Query gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 341
No_of_seqs 132 out of 2545
Neff 5.3
Searched_HMMs 39220
Date Mon May 30 04:49:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 255764511.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00006 TIGR00006 S-adenosyl 100.0 0 0 844.7 24.8 299 19-317 7-323 (323)
2 pfam01795 Methyltransf_5 MraW 100.0 0 0 836.1 29.7 299 19-317 3-310 (310)
3 PRK00050 mraW S-adenosyl-methy 100.0 0 0 835.9 29.8 299 18-317 5-309 (309)
4 COG0275 Predicted S-adenosylme 100.0 0 0 824.6 24.6 301 18-319 5-314 (314)
5 KOG2782 consensus 100.0 0 0 513.1 9.1 256 11-266 18-285 (303)
6 pfam06962 rRNA_methylase Putat 98.4 5.6E-07 1.4E-11 65.7 5.6 111 60-270 1-118 (140)
7 pfam09445 Methyltransf_15 RNA 98.4 7.9E-06 2E-10 58.3 10.6 129 38-197 2-136 (165)
8 PRK00216 ubiE ubiquinone/menaq 98.3 1.7E-05 4.3E-10 56.2 11.3 180 6-199 24-217 (239)
9 PRK08317 hypothetical protein; 98.1 2.7E-05 6.9E-10 54.9 8.2 98 25-126 8-108 (241)
10 cd02440 AdoMet_MTases S-adenos 97.8 0.00042 1.1E-08 47.2 10.2 74 40-114 2-77 (107)
11 KOG2730 consensus 97.7 5.3E-05 1.3E-09 53.0 4.8 65 36-100 94-160 (263)
12 pfam01135 PCMT Protein-L-isoas 97.7 0.00037 9.5E-09 47.5 8.6 93 20-115 57-154 (205)
13 PRK10901 16S rRNA methyltransf 97.6 0.00049 1.2E-08 46.8 8.7 42 224-266 347-393 (428)
14 PRK00312 pcm protein-L-isoaspa 97.6 0.00057 1.4E-08 46.3 8.6 93 21-116 63-157 (213)
15 PRK00377 cbiT cobalt-precorrin 97.6 0.00084 2.1E-08 45.2 9.4 88 28-118 32-124 (198)
16 PRK07402 precorrin-6B methylas 97.5 0.0013 3.2E-08 44.1 9.7 81 28-109 32-115 (196)
17 COG2242 CobL Precorrin-6B meth 97.5 0.0013 3.2E-08 44.1 9.4 91 26-118 24-117 (187)
18 PRK13942 protein-L-isoaspartat 97.5 0.0008 2.1E-08 45.3 8.3 93 20-115 60-157 (214)
19 pfam01189 Nol1_Nop2_Fmu NOL1/N 97.4 0.0011 2.9E-08 44.4 8.0 87 29-115 77-167 (277)
20 pfam08704 GCD14 tRNA methyltra 97.4 0.0014 3.6E-08 43.8 8.3 104 21-125 87-197 (309)
21 PRK05134 3-demethylubiquinone- 97.4 0.0019 4.8E-08 43.0 8.8 75 21-95 33-107 (233)
22 pfam02475 Met_10 Met-10+ like- 97.3 0.0043 1.1E-07 40.6 10.2 99 22-123 85-189 (199)
23 pfam05958 tRNA_U5-meth_tr tRNA 97.3 0.0046 1.2E-07 40.4 9.9 77 20-97 182-259 (353)
24 pfam01209 Ubie_methyltran ubiE 97.3 0.00082 2.1E-08 45.3 6.0 180 5-198 19-211 (233)
25 PRK13944 protein-L-isoaspartat 97.3 0.0023 6E-08 42.3 8.3 93 21-116 57-155 (205)
26 COG2265 TrmA SAM-dependent met 97.3 0.0033 8.3E-08 41.4 9.0 97 15-111 272-370 (432)
27 PRK05031 tRNA (uracil-5-)-meth 97.2 0.0052 1.3E-07 40.1 9.9 75 22-97 194-269 (363)
28 PTZ00098 phosphoethanolamine N 97.2 0.0023 5.8E-08 42.4 7.9 82 24-108 40-122 (263)
29 COG2519 GCD14 tRNA(1-methylade 97.2 0.0025 6.4E-08 42.2 8.0 96 25-123 83-183 (256)
30 PRK08287 cobalt-precorrin-6Y C 97.2 0.0031 7.9E-08 41.6 8.4 65 28-92 22-89 (186)
31 COG2226 UbiE Methylase involve 97.1 0.0046 1.2E-07 40.5 8.9 112 7-125 25-139 (238)
32 PRK11036 putative metallothion 97.1 0.0073 1.9E-07 39.2 9.8 81 27-109 36-118 (256)
33 pfam01170 UPF0020 Putative RNA 97.1 0.0035 9E-08 41.2 7.8 87 23-111 15-105 (171)
34 KOG2915 consensus 97.0 0.0036 9.2E-08 41.1 7.5 89 24-112 93-186 (314)
35 PRK07580 Mg-protoporphyrin IX 97.0 0.0036 9.2E-08 41.1 7.4 103 23-165 47-154 (230)
36 COG0144 Sun tRNA and rRNA cyto 97.0 0.0055 1.4E-07 39.9 8.3 87 30-116 150-242 (355)
37 smart00650 rADc Ribosomal RNA 96.9 0.0063 1.6E-07 39.6 8.0 71 25-96 2-72 (169)
38 PRK11873 arsM arsenite S-adeno 96.7 0.012 3E-07 37.8 7.6 89 33-125 70-162 (258)
39 pfam00398 RrnaAD Ribosomal RNA 96.6 0.014 3.7E-07 37.3 7.9 76 20-96 14-89 (258)
40 PRK01683 trans-aconitate 2-met 96.6 0.016 4.2E-07 36.9 8.1 110 19-138 14-131 (252)
41 pfam05175 MTS Methyltransferas 96.6 0.013 3.2E-07 37.6 7.4 80 29-111 24-106 (170)
42 PRK13943 protein-L-isoaspartat 96.5 0.024 6.2E-07 35.8 8.3 93 20-115 59-156 (317)
43 PRK11188 rrmJ 23S rRNA methylt 96.4 0.097 2.5E-06 31.9 13.5 76 25-110 39-124 (209)
44 PRK11933 yebU rRNA (cytosine-C 96.4 0.068 1.7E-06 32.9 10.0 85 31-116 108-196 (471)
45 COG2518 Pcm Protein-L-isoaspar 96.4 0.035 8.8E-07 34.8 8.5 104 20-126 56-167 (209)
46 TIGR02469 CbiT precorrin-6Y C5 96.4 0.029 7.3E-07 35.3 8.0 95 24-120 7-114 (135)
47 TIGR03534 RF_mod_HemK protein- 96.3 0.04 1E-06 34.4 8.6 155 23-265 75-232 (251)
48 COG0030 KsgA Dimethyladenosine 96.1 0.061 1.6E-06 33.2 8.8 76 20-96 14-89 (259)
49 TIGR03533 L3_gln_methyl protei 96.1 0.075 1.9E-06 32.6 9.2 151 24-264 108-264 (284)
50 COG2890 HemK Methylase of poly 96.1 0.071 1.8E-06 32.8 8.8 101 24-139 99-203 (280)
51 PRK11207 tellurite resistance 96.0 0.032 8.3E-07 35.0 6.9 79 27-108 21-100 (198)
52 PRK09328 N5-glutamine S-adenos 96.0 0.079 2E-06 32.5 8.7 153 23-265 97-253 (277)
53 pfam01596 Methyltransf_3 O-met 95.9 0.11 2.7E-06 31.6 9.3 99 16-114 18-131 (204)
54 TIGR00479 rumA 23S rRNA (uraci 95.9 0.029 7.4E-07 35.3 6.3 90 21-110 279-371 (434)
55 PRK01544 bifunctional N5-gluta 95.9 0.079 2E-06 32.5 8.5 88 22-113 100-213 (503)
56 PRK00274 ksgA dimethyladenosin 95.9 0.093 2.4E-06 32.0 8.8 89 20-114 23-113 (267)
57 COG2520 Predicted methyltransf 95.9 0.079 2E-06 32.5 8.4 105 22-128 173-281 (341)
58 PRK11805 N5-glutamine S-adenos 95.9 0.11 2.7E-06 31.6 9.0 142 24-252 120-266 (307)
59 COG4122 Predicted O-methyltran 95.8 0.12 3.2E-06 31.2 9.2 107 20-129 39-157 (219)
60 pfam02353 CMAS Cyclopropane-fa 95.8 0.094 2.4E-06 32.0 8.6 72 24-95 50-124 (273)
61 pfam08241 Methyltransf_11 Meth 95.8 0.015 3.8E-07 37.2 4.5 77 41-123 1-78 (95)
62 pfam04445 DUF548 Protein of un 95.8 0.078 2E-06 32.5 8.1 82 32-114 69-162 (235)
63 COG1041 Predicted DNA modifica 95.8 0.032 8.3E-07 35.0 6.1 87 22-110 183-271 (347)
64 COG0742 N6-adenine-specific me 95.8 0.18 4.6E-06 30.2 9.9 94 25-118 29-129 (187)
65 PRK10258 biotin biosynthesis p 95.8 0.041 1E-06 34.3 6.5 93 24-125 30-123 (251)
66 PRK11524 putative methyltransf 95.8 0.058 1.5E-06 33.3 7.3 29 85-113 9-37 (284)
67 COG2263 Predicted RNA methylas 95.8 0.084 2.1E-06 32.3 8.1 64 33-96 42-106 (198)
68 KOG0820 consensus 95.7 0.079 2E-06 32.5 7.6 98 15-116 34-138 (315)
69 pfam03848 TehB Tellurite resis 95.6 0.04 1E-06 34.4 6.0 63 26-88 20-82 (192)
70 PTZ00338 dimethyladenosine tra 95.6 0.091 2.3E-06 32.1 7.8 90 20-113 22-113 (296)
71 PRK13699 putative methylase; P 95.6 0.095 2.4E-06 32.0 7.9 12 100-111 17-28 (227)
72 TIGR00563 rsmB ribosomal RNA s 95.6 0.048 1.2E-06 33.9 6.2 110 28-147 263-383 (487)
73 smart00828 PKS_MT Methyltransf 95.5 0.035 8.9E-07 34.8 5.4 83 39-126 2-88 (224)
74 COG4123 Predicted O-methyltran 95.4 0.12 3E-06 31.4 7.9 87 20-109 31-121 (248)
75 PRK09329 N5-glutamine S-adenos 95.4 0.12 2.9E-06 31.4 7.8 155 23-265 95-252 (285)
76 COG2264 PrmA Ribosomal protein 95.4 0.1 2.7E-06 31.7 7.5 93 16-111 142-237 (300)
77 pfam08242 Methyltransf_12 Meth 95.3 0.036 9.3E-07 34.6 5.0 82 41-125 1-85 (98)
78 COG0220 Predicted S-adenosylme 95.3 0.28 7.2E-06 28.9 10.1 104 8-111 13-127 (227)
79 TIGR00406 prmA ribosomal prote 95.2 0.065 1.7E-06 33.0 5.9 99 9-111 167-274 (330)
80 PRK10742 putative methyltransf 95.1 0.15 3.7E-06 30.8 7.5 74 39-113 91-174 (250)
81 pfam01564 Spermine_synth Sperm 94.9 0.23 6E-06 29.4 8.0 88 15-112 62-157 (240)
82 COG0421 SpeE Spermidine syntha 94.7 0.28 7E-06 29.0 8.1 78 33-112 74-158 (282)
83 pfam03291 Pox_MCEL mRNA cappin 94.6 0.13 3.4E-06 31.0 6.2 62 21-82 47-110 (327)
84 PRK00517 prmA ribosomal protei 94.4 0.49 1.2E-05 27.4 9.2 46 35-80 161-207 (298)
85 COG2230 Cfa Cyclopropane fatty 94.2 0.46 1.2E-05 27.5 8.3 73 24-96 60-135 (283)
86 TIGR00755 ksgA dimethyladenosi 94.1 0.3 7.7E-06 28.7 7.2 94 20-114 13-113 (277)
87 COG2521 Predicted archaeal met 93.9 0.08 2E-06 32.4 3.9 90 19-110 111-212 (287)
88 PRK09489 rsmC 16S ribosomal RN 93.8 0.43 1.1E-05 27.7 7.5 42 224-266 278-321 (342)
89 PRK06202 hypothetical protein; 93.5 0.44 1.1E-05 27.7 7.1 57 24-80 47-111 (233)
90 PRK04457 spermidine synthase; 93.5 0.57 1.5E-05 26.9 7.7 102 7-111 35-144 (262)
91 pfam01209 Ubie_methyltran ubiE 93.5 0.12 3E-06 31.3 4.2 49 214-267 123-171 (233)
92 PRK00811 spermidine synthase; 93.4 0.73 1.9E-05 26.2 8.5 78 32-111 75-160 (283)
93 pfam07021 MetW Methionine bios 93.4 0.34 8.8E-06 28.3 6.4 70 34-109 11-81 (193)
94 pfam06325 PrmA Ribosomal prote 93.2 0.78 2E-05 26.0 8.6 31 220-250 229-259 (294)
95 PRK11088 rrmA 23S rRNA methylt 92.8 0.78 2E-05 26.1 7.5 73 7-79 52-133 (272)
96 KOG3420 consensus 92.7 0.21 5.3E-06 29.8 4.4 110 16-140 27-138 (185)
97 PRK10909 rsmD 16S rRNA m(2)G96 92.5 0.98 2.5E-05 25.4 8.5 101 21-124 35-141 (198)
98 KOG2360 consensus 92.4 0.24 6.1E-06 29.3 4.5 98 30-140 207-308 (413)
99 pfam02384 N6_Mtase N-6 DNA Met 92.0 0.58 1.5E-05 26.9 6.1 54 27-80 37-99 (312)
100 PRK00121 trmB tRNA (guanine-N( 91.9 1.1 2.9E-05 25.0 8.6 76 35-110 53-132 (229)
101 pfam02390 Methyltransf_4 Putat 91.9 1.2 2.9E-05 25.0 8.9 86 22-111 10-100 (199)
102 pfam01728 FtsJ FtsJ-like methy 91.8 1.2 3E-05 24.9 8.3 44 25-68 9-55 (176)
103 pfam03602 Cons_hypoth95 Conser 91.8 1.2 3E-05 24.9 8.9 94 24-117 27-127 (181)
104 TIGR00426 TIGR00426 competence 91.8 0.13 3.3E-06 31.1 2.5 43 147-194 10-53 (70)
105 KOG2904 consensus 91.7 1.2 3E-05 24.9 7.3 161 25-196 134-314 (328)
106 TIGR02021 BchM-ChlM magnesium 90.9 1.2 3.2E-05 24.7 6.8 104 22-164 37-146 (224)
107 TIGR00477 tehB tellurite resis 90.9 1.1 2.8E-05 25.1 6.5 81 26-109 63-144 (239)
108 pfam06962 rRNA_methylase Putat 90.8 0.51 1.3E-05 27.2 4.7 12 69-80 73-84 (140)
109 COG2226 UbiE Methylase involve 90.5 0.35 8.9E-06 28.3 3.7 86 216-306 128-214 (238)
110 COG2227 UbiG 2-polyprenyl-3-me 90.5 1.6 4E-05 24.1 7.9 47 35-81 58-104 (243)
111 PRK12335 tellurite resistance 90.3 0.8 2E-05 26.0 5.4 56 26-81 112-167 (289)
112 KOG2899 consensus 90.2 0.44 1.1E-05 27.6 4.0 144 36-248 58-208 (288)
113 PRK03612 spermidine synthase; 90.1 1.6 4.1E-05 24.0 6.8 77 33-112 291-378 (516)
114 PRK08317 hypothetical protein; 89.6 0.64 1.6E-05 26.6 4.4 41 225-265 100-147 (241)
115 PRK12826 3-ketoacyl-(acyl-carr 89.5 1.8 4.5E-05 23.8 6.6 72 44-115 12-95 (253)
116 PRK07832 short chain dehydroge 89.4 1.9 4.9E-05 23.5 7.3 147 44-221 6-169 (272)
117 PRK06139 short chain dehydroge 89.1 0.94 2.4E-05 25.5 5.0 64 51-114 23-94 (324)
118 COG4106 Tam Trans-aconitate me 88.6 1.7 4.4E-05 23.8 6.1 56 25-80 19-76 (257)
119 TIGR01096 3A0103s03R lysine-ar 88.5 0.71 1.8E-05 26.3 4.0 100 56-159 44-151 (333)
120 TIGR00095 TIGR00095 putative m 88.1 2.4 6E-05 22.9 7.1 79 36-114 55-143 (210)
121 TIGR02752 MenG_heptapren 2-hep 87.6 1.5 3.7E-05 24.3 5.2 182 4-199 16-210 (231)
122 PRK11705 cyclopropane fatty ac 87.4 2.6 6.6E-05 22.7 8.8 104 146-250 146-268 (383)
123 KOG1709 consensus 87.3 2.6 6.6E-05 22.7 7.8 79 34-112 99-178 (271)
124 TIGR00438 rrmJ ribosomal RNA l 87.0 2.5 6.4E-05 22.8 6.1 68 34-110 30-109 (192)
125 KOG1541 consensus 86.7 1.7 4.2E-05 23.9 5.1 53 24-77 36-91 (270)
126 COG1555 ComEA DNA uptake prote 86.5 0.44 1.1E-05 27.7 2.0 42 147-194 90-132 (149)
127 KOG1975 consensus 85.9 0.81 2.1E-05 25.9 3.1 103 22-137 108-220 (389)
128 KOG1540 consensus 85.7 3.2 8E-05 22.1 7.5 181 6-199 73-273 (296)
129 PRK07109 short chain dehydroge 84.8 3.5 8.8E-05 21.9 8.7 138 32-194 3-148 (338)
130 KOG1122 consensus 81.4 4 0.0001 21.5 5.1 33 229-262 351-386 (460)
131 COG1023 Gnd Predicted 6-phosph 80.1 5.2 0.00013 20.7 6.6 77 53-132 18-138 (300)
132 PRK05653 fabG 3-ketoacyl-(acyl 80.0 5.3 0.00013 20.7 7.3 71 44-114 11-93 (246)
133 KOG1663 consensus 80.0 5.3 0.00013 20.7 8.3 72 57-129 97-174 (237)
134 PRK00536 speE spermidine synth 79.4 4.9 0.00012 20.9 5.0 86 15-110 59-146 (262)
135 TIGR00452 TIGR00452 methyltran 79.4 2.6 6.7E-05 22.6 3.6 87 26-116 111-202 (316)
136 PRK08217 fabG 3-ketoacyl-(acyl 79.2 5.6 0.00014 20.5 6.8 71 44-114 11-93 (253)
137 COG2813 RsmC 16S RNA G1207 met 78.9 5.7 0.00014 20.5 7.6 37 228-265 245-283 (300)
138 COG0116 Predicted N6-adenine-s 78.8 5.7 0.00015 20.5 7.6 44 216-259 310-354 (381)
139 TIGR00446 nop2p NOL1/NOP2/sun 76.9 6.5 0.00017 20.1 5.2 84 32-115 71-162 (284)
140 COG0293 FtsJ 23S rRNA methylas 76.7 6.6 0.00017 20.1 7.4 59 26-94 34-96 (205)
141 pfam00891 Methyltransf_2 O-met 76.3 6.7 0.00017 20.0 6.0 53 34-92 99-153 (239)
142 cd01478 Sec23-like Sec23-like: 76.2 3.1 7.8E-05 22.2 3.2 16 61-76 7-24 (267)
143 TIGR01177 TIGR01177 conserved 76.0 2.3 5.8E-05 23.0 2.5 94 20-113 187-286 (358)
144 TIGR00676 fadh2 5,10-methylene 75.5 6.9 0.00017 19.9 4.9 102 24-127 16-127 (302)
145 TIGR03206 benzo_BadH 2-hydroxy 75.5 7 0.00018 19.9 6.5 71 44-114 9-91 (250)
146 pfam10672 Methyltrans_SAM S-ad 74.2 7.6 0.00019 19.7 8.6 27 227-253 216-242 (286)
147 pfam11599 AviRa RRNA methyltra 74.0 5.2 0.00013 20.7 3.9 61 20-80 30-99 (249)
148 pfam08003 Methyltransf_9 Prote 74.0 6.8 0.00017 20.0 4.5 83 28-114 107-192 (315)
149 pfam05401 NodS Nodulation prot 73.5 4.4 0.00011 21.2 3.5 61 45-109 52-112 (201)
150 TIGR01934 MenG_MenH_UbiE ubiqu 73.4 7.9 0.0002 19.5 6.2 179 6-198 12-220 (242)
151 PRK07677 short chain dehydroge 72.8 8.2 0.00021 19.4 7.4 71 44-114 9-91 (254)
152 PRK09072 short chain dehydroge 72.5 8.3 0.00021 19.4 7.5 152 43-221 10-169 (262)
153 PRK06181 short chain dehydroge 71.4 8.8 0.00022 19.2 6.7 71 44-114 7-89 (263)
154 KOG1209 consensus 71.3 8.5 0.00022 19.3 4.5 148 39-220 11-169 (289)
155 PRK11783 rlmL 23S rRNA m(2)G24 71.1 9 0.00023 19.2 4.8 39 59-97 261-301 (716)
156 COG1092 Predicted SAM-dependen 71.1 9 0.00023 19.2 8.6 124 121-252 183-339 (393)
157 KOG1270 consensus 70.9 9 0.00023 19.2 5.7 64 15-78 61-131 (282)
158 PRK05855 short chain dehydroge 70.5 6.6 0.00017 20.1 3.8 153 38-221 315-483 (582)
159 TIGR00478 tly hemolysin A; Int 70.1 7 0.00018 19.9 3.9 87 25-115 65-158 (240)
160 PRK05867 short chain dehydroge 69.6 9.6 0.00024 19.0 6.9 72 44-115 15-98 (253)
161 COG1189 Predicted rRNA methyla 68.6 10 0.00026 18.9 6.4 88 25-116 67-157 (245)
162 KOG3339 consensus 68.5 7.1 0.00018 19.8 3.6 34 43-76 43-85 (211)
163 PRK01581 speE spermidine synth 68.1 10 0.00026 18.8 6.3 76 34-112 138-224 (363)
164 TIGR00080 pimt protein-L-isoas 67.6 11 0.00027 18.7 7.0 70 21-91 65-146 (228)
165 TIGR01179 galE UDP-glucose 4-e 67.6 8.3 0.00021 19.4 3.8 210 48-269 12-287 (341)
166 PRK11917 bifunctional adhesin/ 66.9 11 0.00028 18.6 4.7 88 36-132 36-124 (259)
167 PRK12429 3-hydroxybutyrate deh 66.6 11 0.00028 18.6 7.0 64 51-114 21-92 (258)
168 KOG0874 consensus 65.4 6.3 0.00016 20.2 2.9 29 225-253 180-208 (287)
169 TIGR00740 TIGR00740 methyltran 65.3 9.4 0.00024 19.1 3.7 61 36-96 61-127 (247)
170 PRK06113 7-alpha-hydroxysteroi 65.1 12 0.0003 18.4 5.9 70 44-113 17-98 (255)
171 PRK08213 gluconate 5-dehydroge 64.8 12 0.0003 18.4 8.7 85 28-114 4-100 (259)
172 PRK12825 fabG 3-ketoacyl-(acyl 63.8 12 0.00032 18.3 6.7 71 44-114 13-96 (250)
173 PRK05785 hypothetical protein; 63.3 13 0.00032 18.2 10.9 170 7-198 22-202 (225)
174 PRK08267 short chain dehydroge 62.4 13 0.00034 18.1 5.6 37 51-89 18-54 (258)
175 PRK07097 gluconate 5-dehydroge 62.3 13 0.00034 18.1 7.0 72 44-115 16-99 (265)
176 cd00315 Cyt_C5_DNA_methylase C 60.2 14 0.00037 17.9 5.9 66 39-109 2-68 (275)
177 TIGR00255 TIGR00255 conserved 59.9 6 0.00015 20.3 1.9 142 104-246 80-245 (293)
178 pfam08123 DOT1 Histone methyla 59.7 15 0.00038 17.8 7.2 82 14-95 20-113 (205)
179 PRK05786 fabG 3-ketoacyl-(acyl 58.4 15 0.00039 17.7 6.6 62 51-113 22-91 (238)
180 pfam02737 3HCDH_N 3-hydroxyacy 57.0 14 0.00036 17.9 3.4 37 44-81 9-45 (180)
181 pfam06859 Bin3 Bicoid-interact 56.7 9.8 0.00025 18.9 2.6 29 219-247 14-42 (110)
182 PRK07666 fabG 3-ketoacyl-(acyl 56.5 17 0.00042 17.5 6.7 64 51-114 23-94 (238)
183 KOG1661 consensus 56.0 17 0.00043 17.4 4.7 61 21-81 65-131 (237)
184 PRK06346 consensus 55.6 17 0.00044 17.4 7.1 72 43-114 10-93 (251)
185 TIGR02149 glgA_Coryne glycogen 54.5 6.8 0.00017 20.0 1.5 127 60-194 63-215 (416)
186 PRK07454 short chain dehydroge 54.4 18 0.00046 17.2 6.7 64 51-114 23-94 (241)
187 PRK09432 metF 5,10-methylenete 54.2 18 0.00046 17.2 5.1 28 24-52 40-67 (296)
188 PRK05866 short chain dehydroge 54.1 18 0.00046 17.2 6.8 72 43-114 45-128 (290)
