577400113478888778 Q ss_pred HHCCHHHC----CEEEEECCHH Q ss_conf 71354405----8039971889 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~~ 200 (232) +.+...+. ++.+++++.. T Consensus 95 ~~l~~~g~~ip~di~i~~fd~~ 116 (132) T 3gv0_A 95 AGFEAAGVKIGEDVDIVSKQSA 116 (132) T ss_dssp HHHHTTTCCTTTSCEEEEEESS T ss_pred HHHHHCCCCCCCCEEEEEECCH T ss_conf 8876333014542289996783 No 169 >>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} (A:) Probab=23.45 E-value=43 Score=13.46 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=24.4 Q ss_pred HHHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECH Q ss_conf 886999999998798299942100000785200164475879998484 Q gi|255764510|r 10 KKALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSS 57 (232) Q Consensus 10 ~~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~ 57 (232) .-+..+++.|++.|.++...++-+.. ...+.++|.++|-|+ T Consensus 15 ~~A~~ia~~l~~~g~~v~~~~~~~~~-------~~~l~~~d~vi~g~p 55 (137) T 2fz5_A 15 AMANEIEAAVKAAGADVESVRFEDTN-------VDDVASKDVILLGCP 55 (137) T ss_dssp HHHHHHHHHHHHTTCCEEEEETTSCC-------HHHHHTCSEEEEECC T ss_pred HHHHHHHHHHHHCCCCEEECCHHHHH-------HHHHHCCCEEEEEEE T ss_conf 99999999997569811533357777-------876503543899996 No 170 >>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} (A:79-168) Probab=23.17 E-value=43 Score=13.43 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=46.9 Q ss_pred EEEEEEECCCCCCHHHHHHHHC-CCCEEEEECHHHHHHHHHHCCHHHCCEEEEECCHHHHHHHHHCCCCEEEE Q ss_conf 7688750468999889998623-78389980789999999713544058039971889999999769966998 Q gi|255764510|r 144 VIDCYYSQDIAYPETTMKNLLQ-NADAILFYARSSVLYFFSLPLPAKISAAFLCLSNNIASAIPASYKNVVTV 215 (232) Q Consensus 144 ~~~vY~~~~~~~~~~~~~~~~~-~~d~i~f~S~~~v~~~~~~~~~~~~~~~~~~ig~~tA~~~~~~g~~~~~v 215 (232) -++-|.+.. .....+..+++ ++....+.|...++...+.+...+. ..+.-|..+.+.+++.|++.+.+ T Consensus 20 aivgf~~~~--~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~--~vVIG~~~~~~~A~~~Gl~~vli 88 (90) T 2q5c_A 20 ALIAYKHSI--VDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENI--KIVVSGKTVTDEAIKQGLYGETI 88 (90) T ss_dssp EEEEESSCS--SCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTC--CEEEECHHHHHHHHHTTCEEEEC T ss_pred EEEECCCCC--HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEECCHHHHHHHHHCCCCEEEE T ss_conf 999578613--6899999995994599996588999999999998699--79999879999999849968999 No 171 >>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} (A:1-107,A:239-285) Probab=22.99 E-value=44 Score=13.41 Aligned_cols=66 Identities=12% Similarity=0.042 Sum_probs=34.0 Q ss_pred HHHHHHHHCCCCEEEECCEEEECCCC-CCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCCEECCCHH Q ss_conf 99999998798299942100000785-2001644758799984846799988620013630004158 Q gi|255764510|r 14 RTQEKIQKMGYIPVMMPLSYFIHDRE-SVFLAMQQSYGAIAITSSESLSTLPANFCRHTPIFAIGEA 79 (232) Q Consensus 14 ~~~~~L~~~G~~~i~~Pli~i~~~~~-~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~vg~~ 79 (232) .+...+++.|+.++..+.-.-..... -.....-...|++|+.+..--........++.|+..++.. T Consensus 29 gi~~~a~~~Gy~lvI~~~~~d~~~~~~~i~~l~~~~vDGIII~~~~~~~~~~~~l~~~IPvVlid~~ 95 (154) T 3c3k_A 29 GIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNIIGAFPWVQCAEY 95 (154) T ss_dssp HHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHHTTSSEEEESSC T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEEEC T ss_conf 9999999859989999789998999998766540455423321234328999850368878998404 No 172 >>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium LT2} (A:108-243,A:302-316) Probab=22.72 E-value=44 