HHsearch alignment for GI: 255764511 and conserved domain: TIGR00406

>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=95.20  E-value=0.065  Score=33.03  Aligned_cols=99  Identities=22%  Similarity=0.306  Sum_probs=64.9

Q ss_pred             CCHHHCCCCCCCC-CCHHHHHHHHHCCCCC--CEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf             2011011607833-4009868866083888--8899837688288999997489-0999809989999999985214885
Q gi|255764511|r    9 MSSAIHHTIGDHV-PVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQ   84 (341)
Q Consensus         9 m~~~~~~~~~~H~-PVll~Evl~~l~~~~~--g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r   84 (341)
T Consensus       167 lDPGlAFGTGtH~TT~LCLe~L~~~d-~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~l--N~  243 (330)
T TIGR00406       167 LDPGLAFGTGTHPTTSLCLELLEDLD-LKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL--NQ  243 (330)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHH--CC
T ss_conf             56764568897457899999874014-7776654787126717899999975123112213772899999976874--58


Q ss_pred             EEEECCCHHH-----HHHHHHHCCCCEEEEEC
Q ss_conf             2771132788-----98765312332478622
Q gi|255764511|r   85 FSLFQATFSQ-----LQDYVPDKGVDGVVFDL  111 (341)
Q Consensus        85 ~~~~~~~F~~-----i~~~l~~~~vdgIl~DL  111 (341)
T Consensus       244 v~~~~~~~~~~~vPe~~~-~~e~~~DViVANi  274 (330)
T TIGR00406       244 VSDRLQVKLENSVPELEQ-PIEGKADVIVANI  274 (330)
T ss_pred             CCHHHHHHHCCCCCCCCC-CCCCCCCEEEECC
T ss_conf             864576432057875345-3225667578800