189 KOG1986 consensus 53.5 19 0.00047 17.2 3.6 47 126-179 469-516 (745)
190 KOG1499 consensus 53.3 19 0.00048 17.1 5.7 73 35-110 59-134 (346)
191 PRK08340 glucose-1-dehydrogena 53.0 19 0.00048 17.1 6.6 69 44-113 6-86 (259)
192 COG1561 Uncharacterized stress 52.9 11 0.00028 18.6 2.4 48 212-264 208-255 (290)
193 KOG1271 consensus 52.9 18 0.00045 17.3 3.4 95 169-265 103-197 (227)
194 PRK09260 3-hydroxybutyryl-CoA 52.8 19 0.00048 17.1 3.6 37 43-80 11-47 (289)
195 PRK08125 bifunctional UDP-gluc 52.4 19 0.00049 17.0 5.6 126 36-166 315-480 (660)
196 pfam03059 NAS Nicotianamine sy 51.9 15 0.00038 17.8 2.9 27 227-253 209-235 (277)
197 COG1064 AdhP Zn-dependent alco 51.8 20 0.0005 17.0 7.5 83 33-123 163-247 (339)
198 PRK09495 glnH glutamine ABC tr 51.8 20 0.0005 17.0 4.2 54 56-114 41-94 (247)
199 PRK13394 3-hydroxybutyrate deh 51.3 20 0.00051 16.9 7.2 71 44-114 13-95 (262)
200 PRK06129 3-hydroxyacyl-CoA deh 51.2 18 0.00046 17.2 3.2 37 43-80 11-47 (308)
201 COG4798 Predicted methyltransf 50.6 11 0.00028 18.6 2.1 43 26-68 38-83 (238)
202 PRK07819 3-hydroxybutyryl-CoA 50.5 19 0.00048 17.1 3.2 37 43-80 11-47 (284)
203 TIGR01983 UbiG ubiquinone bios 50.0 21 0.00054 16.8 6.3 79 31-109 79-165 (275)
204 PRK08293 3-hydroxybutyryl-CoA 48.9 22 0.00056 16.7 3.3 37 43-80 12-48 (288)
205 TIGR01259 comE comEA protein; 48.4 10 0.00025 18.9 1.5 48 141-194 59-107 (124)
206 COG4976 Predicted methyltransf 48.4 17 0.00043 17.4 2.7 124 104-255 98-230 (287)
207 cd05041 PTKc_Fes_like Catalyti 48.4 22 0.00057 16.6 3.7 172 36-219 64-251 (251)
208 KOG2671 consensus 48.2 8.5 0.00022 19.4 1.1 27 226-252 331-358 (421)
209 COG4262 Predicted spermidine s 47.3 23 0.00059 16.5 7.0 62 50-112 303-374 (508)
210 pfam01408 GFO_IDH_MocA Oxidore 46.8 24 0.0006 16.5 5.8 84 45-138 6-100 (120)
211 PRK06130 3-hydroxybutyryl-CoA 46.4 23 0.00058 16.6 3.1 38 43-81 14-51 (310)
212 PRK06198 short chain dehydroge 46.3 24 0.00061 16.4 6.6 70 44-113 12-94 (268)
213 KOG0199 consensus 46.0 14 0.00037 17.9 2.0 87 160-252 308-406 (1039)
214 PRK07201 short chain dehydroge 46.0 24 0.00062 16.4 6.7 74 41-114 379-464 (663)
215 PRK06035 3-hydroxyacyl-CoA deh 45.6 25 0.00063 16.4 3.4 37 43-80 12-48 (291)
216 pfam01234 NNMT_PNMT_TEMT NNMT/ 45.2 25 0.00063 16.3 3.2 97 152-249 91-199 (261)
217 TIGR03470 HpnH hopanoid biosyn 45.2 25 0.00064 16.3 4.4 12 101-112 189-200 (318)
218 PRK06124 gluconate 5-dehydroge 44.9 25 0.00064 16.3 8.3 72 44-115 20-103 (259)
219 PRK08277 D-mannonate oxidoredu 44.9 25 0.00064 16.3 6.7 73 43-115 15-99 (278)
220 PRK11260 cystine transporter s 44.7 25 0.00065 16.3 4.4 73 36-114 37-109 (264)
221 PRK11557 putative DNA-binding 44.7 25 0.00065 16.3 4.5 58 208-266 144-203 (282)
222 pfam02086 MethyltransfD12 D12 44.4 26 0.00065 16.2 6.7 56 24-79 8-63 (254)
223 PRK07231 fabG 3-ketoacyl-(acyl 44.1 26 0.00066 16.2 6.3 69 44-114 12-92 (250)
224 pfam02719 Polysacc_synt_2 Poly 44.0 26 0.00066 16.2 6.4 86 49-134 12-106 (280)
225 PRK05808 3-hydroxybutyryl-CoA 43.9 26 0.00067 16.2 3.3 32 49-80 15-48 (282)
226 PRK06940 short chain dehydroge 43.3 27 0.00068 16.1 6.8 70 46-115 12-91 (277)
227 COG3963 Phospholipid N-methylt 43.1 27 0.00068 16.1 7.5 85 22-110 34-124 (194)
228 PRK07066 3-hydroxybutyryl-CoA 42.9 27 0.00069 16.1 3.6 41 39-80 12-52 (321)
229 TIGR02716 C20_methyl_CrtF C-20 42.8 18 0.00046 17.2 2.1 18 231-248 236-253 (306)
230 KOG0788 consensus 42.7 7.3 0.00019 19.8 0.1 28 221-248 260-287 (334)
231 PRK07479 consensus 42.6 27 0.0007 16.1 7.5 72 43-114 10-93 (252)
232 PRK05441 murQ N-acetylmuramic 42.5 22 0.00056 16.7 2.5 23 144-166 197-219 (273)
233 TIGR01692 HIBADH 3-hydroxyisob 42.0 28 0.00071 16.0 3.9 33 48-80 9-41 (290)
234 cd05007 SIS_Etherase N-acetylm 41.8 22 0.00056 16.7 2.5 23 144-166 188-210 (257)
235 PRK04338 N(2),N(2)-dimethylgua 41.5 28 0.00072 16.0 10.5 102 29-133 44-149 (376)
236 pfam10354 DUF2431 Domain of un 41.4 27 0.00068 16.1 2.8 34 215-250 93-126 (166)
237 PRK08268 3-hydroxybutyryl-CoA 41.2 29 0.00073 15.9 3.4 38 42-80 11-48 (503)
238 PRK08085 gluconate 5-dehydroge 41.2 29 0.00073 15.9 8.5 64 51-114 26-97 (254)
239 TIGR01405 polC_Gram_pos DNA po 40.4 21 0.00053 16.9 2.1 32 64-95 500-534 (1264)
240 KOG2198 consensus 40.3 30 0.00076 15.8 6.5 84 31-115 150-248 (375)
241 TIGR01286 nifK nitrogenase mol 39.1 17 0.00043 17.4 1.5 38 85-124 232-270 (526)
242 TIGR02394 rpoS_proteo RNA poly 39.0 8.8 0.00022 19.2 0.1 11 120-130 92-102 (292)
243 pfam08343 RNR_N Ribonucleotide 39.0 9.6 0.00024 19.0 0.2 10 63-72 18-27 (82)
244 PRK05650 short chain dehydroge 39.0 31 0.00079 15.7 7.2 65 52-116 18-90 (270)
245 TIGR01132 pgm phosphoglucomuta 38.6 12 0.00031 18.3 0.7 41 41-81 390-434 (553)
246 PRK06482 short chain dehydroge 38.0 32 0.00082 15.6 5.8 71 40-114 6-87 (276)
247 COG3649 CRISPR system related 37.9 19 0.00049 17.0 1.7 18 122-139 115-132 (283)
248 cd01466 vWA_C3HC4_type VWA C3H 37.8 32 0.00082 15.6 3.7 28 225-252 18-45 (155)
249 PRK07660 consensus 37.4 33 0.00084 15.5 3.4 37 43-80 12-48 (283)
250 PRK06922 hypothetical protein; 37.3 33 0.00084 15.5 6.5 21 227-247 517-537 (679)
251 PRK08862 short chain dehydroge 36.7 34 0.00086 15.5 6.3 52 43-94 10-65 (227)
252 PRK09117 consensus 35.8 35 0.00089 15.4 3.2 31 49-79 16-46 (282)
253 PRK06500 short chain dehydroge 35.5 35 0.0009 15.4 7.4 60 51-113 23-90 (249)
254 PRK07063 short chain dehydroge 35.3 35 0.0009 15.3 6.6 72 43-114 12-96 (259)
255 TIGR02072 BioC biotin biosynth 34.9 36 0.00091 15.3 2.6 75 37-116 37-118 (272)
256 PRK06172 short chain dehydroge 34.8 36 0.00092 15.3 7.4 71 43-113 12-94 (253)
257 PRK07035 short chain dehydroge 34.8 36 0.00092 15.3 7.8 71 43-113 13-95 (252)
258 KOG4238 consensus 34.7 36 0.00092 15.3 4.7 33 38-70 52-90 (627)
259 pfam06263 consensus 34.2 30 0.00076 15.8 2.1 21 16-36 8-28 (514)
260 PRK07774 short chain dehydroge 33.8 37 0.00095 15.2 7.3 72 43-114 11-94 (250)
261 PRK13886 conjugal transfer pro 33.7 38 0.00096 15.2 4.7 117 40-164 6-143 (241)
262 PRK07530 3-hydroxybutyryl-CoA 33.7 38 0.00096 15.2 3.2 36 43-79 13-48 (292)
263 COG1491 Predicted RNA-binding 33.7 38 0.00096 15.2 2.9 27 169-195 139-165 (202)
264 TIGR02743 TraW type-F conjugat 33.2 38 0.00097 15.1 5.2 50 59-112 135-187 (217)
265 COG1352 CheR Methylase of chem 33.2 38 0.00097 15.1 4.7 58 19-76 76-147 (268)
266 COG4627 Uncharacterized protei 33.1 38 0.00098 15.1 2.9 22 226-247 63-84 (185)
267 PRK02412 aroD 3-dehydroquinate 33.0 27 0.00069 16.1 1.8 12 240-251 132-143 (253)
268 PRK08261 fabG 3-ketoacyl-(acyl 32.9 18 0.00047 17.2 0.9 38 35-72 79-127 (447)
269 TIGR01370 cysRS possible cyste 32.7 26 0.00067 16.2 1.7 31 91-124 155-185 (325)
270 PRK10923 glnG nitrogen regulat 32.6 39 0.001 15.1 6.0 22 242-263 273-294 (469)
271 pfam05148 Methyltransf_8 Hypot 32.0 40 0.001 15.0 3.9 39 227-267 131-170 (214)
272 PRK07531 bifunctional 3-hydrox 32.0 40 0.001 15.0 3.7 148 42-198 10-218 (489)
273 KOG4300 consensus 31.5 41 0.001 14.9 4.6 34 230-263 163-196 (252)
274 PRK08017 short chain dehydroge 31.4 41 0.001 14.9 6.1 24 51-74 19-42 (256)
275 pfam08660 Alg14 Oligosaccharid 31.2 41 0.001 14.9 5.1 32 45-76 5-45 (166)
276 pfam04811 Sec23_trunk Sec23/Se 31.0 41 0.0011 14.9 3.8 24 227-252 115-141 (241)
277 COG1090 Predicted nucleoside-d 31.0 42 0.0011 14.9 2.7 30 165-198 70-99 (297)
278 pfam07279 DUF1442 Protein of u 30.9 42 0.0011 14.9 9.2 85 25-111 29-123 (218)
279 PRK11302 DNA-binding transcrip 30.4 43 0.0011 14.8 4.3 31 236-267 170-200 (284)
280 pfam01418 HTH_6 Helix-turn-hel 30.4 43 0.0011 14.8 4.3 68 156-227 4-76 (106)
281 KOG2078 consensus 29.9 43 0.0011 14.8 4.1 68 26-94 240-310 (495)
282 PRK12570 N-acetylmuramic acid- 29.8 43 0.0011 14.8 2.6 25 142-166 195-219 (296)
283 PRK08251 short chain dehydroge 29.2 44 0.0011 14.7 6.3 72 43-114 10-92 (248)
284 PRK10887 glmM phosphoglucosami 29.0 45 0.0011 14.7 5.5 34 36-69 174-209 (445)
285 PRK07776 consensus 28.9 45 0.0011 14.7 6.4 69 44-114 14-94 (252)
286 TIGR02796 tolQ protein TolQ; I 28.9 26 0.00065 16.2 1.1 28 210-237 104-131 (219)
287 PRK06841 short chain dehydroge 28.8 45 0.0012 14.6 7.4 69 43-114 20-100 (255)
288 KOG1060 consensus 28.7 43 0.0011 14.8 2.2 110 65-179 191-330 (968)
289 pfam04919 DUF655 Protein of un 28.7 45 0.0012 14.6 2.9 27 169-195 125-151 (181)
290 PRK06194 hypothetical protein; 28.2 46 0.0012 14.6 7.3 73 43-115 11-95 (301)
291 TIGR02817 adh_fam_1 zinc-bindi 28.1 35 0.0009 15.3 1.7 37 44-80 157-198 (338)
292 PRK06720 hypothetical protein; 27.9 47 0.0012 14.5 7.0 72 43-114 21-104 (169)
293 pfam01370 Epimerase NAD depend 27.8 47 0.0012 14.5 4.9 59 51-114 15-76 (235)
294 cd00754 MoaD MoaD family. Memb 27.6 37 0.00094 15.2 1.7 51 186-250 26-76 (80)
295 PRK08177 short chain dehydroge 27.5 48 0.0012 14.5 4.8 62 51-114 18-82 (225)
296 cd05805 MPG1_transferase GTP-m 27.3 48 0.0012 14.5 6.3 33 36-68 168-202 (441)
297 pfam05971 Methyltransf_10 Prot 27.3 48 0.0012 14.5 3.9 51 39-90 68-124 (254)
298 PRK07576 short chain dehydroge 27.2 48 0.0012 14.5 6.0 69 44-112 14-94 (260)
299 COG4076 Predicted RNA methylas 26.8 49 0.0012 14.4 4.7 55 36-90 32-87 (252)
300 TIGR02085 meth_trns_rumB 23S r 26.6 49 0.0013 14.4 4.2 48 46-97 250-301 (386)
301 pfam01367 5_3_exonuc 5'-3' exo 26.2 50 0.0013 14.4 2.7 51 142-198 29-79 (100)
302 KOG2651 consensus 25.9 51 0.0013 14.3 4.8 54 24-78 140-196 (476)
303 KOG2985 consensus 25.8 28 0.00073 15.9 0.9 31 41-71 8-39 (306)
304 PRK05872 short chain dehydroge 25.1 53 0.0013 14.2 7.2 68 44-114 15-94 (296)
305 PRK07417 arogenate dehydrogena 24.8 53 0.0014 14.2 6.8 194 49-243 13-260 (280)
306 TIGR02153 gatD_arch glutamyl-t 24.7 42 0.0011 14.9 1.5 33 103-135 142-176 (413)
307 COG2604 Uncharacterized protei 24.5 54 0.0014 14.2 5.2 62 37-98 68-135 (594)
308 PRK05557 fabG 3-ketoacyl-(acyl 24.3 55 0.0014 14.1 7.3 72 43-114 10-94 (248)
309 PRK06200 2,3-dihydroxy-2,3-dih 24.2 55 0.0014 14.1 6.7 67 44-113 12-90 (263)
310 PRK09640 RNA polymerase sigma 24.0 55 0.0014 14.1 5.8 31 135-165 1-37 (188)
311 COG0270 Dcm Site-specific DNA 23.8 56 0.0014 14.1 6.8 76 38-129 4-84 (328)
312 KOG2557 consensus 23.8 30 0.00078 15.8 0.7 37 207-245 298-334 (427)
313 KOG3178 consensus 23.7 56 0.0014 14.1 4.0 29 16-46 51-79 (342)
314 TIGR02279 PaaC-3OHAcCoADH 3-hy 23.4 38 0.00096 15.2 1.1 89 65-168 391-490 (508)
315 TIGR01777 yfcH conserved hypot 23.4 50 0.0013 14.4 1.7 29 166-198 83-111 (307)
316 COG2176 PolC DNA polymerase II 23.3 57 0.0015 14.0 2.4 24 226-249 712-735 (1444)
317 pfam04672 DUF574 Protein of un 23.0 58 0.0015 14.0 3.7 78 25-102 57-141 (268)
318 PRK07062 short chain dehydroge 23.0 58 0.0015 14.0 7.7 70 44-113 14-97 (265)
319 PRK10538 3-hydroxy acid dehydr 23.0 58 0.0015 14.0 6.6 61 51-114 17-85 (248)
320 pfam00145 DNA_methylase C-5 cy 22.9 58 0.0015 14.0 5.3 41 39-79 2-43 (319)
321 TIGR02824 quinone_pig3 putativ 22.7 58 0.0015 13.9 2.1 84 34-119 142-231 (334)
322 KOG1500 consensus 22.7 58 0.0015 13.9 6.5 78 28-109 169-249 (517)
323 pfam03853 YjeF_N YjeF-related 22.7 58 0.0015 13.9 2.6 58 27-85 19-87 (170)
324 TIGR01233 lacG 6-phospho-beta- 22.6 47 0.0012 14.5 1.5 54 36-94 241-302 (473)
325 KOG1419 consensus 22.3 43 0.0011 14.8 1.2 44 177-220 471-515 (654)
326 smart00062 PBPb Bacterial peri 22.3 24 0.00062 16.4 -0.0 54 57-115 18-71 (219)
327 TIGR03309 matur_yqeB selenium- 22.3 22 0.00057 16.6 -0.2 30 18-47 72-101 (256)
328 COG1724 Predicted RNA binding 22.3 44 0.0011 14.7 1.3 18 238-255 33-50 (66)
329 PRK08339 short chain dehydroge 22.2 60 0.0015 13.9 6.0 71 43-113 13-95 (263)
330 cd01468 trunk_domain trunk dom 22.2 60 0.0015 13.9 3.8 24 227-252 117-143 (239)
331 TIGR00726 TIGR00726 conserved 21.9 17 0.00043 17.4 -0.9 27 105-131 209-243 (268)
332 PRK07102 short chain dehydroge 21.8 61 0.0016 13.8 6.4 71 43-113 9-86 (243)
333 COG0138 PurH AICAR transformyl 21.6 39 0.001 15.0 0.9 80 219-302 307-402 (515)
334 COG1717 RPL32 Ribosomal protei 21.5 56 0.0014 14.0 1.7 16 107-125 59-74 (133)
335 TIGR00537 hemK_rel_arch methyl 21.5 62 0.0016 13.8 6.1 87 23-114 10-97 (183)
336 PRK05565 fabG 3-ketoacyl-(acyl 21.5 62 0.0016 13.8 7.0 64 51-114 22-94 (247)
337 pfam05185 PRMT5 PRMT5 arginine 21.4 62 0.0016 13.8 4.5 36 60-95 216-253 (447)
338 PRK09186 flagellin modificatio 21.4 62 0.0016 13.8 6.0 68 44-111 10-90 (255)
339 PRK06227 consensus 21.3 62 0.0016 13.8 7.4 72 43-114 10-93 (256)
340 TIGR01369 CPSaseII_lrg carbamo 21.1 60 0.0015 13.9 1.7 95 74-178 32-153 (1089)
341 COG0618 Exopolyphosphatase-rel 20.9 23 0.00058 16.6 -0.4 12 64-75 25-36 (332)
342 PRK07831 short chain dehydroge 20.9 64 0.0016 13.7 7.1 66 49-114 32-107 (261)
343 TIGR01444 fkbM_fam methyltrans 20.8 64 0.0016 13.7 5.9 59 39-97 1-66 (142)
344 PRK07502 cyclohexadienyl dehyd 20.7 64 0.0016 13.7 7.0 197 46-243 15-270 (307)
345 TIGR00475 selB selenocysteine- 20.6 22 0.00057 16.7 -0.5 38 99-137 31-69 (627)
346 pfam04989 CmcI Cephalosporin h 20.5 65 0.0017 13.6 7.8 66 23-95 22-93 (202)
347 pfam02963 EcoRI Restriction en 20.0 38 0.00096 15.2 0.5 29 230-258 157-189 (257)
348 PRK07024 short chain dehydroge 20.0 66 0.0017 13.6 6.4 70 43-114 10-88 (256)
No 1
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=100.00 E-value=0 Score=844.74 Aligned_cols=299 Identities=43% Similarity=0.660 Sum_probs=282.2
Q ss_pred CCCCCHHHHH---HHHHCCCCCCEEEECCCCCCHHHHHHHHH--C-CEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCC
Q ss_conf 8334009868---86608388888998376882889999974--8-9099980998999999998521488-52771132
Q gi|255764511|r 19 DHVPVLLEKV---IALLNPAPGKVILDATFGAGGYSRSFCKM--G-SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQAT 91 (341)
Q Consensus 19 ~H~PVll~Ev---l~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~-~~liaiDrD~~ai~~a~~~l~~~~~-r~~~~~~~ 91 (341)
.|.||||+|+ |+.|.++|+|+|||||+|.||||++||++ . ++|+|+|+|++||..|++++.++.+ ++.++|++
T Consensus 7 ~H~sVLL~E~Cklv~~L~ik~~G~YiD~T~G~GGHS~~iL~ql~~~g~L~~iD~D~~ai~~A~~~l~~~~~~~~~~~~~~ 86 (323)
T TIGR00006 7 KHQSVLLDEVCKLVEGLNIKPDGIYIDCTLGRGGHSKAILEQLSEKGRLIGIDRDKQAIAFAKELLKDFEGRRVVLIHDN 86 (323)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 89861088999997276548887365402585178999985239995078874798999999998532106757885076
Q ss_pred HHHHHHHHHHC----CCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC--CCCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 78898765312----33247862252078887654073445664101043556--8418999862225789989997446
Q gi|255764511|r 92 FSQLQDYVPDK----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGE 165 (341)
Q Consensus 92 F~~i~~~l~~~----~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~--~~tA~eiln~~s~~~L~~i~~~yGe 165 (341)
|+++.+++... +|||||+||||||+|||+++|||||++|||||||||++ ++||.||||+|++++|+.|||+|||
T Consensus 87 F~~~~~~~~~~~~~~k~dGIL~DLGVSS~QLD~~~RGFSF~~d~PLDMRMD~s~~~~sA~e~~~~~~~~dL~~il~~yGE 166 (323)
T TIGR00006 87 FANFFEYLKELDLVTKIDGILVDLGVSSPQLDDPERGFSFKHDGPLDMRMDQSSQKLSAAEVLNTYSEEDLERILKKYGE 166 (323)
T ss_pred CHHHHHHHHCCCCEEEEEEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCC
T ss_conf 03420032115881577458861577603118788882646787966545655565778999840008999999987252
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 3026889999999975212432137999999887643-127712578888887665134057899999988520244533
Q gi|255764511|r 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGL 244 (341)
Q Consensus 166 e~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~~-~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGr 244 (341)
|++|||||++|+++|+++|+.||.||+++|.++++.+ +++++|||||||||||||||+||++|+.+|..++++|+||||
T Consensus 167 e~~~KrIA~~I~e~~~~~p~~tT~~Lae~i~~a~p~f~K~k~~hPAtrvFQAiRI~vNdEL~~Le~~L~~~~~~L~~~Gr 246 (323)
T TIGR00006 167 EKFSKRIARAIVEARKKKPIQTTKELAELISKAVPGFSKHKSIHPATRVFQAIRIYVNDELEELEEALQQAPNLLKPGGR 246 (323)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 02430678999999842788757789999997447610047888512555356778887899999999999984178971
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----EEECCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 8998725502389999998641788777656778777754----045248654788899982871001232377871