Score=13.37 Aligned_cols=99 Identities=9% Similarity=0.076 Sum_probs=62.5 Q ss_pred CCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCH-HHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 77753897215675620-------146898469825676887504689998-8999862---378389980789999999 Q gi|255764510|r 114 TPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPE-TTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 114 ~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~-~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) .+..+|+++.|...... +.+.|+++|..+.....+......... +.+..++ ..+++|+.++...+.... T Consensus 19 ~g~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~ 98 (151) T 1tjy_A 19 KEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAA 98 (151) T ss_dssp SSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHH T ss_pred CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH T ss_conf 55542000024676420135666677776503553320123302146788899999987328985199978868999999 Q ss_pred HHCCHHH-CCEEEEEC--CHHHHHHHHHCCCCE Q ss_conf 7135440-58039971--889999999769966 Q gi|255764510|r 183 SLPLPAK-ISAAFLCL--SNNIASAIPASYKNV 212 (232) Q Consensus 183 ~~~~~~~-~~~~~~~i--g~~tA~~~~~~g~~~ 212 (232) +.+...+ .++.++++ ++.+.+.+++.-... T Consensus 99 ~al~~~g~~~i~ivgfD~~~~~~~~i~~g~i~~ 131 (151) T 1tjy_A 99 QAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKE 131 (151) T ss_dssp HHHHHTTCCSCEEEEBCCHHHHHHHHHHTSCSE T ss_pred HHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCE T ss_conf 999976999857999857099999998558648 No 173 >>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} (A:) Probab=21.94 E-value=46 Score=13.28 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=26.2 Q ss_pred CCEEEEECHHHHHHHHHHCCHHHC-CEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHH Q ss_conf 838998078999999971354405-80399718899999997699669987999988999 Q gi|255764510|r 167 ADAILFYARSSVLYFFSLPLPAKI-SAAFLCLSNNIASAIPASYKNVVTVACFPKETSLL 225 (232) Q Consensus 167 ~d~i~f~S~~~v~~~~~~~~~~~~-~~~~~~ig~~tA~~~~~~g~~~~~va~~p~~~~ll 225 (232) ...|.++|..+....... ..+.. +.-+..+.+..|..+...|++...+++.+....|. T Consensus 173 g~IV~isS~~~~~~~~~~-~~Y~asKaal~~l~~~lA~el~~~gIrVN~I~PG~i~T~~~ 231 (285) T 2c07_A 173 GRIINISSIVGLTGNVGQ-ANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMT 231 (285) T ss_dssp EEEEEECCTHHHHCCTTC-HHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC--- T ss_pred EEEEEECCHHHCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCHHH T ss_conf 299998776656789997-79999999999999999998535596999983574358023 No 174 >>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} (A:109-239) Probab=21.60 E-value=47 Score=13.24 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=58.0 Q ss_pred CCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEEEEECHHHHHHHH Q ss_conf 277753897215675620-------1468984698256768875046899988999862---378389980789999999 Q gi|255764510|r 113 FTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAILFYARSSVLYFF 182 (232) Q Consensus 113 ~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i~f~S~~~v~~~~ 182 (232) ..+..++.++.+...... +.+.+.++|..+....++................ ...++|+..+...+..+. T Consensus 14 ~~G~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~~a~~~~ 93 (131) T 3clk_A 14 NEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAXKAFGKNTDLTGIIAASDXTAIGIL 93 (131) T ss_dssp TTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCC T ss_conf 23321122347883222014456777777887086532000122210122111333456645667467532454433322 Q ss_pred HHCCHHHC----CEEEEECCHH Q ss_conf 71354405----8039971889 Q gi|255764510|r 183 SLPLPAKI----SAAFLCLSNN 200 (232) Q Consensus 183 ~~~~~~~~----~~~~~~ig~~ 200 (232) ..