HHsearch alignment for GI: 255764511 and conserved domain: PRK11188

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional.
Probab=96.40  E-value=0.097  Score=31.89  Aligned_cols=76  Identities=25%  Similarity=0.327  Sum_probs=49.8

Q ss_pred             HHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HH
Q ss_conf             986886608-388888998376882889999974---89099980998999999998521488527711327889---87
Q gi|255764511|r   25 LEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QD   97 (341)
Q Consensus        25 l~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~   97 (341)
T Consensus        39 L~EId~K~~l~~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~---------pi-~gv~~i~gDi~~~~~~~~  108 (209)
T PRK11188         39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------PI-VGVDFLQGDFRDELVLKA  108 (209)
T ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC---------CC-CCCEEECCCCCCHHHHHH
T ss_conf             99999885645789989980689975789999973999739998653045---------37-896764034458899999


Q ss_pred             HH---HHCCCCEEEEE
Q ss_conf             65---31233247862
Q gi|255764511|r   98 YV---PDKGVDGVVFD  110 (341)
Q Consensus        98 ~l---~~~~vdgIl~D  110 (341)
T Consensus       109 i~~~~~~~~~DvVlSD  124 (209)
T PRK11188        109 LLERVGDSKVDVVMSD  124 (209)
T ss_pred             HHHHHCCCCCCEEECC
T ss_conf             9998589873089666