Q gi|255764511|r 245 LIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV----FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 (341)
Q Consensus 245 l~VISFHSLEDRiVK~ff~~~~~~~~~~~~~~~~~~~~~~----~~~l~kkpi~PS~~Ei~~NpRSRSAKLRv~~k~ 317 (341)
++|||||||||||||+||+..+..+.+|..+|+.+..... -++++||||.||++||+.|||||||||||++|.
T Consensus 247 l~vIsFHSLEDriVK~~f~~~s~~~~~P~~LP~~~~~~~~~GG~~~~itkKPI~Ps~~Ei~~NpRsRSAkLRv~ek~ 323 (323)
T TIGR00006 247 LSVISFHSLEDRIVKNFFKELSKFPQVPPGLPVKEEQLYALGGRKLRITKKPITPSEEEIKENPRSRSAKLRVAEKK 323 (323)
T ss_pred EEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHCCCCCCCHHHHHHCCCCCCEEEEEEECC
T ss_conf 89874000567999999986147667877688653601123631223331789987899962988531100111319
No 2
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=100.00 E-value=0 Score=836.09 Aligned_cols=299 Identities=43% Similarity=0.713 Sum_probs=286.0
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH
Q ss_conf 833400986886608388888998376882889999974---89099980998999999998521488527711327889
Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 (341)
Q Consensus 19 ~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i 95 (341)
+|+|||++||+++|.+.++|+|||||||+||||++||++ .++|+|||+||+|+..|++++.+|++||.++|+||+++
T Consensus 3 ~H~PVll~Evi~~L~~~~~g~yvD~T~G~GGHS~~iL~~~~~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~l 82 (310)
T pfam01795 3 HHISVLLQEVVELLNIKPDGIYIDCTLGGGGHSEAILEQLPEEGRLIGIDRDPQAIANAKERLKPFKGRVTLIHSNFANL 82 (310)
T ss_pred CCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEEECCHHHH
T ss_conf 76411199999726838999999958897199999998489999799998989999999985302588589992537579
Q ss_pred HHHHHHC---CCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC-CCCHHHHHHHCCHHHHHHHHHHHCCCCHHHH
Q ss_conf 8765312---33247862252078887654073445664101043556-8418999862225789989997446302688
Q gi|255764511|r 96 QDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASR 171 (341)
Q Consensus 96 ~~~l~~~---~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~-~~tA~eiln~~s~~~L~~i~~~yGee~~a~~ 171 (341)
.+++... +|||||+||||||+|||+++|||||+.|||||||||++ ++||+||||+||+++|++||++||||++|++
T Consensus 83 ~~~l~~~~~~~vdGil~DLGvSS~Qld~~~RGFSf~~dgpLDMRMd~~~~~tA~~iln~~~e~eL~~il~~yGEe~~a~~ 162 (310)
T pfam01795 83 FAYLKELGVGKVDGILFDLGVSSPQLDGAERGFSFKHDAPLDMRMDQSAGLTAAEVLNTYSEEDLARIFKKYGEERFSKR 162 (310)
T ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHH
T ss_conf 99998759876678999644681421477568675889987666678999849999850899999999998577456999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 9999999975212432137999999887643-127712578888887665134057899999988520244533899872
Q gi|255764511|r 172 IAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 (341)
Q Consensus 172 IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~~-~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISF 250 (341)
||++||++|++++|+||.||+++|..++|.. ++.++||||||||||||+||+||++|+.+|.+++++|+|||||+||||
T Consensus 163 IA~~Iv~~R~~~~i~tT~~L~~iI~~~~p~~~~~~~~hpAtr~FQALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISF 242 (310)
T pfam01795 163 IARAIVERRKKKPIETTKELAEIIKKAVPAKAKRKKIHPATRTFQAIRIYVNDELESLKEALEQAPDLLAPGGRLSVISF 242 (310)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 99999999986277779999999998560110145667389999999999977999999999999983689968999985
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 55023899999986417887776567-78777754045248654788899982871001232377871
Q gi|255764511|r 251 HSLEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 (341)
Q Consensus 251 HSLEDRiVK~ff~~~~~~~~~~~~~~-~~~~~~~~~~~l~kkpi~PS~~Ei~~NpRSRSAKLRv~~k~ 317 (341)
|||||||||+||+.++..+.|++..+ +.+.....|++++||||+||++|++.|||||||||||++|+
T Consensus 243 HSLEDRiVK~ff~~~~~~~~~p~~~p~~~~~~~~~~~~ltkK~i~ps~~Ei~~NpRSRSAKLRvaeKi 310 (310)
T pfam01795 243 HSLEDRIVKNFFREYSKGCQVPAGLPVILEGLEPLLKIITKKPILPSEEEIEENPRSRSAKLRVAEKI 310 (310)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCHHHHHHEEEEEC
T ss_conf 43467999999998403678885568665567754355069991829999962962662033048959
No 3
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=100.00 E-value=0 Score=835.92 Aligned_cols=299 Identities=45% Similarity=0.731 Sum_probs=285.8
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 7833400986886608388888998376882889999974---8909998099899999999852148852771132788
Q gi|255764511|r 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341)
Q Consensus 18 ~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341)
..|+|||++||+++|.+.++|+|||||||+||||++||++ +++|||||+||+|+..|++++++|++||.++|+||++
T Consensus 5 ~~H~PVll~Evl~~L~~~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~a~~~l~~~~~r~~~~~~nF~~ 84 (309)
T PRK00050 5 FKHIPVLLDEVVDGLAIKPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAAAKERLDPFGGRFTIVHGNFSD 84 (309)
T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 85066318999983682899999993889839999999727999889999898899999999865258828999277988
Q ss_pred HHHHHHH-CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC-CCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9876531-233247862252078887654073445664101043556-84189998622257899899974463026889
Q gi|255764511|r 95 LQDYVPD-KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQASRI 172 (341)
Q Consensus 95 i~~~l~~-~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~-~~tA~eiln~~s~~~L~~i~~~yGee~~a~~I 172 (341)
+.+++.. .+|||||+||||||+|||+++|||||+.|||||||||++ ++||+||||+||+++|++||++||||++|++|
T Consensus 85 l~~~l~~~~~vdgil~DLGvSS~Qld~~~RGFSF~~dgpLDMRMd~~~~~tA~~iln~~se~eL~~I~~~yGEer~a~~I 164 (309)
T PRK00050 85 LAEYLAEVGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDPTRGLSAAEVVNTYSEEDLARIFKTYGEERFAKRI 164 (309)
T ss_pred HHHHHHHCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999863887789997224833203776787567899853122688998899998738999999999996653269999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99999997521243213799999988764312771257888888766513405789999998852024453389987255
Q gi|255764511|r 173 AHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 (341)
Q Consensus 173 A~~Iv~~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHS 252 (341)
|++||++|++++|+||.||+++|..+++. ++.++||||||||||||+||+||++|+.+|.+++++|+|||||+||||||
T Consensus 165 A~~Iv~~R~~~~i~tt~~L~~ii~~~~~~-~~~~~hpATr~FQALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~vISfHS 243 (309)
T PRK00050 165 ARAIVERRAKKPITTTKELAEIIASAVPA-RRKKIHPATRTFQAIRIEVNDELEELEEALEAALEVLAPGGRLSVISFHS 243 (309)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 99999999737872489999999996677-64441269999999999970269999999999999985075399998433
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 023899999986417887776567-78777754045248654788899982871001232377871
Q gi|255764511|r 253 LEDRLVKKFFASRSGKVMAVRHMI-PSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRT 317 (341)
Q Consensus 253 LEDRiVK~ff~~~~~~~~~~~~~~-~~~~~~~~~~~l~kkpi~PS~~Ei~~NpRSRSAKLRv~~k~ 317 (341)
|||||||+||+.++..+.|++..| +.+...+.|++++||||+||++||+.|||||||||||++|+
T Consensus 244 LEDRiVK~ff~~~~~~~~~~~~~p~~~~~~~~~~~~i~kkpi~ps~~Ei~~NpRsRSAkLRv~ekl 309 (309)
T PRK00050 244 LEDRIVKRFFKEASKGPIVPRGLPVCECGLHPLLKLLTKKAIMPSEEEIEANPRSRSAKLRVAEKI 309 (309)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCHHHHHHEEEEEC
T ss_conf 257899999997324688985567554456875788578680859999962962562032037859
No 4
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=824.63 Aligned_cols=301 Identities=45% Similarity=0.741 Sum_probs=283.5
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC---CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 78334009868866083888889983768828899999748---909998099899999999852148852771132788
Q gi|255764511|r 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341)
Q Consensus 18 ~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~---~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341)
-.|+|||++|+++.|.+.++|+|||||||+||||++||++. ++|+|+||||+||..|++++.+|++||+++|+||++
T Consensus 5 ~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 5 FRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred CCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 77621179999985264899479982377747689999858988708997689899999999853037848999576878
Q ss_pred HHHHHHHC---CCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC-CCCHHHHHHHCCHHHHHHHHHHHCCCCHHH
Q ss_conf 98765312---33247862252078887654073445664101043556-841899986222578998999744630268
Q gi|255764511|r 95 LQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEEKQAS 170 (341)
Q Consensus 95 i~~~l~~~---~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~-~~tA~eiln~~s~~~L~~i~~~yGee~~a~ 170 (341)
+...+... +|||||+||||||||||+++|||||+.|||||||||++ ++||+||||+|++++|++||++||||++|+
T Consensus 85 l~~~l~~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~ar 164 (314)
T COG0275 85 LAEALKELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERFAK 164 (314)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHH
T ss_conf 99888763887222799953678320288767860278898656748888978999985599999999999845176689
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 89999999975212432137999999887643-12771257888888766513405789999998852024453389987
Q gi|255764511|r 171 RIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFS-KNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 (341)
Q Consensus 171 ~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~~-~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VIS 249 (341)
+||++||++|+++||+||.||+++|..++|.. +..++|||||||||||||||+||++|+.+|.+++++|+|||||+|||
T Consensus 165 rIA~aIv~~R~~~pi~tT~eLaeiI~~~~p~~~~~k~~hPAtr~FQAiRI~VNdEL~~L~~~L~~a~~~L~~~GRl~VIs 244 (314)
T COG0275 165 RIARAIVERRKKKPIETTKELAEIIKSAIPAKEKRKKIHPATRTFQAIRIYVNDELEELEEALEAALDLLKPGGRLAVIS 244 (314)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHHEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999999862698766999999999867701113678950665634100005679999999999999618896799999
Q ss_pred ECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-EEECCCCCCCCCHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf 25502389999998641788777656778777754-04524865478889998287100123237787178
Q gi|255764511|r 250 FHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAV-FQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVE 319 (341)
Q Consensus 250 FHSLEDRiVK~ff~~~~~~~~~~~~~~~~~~~~~~-~~~l~kkpi~PS~~Ei~~NpRSRSAKLRv~~k~~~ 319 (341)
||||||||||+||+.++. +.+|+..|..+..... +++++||||.||++|++.|||||||||||++|+.+
T Consensus 245 FHSLEDRiVK~ff~~~s~-~~~p~~lP~~~~~~~~~~~~itkK~i~ps~~Ei~~NpRsRSAkLRv~ek~~~ 314 (314)
T COG0275 245 FHSLEDRIVKNFFKELSK-PGVPKGLPVTEEGPALKFKLITKKPIMPSEEEIEANPRARSAKLRVAEKIEA 314 (314)
T ss_pred ECCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 534289999999998404-6899888744466541010004788689999997295102057776565129
No 5
>KOG2782 consensus
Probab=100.00 E-value=0 Score=513.13 Aligned_cols=256 Identities=39% Similarity=0.577 Sum_probs=236.0
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHH-HHCCCCEEE
Q ss_conf 1101160783340098688660838888899837688288999997489--0999809989999999985-214885277
Q gi|255764511|r 11 SAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETM-RDYKEQFSL 87 (341)
Q Consensus 11 ~~~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l-~~~~~r~~~ 87 (341)
+.+..+...|+|||++|++++|+|.++++|+|||||+||||..||++.+ ++||+||||-|-+.|.-.. +.|..++..
T Consensus 18 a~~d~~~~~HVPVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a 97 (303)
T KOG2782 18 ADGDEVPSSHVPVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKA 97 (303)
T ss_pred CCCCCCCCCCCCEEHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 45663555677545665898727778864788750577420788874727664000458689999987557551466999
Q ss_pred ECCCHHHHHHHHHH-----CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC-CCCHHHHHHHCCHHHHHHHHH
Q ss_conf 11327889876531-----233247862252078887654073445664101043556-841899986222578998999
Q gi|255764511|r 88 FQATFSQLQDYVPD-----KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILG 161 (341)
Q Consensus 88 ~~~~F~~i~~~l~~-----~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~-~~tA~eiln~~s~~~L~~i~~ 161 (341)
..++|+.+..++.+ .+|||||+|||.||||+|+|+||||...|||||||||+. ...|.+++|+++|.+|.+|++
T Consensus 98 ~Lg~Fs~~~~l~~~~gl~~~~vDGiLmDlGcSSMQ~d~peRGFSv~~dGpLDMRMDgg~s~g~~~~~~~~~e~~l~rvlr 177 (303)
T KOG2782 98 VLGNFSYIKSLIADTGLLDVGVDGILMDLGCSSMQVDNPERGFSVLQDGPLDMRMDGGASLGAEDIVNSWPESELGRVLR 177 (303)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCEEECCCCCCEEECCCCCCCEEEEECCCCHHHHHHHHH
T ss_conf 98516777999998187757755487604765110378555623302688421105887664156542665146778998
Q ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 7446302688999999997521243213799999988764---3127712578888887665134057899999988520
Q gi|255764511|r 162 ILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF---SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKA 238 (341)
Q Consensus 162 ~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~---~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~ 238 (341)
.||||++|++|++.||++|....|.||.||+++|+...+. ++..-+|.|||+||+|||+||+||++|...|-.+.++
T Consensus 178 ~ygee~~~~~l~~~iv~ar~~~~l~st~~l~dli~~~~~~~r~~~~~~~~tatk~fqg~ri~vnnel~~~~~~~~l~~~v 257 (303)
T KOG2782 178 DYGEESNWYLLQNRIVKARLNGGLHSTGELVDLIRGTSPASRGGRQGWIKTATKVFQGLRIAVNNELKTLQNSLYLSFDV 257 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCC
T ss_conf 74035678998766677654256433035777750688545555346433465144457887642465434745334324
Q ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHC
Q ss_conf 2445338998725502389999998641
Q gi|255764511|r 239 LKAGGLLIVVSFHSLEDRLVKKFFASRS 266 (341)
Q Consensus 239 L~~gGrl~VISFHSLEDRiVK~ff~~~~ 266 (341)
|.||||+++|||||||||+||+.|...-
T Consensus 258 l~~~grl~~isfhSLed~vvkr~~~~i~ 285 (303)
T KOG2782 258 LAPGGRLAVISFHSLEDRVVKRTFLDIL 285 (303)
T ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 6777607998715678999999875331
No 6
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=98.40 E-value=5.6e-07 Score=65.73 Aligned_cols=111 Identities=27% Similarity=0.465 Sum_probs=85.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 0999809989999999985214--88527711327889876531233247862252078887654073445664101043
Q gi|255764511|r 60 NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 (341)
Q Consensus 60 ~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRm 137 (341)
+|||||.+++|+..++++|++. .+++.+++.++++|.+++++.+|++++|+|||=- .| |
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLP--------------gg--D--- 61 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLP--------------GG--D--- 61 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCC--------------CC--C---
T ss_conf 9579960999999999999965987568999779888986376467668999667688--------------99--9---
Q ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 55684189998622257899899974463026889999999975212432137999999887643127712578888887
Q gi|255764511|r 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 (341)
Q Consensus 138 d~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQAL 217 (341)
+.|+|+.+ | |
T Consensus 62 ---------------------------------------------k~i~T~~~--------------------t-T---- 71 (140)
T pfam06962 62 ---------------------------------------------KSITTKPD--------------------T-T---- 71 (140)
T ss_pred ---------------------------------------------CCCEECCH--------------------H-H----
T ss_conf ---------------------------------------------87587772--------------------0-9----
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE--CC---CHHHHHHHHHHHHCCCCC
Q ss_conf 665134057899999988520244533899872--55---023899999986417887
Q gi|255764511|r 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF--HS---LEDRLVKKFFASRSGKVM 270 (341)
Q Consensus 218 RI~VN~El~~L~~~L~~~~~~L~~gGrl~VISF--HS---LEDRiVK~ff~~~~~~~~ 270 (341)
-.+|.++..+|+|||++.|+.| |. -|-..|.+|.+.......