+...+. ++.++++... T Consensus 94 ~~l~~~g~~iP~di~ii~fd~~ 115 (131) T 3clk_A 94 NQASSFGIEVPKDLSIVSIDGT 115 (131) T ss_dssp HHHHHTTCCTTTTCEEEEEECC T ss_pred CCCCCCCCCCCCCCCCCCCCCH T ss_conf 0114445668742223246735 No 175 >>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthesis, methyltransferase, transferase; 2.3A {Escherichia coli} (A:) Probab=21.54 E-value=47 Score=13.23 Aligned_cols=30 Identities=13% Similarity=0.007 Sum_probs=24.4 Q ss_pred CEEEEECCHH-HHHHHHHHHHHCCCCEEEEC Q ss_conf 9389858968-86999999998798299942 Q gi|255764510|r 1 MYIVITRPIK-KALRTQEKIQKMGYIPVMMP 30 (232) Q Consensus 1 M~ilitRp~~-~a~~~~~~L~~~G~~~i~~P 30 (232) ||||||=-.. =+..++..|.+.|.++...- T Consensus 1 MkVLVtGatGfiG~~lv~~Ll~~g~~v~~~~ 31 (345) T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGL 31 (345) T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEE T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 9799989886899999999997799889999 No 176 >>3l83_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2, protein structure initiative; 1.50A {Methylobacillus flagellatus} (A:) Probab=21.47 E-value=47 Score=13.22 Aligned_cols=82 Identities=10% Similarity=0.017 Sum_probs=50.8 Q ss_pred EEEEECCHH--HHHHHHHHHHHCCCCEEEECCEEEECCCCCCCCCCCCCCCEEEEECHH-HH-------H----HHHHHH Q ss_conf 389858968--869999999987982999421000007852001644758799984846-79-------9----988620 Q gi|255764510|r 2 YIVITRPIK--KALRTQEKIQKMGYIPVMMPLSYFIHDRESVFLAMQQSYGAIAITSSE-SL-------S----TLPANF 67 (232) Q Consensus 2 ~ilitRp~~--~a~~~~~~L~~~G~~~i~~Pli~i~~~~~~~~~~~~~~~d~iiftS~~-av-------~----~~~~~~ 67 (232) ||+|..-.. ....+.+.+++.|.++...|.....+. ...+..||.+|++-.. .+ . .+.... T Consensus 5 ~iliid~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-----~~~~~~~DgiIi~GGp~~~~~~~~~~~~~~~li~~~~ 79 (250) T 3l83_A 5 PVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPL-----PAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDAV 79 (250) T ss_dssp CEEEEECSSSCCCTHHHHHHHHTTCCEEEEEGGGTCCC-----CSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHHH T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCC-----CCCHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 49999678999805999999848987999978999878-----7786459999990999977787866899999999999 Q ss_pred CCCCCEECCCHHHHHHHHHHC Q ss_conf 013630004158999976410 Q gi|255764510|r 68 CRHTPIFAIGEASACLARQKG 88 (232) Q Consensus 68 ~~~~~~~~vg~~t~~~~~~~~ 88 (232) ..+.|++.+--+-.-.....| T Consensus 80 ~~~~PvLGIC~G~Qlla~alG 100 (250) T 3l83_A 80 AQRVPVIGHCLGGQLLAKAMG 100 (250) T ss_dssp HTTCCEEEETHHHHHHHHHTT T ss_pred HCCCCEEEEEHHHHHHHEECC T ss_conf 869988998644314644359 No 177 >>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} (G:) Probab=21.29 E-value=47 Score=13.20 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=30.5 Q ss_pred CCCCCEEEEECHHHH---------HHHHHHH------CCCCCEECCCHHHHHHHHHHCCCCC Q ss_conf 475879998484679---------9988620------0136300041589999764101223 Q gi|255764510|r 46 QQSYGAIAITSSESL---------STLPANF------CRHTPIFAIGEASACLARQKGFTQI 92 (232) Q Consensus 46 ~~~~d~iiftS~~av---------~~~~~~~------~~~~~~~~vg~~t~~~~~~~~~~~~ 92 (232) ....-+|+|||-.|. +.+.... .....++++|......+...