HHsearch alignment for GI: 255764511 and conserved domain: PRK11188
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=96.40 E-value=0.097 Score=31.89 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=49.8
Q ss_pred HHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HH
Q ss_conf 986886608-388888998376882889999974---89099980998999999998521488527711327889---87
Q gi|255764511|r 25 LEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QD 97 (341)
Q Consensus 25 l~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~ 97 (341)
T Consensus 39 L~EId~K~~l~~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~---------pi-~gv~~i~gDi~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------PI-VGVDFLQGDFRDELVLKA 108 (209)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC---------CC-CCCEEECCCCCCHHHHHH
T ss_conf 99999885645789989980689975789999973999739998653045---------37-896764034458899999
Q ss_pred HH---HHCCCCEEEEE
Q ss_conf 65---31233247862
Q gi|255764511|r 98 YV---PDKGVDGVVFD 110 (341)
Q Consensus 98 ~l---~~~~vdgIl~D 110 (341)
T Consensus 109 i~~~~~~~~~DvVlSD 124 (209)
T PRK11188 109 LLERVGDSKVDVVMSD 124 (209)
T ss_pred HHHHHCCCCCCEEECC
T ss_conf 9998589873089666