T Consensus 72 -----------i~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~aV~~~~~~L~~~~~ 118 (140)
T pfam06962 72 -----------LEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVLDFVSNLDQKKW 118 (140)
T ss_pred -----------HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHE
T ss_conf -----------99999999963669899999979999879999999999984896057
No 7
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=98.36 E-value=7.9e-06 Score=58.31 Aligned_cols=129 Identities=23% Similarity=0.358 Sum_probs=90.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHH--CCCCEEEEECCC
Q ss_conf 88998376882889999974890999809989999999985214--88527711327889876531--233247862252
Q gi|255764511|r 38 KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD--KGVDGVVFDLGV 113 (341)
Q Consensus 38 g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~--~~vdgIl~DLGv 113 (341)
.+++|+--|.||-+-++-..+.+|+|+|.||.+++.|+.+.+.| .+|+.|+++.|-++.+.+.. ..+|.|++|
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~~~~~l~~~~~~~DvVf~s--- 78 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFELLAKLKFGKIPYDCVFLS--- 78 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEC---
T ss_conf 79999377807999999975898999979899999999989983987317999775999978876358875589977---
Q ss_pred HHHHHHHHHHCCCCCCCCCEECC--CCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 07888765407344566410104--3556841899986222578998999744630268899999999752124321379
Q gi|255764511|r 114 SSMQIDCGDRGFSFQKSGPLDMR--MSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDL 191 (341)
Q Consensus 114 SS~Qld~~~RGFSf~~dgpLDMR--md~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL 191 (341)
+ |=-|=+|......|+. |.|-+ +.++++ .+++|++.|+-.--++ ....||
T Consensus 79 --P----PWGGp~Y~~~~~fdl~~~~~p~~--------------~~~l~~------~~~~it~ni~lfLPrn--~d~~ql 130 (165)
T pfam09445 79 --P----PWGGPSYKRQNVYDLEKKLKPYG--------------LYQLLK------ESTEISKNIILFLPRN--SDLNQL 130 (165)
T ss_pred --C----CCCCCCCCCCCCCCHHHCCCCCC--------------HHHHHH------HHHHHCCCEEEECCCC--CCHHHH
T ss_conf --9----99998856567668777268779--------------999999------9986362579984898--998999
Q ss_pred HHHHHH
Q ss_conf 999998
Q gi|255764511|r 192 SSLIQK 197 (341)
Q Consensus 192 ~~iI~~ 197 (341)
+++...
T Consensus 131 ~~~~~~ 136 (165)
T pfam09445 131 SSLTRE 136 (165)
T ss_pred HHHHHH
T ss_conf 998776
No 8
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.31 E-value=1.7e-05 Score=56.22 Aligned_cols=180 Identities=22% Similarity=0.337 Sum_probs=119.9
Q ss_pred CCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC---CEEEEECCCHHHHHHHHHHHHHC-
Q ss_conf 64320110116078334009868866083888889983768828899999748---90999809989999999985214-
Q gi|255764511|r 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDY- 81 (341)
Q Consensus 6 ~~~m~~~~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~---~~liaiDrD~~ai~~a~~~l~~~- 81 (341)
-+.|+.-|+. +.|. ..-+++++.+.+.++..++|.-.|.|--+..+.+.. ++|+|+|..+.++..|+++....
T Consensus 24 YD~~N~~~S~--G~~~-~Wr~~~v~~l~~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~ 100 (239)
T PRK00216 24 YDLMNDLLSF--GLHR-VWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKG 100 (239)
T ss_pred HHHHHHHHCC--CHHH-HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 8587667507--5199-999999986278999989884577638799999972997679999198899999999999738
Q ss_pred -CCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC-----CCCCCC---EECCCCCCCCCHHHHHHHCC
Q ss_conf -885277113278898765312332478622520788876540734-----456641---01043556841899986222
Q gi|255764511|r 82 -KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGP---LDMRMSCSGISASDVVNQAN 152 (341)
Q Consensus 82 -~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgp---LDMRmd~~~~tA~eiln~~s 152 (341)
..++.+.+++..++. .++..+|.|..-+|+ +.+.|++++++ .+..|. ||+-. |++.....+-+-|.
T Consensus 101 ~~~~i~~~~~da~~lp--f~d~sfD~v~~~f~l--~~~~d~~~~l~E~~RVLkPGG~l~ilefs~-p~~~~~~~~y~~Y~ 175 (239)
T PRK00216 101 LSGNVEFVQGDAEALP--FPDNSFDAVTIAFGL--RNVPDIDKALREMYRVLKPGGRLVILEFSK-PTNPPLKKAYDFYL 175 (239)
T ss_pred CCCCCEEEEECCCCCC--CCCCCCCCCCCCCEE--EECCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCHHHHHHHHHHH
T ss_conf 9888507982355688--876667650026156--714867999999998766480899997589-99768899999999
Q ss_pred HHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 5789989997446302688-9999999975212432137999999887
Q gi|255764511|r 153 VKDLTRILGILGEEKQASR-IAHAIVKRRQSAPFQTTQDLSSLIQKTV 199 (341)
Q Consensus 153 ~~~L~~i~~~yGee~~a~~-IA~~Iv~~R~~~~i~TT~eL~~iI~~~~ 199 (341)
..-+-.|=+-++..+.|.+ ++..|. .+.+..++.++++++.
T Consensus 176 ~~ilP~ig~~~~~~~~aY~YL~~Si~------~fp~~~~~~~~l~~aG 217 (239)
T PRK00216 176 FKVLPLIGKLVSKNAEAYRYLAESIR------AFPDQEELAAMMEEAG 217 (239)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH------HCCCHHHHHHHHHHCC
T ss_conf 99999999997198788876999999------8889999999999879
No 9
>PRK08317 hypothetical protein; Provisional
Probab=98.07 E-value=2.7e-05 Score=54.88 Aligned_cols=98 Identities=20% Similarity=0.327 Sum_probs=82.5
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 986886608388888998376882889999974---89099980998999999998521488527711327889876531
Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 (341)
Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~ 101 (341)
-+.+++.|.++||..++|.=.|.|..+..+.+. .++|+|+|.++.++..++++.+....++.+.+++..++. ++.
T Consensus 8 r~~~l~~L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp--~~d 85 (241)
T PRK08317 8 RARTFELLAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLP--FPD 85 (241)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCC--CCC
T ss_conf 999997369999799999664174999999997499978999969889999999998622896499955464358--988
Q ss_pred CCCCEEEEECCCHHHHHHHHHHCCC
Q ss_conf 2332478622520788876540734
Q gi|255764511|r 102 KGVDGVVFDLGVSSMQIDCGDRGFS 126 (341)
Q Consensus 102 ~~vdgIl~DLGvSS~Qld~~~RGFS 126 (341)
..||.|+.... -+++.|+++-+.
T Consensus 86 ~sfD~v~~~~~--l~h~~d~~~~l~ 108 (241)
T PRK08317 86 ESFDAVRSDRV--LQHLEDPRRALA 108 (241)
T ss_pred CCCCEEEHHHH--HHHCCCHHHHHH
T ss_conf 87045622115--762258999999
No 10
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.78 E-value=0.00042 Score=47.18 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=59.4
Q ss_pred EEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 998376882889999974-890999809989999999985214-885277113278898765312332478622520
Q gi|255764511|r 40 ILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341)
Q Consensus 40 ~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341)
++|.--|.|.++..+.+. +.+++|+|.++++++.++++.... .+++.+++.++.++.. .....+|.|+.+..+.
T Consensus 2 VLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~fD~V~~~~~~~ 77 (107)
T cd02440 2 VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred EEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCH-HHCCCEEEEEEECCEE
T ss_conf 999988879999999956898899998988899999998753278864671488678863-2057531999917501
No 11
>KOG2730 consensus
Probab=97.72 E-value=5.3e-05 Score=53.01 Aligned_cols=65 Identities=29% Similarity=0.554 Sum_probs=57.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHH
Q ss_conf 88889983768828899999748909998099899999999852148--852771132788987653
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVP 100 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l~ 100 (341)
....+||+-+|+||-+-.+-..++.||++|.||.-|+.|++.++-|+ +|++|+++.|-++..-++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq 160 (263)
T KOG2730 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLK 160 (263)
T ss_pred CCCHHHHHHHCCCCHHHHHHHHCCEEEEEECCHHHHHHHHCCCEEECCCCEEEEEECHHHHHHHHHH
T ss_conf 7430025453688428899871880799852678888776065032577505888330999999886
No 12
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=97.68 E-value=0.00037 Score=47.50 Aligned_cols=93 Identities=16% Similarity=0.246 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH----CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHH
Q ss_conf 33400986886608388888998376882889999974----8909998099899999999852148-852771132788
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQ 94 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~----~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~ 94 (341)
-.|-|+-.+++.|+++++..++|---|. ||..++|.. .++|+++|+|++....|++++...+ +++.+++++-..
T Consensus 57 s~P~~~a~ml~~L~l~~g~~VLeIGtGs-GY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~ 135 (205)
T pfam01135 57 SAPHMHAMMLELLELKPGMRVLEIGSGS-GYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQ 135 (205)
T ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 6389999999970789999899966996-599999999838787699983589999999999998488865898456455
Q ss_pred HHHHHHHCCCCEEEEECCCHH
Q ss_conf 987653123324786225207
Q gi|255764511|r 95 LQDYVPDKGVDGVVFDLGVSS 115 (341)
Q Consensus 95 i~~~l~~~~vdgIl~DLGvSS 115 (341)
.+-....+|.|+..-++..
T Consensus 136 --g~~~~apfD~Iiv~aa~~~ 154 (205)
T pfam01135 136 --GWPEFAPYDAIHVGAAAPE 154 (205)
T ss_pred --CCCCCCCCCEEEEEEECCC
T ss_conf --8833398058999750676
No 13
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.63 E-value=0.00049 Score=46.76 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=29.5
Q ss_pred CHHHHH-HHHHHHHHCCCCCCEEEEEEECCCH----HHHHHHHHHHHC
Q ss_conf 057899-9999885202445338998725502----389999998641
Q gi|255764511|r 224 EIEELA-QGLRSAEKALKAGGLLIVVSFHSLE----DRLVKKFFASRS 266 (341)
Q Consensus 224 El~~L~-~~L~~~~~~L~~gGrl~VISFHSLE----DRiVK~ff~~~~ 266 (341)
||..|. ..|..+..+|+|||+|+-.| .|++ ...|..|++.+.
T Consensus 347 ~l~~lQ~~iL~~a~~~lk~gG~LvYsT-CSi~~eENe~~I~~FL~~~~ 393 (428)
T PRK10901 347 ELAQLQSEILDAIWPHLKSGGTLVYAT-CSVLPEENSQQIKAFLQRTP 393 (428)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCCHHHHHHHHHHHHHHCC
T ss_conf 999999999999998668898899998-99995778999999998599
No 14
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.59 E-value=0.00057 Score=46.32 Aligned_cols=93 Identities=14% Similarity=0.245 Sum_probs=76.3
Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHH
Q ss_conf 3400986886608388888998376882889999974-8909998099899999999852148-8527711327889876
Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDY 98 (341)
Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~ 98 (341)
.|-|+--+++.|+++++..+++---|. ||..++|.. .++|+++|+|++-...|++++...+ +++.+++++-.+ .+
T Consensus 63 ~P~~~A~ml~~L~l~~~~~VLeIGtGs-GY~tAlLa~l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~--g~ 139 (213)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGS-GYQAAVLAHLVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWK--GW 139 (213)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCC--CC
T ss_conf 799999999984368997599965986-099999998629289994289999999999998499876999688766--78
Q ss_pred HHHCCCCEEEEECCCHHH
Q ss_conf 531233247862252078
Q gi|255764511|r 99 VPDKGVDGVVFDLGVSSM 116 (341)
Q Consensus 99 l~~~~vdgIl~DLGvSS~ 116 (341)
.....+|.|+..-++...
T Consensus 140 ~~~~pfD~Iii~~a~~~~ 157 (213)
T PRK00312 140 PAYAPFDRILVTAAAPEI 157 (213)
T ss_pred CCCCCCCEEEEEECCHHH
T ss_conf 766972489998434122
No 15
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=97.59 E-value=0.00084 Score=45.22 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=69.0
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHH---HCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHC
Q ss_conf 88660838888899837688288999997---48909998099899999999852148--85277113278898765312
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCK---MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDK 102 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~---~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l~~~ 102 (341)
+++.|.+.+++++.|-=-|.|.=|-.... ..++|+|+|+|++++..++++.+.|+ +++.++++..-+...-+. .
T Consensus 32 ~l~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap~~l~~l~-p 110 (198)
T PRK00377 32 ALSKLRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAPEVLPKLN-P 110 (198)
T ss_pred HHHHHCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCC-C
T ss_conf 999709999899999177032999999996697875999967888999999999980999885999525488772089-9
Q ss_pred CCCEEEEECCCHHHHH
Q ss_conf 3324786225207888
Q gi|255764511|r 103 GVDGVVFDLGVSSMQI 118 (341)
Q Consensus 103 ~vdgIl~DLGvSS~Ql 118 (341)
.+|.|+..= |+-|+
T Consensus 111 ~pD~vFIGG--~~g~l 124 (198)
T PRK00377 111 KSDRYFIGG--GGEEL 124 (198)
T ss_pred CCCEEEEEC--CCCCH
T ss_conf 889899978--87778
No 16
>PRK07402 precorrin-6B methylase; Provisional
Probab=97.53 E-value=0.0013 Score=44.07 Aligned_cols=81 Identities=16% Similarity=0.256 Sum_probs=66.4
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCC
Q ss_conf 886608388888998376882889999974--8909998099899999999852148-8527711327889876531233
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGV 104 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~v 104 (341)
+|+.|.+.+++++.|---|.|.=|-..... .++|||+|+|++++..++++.+.|+ +++.++++..-+...-+. ...
T Consensus 32 ~l~kL~l~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~L~~l~-p~p 110 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPECLAQLA-PAP 110 (196)
T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCC-CCC
T ss_conf 9997089999999994788779999999878998899997688899999998997299987999726366684089-999
Q ss_pred CEEEE
Q ss_conf 24786
Q gi|255764511|r 105 DGVVF 109 (341)
Q Consensus 105 dgIl~ 109 (341)
|.|+.
T Consensus 111 D~vFI 115 (196)
T PRK07402 111 DRICI 115 (196)
T ss_pred CEEEE
T ss_conf 99998
No 17
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.51 E-value=0.0013 Score=44.09 Aligned_cols=91 Identities=18% Similarity=0.286 Sum_probs=71.2
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHH--HCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHC
Q ss_conf 8688660838888899837688288999997--48909998099899999999852148-85277113278898765312
Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDK 102 (341)
Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~--~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~ 102 (341)
-=+++-|.|.+++.++|---|.|.=+-...- ..+++||||+|++++...+.+.+.|+ +++.++.+.-.+...-+ .
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~ 101 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--P 101 (187)
T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHCCC--C
T ss_conf 98898608899998999578866899999973988559999258889999999999849996799954645763699--9
Q ss_pred CCCEEEEECCCHHHHH
Q ss_conf 3324786225207888
Q gi|255764511|r 103 GVDGVVFDLGVSSMQI 118 (341)
Q Consensus 103 ~vdgIl~DLGvSS~Ql 118 (341)
.+|.|+.-=|..-..+
T Consensus 102 ~~daiFIGGg~~i~~i 117 (187)
T COG2242 102 SPDAIFIGGGGNIEEI 117 (187)
T ss_pred CCCEEEECCCCCHHHH
T ss_conf 9999998798777899
No 18
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.50 E-value=0.0008 Score=45.34 Aligned_cols=93 Identities=14% Similarity=0.249 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH----CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHH
Q ss_conf 33400986886608388888998376882889999974----8909998099899999999852148-852771132788
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQ 94 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~----~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~ 94 (341)
-.|-|.--+++.|+++++..++|-=-|. |+..++|.. .++|+++|++++-...|++++...+ +++.+++++-..
T Consensus 60 s~P~~~a~ml~~L~l~~~~~VLeIGtGs-GY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 138 (214)
T PRK13942 60 SAIHMVAIMCELLDLDEGQKVLEIGTGS-GYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTK 138 (214)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7499999999972799999799967995-299999999747678579997179999999999986376875898567566
Q ss_pred HHHHHHHCCCCEEEEECCCHH
Q ss_conf 987653123324786225207
Q gi|255764511|r 95 LQDYVPDKGVDGVVFDLGVSS 115 (341)
Q Consensus 95 i~~~l~~~~vdgIl~DLGvSS 115 (341)
.+.....+|.|+..-++..
T Consensus 139 --G~~~~apfD~Iiv~aa~~~ 157 (214)
T PRK13942 139 --GYEENAPYDRIYVTAAGPD 157 (214)
T ss_pred --CCCCCCCCCEEEEEECCCC
T ss_conf --7844598127999851765
No 19
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=97.40 E-value=0.0011 Score=44.42 Aligned_cols=87 Identities=18% Similarity=0.279 Sum_probs=66.5
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHCCC
Q ss_conf 86608388888998376882889999974---89099980998999999998521488-527711327889876531233
Q gi|255764511|r 29 IALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGV 104 (341)
Q Consensus 29 l~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~-r~~~~~~~F~~i~~~l~~~~v 104 (341)
...|.|.+|..++|+.-|-||.|.+|.+. .+.|+|.|.++.-+...+++++..+- .+...+..............+
T Consensus 77 ~~~L~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~f 156 (277)
T pfam01189 77 AIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEF 156 (277)
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 99718899998988367888169999987589877998379789999999999975997479996644455743466666
Q ss_pred CEEEEECCCHH
Q ss_conf 24786225207
Q gi|255764511|r 105 DGVVFDLGVSS 115 (341)
Q Consensus 105 dgIl~DLGvSS 115 (341)
|.||.|-=.|.