+.... T Consensus 55 ~~~~~~ivitSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~~~ 116 (230) T 1fs0_G 55 VKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVV 116 (230) T ss_dssp CSEEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEE T ss_pred CCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCEEE T ss_conf 86289999937986651543999999999987650169627999843410766743287146 No 178 >>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli K12} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* (A:) Probab=21.16 E-value=48 Score=13.18 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=29.7 Q ss_pred EEEEE--CCHHHHH----HHHHHHHHCCCCEEEE-CCEEEE----------CCCCC--CCCCCCCCCCEEEEECH Q ss_conf 38985--8968869----9999999879829994-210000----------07852--00164475879998484 Q gi|255764510|r 2 YIVIT--RPIKKAL----RTQEKIQKMGYIPVMM-PLSYFI----------HDRES--VFLAMQQSYGAIAITSS 57 (232) Q Consensus 2 ~ilit--Rp~~~a~----~~~~~L~~~G~~~i~~-Pli~i~----------~~~~~--~~~~~~~~~d~iiftS~ 57 (232) ||||. =|.+... .+++.+++.|...+.+ .+-+.. +..++ .....+.++|.|||-|| T Consensus 3 kilii~gS~~g~t~~la~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~iI~~~P 77 (198) T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTP 77 (198) T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEE T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCEEEEECC T ss_conf 589999799808999999999638763895699995345571778876125545753246566522445999445 No 179 >>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} (A:1-170,A:305-355) Probab=21.10 E-value=48 Score=13.17 Aligned_cols=18 Identities=6% Similarity=0.069 Sum_probs=9.1 Q ss_pred CCCCEEEEECHHHHHHHH Q ss_conf 378389980789999999 Q gi|255764510|r 165 QNADAILFYARSSVLYFF 182 (232) Q Consensus 165 ~~~d~i~f~S~~~v~~~~ 182 (232) .++|+|++++......+. T Consensus 125 ~~vdGIIi~~~~~~~~~i 142 (221) T 3e3m_A 125 RRPEAMVLSYDGHTEQTI 142 (221) T ss_dssp TCCSEEEEECSCCCHHHH T ss_pred HCCCCCCCCCCCCCHHHH T ss_conf 223322223465413466 No 180 >>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} (A:65-238) Probab=20.93 E-value=48 Score=13.15 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=7.8 Q ss_pred CCCEEEEECH--HHHHHHHHH Q ss_conf 5879998484--679998862 Q gi|255764510|r 48 SYGAIAITSS--ESLSTLPAN 66 (232) Q Consensus 48 ~~d~iiftS~--~av~~~~~~ 66 (232) +.+.+++|+. .|....... T Consensus 3 ~~e~v~~t~g~t~a~~~~~~~ 23 (174) T 2c0r_A 3 GYKVLFIQGGASTQFAMIPMN 23 (174) T ss_dssp SEEEEEESSHHHHHHHHHHHH T ss_pred CCEEEEECCCCCHHHHHHHHC T ss_conf 878999668841899999861 No 181 >>3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} (A:107-242) Probab=20.89 E-value=48 Score=13.15 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=62.3 Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------HHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH---CCCCEE Q ss_conf 789998642201277753897215675620-------1468984698256768875046899988999862---378389 Q gi|255764510|r 101 NLAKIIVEQKVLFTPQKPLIYLGGKPRNFH-------FEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL---QNADAI 170 (232) Q Consensus 101 ~~~~ll~~~~~~~~~~~~vl~~~g~~~~~~-------l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~---~~~d~i 170 (232) ..+..+.+... ..+..++.++.|...... +.+.++++|........+...........+..++ .++++| T Consensus 7 ~a~~~~~~~l~-~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai 85 (136) T 3ksm_A 7 LAARALLATLD-LSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEXLRLLKETPTIDGL 85 (136) T ss_dssp HHHHHHHHHSC-TTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCCEE T ss_pred HHHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 99999998732-27984799953767764077898779999986798642021101022588999988764148876356 Q ss_pred EEECHHHHHHHHHHCCHHHC--CEEEEECC--HHHHHHHHHCCC Q ss_conf 98078999999971354405--80399718--899999997699 Q gi|255764510|r 171 LFYARSSVLYFFSLPLPAKI--SAAFLCLS--NNIASAIPASYK 210 (232) Q Consensus 171 ~f~S~~~v~~~~~~~~~~~~--~~~~~~ig--~~tA~~~~~~g~ 210 (232) +..