T Consensus 157 D~vLvDaPCSg 167 (277)
T pfam01189 157 DRILLDAPCSG 167 (277)
T ss_pred CEEEECCCCCC
T ss_conf 57997289889
No 20
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=97.38 E-value=0.0014 Score=43.79 Aligned_cols=104 Identities=14% Similarity=0.256 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH-
Q ss_conf 3400986886608388888998376882889999974---890999809989999999985214--8852771132788-
Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ- 94 (341)
Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~- 94 (341)
+|-=..-++..+++.||..+|.|-.|.|+=|.+++.. .|+|+.+|..++-.+.|++.++.+ .+++.+.|.+..+
T Consensus 87 YpkD~s~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~ 166 (309)
T pfam08704 87 YTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKS 166 (309)
T ss_pred CCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCC
T ss_conf 56009999998098999999983678429999999974888659998447899999999998749875058898520013
Q ss_pred -HHHHHHHCCCCEEEEECCCHHHHHHHHHHCC
Q ss_conf -9876531233247862252078887654073
Q gi|255764511|r 95 -LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 (341)
Q Consensus 95 -i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGF 125 (341)
+.+. ....+|+|++||.=-=.-++...+-+
T Consensus 167 gf~~~-~~~~~D~VfLDlp~PW~ai~~~~~~L 197 (309)
T pfam08704 167 GFDTE-VSNKADAVFLDLPAPWEAIPHAAKAL 197 (309)
T ss_pred CCCCC-CCCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 66644-56643589975899799889999860
No 21
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=97.37 E-value=0.0019 Score=42.97 Aligned_cols=75 Identities=21% Similarity=0.254 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH
Q ss_conf 340098688660838888899837688288999997489099980998999999998521488527711327889
Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 (341)
Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i 95 (341)
-|+-+.-+.+.+.+..|..++|--.|+|--|+.+-+.+.+|.|+|..+++|+.|+++.+..+-.+.+.++...++
T Consensus 33 N~~R~~~i~~~~~~l~G~~ILDVGCGgG~lse~LAr~Ga~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l 107 (233)
T PRK05134 33 NPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGATVTGIDASEENIEVARLHALESGLKIDYRQITAEEL 107 (233)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHH
T ss_conf 699999999751466899899975589711289996799799987998999999998564434511675147665
No 22
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=97.32 E-value=0.0043 Score=40.64 Aligned_cols=99 Identities=22% Similarity=0.295 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHH
Q ss_conf 400986886608-388888998376882889999974--89099980998999999998521--4885277113278898
Q gi|255764511|r 22 PVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQ 96 (341)
Q Consensus 22 PVll~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~ 96 (341)
|-|..|=....+ ..+|.+++|+--|-|+.|..+.+. ..+|+|+|..|.|+..++++.+- ..+++.++++...++
T Consensus 85 ~rl~~Er~ri~~~~~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~- 163 (199)
T pfam02475 85 PRLIGERERIAKLVKEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDV- 163 (199)
T ss_pred CCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-
T ss_conf 4765889999974489988998168865778998640786489998289999999999999809998369992878786-
Q ss_pred HHHHHCCCCEEEEECCCHHHHH-HHHHH
Q ss_conf 7653123324786225207888-76540
Q gi|255764511|r 97 DYVPDKGVDGVVFDLGVSSMQI-DCGDR 123 (341)
Q Consensus 97 ~~l~~~~vdgIl~DLGvSS~Ql-d~~~R 123 (341)
+....+|-|+++|=.++..+ +.+-+
T Consensus 164 --~~~~~~DrvimnlP~~a~~fL~~A~~ 189 (199)
T pfam02475 164 --ILEGVADRVIMNLPKSAHEFLDKALR 189 (199)
T ss_pred --CCCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf --04674009994897316999999999
No 23
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=97.27 E-value=0.0046 Score=40.43 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=60.8
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH
Q ss_conf 334009868866083888889983768828899999748909998099899999999852148-852771132788987
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD 97 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~ 97 (341)
-...|++.+++++.+.++. ++|.=.|-|.-|..+-+...+|+|++..++|+..|++..+..+ +++.|+.+.-.++.+
T Consensus 182 ~~~~l~~~a~~~~~~~~~~-vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~~Na~~N~i~Nv~f~~~~~~~~~~ 259 (353)
T pfam05958 182 VNIKMLEWACEVTQGSKGD-LLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 9999999999986268995-89984688888899986478799996259999999998998699864999728999999
No 24
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=97.27 E-value=0.00082 Score=45.30 Aligned_cols=180 Identities=14% Similarity=0.205 Sum_probs=105.4
Q ss_pred CCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 76432011011607833400986886608388888998376882889999974---890999809989999999985214
Q gi|255764511|r 5 SCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY 81 (341)
Q Consensus 5 ~~~~m~~~~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~ 81 (341)
+-+.|+.-|+. +.|.- --+.+++.+.+.++..++|.-.|.|--+..+.+. .++++|+|.-+++++.|+++++..
T Consensus 19 ~YD~~N~~~S~--G~~~~-WR~~~v~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~ 95 (233)
T pfam01209 19 KYDLMNDVISF--GIHRL-WKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEE 95 (233)
T ss_pred HHHHHHHHHCC--CHHHH-HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 88788878607--34999-9999998618999998998254058899999998499974999969999999999999856
Q ss_pred C-CCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC-----CCCCCCE---ECCCCCCCCCHHHHHHHCC
Q ss_conf 8-85277113278898765312332478622520788876540734-----4566410---1043556841899986222
Q gi|255764511|r 82 K-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPL---DMRMSCSGISASDVVNQAN 152 (341)
Q Consensus 82 ~-~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgpL---DMRmd~~~~tA~eiln~~s 152 (341)
+ .++.+.+++..++. .++..+|.|..-.|+ ..+.|.+++++ .+..|.| |+-. |++.--..+..-|.
T Consensus 96 ~~~~i~~~~~da~~lp--f~d~sfD~v~~~fgl--rn~~d~~~al~E~~RVLKPGG~l~ilefs~-P~~~~~~~~~~~Y~ 170 (233)
T pfam01209 96 GKYNIEFLQGNAEELP--FEDDSFDIVTISFGL--RNFPDYLKVLKEAFRVLKPGGRVVCLEFSK-PENPLLSQAYELYF 170 (233)
T ss_pred CCCCCEEEEECCCCCC--CCCCCCCHHHHHHHH--HCCCCHHHHHHHHHHHCCCCCEEEEEECCC-CCCHHHHHHHHHHH
T ss_conf 9998369982166688--666565731421012--125888999999998727897899997888-87779999999999
Q ss_pred HHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5789989997446302688-999999997521243213799999988
Q gi|255764511|r 153 VKDLTRILGILGEEKQASR-IAHAIVKRRQSAPFQTTQDLSSLIQKT 198 (341)
Q Consensus 153 ~~~L~~i~~~yGee~~a~~-IA~~Iv~~R~~~~i~TT~eL~~iI~~~ 198 (341)
..-+--|=+-++..+.+++ +++.|. .+.+..++.++.+++
T Consensus 171 ~~ilP~ig~~~~~~~~aY~YL~~Si~------~fp~~~~~~~~l~~~ 211 (233)
T pfam01209 171 KYVMPFMGKMFAKSYKSYQYLQESIR------DFPDQKTLASMFEKA 211 (233)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH------HCCCHHHHHHHHHHC
T ss_conf 53599977998499899851999999------879999999999987
No 25
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.26 E-value=0.0023 Score=42.35 Aligned_cols=93 Identities=15% Similarity=0.323 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH----CCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHH
Q ss_conf 3400986886608388888998376882889999974----8909998099899999999852148--852771132788
Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 (341)
Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~----~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~ 94 (341)
.|-|+--+++.|+++++..++|-=-|. ||..++|.. .++|+++|+|++-...|+++++..+ +.+.+.+++-.+
T Consensus 57 ~P~~~a~ml~~L~~~~~~~VLeIGtGs-GY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~ 135 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCC
T ss_conf 799999999970689999899978985-1999999998374771799953699999999999985986330679765565
Q ss_pred HHHHHHHCCCCEEEEECCCHHH
Q ss_conf 9876531233247862252078
Q gi|255764511|r 95 LQDYVPDKGVDGVVFDLGVSSM 116 (341)
Q Consensus 95 i~~~l~~~~vdgIl~DLGvSS~ 116 (341)
.+-....+|.|+..-++...
T Consensus 136 --G~~~~apfD~Iiv~aa~~~i 155 (205)
T PRK13944 136 --GLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred --CCCCCCCCCEEEEEEECCCC
T ss_conf --77434980489998507768
No 26
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0033 Score=41.41 Aligned_cols=97 Identities=21% Similarity=0.203 Sum_probs=76.1
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHH
Q ss_conf 16078334009868866083888889983768828899999748909998099899999999852148-85277113278
Q gi|255764511|r 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFS 93 (341)
Q Consensus 15 ~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~ 93 (341)
|....-..+|++.+++++...++..++|...|.|.-|..+-+...+|+|++..++|+..|++..+..+ ++..|..+.-.
T Consensus 272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae 351 (432)
T COG2265 272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAE 351 (432)
T ss_pred EECHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 33999999999999999743699779993558870135531246579999648999999999999739887799958688
Q ss_pred HHHHHHH-HCCCCEEEEEC
Q ss_conf 8987653-12332478622
Q gi|255764511|r 94 QLQDYVP-DKGVDGVVFDL 111 (341)
Q Consensus 94 ~i~~~l~-~~~vdgIl~DL 111 (341)
++..-.. ....|.|++|-
T Consensus 352 ~~~~~~~~~~~~d~VvvDP 370 (432)
T COG2265 352 EFTPAWWEGYKPDVVVVDP 370 (432)
T ss_pred HHHHHHCCCCCCCEEEECC
T ss_conf 8865100257999899899
No 27
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.24 E-value=0.0052 Score=40.12 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH
Q ss_conf 4009868866083888889983768828899999748909998099899999999852148-852771132788987
Q gi|255764511|r 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD 97 (341)
Q Consensus 22 PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~ 97 (341)
..|++.+++++.+..+. ++|.=-|-|.-|..+-....+|+|++..++|+..|++..+..+ +++.|+.++-.++..
T Consensus 194 e~l~~~a~~~~~~~~~~-vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~NA~~N~i~N~~fi~~~a~~~~~ 269 (363)
T PRK05031 194 EKMLEWALDATKGSKGD-LLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 269 (363)
T ss_pred HHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 99999999976138982-89860586642699886268799995389999999999998699864999658999999
No 28
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.22 E-value=0.0023 Score=42.43 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=63.3
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHC
Q ss_conf 0986886608388888998376882889999974-890999809989999999985214885277113278898765312
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~ 102 (341)
-.+|+++-++..|+..++|--.|.||-+..+.+. +++|+|+|.-+.++..|+++... .+++.|...+.-.+. .++.
T Consensus 40 ~~~~~l~~l~L~~~~kVLDvGCG~GG~a~~LA~~yg~~V~GiDls~~~~~~A~er~~~-~~~v~f~~~d~~~~~--f~d~ 116 (263)
T PTZ00098 40 ATKKILSDIELDANSKVLDIGSGLGGGCKYINEKYGAHTHGIDICEKIVNIAKERNQD-KAKIEFEAKDILKKD--FPEN 116 (263)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC-CCCEEEEECCCCCCC--CCCC
T ss_conf 9999985048899986888688878899999997498799985889999999985512-585489967853677--8867
Q ss_pred CCCEEE
Q ss_conf 332478
Q gi|255764511|r 103 GVDGVV 108 (341)
Q Consensus 103 ~vdgIl 108 (341)
.||.|.
T Consensus 117 sFDvV~ 122 (263)
T PTZ00098 117 NFDLIY 122 (263)
T ss_pred CEEEEE
T ss_conf 455898
No 29
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.0025 Score=42.16 Aligned_cols=96 Identities=17% Similarity=0.279 Sum_probs=75.0
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHH
Q ss_conf 986886608388888998376882889999974---890999809989999999985214--885277113278898765
Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYV 99 (341)
Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l 99 (341)
..-++..+...||..++|+-.|.|-=|.+++.. .|+|+.+|++++-.+.|.++++.+ ++++.+..+... +..
T Consensus 83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~---~~~ 159 (256)
T COG2519 83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR---EGI 159 (256)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCC---CCC
T ss_conf 99999870999887899815680599999999648884599999527899999999998424561378705400---024
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 312332478622520788876540
Q gi|255764511|r 100 PDKGVDGVVFDLGVSSMQIDCGDR 123 (341)
Q Consensus 100 ~~~~vdgIl~DLGvSS~Qld~~~R 123 (341)
.+..||+|++|+.=-=.-++....
T Consensus 160 ~~~~vDav~LDmp~PW~~le~~~~ 183 (256)
T COG2519 160 DEEDVDAVFLDLPDPWNVLEHVSD 183 (256)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 655467799758984899999998
No 30
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.19 E-value=0.0031 Score=41.56 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=54.5
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCH
Q ss_conf 886608388888998376882889999974--8909998099899999999852148-8527711327
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF 92 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F 92 (341)
+|+-|.+.+++++.|---|.|.=|-..... .++|||+|++++++..++++.+.|+ +++.++++..
T Consensus 22 ~LskL~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~~i~g~A 89 (186)
T PRK08287 22 SLSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCGNIDIIPGEA 89 (186)
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99971999999999957887789999999789988999937989999999989972999879993778
No 31
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=97.15 E-value=0.0046 Score=40.48 Aligned_cols=112 Identities=21% Similarity=0.381 Sum_probs=83.8
Q ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCC-C
Q ss_conf 4320110116078334009868866083888889983768828899999748--909998099899999999852148-8
Q gi|255764511|r 7 KTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-E 83 (341)
Q Consensus 7 ~~m~~~~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~-~ 83 (341)
+.|+.-|+. +.|. .--++.++.+.+.+|..++|+-.|.|--+..+-+.. ++++|+|.-+.++..+++++.+.+ .
T Consensus 25 D~~n~~~S~--g~~~-~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~ 101 (238)
T COG2226 25 DLMNDLMSF--GLHR-LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ 101 (238)
T ss_pred HHHCCCCCC--CCHH-HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf 754212037--4039-9999999860789998799966873199999999658844999979999999999874324766
Q ss_pred CEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC
Q ss_conf 527711327889876531233247862252078887654073
Q gi|255764511|r 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 (341)
Q Consensus 84 r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGF 125 (341)
.+.|++++..+|. .++..+|.+....|.= .+.|.++.+
T Consensus 102 ~i~fv~~dAe~LP--f~D~sFD~vt~~fglr--nv~d~~~aL 139 (238)
T COG2226 102 NVEFVVGDAENLP--FPDNSFDAVTISFGLR--NVTDIDKAL 139 (238)
T ss_pred CEEEEEECHHHCC--CCCCCCCEEEEEEHHH--CCCCHHHHH
T ss_conf 3279970565498--8887658898651235--278789999
No 32
>PRK11036 putative metallothionein SmtA; Provisional
Probab=97.14 E-value=0.0073 Score=39.16 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=66.0
Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHCCC
Q ss_conf 68866083888889983768828899999748909998099899999999852148--8527711327889876531233
Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGV 104 (341)
Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l~~~~v 104 (341)
+.+.-|...| -.++|+--|.|.-|..+-+.+.+|.++|..++++..|+++.++.+ .+++++++...++.+.+. ..+
T Consensus 36 ~~l~~l~~~p-lrVLDvG~G~G~~a~~lA~~Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~-~~f 113 (256)
T PRK11036 36 RLLAELGPRP-LRVLDAGGGEGQTAIKMAELGHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE-TPV 113 (256)
T ss_pred HHHHHCCCCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCC-CCC
T ss_conf 9998469999-83998379877989999977997998669999999999998864966127988568998854236-886
Q ss_pred CEEEE
Q ss_conf 24786
Q gi|255764511|r 105 DGVVF 109 (341)
Q Consensus 105 dgIl~ 109 (341)
|.|+.
T Consensus 114 DlVlc 118 (256)
T PRK11036 114 DLILF 118 (256)
T ss_pred CEEEE
T ss_conf 67865
No 33
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=97.09 E-value=0.0035 Score=41.19 Aligned_cols=87 Identities=22% Similarity=0.247 Sum_probs=63.9
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHH
Q ss_conf 00986886608388888998376882889999974--890999809989999999985214--88527711327889876
Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDY 98 (341)
Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~ 98 (341)
.|-.-++..-.++++..++|-..|.|+=.-+-... ...++|+|.|++++..|+++++.+ .+++.+.+.++.++.
T Consensus 15 ~lAa~l~~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~-- 92 (171)
T pfam01170 15 TLARAMVNLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLP-- 92 (171)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--
T ss_conf 999999998589999978868998789999999961358953675879999999999998289984699976665387--
Q ss_pred HHHCCCCEEEEEC
Q ss_conf 5312332478622
Q gi|255764511|r 99 VPDKGVDGVVFDL 111 (341)
Q Consensus 99 l~~~~vdgIl~DL 111 (341)
.....+|.|+.|.
T Consensus 93 ~~~~~~d~Iv~nP 105 (171)
T pfam01170 93 LLNGSVDTIVTDP 105 (171)
T ss_pred CCCCCCEEEEECC
T ss_conf 9878831899889
No 34
>KOG2915 consensus
Probab=97.04 E-value=0.0036 Score=41.13 Aligned_cols=89 Identities=16% Similarity=0.291 Sum_probs=69.6
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHH
Q ss_conf 0986886608388888998376882889999974---890999809989999999985214--88527711327889876
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDY 98 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~ 98 (341)
=..-+++.|+..||.+++.+--|.|+-|.+|... .|+|+-||-+..--..|.+-+++. +++++++|.+-..-.-.
T Consensus 93 Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915 93 DIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred CHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC
T ss_conf 69999998657999789863788634889999863767626999832878999999999737786348999641567735
Q ss_pred HHHCCCCEEEEECC
Q ss_conf 53123324786225
Q gi|255764511|r 99 VPDKGVDGVVFDLG 112 (341)
Q Consensus 99 l~~~~vdgIl~DLG 112 (341)
.+...+|+|++||=
T Consensus 173 ~ks~~aDaVFLDlP 186 (314)
T KOG2915 173 IKSLKADAVFLDLP 186 (314)
T ss_pred CCCCCCCEEEECCC
T ss_conf 31342356997589
No 35
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.03 E-value=0.0036 Score=41.13 Aligned_cols=103 Identities=25% Similarity=0.356 Sum_probs=76.6
Q ss_pred CHHHHHHHHHC---CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHH
Q ss_conf 00986886608---3888889983768828899999748909998099899999999852148--852771132788987
Q gi|255764511|r 23 VLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97 (341)
Q Consensus 23 Vll~Evl~~l~---~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~ 97 (341)
.|.+.+++.|. ...|..++|+-.|.|..|..+...+.+|+|+|.-|.+++.|+++..+.+ +++.|..+....+
T Consensus 47 ~mr~~~l~wl~~~~dl~G~rVLDaGCGtG~la~~LA~~Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gDle~~-- 124 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLSILDAGCGTGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLDGNITFEVGDLESL-- 124 (230)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCC--
T ss_conf 999999997310599789989881878678799999779989998389999999997558627876753896676545--
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 65312332478622520788876540734456641010435568418999862225789989997446
Q gi|255764511|r 98 YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGE 165 (341)
Q Consensus 98 ~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGe 165 (341)
+|.-| -+.+.|+|-.|+.+++...+...+.
T Consensus 125 --------------------------------~G~FD------~Vv~mdvLiHYp~~d~~~~l~~la~ 154 (230)
T PRK07580 125 --------------------------------LGSFD------TVVCLDVLIHYPQEDAERMLAHLAS 154 (230)
T ss_pred --------------------------------CCCCC------CHHHCCCEEECCHHHHHHHHHHHHH
T ss_conf --------------------------------79866------0233371554578899999999972
No 36
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0055 Score=39.94 Aligned_cols=87 Identities=21% Similarity=0.380 Sum_probs=68.7
Q ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHC----CEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHC-C
Q ss_conf 66083888889983768828899999748----9099980998999999998521488-5277113278898765312-3
Q gi|255764511|r 30 ALLNPAPGKVILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDK-G 103 (341)
Q Consensus 30 ~~l~~~~~g~~iD~TlG~GGHS~~iL~~~----~~liaiDrD~~ai~~a~~~l~~~~~-r~~~~~~~F~~i~~~l~~~-~ 103 (341)
..|+|++|..++|+--+-||-|..|.... ..|+|+|.|+.=+....++++..+- ++...+...+.+.+..... .
T Consensus 150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCC
T ss_conf 97199997968880799976999999966899876997449878999999999971998348995133014311345577
Q ss_pred CCEEEEECCCHHH
Q ss_conf 3247862252078
Q gi|255764511|r 104 VDGVVFDLGVSSM 116 (341)
Q Consensus 104 vdgIl~DLGvSS~ 116 (341)
+|-||+|==.|+.
T Consensus 230 fD~iLlDaPCSg~ 242 (355)
T COG0144 230 FDRILLDAPCSGT 242 (355)
T ss_pred CCEEEECCCCCCC
T ss_conf 7859987999877
No 37
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.94 E-value=0.0063 Score=39.58 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=63.2
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf 986886608388888998376882889999974890999809989999999985214885277113278898
Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341)
Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341)
++.+++...+.++..++..--|.|.=|+.+|+...+|+|++.|+.-....++++..+ +++.++++.|-+++
T Consensus 2 i~kIv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~-~n~~ii~~D~L~~~ 72 (169)
T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFD 72 (169)
T ss_pred HHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCC-CCEEEEECCHHCCC
T ss_conf 889988638999497999689702999999973163531637889999999864107-97799957111255
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=96.66 E-value=0.012 Score=37.82 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=67.4
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCEEE
Q ss_conf 8388888998376882889999974---8909998099899999999852148-85277113278898765312332478
Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVV 108 (341)
Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdgIl 108 (341)
.+++|.+++|---|.|-.+...-.. .|+|||+|.-|+++..|+++..+.+ .++.|.++....+. ++...||-|+
T Consensus 70 ~l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LP--l~D~SfDvVi 147 (258)
T PRK11873 70 ELKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP--VADGSVDVII 147 (258)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCCCEEEEE
T ss_conf 57999989994788777599999986999779998599999999999999759975599995553136--8988351998
Q ss_pred EECCCHHHHHHHHHHCC
Q ss_conf 62252078887654073
Q gi|255764511|r 109 FDLGVSSMQIDCGDRGF 125 (341)
Q Consensus 109 ~DLGvSS~Qld~~~RGF 125 (341)
-++.+.- +.|+.+-|
T Consensus 148 SncVlnl--~pDk~~vl 162 (258)
T PRK11873 148 SNCVINL--SPDKERVF 162 (258)
T ss_pred ECCEEEC--CCCHHHHH
T ss_conf 8246760--79879999
No 39
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=96.64 E-value=0.014 Score=37.26 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341)
+.|..++++++.+++.++..+|+.--|.|.=|..+++...+|+|++.|+..+..-++++... .++.++++.|-+++
T Consensus 14 ~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~~~-~~~~ii~~D~l~~d 89 (258)
T pfam00398 14 TNKKVINRIVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLALH-PNVEVVHQDFLKFS 89 (258)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC-CCEEEEECCHHCCC
T ss_conf 89999999999708999997999799623999999961694799954477999999864428-97799966301057
No 40
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.62 E-value=0.016 Score=36.88 Aligned_cols=110 Identities=14% Similarity=0.205 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf 833400986886608388888998376882889999974--890999809989999999985214885277113278898
Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341)
Q Consensus 19 ~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341)
.|..=-..+.|+.+.+.++..++|.-.|.|--|..+.+. +++|+|+|-.+++|..|+++. ..+.|..+...++
T Consensus 14 ~~r~rp~~DLl~~l~~~~~~~vlDlGCG~G~~t~~l~~r~p~a~v~GiD~S~~Ml~~Ar~~~----~~~~f~~~D~~~~- 88 (252)
T PRK01683 14 AERTRPAVELLARVPLENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMLAEARQAL----PDCQFVEADIRNW- 88 (252)
T ss_pred HHHHCHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC----CCCEEEECCHHCC-
T ss_conf 77646399998418888999899937749899999999779987999989899999999758----9983872504207-
Q ss_pred HHHHHCCCCEEEEECCCHHHHH-HHHHHCC-----CCCCCCCEECCCC
Q ss_conf 7653123324786225207888-7654073-----4456641010435
Q gi|255764511|r 97 DYVPDKGVDGVVFDLGVSSMQI-DCGDRGF-----SFQKSGPLDMRMS 138 (341)
Q Consensus 97 ~~l~~~~vdgIl~DLGvSS~Ql-d~~~RGF-----Sf~~dgpLDMRmd 138 (341)
.....+|.|+-+- ..|. .+..+-| ..+..|.|=.-|-
T Consensus 89 --~~~~~~D~ifSNa---alhW~~d~~~~~~~~~~~L~PGG~la~Q~p 131 (252)
T PRK01683 89 --QPEQALDLIYANA---SLQWLPDHYELFPHLVSLLAPQGVLAVQMP 131 (252)
T ss_pred --CCCCCCCEEEEEE---EHHHCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf --8767878895610---045078779999999982487879999889
No 41
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=96.59 E-value=0.013 Score=37.64 Aligned_cols=80 Identities=18% Similarity=0.208 Sum_probs=59.9
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 8660838888899837688288999997489--09998099899999999852148-85277113278898765312332
Q gi|255764511|r 29 IALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVD 105 (341)
Q Consensus 29 l~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vd 105 (341)
++.+...+++.++|-=.|.|--+..+.+.++ +|+|+|.|+.|+..|+++++..+ +++.+++++..+ .+....+|
T Consensus 24 l~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~---~~~~~~fD 100 (170)
T pfam05175 24 LSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYS---AVEPGKFD 100 (170)
T ss_pred HHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC---CCCCCCEE
T ss_conf 970897789949997764829899999978986798515449999999999998099848999744666---57788660
Q ss_pred EEEEEC
Q ss_conf 478622
Q gi|255764511|r 106 GVVFDL 111 (341)
Q Consensus 106 gIl~DL 111 (341)
-|+.+-
T Consensus 101 ~IvsNP 106 (170)
T pfam05175 101 LIISNP 106 (170)
T ss_pred EEEECC
T ss_conf 899897
No 42
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=96.48 E-value=0.024 Score=35.77 Aligned_cols=93 Identities=13% Similarity=0.154 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH----CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHH
Q ss_conf 33400986886608388888998376882889999974----8909998099899999999852148-852771132788
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQ 94 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~----~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~ 94 (341)
-.|-|+--.++.+.++++..+++---|. |+..|+|.. .|.|+++|+|++-...|+++|+..+ +++.++++.=..
T Consensus 59 SqP~iVA~MlElL~l~pg~rVLEIGTGS-GYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~ 137 (317)
T PRK13943 59 SQPSLMALFMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYY 137 (317)
T ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 1689999999971789998689965774-389999999848787599998679999999999997799864999799888
Q ss_pred HHHHHHHCCCCEEEEECCCHH
Q ss_conf 987653123324786225207
Q gi|255764511|r 95 LQDYVPDKGVDGVVFDLGVSS 115 (341)
Q Consensus 95 i~~~l~~~~vdgIl~DLGvSS 115 (341)
.+-..-.+|.|+.--|+..
T Consensus 138 --G~pe~APYD~IIVTAaa~~ 156 (317)
T PRK13943 138 --GVPEFSPYDVIFVTVGVDE 156 (317)
T ss_pred --CCCCCCCCCEEEEEECCCC
T ss_conf --8866799778999852764
No 43
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.40 E-value=0.097 Score=31.89 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=49.8
Q ss_pred HHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HH
Q ss_conf 986886608-388888998376882889999974---89099980998999999998521488527711327889---87
Q gi|255764511|r 25 LEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QD 97 (341)
Q Consensus 25 l~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~ 97 (341)
|.|+-+-+. ..++..+||.-..-||-|+.+.+. .|.|+|+|..|-. +- ..+.+++++|.+- +.
T Consensus 39 L~EId~K~~l~~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~---------pi-~gv~~i~gDi~~~~~~~~ 108 (209)
T PRK11188 39 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD---------PI-VGVDFLQGDFRDELVLKA 108 (209)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC---------CC-CCCEEECCCCCCHHHHHH
T ss_conf 99999885645789989980689975789999973999739998653045---------37-896764034458899999
Q ss_pred HH---HHCCCCEEEEE
Q ss_conf 65---31233247862
Q gi|255764511|r 98 YV---PDKGVDGVVFD 110 (341)
Q Consensus 98 ~l---~~~~vdgIl~D 110 (341)
++ ....+|-||-|
T Consensus 109 i~~~~~~~~~DvVlSD 124 (209)
T PRK11188 109 LLERVGDSKVDVVMSD 124 (209)
T ss_pred HHHHHCCCCCCEEECC
T ss_conf 9998589873089666
No 44
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.37 E-value=0.068 Score=32.89 Aligned_cols=85 Identities=12% Similarity=0.158 Sum_probs=66.2
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCE
Q ss_conf 608388888998376882889999974---8909998099899999999852148-852771132788987653123324
Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDG 106 (341)
Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdg 106 (341)
.++|+||..++|.--.-||-|..|... .|.|+|.|.++.-+....++++.++ .++...+..=..+...++ ..||.
T Consensus 108 ~~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~-~~FD~ 186 (471)
T PRK11933 108 FADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALP-EMFDA 186 (471)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCC-CCCCE
T ss_conf 24889999899957785489999999758996699983889999999999997199847999358667403230-10667
Q ss_pred EEEECCCHHH
Q ss_conf 7862252078
Q gi|255764511|r 107 VVFDLGVSSM 116 (341)
Q Consensus 107 Il~DLGvSS~ 116 (341)
||.|-=.|..
T Consensus 187 ILvDaPCSG~ 196 (471)
T PRK11933 187 ILLDAPCSGE 196 (471)
T ss_pred EEECCCCCCC
T ss_conf 9987888887
No 45
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.035 Score=34.78 Aligned_cols=104 Identities=15% Similarity=0.288 Sum_probs=80.2
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCCHHHHHH
Q ss_conf 33400986886608388888998376882889999974-89099980998999999998521488-52771132788987
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQD 97 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~-r~~~~~~~F~~i~~ 97 (341)
-.|-|+--+++.|.++++..+++---|. |+..|+|.. .++|+.+++++.-...|+++|+..+- ++.+.++.=+. .
T Consensus 56 s~P~~vA~m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~--G 132 (209)
T COG2518 56 SAPHMVARMLQLLELKPGDRVLEIGTGS-GYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK--G 132 (209)
T ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCC-HHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCC--C
T ss_conf 5747999999974899998688877783-099999999748499999719999999999997698734999788556--8
Q ss_pred HHHHCCCCEEEEECCCHHH------HHHHHHHCCC
Q ss_conf 6531233247862252078------8876540734
Q gi|255764511|r 98 YVPDKGVDGVVFDLGVSSM------QIDCGDRGFS 126 (341)
Q Consensus 98 ~l~~~~vdgIl~DLGvSS~------Qld~~~RGFS 126 (341)
+-....+|.|+..-++... ||....|-.-
T Consensus 133 ~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~ 167 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVI 167 (209)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHCCCCCEEEE
T ss_conf 87779847899950357799899985065988999
No 46
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=96.35 E-value=0.029 Score=35.31 Aligned_cols=95 Identities=19% Similarity=0.292 Sum_probs=75.0
Q ss_pred HHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHH--C-CEEEEECCCHHHHHHHHHHHHHC-C-CCEEEECCCHH----
Q ss_conf 098688660838888-8998376882889999974--8-90999809989999999985214-8-85277113278----
Q gi|255764511|r 24 LLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKM--G-SNVIALDRDPFAVSCGQETMRDY-K-EQFSLFQATFS---- 93 (341)
Q Consensus 24 ll~Evl~~l~~~~~g-~~iD~TlG~GGHS~~iL~~--~-~~liaiDrD~~ai~~a~~~l~~~-~-~r~~~~~~~F~---- 93 (341)
+--=+|+.|.++++. +++|-=-|.|+=|-..... . ++||||||+++++...+++++.| . +++.++.+.+.
T Consensus 7 vR~l~L~~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~~~~ 86 (135)
T TIGR02469 7 VRALTLAKLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPEELL 86 (135)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 99999987178999946889605748389999973598607999853768987999999982899963256355684333
Q ss_pred --HHHHHH-HHCCCCEEEEECCCHHHHHHH
Q ss_conf --898765-312332478622520788876
Q gi|255764511|r 94 --QLQDYV-PDKGVDGVVFDLGVSSMQIDC 120 (341)
Q Consensus 94 --~i~~~l-~~~~vdgIl~DLGvSS~Qld~ 120 (341)
+....+ ....+|.|+. |=|+-|++.
T Consensus 87 ~~~~~~~~~~~~~~Da~fv--GGs~~~~~~ 114 (135)
T TIGR02469 87 NSDAPEDSAKLPEPDAVFV--GGSGGKLEE 114 (135)
T ss_pred CCCCCHHHCCCCCCCEEEE--CCCCHHHHH
T ss_conf 6777710058874688888--389717899
No 47
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=96.31 E-value=0.04 Score=34.35 Aligned_cols=155 Identities=20% Similarity=0.262 Sum_probs=97.1
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHH
Q ss_conf 009868866083888889983768828899999748--909998099899999999852148-85277113278898765
Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYV 99 (341)
Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l 99 (341)
.|++.++..+...+ -.++|.-.|.|-=+-++++.. .+++|+|.+++|+..|+++.+..+ .++.+++++.-+ .+
T Consensus 75 ~Lve~~l~~~~~~~-~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~---~~ 150 (251)
T TIGR03534 75 ELVEAALERLKKGP-LKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFE---PL 150 (251)
T ss_pred HHHHHHHHHHCCCC-CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHH---CC
T ss_conf 99999999731489-869995567169999999967997899998987999999999998099826865131432---15
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 31233247862252078887654073445664101043556841899986222578998999744630268899999999
Q gi|255764511|r 100 PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 (341)
Q Consensus 100 ~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~ 179 (341)
....+|.|+.+-=|
T Consensus 151 ~~~~fDlIvsNPPY------------------------------------------------------------------ 164 (251)
T TIGR03534 151 PGGKFDLIVSNPPY------------------------------------------------------------------ 164 (251)
T ss_pred CCCCCCEEEECCCC------------------------------------------------------------------
T ss_conf 68986689978998------------------------------------------------------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 75212432137999999887643127712578888887665134057899999988520244533899872550238999
Q gi|255764511|r 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 (341)
Q Consensus 180 R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK 259 (341)
..+.+...+-.. .....|.. ||-- =++=|+..+..+..+.++|+|||.+++=-=++-. ..|+
T Consensus 165 ------I~~~e~~~l~~e------V~~~EP~~----AL~g-g~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~~q~-~~v~ 226 (251)
T TIGR03534 165 ------IPEADIHLLDPE------VRFHEPKL----ALFA-GEDGLDFYRRIIAQAPRYLKPGGWLLLEIGYDQG-EAVR 226 (251)
T ss_pred ------CCHHHHHHCCCH------HCCCCHHH----HHCC-CCCHHHHHHHHHHHHHHHCCCCCEEEEEECHHHH-HHHH
T ss_conf ------874566632860------10267299----9717-9846999999999999853679889999683789-9999
Q ss_pred HHHHHH
Q ss_conf 999864
Q gi|255764511|r 260 KFFASR 265 (341)
Q Consensus 260 ~ff~~~ 265 (341)
++++..
T Consensus 227 ~l~~~~ 232 (251)
T TIGR03534 227 ALFEAA 232 (251)
T ss_pred HHHHHC
T ss_conf 999968
No 48
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.061 Score=33.18 Aligned_cols=76 Identities=14% Similarity=0.263 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341)
|.+-.++.+++...+.++..++.---|-|.=|+.+++...+|+|+..|+.-+..-++++.. .+++.++++.+-.++
T Consensus 14 ~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~-~~n~~vi~~DaLk~d 89 (259)
T COG0030 14 IDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP-YDNLTVINGDALKFD 89 (259)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCC-CCCEEEEECCHHCCC
T ss_conf 4787999999855789998699978987788999996069579999688999999975065-665599947242475
No 49
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.12 E-value=0.075 Score=32.61 Aligned_cols=151 Identities=25% Similarity=0.373 Sum_probs=96.5
Q ss_pred HHHHHHH-HHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCH-HHHHH
Q ss_conf 0986886-608388888998376882889999974--890999809989999999985214--88527711327-88987
Q gi|255764511|r 24 LLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATF-SQLQD 97 (341)
Q Consensus 24 ll~Evl~-~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F-~~i~~ 97 (341)
|+.+.+. ++...+...++|.--|.|-=+-++... ..+++|+|.+++|+..|+++.+.+ .+|+.++++++ +.+
T Consensus 108 Lv~~~l~~~~~~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~~~~-- 185 (284)
T TIGR03533 108 LIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-- 185 (284)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHC--
T ss_conf 999999998423677715552168079999999878998799998999999999999986085433688835143314--
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 65312332478622520788876540734456641010435568418999862225789989997446302688999999
Q gi|255764511|r 98 YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV 177 (341)
Q Consensus 98 ~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv 177 (341)
...++|-|+
T Consensus 186 --~~~~fDlIV--------------------------------------------------------------------- 194 (284)
T TIGR03533 186 --PGRKYDLIV--------------------------------------------------------------------- 194 (284)
T ss_pred --CCCCCCEEE---------------------------------------------------------------------
T ss_conf --577778799---------------------------------------------------------------------
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHH
Q ss_conf 99752124321379999998876431277125788888876651340578999999885202445338998725502389
Q gi|255764511|r 178 KRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 (341)
Q Consensus 178 ~~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRi 257 (341)
.+=|+..+.+...+-.. +. ..|.. ||= .=++=|+..++.+..+.++|+|||.+++=-=|+-| -
T Consensus 195 ---SNPPYI~~~e~~~l~~e-v~------~EP~~----AL~-gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEiG~~Q~--~ 257 (284)
T TIGR03533 195 ---SNPPYVDAEDMADLPAE-YH------HEPEL----ALA-SGEDGLDLVRRILAEAADHLNENGVLVVEVGNSME--A 257 (284)
T ss_pred ---ECCCCCCHHHHHHCCHH-HC------CCCHH----HHC-CCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH--H
T ss_conf ---77997884655449764-11------58699----875-89558799999999889842569789999797889--9
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|255764511|r 258 VKKFFAS 264 (341)
Q Consensus 258 VK~ff~~ 264 (341)
|+..|+.
T Consensus 258 ~~~~~~~ 264 (284)
T TIGR03533 258 LEEAYPD 264 (284)
T ss_pred HHHHCCC
T ss_conf 9986689
No 50
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.071 Score=32.75 Aligned_cols=101 Identities=26% Similarity=0.271 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC-CCEEEECC-CHHHHHHHH
Q ss_conf 098688660838888899837688288999997489--09998099899999999852148-85277113-278898765
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK-EQFSLFQA-TFSQLQDYV 99 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~-~F~~i~~~l 99 (341)
|++.++..+..... .++|---|.|-=+.++....+ .|+|.|..|+|++.|+++.+..+ .++.++++ .|+.+..
T Consensus 99 Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~-- 175 (280)
T COG2890 99 LVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG-- 175 (280)
T ss_pred HHHHHHHHHHCCCC-CEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCC--
T ss_conf 99999975111589-189965883199999996189887999989999999999999982897479874003334688--
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 3123324786225207888765407344566410104355
Q gi|255764511|r 100 PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 (341)
Q Consensus 100 ~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~ 139 (341)
.+|.|+++==|=+.. .....|-+++.+|
T Consensus 176 ---~fDlIVsNPPYip~~---------~~~~~~~~~~~EP 203 (280)
T COG2890 176 ---KFDLIVSNPPYIPAE---------DPELLPEVVRYEP 203 (280)
T ss_pred ---CCCEEEECCCCCCCC---------CCCCCCCCCCCCH
T ss_conf ---857799689988885---------2113742135897
No 51
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.03 E-value=0.032 Score=34.97 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=53.6
Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 68866083888889983768828899999748909998099899999999852148-85277113278898765312332
Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVD 105 (341)
Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vd 105 (341)
|+++.....+.|..+|--.|.|.+|..+-..+-.|.|+|.-+.||..++++-...+ +++.. .-.++.....+..+|
T Consensus 21 ~~~~~~~~~~~g~~LDlgcG~Grna~~La~~G~~VtavD~s~~al~~~~~~a~~~~l~~v~~---~~~Dl~~~~~~~~yD 97 (198)
T PRK11207 21 EVLEAVKVVKPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPMSIANLERIKAAENLDNLHT---RVVDLNNLTFDGEYD 97 (198)
T ss_pred HHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEE---EEECCCCCCCCCCCC
T ss_conf 99987335899747772478878699998689859999799999999999998759982465---620312388777705
Q ss_pred EEE
Q ss_conf 478
Q gi|255764511|r 106 GVV 108 (341)
Q Consensus 106 gIl 108 (341)
.|+
T Consensus 98 lIl 100 (198)
T PRK11207 98 FIL 100 (198)
T ss_pred EEE
T ss_conf 897
No 52
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.96 E-value=0.079 Score=32.48 Aligned_cols=153 Identities=27% Similarity=0.383 Sum_probs=93.5
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCH-HHHHHH
Q ss_conf 009868866083888889983768828899999748--909998099899999999852148-8527711327-889876
Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF-SQLQDY 98 (341)
Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F-~~i~~~ 98 (341)
.|++.+++.+...+ ..++|.-.|.|-=+-+++... .+++|+|..++|+..|+++.+.++ +++.|+++++ +.+
T Consensus 97 ~LVe~~l~~~~~~~-~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~~~~~--- 172 (277)
T PRK09328 97 CLVEQALARLPEQP-CRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDWFSAL--- 172 (277)
T ss_pred HHHHHHHHHCCCCC-CEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHC---
T ss_conf 99999999645378-81899545569999999986779899996489999999999999809886999944752113---
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 53123324786225207888765407344566410104355684189998622257899899974463026889999999
Q gi|255764511|r 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 (341)
Q Consensus 99 l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~ 178 (341)
...++|.|+.+-=
T Consensus 173 -~~~~fDlIVSNPP------------------------------------------------------------------ 185 (277)
T PRK09328 173 -SGQQFAMIVSNPP------------------------------------------------------------------ 185 (277)
T ss_pred -CCCCCCEEEECCC------------------------------------------------------------------
T ss_conf -7877788997899------------------------------------------------------------------
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHH
Q ss_conf 97521243213799999988764312771257888888766513405789999998852024453389987255023899
Q gi|255764511|r 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLV 258 (341)
Q Consensus 179 ~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiV 258 (341)
...+.+. ++....+ +.-|.. || ..=++-|+..+..+..+.++|+|||.+++= .+.---..|
T Consensus 186 ------YI~~~~~-~~~~~~v------~~EP~~----AL-~gg~dGl~~~~~ii~~a~~~L~~~G~l~~E-ig~~Q~~~v 246 (277)
T PRK09328 186 ------YIDAQDP-HLQQGDV------RFEPLS----AL-VAADNGMADLAHIIEQARQYLVPGGWLLLE-HGWQQGEAV 246 (277)
T ss_pred ------CCCCCHH-HHCCHHC------CCCCHH----HH-HCCCCHHHHHHHHHHHHHHHCCCCCEEEEE-ECHHHHHHH
T ss_conf ------8770003-4382421------668389----98-179758999999999999844669899999-681589999
Q ss_pred HHHHHHH
Q ss_conf 9999864
Q gi|255764511|r 259 KKFFASR 265 (341)
Q Consensus 259 K~ff~~~ 265 (341)
+++|+..