+...+..+++.+...+. ++.++++. +-+.... ..|. T Consensus 86 ~~~~d~~a~g~~~al~~~g~p~di~v~g~d~~~~~~~~~-~~~~ 128 (136) T 3ksm_A 86 FTPNESTTIGALVAIRQSGXSKQFGFIGFDQTEELEAAX-YAGE 128 (136) T ss_dssp ECCSHHHHHHHHHHHHHTTCTTSSEEEEESCCHHHHHHH-HTTS T ss_pred EECCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHH-HCCC T ss_conf 625719999999999975999992899878989999999-7499 No 182 >>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:1-120,A:306-335) Probab=20.82 E-value=49 Score=13.14 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=3.4 Q ss_pred HHCCCCEEEE Q ss_conf 6237838998 Q gi|255764510|r 163 LLQNADAILF 172 (232) Q Consensus 163 ~~~~~d~i~f 172 (232) .+.+.|+|+. T Consensus 64 ~l~~~d~ii~ 73 (150) T 2g76_A 64 ELQDCEGLIV 73 (150) T ss_dssp HGGGCSEEEE T ss_pred HHCCCCEEEE T ss_conf 8489968998 No 183 >>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm} (A:) Probab=20.22 E-value=50 Score=13.06 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=16.0 Q ss_pred CCCCCCCCEEEEECHH-------HHHHHHHHH Q ss_conf 1644758799984846-------799988620 Q gi|255764510|r 43 LAMQQSYGAIAITSSE-------SLSTLPANF 67 (232) Q Consensus 43 ~~~~~~~d~iiftS~~-------av~~~~~~~ 67 (232) ..++.++|.|||-||. .++.+.... T Consensus 71 ~~~~~~aD~ii~~~P~y~~~~p~~lk~~ld~~ 102 (151) T 3edo_A 71 NIDYNNYDLILIGSPVWSGYPATPIKTLLDQX 102 (151) T ss_dssp CCCGGGCSEEEEEEEEETTEECTHHHHHHHHT T ss_pred HHHHHHCCEEEEECCHHHHCCHHHHHHHHHHC T ss_conf 54297688889955255401369999999955 No 184 >>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold; HET: TAR CNC; 1.60A {Clostridium cochlearium} (A:) Probab=20.21 E-value=50 Score=13.06 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=48.5 Q ss_pred CCCHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHH--CCCCEEEEEC--HHHHHHHHHHCC---HHHC-CEEEEECC- Q ss_conf 6201468984698256768875046899988999862--3783899807--899999997135---4405-80399718- Q gi|255764510|r 128 NFHFEDYLIEHKIPLRVIDCYYSQDIAYPETTMKNLL--QNADAILFYA--RSSVLYFFSLPL---PAKI-SAAFLCLS- 198 (232) Q Consensus 128 ~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~~~--~~~d~i~f~S--~~~v~~~~~~~~---~~~~-~~~~~~ig- 198 (232) ...+...|+.+|+.|..+-.- .| .+.+.... .++|.|.+++ +.....+.+.+. +... ++.+++-| T Consensus 20 ~~~va~~lr~~G~~V~~LG~~--~p----~e~l~~~~~~~~~d~V~lS~~~~~~~~~~~~~~~~l~~~~~~~~~vivGG~ 93 (137) T 1ccw_A 20 NKILDHAFTNAGFNVVNIGVL--SP----QELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGN 93 (137) T ss_dssp HHHHHHHHHHTTCEEEEEEEE--EC----HHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEES T ss_pred HHHHHHHHHHCCCEEEECCCC--CC----HHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 999999999789867722345--69----999999998449877887511442147799999999872347987999368 Q ss_pred --------HHHHHHHHHCCCCEEEECCCCCHHHH Q ss_conf --------89999999769966998799998899 Q gi|255764510|r 199 --------NNIASAIPASYKNVVTVACFPKETSL 224 (232) Q Consensus 199 --------~~tA~~~~~~g~~~~~va~~p~~~~l 224 (232) +..++.+...|...+.-+..+-.+.+ T Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~ 127 (137) T 1ccw_A 94 IVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGI 127 (137) T ss_dssp CSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHH T ss_pred CCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHH T ss_conf 6777657087899999749888979989999999 Done!