T Consensus 247 ~~l~~~~ 253 (277)
T PRK09328 247 RQLFIRA 253 (277)
T ss_pred HHHHHHC
T ss_conf 9999967
No 53
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=95.95 E-value=0.11 Score=31.64 Aligned_cols=99 Identities=15% Similarity=0.031 Sum_probs=66.1
Q ss_pred CCCCCCCCHH--HHHHHHHC----CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCC
Q ss_conf 6078334009--86886608----388888998376882889999974---890999809989999999985214--885
Q gi|255764511|r 16 TIGDHVPVLL--EKVIALLN----PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQ 84 (341)
Q Consensus 16 ~~~~H~PVll--~Evl~~l~----~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r 84 (341)
+...+.|.|. .|+-.+|. ......++.---+.|--+..+.+. +|+|+.+|.|++....|++.++.. .+|
T Consensus 18 t~~~~~~~m~i~~~~g~~L~~l~~~~~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~ 97 (204)
T pfam01596 18 TAKLPLSQMQISPEEGQFLSMLVKLVGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADK 97 (204)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCE
T ss_conf 98379976614999999999999975987899983432599999998489996899998048999999999997798744
Q ss_pred EEEECCCHHHHH-HHHHH---CCCCEEEEECCCH
Q ss_conf 277113278898-76531---2332478622520
Q gi|255764511|r 85 FSLFQATFSQLQ-DYVPD---KGVDGVVFDLGVS 114 (341)
Q Consensus 85 ~~~~~~~F~~i~-~~l~~---~~vdgIl~DLGvS 114 (341)
+.++.++-.+.- ++..+ ..||.|+.|--=.
T Consensus 98 I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDadK~ 131 (204)
T pfam01596 98 IEFRVGDALKTLEQLVEDKPLGEFDFAFVDADKS 131 (204)
T ss_pred EEEEEECHHHHHHHHHHCCCCCCCCEEEEECCHH
T ss_conf 7999874999999998447777643899818887
No 54
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=95.93 E-value=0.029 Score=35.28 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHH-HHH
Q ss_conf 34009868866083888889983768828899999748909998099899999999852148-8527711327889-876
Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL-QDY 98 (341)
Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i-~~~ 98 (341)
.-+|+++++++|+.+....+||+=-|=|--|.-+=+.--.++|+|.=++++..|+++-+..+ .++.|++++-... .+.
T Consensus 279 ~~~l~~~a~~~l~Lqg~e~V~DayCG~GtftLpLA~qak~v~G~E~v~e~v~~a~~NAe~Ng~~N~~F~~g~~E~~~p~~ 358 (434)
T TIGR00479 279 TEKLVDRALEALELQGEEKVVDAYCGVGTFTLPLAKQAKSVVGVEVVPESVEDAKRNAELNGIANVEFLAGTLETVLPKQ 358 (434)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 79999999999715986557863157552004444012188887143767899988888603532013331232110144
Q ss_pred HHH-CCCCEEEEE
Q ss_conf 531-233247862
Q gi|255764511|r 99 VPD-KGVDGVVFD 110 (341)
Q Consensus 99 l~~-~~vdgIl~D 110 (341)
.++ ..+|-||+|
T Consensus 359 ~~e~~~~D~~llD 371 (434)
T TIGR00479 359 PWEGISPDVVLLD 371 (434)
T ss_pred CCCCCCCCEEEEC
T ss_conf 2226778988888
No 55
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.92 E-value=0.079 Score=32.48 Aligned_cols=88 Identities=20% Similarity=0.222 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHCC---------------------CCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHH
Q ss_conf 4009868866083---------------------88888998376882889999974--890999809989999999985
Q gi|255764511|r 22 PVLLEKVIALLNP---------------------APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78 (341)
Q Consensus 22 PVll~Evl~~l~~---------------------~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l 78 (341)
-+|++.+++.+.. ...-.++|---|.|-=+-+++.. ..+++|+|.-++|+..|++..
T Consensus 100 E~LVE~vL~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~vAk~Na 179 (503)
T PRK01544 100 EVLVDVVFQHSQCHSRESGNPEKKQLDSVSKNRNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA 179 (503)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 99999999986420222345310011000012345577278846667999999998678998999989899999999999
Q ss_pred HHC--CCCEEEECCC-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 214--8852771132-7889876531233247862252
Q gi|255764511|r 79 RDY--KEQFSLFQAT-FSQLQDYVPDKGVDGVVFDLGV 113 (341)
Q Consensus 79 ~~~--~~r~~~~~~~-F~~i~~~l~~~~vdgIl~DLGv 113 (341)
..+ .+|+.|++++ |+.+. ..++|.|+-+==|
T Consensus 180 ~~~~v~~ri~fi~sdwfe~l~----~~kFDlIVSNPPY 213 (503)
T PRK01544 180 IKYEVTDRIQIIHSNWFENIG----KQKFDFIVSNPPY 213 (503)
T ss_pred HHCCCCCCEEEEECCCHHCCC----CCCCCEEEECCCC
T ss_conf 980882017999655310158----8872479838998
No 56
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=95.90 E-value=0.093 Score=32.01 Aligned_cols=89 Identities=13% Similarity=0.236 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH--H
Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898--7
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ--D 97 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~--~ 97 (341)
..+-.++.+++..++.++..++.---|.|.=|.++++.+.+|+|++.|+..+..-+ +. +++.++++.|-.++ +
T Consensus 23 ~d~~ii~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~----~~-~~~~ii~~D~L~~~~~~ 97 (267)
T PRK00274 23 IDENIIDKIVRAADLQPGDRVLEIGPGLGALTEPLLERAAKVTAIEIDRDLAPILR----ET-DNLTIIEGDALKVDLEE 97 (267)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHH----HC-CCEEEEECHHHHCCHHH
T ss_conf 89899999999608999990799638888899999962680588636889999985----04-78699965066478677
Q ss_pred HHHHCCCCEEEEECCCH
Q ss_conf 65312332478622520
Q gi|255764511|r 98 YVPDKGVDGVVFDLGVS 114 (341)
Q Consensus 98 ~l~~~~vdgIl~DLGvS 114 (341)
+ ...+.--|+.+|=|+
T Consensus 98 ~-~~~~~~~vvgNLPY~ 113 (267)
T PRK00274 98 L-AEGQPLKVVANLPYN 113 (267)
T ss_pred H-CCCCCEEEEECCCCH
T ss_conf 4-567872799558830
No 57
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.88 E-value=0.079 Score=32.46 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHH
Q ss_conf 400986886608-38888899837688288999997489-099980998999999998521--48852771132788987
Q gi|255764511|r 22 PVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQD 97 (341)
Q Consensus 22 PVll~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~ 97 (341)
|=|..|=.-.+. ..+|.+++|.=-|-|..|-.+.+++. .|+|+|..|.|+.+.++.++- ..+++..+++.-.++..
T Consensus 173 prl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 173 PRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 87447899998630699889983578654012466547863999945989999999999855765515679664888502
Q ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHCCCCC
Q ss_conf 6531233247862252078887654073445
Q gi|255764511|r 98 YVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ 128 (341)
Q Consensus 98 ~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~ 128 (341)
.+ ..+|-|++.+=.|++++.......+-.
T Consensus 253 ~~--~~aDrIim~~p~~a~~fl~~A~~~~k~ 281 (341)
T COG2520 253 EL--GVADRIIMGLPKSAHEFLPLALELLKD 281 (341)
T ss_pred CC--CCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 04--667889838987202338999998514
No 58
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.86 E-value=0.11 Score=31.65 Aligned_cols=142 Identities=22% Similarity=0.275 Sum_probs=88.8
Q ss_pred HHHHHHH-HHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHH
Q ss_conf 0986886-6083888889983768828899999748--90999809989999999985214--88527711327889876
Q gi|255764511|r 24 LLEKVIA-LLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDY 98 (341)
Q Consensus 24 ll~Evl~-~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~ 98 (341)
|+.+.+. ++.......++|.--|.|-=+-++.... .+++|+|.+++|+..|+++.+.+ .+|+.+++++.-+ .
T Consensus 120 Li~~~l~~~~~~~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~~---~ 196 (307)
T PRK11805 120 LIEDGFAPWLEDEQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA---A 196 (307)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH---C
T ss_conf 9999999973357887277742782799999998789988999858999999999999983887738998040221---2
Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 53123324786225207888765407344566410104355684189998622257899899974463026889999999
Q gi|255764511|r 99 VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 (341)
Q Consensus 99 l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~ 178 (341)
++...+|.|+-+ |
T Consensus 197 l~~~~fDlIvSN----------------------------P--------------------------------------- 209 (307)
T PRK11805 197 LPGRRYDLIVSN----------------------------P--------------------------------------- 209 (307)
T ss_pred CCCCCCCEEEEC----------------------------C---------------------------------------
T ss_conf 688750779967----------------------------9---------------------------------------
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 97521243213799999988764312771257888888766513405789999998852024453389987255
Q gi|255764511|r 179 RRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHS 252 (341)
Q Consensus 179 ~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHS 252 (341)
|+..+.+...+=.. +. .-|.. || ..=.+-|+..++.+..++..|+|||.|++=-=||
T Consensus 210 -----PYI~~~~~~~L~~e-v~------~EP~~----AL-~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG~~ 266 (307)
T PRK11805 210 -----PYVDAEDMADLPAE-YR------HEPEL----AL-AAGDDGLDLVRRILAEAADYLTEDGVLVCEVGNS 266 (307)
T ss_pred -----CCCCHHHHHHCCHH-HC------CCCHH----HH-CCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf -----97885656339775-31------58788----87-6892488999999998897447696899997978
No 59
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=95.83 E-value=0.12 Score=31.19 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHC----CCCCCEEEECCCCCCHHHHH-HHHH---CCEEEEECCCHHHHHHHHHHHHHCC--CCEEEEC
Q ss_conf 33400986886608----38888899837688288999-9974---8909998099899999999852148--8527711
Q gi|255764511|r 20 HVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRS-FCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 (341)
Q Consensus 20 H~PVll~Evl~~l~----~~~~g~~iD~TlG~GGHS~~-iL~~---~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~ 89 (341)
..|++..|.-.+|. ....+.++.-.-+. |+|.. +... .++++.+|+||+....|++.+++++ +++.++.
T Consensus 39 ~~pi~~~e~g~~L~~L~~~~~~k~iLEiGT~~-GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~ 117 (219)
T COG4122 39 GVPIIDPETGALLRLLARLSGPKRILEIGTAI-GYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL 117 (219)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 89987814899999999734986499963523-79999999638889769997079899999999999759765289883
Q ss_pred C-CHH-HHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 3-278-898765312332478622520788876540734456
Q gi|255764511|r 90 A-TFS-QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQK 129 (341)
Q Consensus 90 ~-~F~-~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~ 129 (341)
+ .-- .+.. .....+|.|+.|-.=+.+.= .-++.-+..+
T Consensus 118 ~gdal~~l~~-~~~~~fDliFIDadK~~yp~-~le~~~~lLr 157 (219)
T COG4122 118 GGDALDVLSR-LLDGSFDLVFIDADKADYPE-YLERALPLLR 157 (219)
T ss_pred CCCHHHHHHH-CCCCCCCEEEEECCHHHCHH-HHHHHHHHHC
T ss_conf 5747999973-34788568998378435999-9999999737
No 60
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=95.83 E-value=0.094 Score=31.98 Aligned_cols=72 Identities=18% Similarity=0.312 Sum_probs=62.6
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHH
Q ss_conf 0986886608388888998376882889999974-890999809989999999985214--88527711327889
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i 95 (341)
+++.+++-+.+++|..++|--.|-||=+..+.+. +++|.|+..-++-..+++++.++. .+++.+...+|.++
T Consensus 50 Kl~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyrd~ 124 (273)
T pfam02353 50 KLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYRDF 124 (273)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHHHC
T ss_conf 999999865889999899978880899999998479518999797899999999998708743212000626547
No 61
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=95.82 E-value=0.015 Score=37.18 Aligned_cols=77 Identities=19% Similarity=0.377 Sum_probs=55.2
Q ss_pred EECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHH
Q ss_conf 98376882889999974-89099980998999999998521488527711327889876531233247862252078887
Q gi|255764511|r 41 LDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 (341)
Q Consensus 41 iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld 119 (341)
+|.=-|.|.++..+.+. +.+++|+|..+.++..|+++... .++.+++.++.++. +++..+|.|+. -.+-++++
T Consensus 1 LDiGcG~G~~~~~l~~~~~~~v~giD~s~~~i~~a~~~~~~--~~~~~~~~d~~~~~--~~~~~fD~I~~--~~~l~~~~ 74 (95)
T pfam08241 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQE--DGLTFVVGDAEDLP--FPDESFDVVVS--SLVLHHLP 74 (95)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC--CCCEEEEECCCCCC--CCCCCCCEEEE--CCCHHHCC
T ss_conf 96462499999999845799999994978998776631026--69479980332467--55456859998--33066468
Q ss_pred HHHH
Q ss_conf 6540
Q gi|255764511|r 120 CGDR 123 (341)
Q Consensus 120 ~~~R 123 (341)
+++.
T Consensus 75 ~~~~ 78 (95)
T pfam08241 75 DPER 78 (95)
T ss_pred CHHH
T ss_conf 9999
No 62
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=95.82 E-value=0.078 Score=32.52 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=55.2
Q ss_pred HCCCCCC--EEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH----------HCCCCEEEECCCHHHHHHHH
Q ss_conf 0838888--89983768828899999748909998099899999999852----------14885277113278898765
Q gi|255764511|r 32 LNPAPGK--VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR----------DYKEQFSLFQATFSQLQDYV 99 (341)
Q Consensus 32 l~~~~~g--~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~----------~~~~r~~~~~~~F~~i~~~l 99 (341)
+..+++. .++|||-|.|..|--+...+++|+.+.|.|..-..-+.-++ ....|+++++++-.+.-..
T Consensus 69 vG~k~~~~p~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~- 147 (235)
T pfam04445 69 VGIKGGYLPTVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEP- 147 (235)
T ss_pred HCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHH-
T ss_conf 6678899983898787757889999818996999978899999999999998748155799996289983887999752-
Q ss_pred HHCCCCEEEEECCCH
Q ss_conf 312332478622520
Q gi|255764511|r 100 PDKGVDGVVFDLGVS 114 (341)
Q Consensus 100 ~~~~vdgIl~DLGvS 114 (341)
....+|-|++|==+-
T Consensus 148 ~~~~~DvIYLDPMFP 162 (235)
T pfam04445 148 NIDQPDVVYLDPMYP 162 (235)
T ss_pred CCCCCCEEEECCCCC
T ss_conf 468987899737688
No 63
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.032 Score=34.97 Aligned_cols=87 Identities=26% Similarity=0.421 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECC-CHHHHHHHH
Q ss_conf 4009868866083888889983768828899999748909998099899999999852148-85277113-278898765
Q gi|255764511|r 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQA-TFSQLQDYV 99 (341)
Q Consensus 22 PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~-~F~~i~~~l 99 (341)
|-+-.-.+..-..++|..++|==.|.||---.--=.+.++||.|.|..++.-|+.+++.|. ..+.++.. +-.++. +
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp--l 260 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP--L 260 (347)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--C
T ss_conf 89999987774164698764576783488883664275676032379998556641566276761688730221277--8
Q ss_pred HHCCCCEEEEE
Q ss_conf 31233247862
Q gi|255764511|r 100 PDKGVDGVVFD 110 (341)
Q Consensus 100 ~~~~vdgIl~D 110 (341)
+.+.||+|.-|
T Consensus 261 ~~~~vdaIatD 271 (347)
T COG1041 261 RDNSVDAIATD 271 (347)
T ss_pred CCCCCCEEEEC
T ss_conf 87742358846
No 64
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.78 E-value=0.18 Score=30.17 Aligned_cols=94 Identities=17% Similarity=0.241 Sum_probs=68.3
Q ss_pred HHHH-HHHHCC--CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHH
Q ss_conf 9868-866083--8888899837688288999997489-09998099899999999852148--8527711327889876
Q gi|255764511|r 25 LEKV-IALLNP--APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDY 98 (341)
Q Consensus 25 l~Ev-l~~l~~--~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~ 98 (341)
++|. -+.|.+ ..|..++|+=-|.|+=...-|.++. +++.+|+|..|....+++++.-+ .+..+++.+-...-..
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~ 108 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ 108 (187)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHH
T ss_conf 88999987343445798899946876476899985788569999659899999999999848761259984008999872
Q ss_pred HHHC-CCCEEEEECCCHHHHH
Q ss_conf 5312-3324786225207888
Q gi|255764511|r 99 VPDK-GVDGVVFDLGVSSMQI 118 (341)
Q Consensus 99 l~~~-~vdgIl~DLGvSS~Ql 118 (341)
+... .+|-|++|==|-.-.+
T Consensus 109 ~~~~~~FDlVflDPPy~~~l~ 129 (187)
T COG0742 109 LGTREPFDLVFLDPPYAKGLL 129 (187)
T ss_pred CCCCCCCCEEEECCCCCCCHH
T ss_conf 277885128996899753606
No 65
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.77 E-value=0.041 Score=34.33 Aligned_cols=93 Identities=22% Similarity=0.219 Sum_probs=62.1
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCC
Q ss_conf 09868866083888889983768828899999748909998099899999999852148852771132788987653123
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~ 103 (341)
+.+..++.|...+.+.++|.-.|.|-.|..+.+.+++|+|+|.-+.++..|+++... ..++.+....+. +....
T Consensus 30 ~a~~Ll~~l~~~~~~~vLDlGcGtG~~t~~l~~~~~~v~~~Dls~~Ml~~a~~~~~~----~~~~~~D~e~Lp--~~~~s 103 (251)
T PRK10258 30 SADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA----DHYLAGDIESLP--LATAT 103 (251)
T ss_pred HHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC----HHHHHCHHHHCC--CCCCC
T ss_conf 999999736657899399983100278999997499699995989999999874863----343536063099--98788
Q ss_pred CCEEEEECCCHHHHH-HHHHHCC
Q ss_conf 324786225207888-7654073
Q gi|255764511|r 104 VDGVVFDLGVSSMQI-DCGDRGF 125 (341)
Q Consensus 104 vdgIl~DLGvSS~Ql-d~~~RGF 125 (341)
+|.|+-.+. +|+ +|+..-|
T Consensus 104 fDli~S~~~---lqW~~d~~~~l 123 (251)
T PRK10258 104 FDLAWSNLA---VQWCGNLSTAL 123 (251)
T ss_pred CCEEEECCC---HHHCCCHHHHH
T ss_conf 217855040---45259999999
No 66
>PRK11524 putative methyltransferase; Provisional
Probab=95.77 E-value=0.058 Score=33.32 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=11.3
Q ss_pred EEEECCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 27711327889876531233247862252
Q gi|255764511|r 85 FSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341)
Q Consensus 85 ~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341)
.+++|++--++-+.++...||-|+.|-=|
T Consensus 9 ~kIy~gDcle~lk~lpd~SIDLIiTDPPY 37 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPY 37 (284)
T ss_pred CEEEECCHHHHHHHCCCCCCCEEEECCCC
T ss_conf 98995318999853855773879989999
No 67
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.77 E-value=0.084 Score=32.30 Aligned_cols=64 Identities=23% Similarity=0.353 Sum_probs=52.4
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH
Q ss_conf 838888899837688288999997489-0999809989999999985214885277113278898
Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341)
Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341)
.+..|.+++|.-.|.|=-+.+-+-.++ +|+|+|.||+|++.++++..+...++.|+.++-+.+.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~ 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR 106 (198)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHHCC
T ss_conf 88478888882788478899998629717999936989999999888860884699982101147
No 68
>KOG0820 consensus
Probab=95.66 E-value=0.079 Score=32.49 Aligned_cols=98 Identities=21% Similarity=0.452 Sum_probs=75.4
Q ss_pred CCCCCCC---CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEEC
Q ss_conf 1607833---4009868866083888889983768828899999748909998099899999999852148--8527711
Q gi|255764511|r 15 HTIGDHV---PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQ 89 (341)
Q Consensus 15 ~~~~~H~---PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~ 89 (341)
...+-|+ |-.++.+++--..++..+++.|-=|.|--|..+|+++.+|+|+..||.++..-.+|.+.-+ .++.+++
T Consensus 34 kd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~ 113 (315)
T KOG0820 34 KDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLH 113 (315)
T ss_pred CCCCHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 43014555477889999860478998779995798778999999720848999408078999999866998656046885
Q ss_pred CCHHHHHHHHHHCCCCEEEEECC--CHHH
Q ss_conf 32788987653123324786225--2078
Q gi|255764511|r 90 ATFSQLQDYVPDKGVDGVVFDLG--VSSM 116 (341)
Q Consensus 90 ~~F~~i~~~l~~~~vdgIl~DLG--vSS~ 116 (341)
+.|=..+ + .-+|+++.+|- +||.
T Consensus 114 gD~lK~d--~--P~fd~cVsNlPyqISSp 138 (315)
T KOG0820 114 GDFLKTD--L--PRFDGCVSNLPYQISSP 138 (315)
T ss_pred CCCCCCC--C--CCCCEEECCCCCCCCCH
T ss_conf 0312578--8--51031122698533678
No 69
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=95.62 E-value=0.04 Score=34.39 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=51.2
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 868866083888889983768828899999748909998099899999999852148852771
Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 (341)
Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~ 88 (341)
.||+......+.|..+|--.|.|-+|..+-+.+-.|.|+|..+.+|..++...++.+=.+...
T Consensus 20 Sev~~a~~~i~pgk~LDlgcG~GRNslyLa~~G~~VtavD~n~~aL~~l~~ia~~e~l~i~~~ 82 (192)
T pfam03848 20 SEVLEAVKTVKPGKALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLDIPTA 82 (192)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 999999863799746660478973189998689917999799999999999999709975268
No 70
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=95.61 E-value=0.091 Score=32.08 Aligned_cols=90 Identities=17% Similarity=0.306 Sum_probs=74.3
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHH
Q ss_conf 33400986886608388888998376882889999974890999809989999999985214--8852771132788987
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQD 97 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~ 97 (341)
+.|..++.+++...+.++..++.--=|.|.=|..+|+...+|+|++.|+..+..-++++... .+++.++++.+-.++
T Consensus 22 ~D~~i~~~Iv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii~~D~Lk~d- 100 (296)
T PTZ00338 22 KNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLQVIEGDALKTE- 100 (296)
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEECCHHHHCC-
T ss_conf 8989999999960789899579966854299999983589179999488999999999851445667357705053185-
Q ss_pred HHHHCCCCEEEEECCC
Q ss_conf 6531233247862252
Q gi|255764511|r 98 YVPDKGVDGVVFDLGV 113 (341)
Q Consensus 98 ~l~~~~vdgIl~DLGv 113 (341)
+ ..++-++.+|=|
T Consensus 101 -~--~~~~~vVaNLPY 113 (296)
T PTZ00338 101 -F--PYFDVCVANVPY 113 (296)
T ss_pred -C--CCCCEEEECCCC
T ss_conf -6--411446635870
No 71
>PRK13699 putative methylase; Provisional
Probab=95.60 E-value=0.095 Score=31.96 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=4.4
Q ss_pred HHCCCCEEEEEC
Q ss_conf 312332478622
Q gi|255764511|r 100 PDKGVDGVVFDL 111 (341)
Q Consensus 100 ~~~~vdgIl~DL 111 (341)
+...||-|+.|-
T Consensus 17 pd~SVDliiTDP 28 (227)
T PRK13699 17 PDNAVDFILTDP 28 (227)
T ss_pred CCCCCCEEEECC
T ss_conf 887729799898
No 72
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=95.55 E-value=0.048 Score=33.86 Aligned_cols=110 Identities=18% Similarity=0.318 Sum_probs=78.4
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCC-EEE--ECCCHHHHHHHHHH
Q ss_conf 886608388888998376882889999974---890999809989999999985214885-277--11327889876531
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQ-FSL--FQATFSQLQDYVPD 101 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r-~~~--~~~~F~~i~~~l~~ 101 (341)
|...|+|+++.+++|+=---||=|.+|++. .++|+|+|+|..=+..-.+.++.-+-. +++ ..+.-+.-...+.+
T Consensus 263 va~~L~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~~~~~~~W~~e 342 (487)
T TIGR00563 263 VATLLDPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGDKAGPKEWLAE 342 (487)
T ss_pred HHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCC
T ss_conf 99973889887477311484570476774247972089886212578899999986188378877202567766544452
Q ss_pred -C----CCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHH
Q ss_conf -2----332478622520788876540734456641010435568418999
Q gi|255764511|r 102 -K----GVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDV 147 (341)
Q Consensus 102 -~----~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~ei 147 (341)
. .||-||+|-=.|.+ ---+=.| |||+-+..-+-+++
T Consensus 343 ~~ksaa~fDRiLlDaPCSg~---------GvirR~P-D~kw~~~~~diA~L 383 (487)
T TIGR00563 343 VEKSAAQFDRILLDAPCSGT---------GVIRRHP-DIKWLRKPADIARL 383 (487)
T ss_pred CHHHHHHHCEEEECCCCCCC---------CCEEECC-CCCCCCCCCCCHHH
T ss_conf 01023331421560787744---------3300178-75556685651789
No 73
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.51 E-value=0.035 Score=34.78 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=63.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 899837688288999997489--0999809989999999985214--885277113278898765312332478622520
Q gi|255764511|r 39 VILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341)
-++|.=.|.|+.+..+.+.++ +|+|+|..+++++.|+++.+.. .+|+.+.+++...+. .+. .+|.|+. =-+
T Consensus 2 rVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lp--f~d-~FD~V~s--~ev 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--FPD-TYDLVFG--FEV 76 (224)
T ss_pred EEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCC--CCC-CCCEEEH--HHH
T ss_conf 08998366888899999977998899997999999999999997299865147852110399--999-8356768--535
Q ss_pred HHHHHHHHHCCC
Q ss_conf 788876540734
Q gi|255764511|r 115 SMQIDCGDRGFS 126 (341)
Q Consensus 115 S~Qld~~~RGFS 126 (341)
.+|+.|.+.-|.
T Consensus 77 l~Hi~D~~~~l~ 88 (224)
T smart00828 77 IHHIKDKMDLFS 88 (224)
T ss_pred HHCCCCHHHHHH
T ss_conf 765399999999
No 74
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.44 E-value=0.12 Score=31.39 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=66.7
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHH
Q ss_conf 334009868866083888889983768828899999748--9099980998999999998521--488527711327889
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQL 95 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i 95 (341)
+..|||-.-+. +...+.++|---|.|.=+..+-++. .++.|+++|+++...|.+.++- +.+|+.++++++.++
T Consensus 31 ~DaiLL~~~~~---~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 31 TDAILLAAFAP---VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107 (248)
T ss_pred CHHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHH
T ss_conf 08999976526---566876988368946899997455877807999817999999999886186134016764308876
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 87653123324786
Q gi|255764511|r 96 QDYVPDKGVDGVVF 109 (341)
Q Consensus 96 ~~~l~~~~vdgIl~ 109 (341)
.+......+|.|+.
T Consensus 108 ~~~~~~~~fD~Ii~ 121 (248)
T COG4123 108 LKALVFASFDLIIC 121 (248)
T ss_pred HHCCCCCCCCEEEE
T ss_conf 54236565478995
No 75
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.43 E-value=0.12 Score=31.41 Aligned_cols=155 Identities=21% Similarity=0.243 Sum_probs=99.5
Q ss_pred CHHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
Q ss_conf 0098688660838888-89983768828899999748--90999809989999999985214885277113278898765
Q gi|255764511|r 23 VLLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341)
Q Consensus 23 Vll~Evl~~l~~~~~g-~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341)
.|++.+++.+...+.. +++|.--|.|-=+.+++... .+++|+|..++|+..|+++.+.++-++.|++++.-+ .+
T Consensus 95 ~LVe~~l~~~~~~~~~~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~~~v~~~~~dl~~---~~ 171 (285)
T PRK09329 95 ILVEKIIGYLQSHKEIQTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNGLDVDFLLGDLFA---PF 171 (285)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHH---HH
T ss_conf 999999999861877777888454179999999985898658803376999999999999729947999763003---33
Q ss_pred HHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 31233247862252078887654073445664101043556841899986222578998999744630268899999999
Q gi|255764511|r 100 PDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 (341)
Q Consensus 100 ~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~ 179 (341)
+++.|+= |
T Consensus 172 ------------------------------~~~~DlI----------------------------------------v-- 179 (285)
T PRK09329 172 ------------------------------SRPADAF----------------------------------------V-- 179 (285)
T ss_pred ------------------------------CCCCCEE----------------------------------------E--
T ss_conf ------------------------------4767889----------------------------------------9--
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 75212432137999999887643127712578888887665134057899999988520244533899872550238999
Q gi|255764511|r 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVK 259 (341)
Q Consensus 180 R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK 259 (341)
.+=|...+.++..+-.. +. ...|.. || ..=++-|+..+..+..+..+|+|||.+++ -.+.---..|+
T Consensus 180 -SNPPYI~~~e~~~l~~e-V~-----~~EP~~----AL-~gg~dGl~~~r~i~~~a~~~L~~~G~l~~-Eig~~Q~~~v~ 246 (285)
T PRK09329 180 -CNPPYLSFKEFFHVDPE-VR-----CHEPWK----AL-VGGSSGLEFYQRIAQELPKILVPGGVGWL-EIGSSQGESVK 246 (285)
T ss_pred -ECCCCCCHHHHHHCCHH-HH-----HCCCHH----HH-HCCCCHHHHHHHHHHHHHHHCCCCCEEEE-EECCHHHHHHH
T ss_conf -89998884445449875-54-----367099----88-47973899999999999996004988999-96854899999
Q ss_pred HHHHHH
Q ss_conf 999864
Q gi|255764511|r 260 KFFASR 265 (341)
Q Consensus 260 ~ff~~~ 265 (341)
+.|+..
T Consensus 247 ~l~~~~ 252 (285)
T PRK09329 247 KIFAKH 252 (285)
T ss_pred HHHHHC
T ss_conf 999966
No 76
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=95.38 E-value=0.1 Score=31.68 Aligned_cols=93 Identities=28% Similarity=0.344 Sum_probs=54.9
Q ss_pred CCCCCC-CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCH
Q ss_conf 607833-40098688660838888899837688288999997489-0999809989999999985214885277-11327
Q gi|255764511|r 16 TIGDHV-PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSL-FQATF 92 (341)
Q Consensus 16 ~~~~H~-PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~-~~~~F 92 (341)
-++.|- ..|.=|.++-+ .+++...+|--.|.|==|-+.++.+. +++|+|.||.|+..|+++.... .+.. .+...
T Consensus 142 GTG~HpTT~lcL~~Le~~-~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N--~v~~~~~~~~ 218 (300)
T COG2264 142 GTGTHPTTSLCLEALEKL-LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN--GVELLVQAKG 218 (300)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC--CCCHHHHCCC
T ss_conf 788780179999999986-0589879982678159999999819866899718889999999999976--9960220034
Q ss_pred HHHHHHHHHCCCCEEEEEC
Q ss_conf 8898765312332478622
Q gi|255764511|r 93 SQLQDYVPDKGVDGVVFDL 111 (341)
Q Consensus 93 ~~i~~~l~~~~vdgIl~DL 111 (341)
...........+|.|.+++
T Consensus 219 ~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 219 FLLLEVPENGPFDVIVANI 237 (300)
T ss_pred CCCHHHCCCCCCCEEEEHH
T ss_conf 5630001368656898605
No 77
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=95.34 E-value=0.036 Score=34.65 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=51.9
Q ss_pred EECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 98376882889999974--89099980998999999998521488-5277113278898765312332478622520788
Q gi|255764511|r 41 LDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 (341)
Q Consensus 41 iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~-r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Q 117 (341)
+|.=.|.|..+..+.+. ..+|+|+|..+.++..+++++..... .+..++....+... .+...+|.|+.- ..-++
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~I~~~--~vl~~ 77 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID-LDPGSFDVVVAS--NVLHH 77 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHH-CCCCCCCEEEEC--CCHHH
T ss_conf 988633799999999878998899985988999999999987134531110000000222-035898899610--41772
Q ss_pred HHHHHHCC
Q ss_conf 87654073
Q gi|255764511|r 118 IDCGDRGF 125 (341)
Q Consensus 118 ld~~~RGF 125 (341)
+.++++-|
T Consensus 78 ~~~~~~~l 85 (98)
T pfam08242 78 LADPRAVL 85 (98)
T ss_pred CCCHHHHH
T ss_conf 58999999
No 78
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=95.30 E-value=0.28 Score=28.91 Aligned_cols=104 Identities=15% Similarity=0.295 Sum_probs=75.4
Q ss_pred CCCHHHCCCCCCCCCCHHHHHH-------HHHCCCCCCEEEECCCCCCHHHHHHHHHCCE--EEEECCCHHHHHHHHHHH
Q ss_conf 3201101160783340098688-------6608388888998376882889999974890--999809989999999985
Q gi|255764511|r 8 TMSSAIHHTIGDHVPVLLEKVI-------ALLNPAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETM 78 (341)
Q Consensus 8 ~m~~~~~~~~~~H~PVll~Evl-------~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~--liaiDrD~~ai~~a~~~l 78 (341)
+|..........|-|.+..+-. +.+.-...-++|+--+|.|.|.-++-..+|. .+|++.-...+..+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~ 92 (227)
T COG0220 13 RLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKI 92 (227)
T ss_pred CCCHHHHHHHHHCCCCCCCCHHHCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHH
T ss_conf 34588887787454212878344400379983888896699968889878999998789877899997348999999999
Q ss_pred HHCCC-CEEEECCCHHHHHHHHHHC-CCCEEEEEC
Q ss_conf 21488-5277113278898765312-332478622
Q gi|255764511|r 79 RDYKE-QFSLFQATFSQLQDYVPDK-GVDGVVFDL 111 (341)
Q Consensus 79 ~~~~~-r~~~~~~~F~~i~~~l~~~-~vdgIl~DL 111 (341)
.+.+- ++.+++.+-..+.+.+... .+|+|.+.+
T Consensus 93 ~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 93 KELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred HHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEEEC
T ss_conf 98299846998077999997358988565799979
No 79
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=95.20 E-value=0.065 Score=33.03 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=64.9
Q ss_pred CCHHHCCCCCCCC-CCHHHHHHHHHCCCCC--CEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCC
Q ss_conf 2011011607833-4009868866083888--8899837688288999997489-0999809989999999985214885
Q gi|255764511|r 9 MSSAIHHTIGDHV-PVLLEKVIALLNPAPG--KVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQ 84 (341)
Q Consensus 9 m~~~~~~~~~~H~-PVll~Evl~~l~~~~~--g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r 84 (341)
|--.|+-=+|+|- .+|.=|.++.+. .++ ..+||-=.|.|==|-|.+..+. +++|+|.||.|+..|+.+.+. +.
T Consensus 167 lDPGlAFGTGtH~TT~LCLe~L~~~d-~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~l--N~ 243 (330)
T TIGR00406 167 LDPGLAFGTGTHPTTSLCLELLEDLD-LKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL--NQ 243 (330)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHCCC-CCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHH--CC
T ss_conf 56764568897457899999874014-7776654787126717899999975123112213772899999976874--58
Q ss_pred EEEECCCHHH-----HHHHHHHCCCCEEEEEC
Q ss_conf 2771132788-----98765312332478622
Q gi|255764511|r 85 FSLFQATFSQ-----LQDYVPDKGVDGVVFDL 111 (341)
Q Consensus 85 ~~~~~~~F~~-----i~~~l~~~~vdgIl~DL 111 (341)
+.....-+.. ..+ ..+..+|+|++++
T Consensus 244 v~~~~~~~~~~~vPe~~~-~~e~~~DViVANi 274 (330)
T TIGR00406 244 VSDRLQVKLENSVPELEQ-PIEGKADVIVANI 274 (330)
T ss_pred CCHHHHHHHCCCCCCCCC-CCCCCCCEEEECC
T ss_conf 864576432057875345-3225667578800
No 80
>PRK10742 putative methyltransferase; Provisional
Probab=95.10 E-value=0.15 Score=30.76 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=45.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH----------CCCCEEEECCCHHHHHHHHHHCCCCEEE
Q ss_conf 899837688288999997489099980998999999998521----------4885277113278898765312332478
Q gi|255764511|r 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD----------YKEQFSLFQATFSQLQDYVPDKGVDGVV 108 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~----------~~~r~~~~~~~F~~i~~~l~~~~vdgIl 108 (341)
+++|||-|.|..+--+-..+++|..+.|.|..-..-..-++. ...|+++++++--+...-+. ..+|-|+
T Consensus 91 ~VlDATAGLGrDAfvLAslGc~VtliER~Pvv~aLL~DgL~RA~~~~e~~~~i~~Rm~L~~gds~~~L~~~~-~~~DVIY 169 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-PRPQVVY 169 (250)
T ss_pred EEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHCC-CCCCEEE
T ss_conf 189878874688999981798699997889999999999999873815589999616786586899997358-8988899
Q ss_pred EECCC
Q ss_conf 62252
Q gi|255764511|r 109 FDLGV 113 (341)
Q Consensus 109 ~DLGv 113 (341)
+|-=+
T Consensus 170 LDPMF 174 (250)
T PRK10742 170 LDPMF 174 (250)
T ss_pred ECCCC
T ss_conf 73667
No 81
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=94.86 E-value=0.23 Score=29.41 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC-----CCCEEE
Q ss_conf 16078334009868866083888889983768828899999748--90999809989999999985214-----885277
Q gi|255764511|r 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY-----KEQFSL 87 (341)
Q Consensus 15 ~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~-----~~r~~~ 87 (341)
+++-.|.|.++ .+.|..+.|=+ -|.||-.+.+|+.. .++...|.|++.+..|++-+... ..|+.+
T Consensus 62 hE~lvH~~~~~-------~~~pk~VLIiG-GGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l 133 (240)
T pfam01564 62 HEMIAHVPLCS-------HPNPKKVLIIG-GGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKV 133 (240)
T ss_pred HHHHHCCHHHH-------CCCCCEEEEEC-CCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 88874537765-------88855367645-86579999985679953899975788999999998798524347985599
Q ss_pred ECCCHH-HHHHHHHHCCCCEEEEECC
Q ss_conf 113278-8987653123324786225
Q gi|255764511|r 88 FQATFS-QLQDYVPDKGVDGVVFDLG 112 (341)
Q Consensus 88 ~~~~F~-~i~~~l~~~~vdgIl~DLG 112 (341)
+.+.=. -+.+. ...+|.|+.|+=
T Consensus 134 ~~~Dg~~~l~~~--~~~yDvII~D~~ 157 (240)
T pfam01564 134 VIGDGFKFLKDY--LVKFDVIIVDST 157 (240)
T ss_pred EEHHHHHHHHHC--CCCCCEEEEECC
T ss_conf 981689999857--254458999589
No 82
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=94.72 E-value=0.28 Score=28.96 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=56.9
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCC-----CCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 83888889983768828899999748--909998099899999999852148-----85277113278898765312332
Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-----EQFSLFQATFSQLQDYVPDKGVD 105 (341)
Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~-----~r~~~~~~~F~~i~~~l~~~~vd 105 (341)
.+.+ ..++=.-.|.||-++.+|+.. .+++..|.|+..+..|++.+.... .|+.++-+.=-+.-.-... ++|
T Consensus 74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fD 151 (282)
T COG0421 74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFD 151 (282)
T ss_pred CCCC-CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCC-CCC
T ss_conf 7997-76999889766999999836884337999708899999998666754335797368996107999874887-677
Q ss_pred EEEEECC
Q ss_conf 4786225
Q gi|255764511|r 106 GVVFDLG 112 (341)
Q Consensus 106 gIl~DLG 112 (341)
-|+.|+.
T Consensus 152 vIi~D~t 158 (282)
T COG0421 152 VIIVDST 158 (282)
T ss_pred EEEECCC
T ss_conf 8998588
No 83
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=94.57 E-value=0.13 Score=31.03 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 3400986886608-3888889983768828899999748-909998099899999999852148
Q gi|255764511|r 21 VPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYK 82 (341)
Q Consensus 21 ~PVll~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~~ 82 (341)
..||..+.++-+. ..++..++|...|.||.-......+ +.++|+|.++++|..|++|.....
T Consensus 47 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vgiDis~~sI~~A~~RY~~~~ 110 (327)
T pfam03291 47 KSLLISLYASKTFQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLN 110 (327)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 9999999988751468898799836866445788974798689996689999999999999864
No 84
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.35 E-value=0.49 Score=27.35 Aligned_cols=46 Identities=37% Similarity=0.569 Sum_probs=22.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH
Q ss_conf 8888899837688288999997489-099980998999999998521
Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~ 80 (341)
.++..++|.-.|.|==|-+-.+.+. +|+|+|.||.|+..|+++.+.
T Consensus 161 ~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~l 207 (298)
T PRK00517 161 LPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAEL 207 (298)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 46886887157706999999974998499998989999999999998
No 85
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.20 E-value=0.46 Score=27.52 Aligned_cols=73 Identities=15% Similarity=0.299 Sum_probs=59.6
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHH
Q ss_conf 0986886608388888998376882889999974-890999809989999999985214--885277113278898
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~ 96 (341)
=++.+++-|..+||..++|--.|-||=+...-+. +.+|+|++..++....+++++..- .+++.+......++.
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 9999997569999998987478844999999998499799966899999999999997599766079965621032
No 86
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=94.14 E-value=0.3 Score=28.71 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=75.1
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHHHHHHHH--HCCCCEEEECCCHHHHH
Q ss_conf 33400986886608388888998376882889999974890-9998099899999999852--14885277113278898
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMR--DYKEQFSLFQATFSQLQ 96 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~a~~~l~--~~~~r~~~~~~~F~~i~ 96 (341)
|.+..++.+++.+++.++..+|===-|-|.=|+.+|+...+ |+||..|+.....-+++.. . ..++.++++.+-.++
T Consensus 13 ~D~~~~~~Iv~~~~~~~~~~vlEIGPG~G~LT~~Ll~~~~~~v~aiEiD~~l~~~L~~~~~~~~-~~~~~~i~~Dalk~~ 91 (277)
T TIGR00755 13 IDESVIQKIVEAANVLENDVVLEIGPGLGALTEPLLKRAKKLVTAIEIDPRLAEILRKLLSEKL-YENLEVIEGDALKVD 91 (277)
T ss_pred ECHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCC-CCCEEEEECCEEEEC
T ss_conf 0878999999974378997799973882078999998259848999726789999875215433-242578714445412
Q ss_pred HH-HHHC-CCC--EEEEECCCH
Q ss_conf 76-5312-332--478622520
Q gi|255764511|r 97 DY-VPDK-GVD--GVVFDLGVS 114 (341)
Q Consensus 97 ~~-l~~~-~vd--gIl~DLGvS 114 (341)
-- +.+. ..+ -|+.+|=|+
T Consensus 92 ~~~~~~~~~~~~~~vv~NLPY~ 113 (277)
T TIGR00755 92 LNSLEDFPKEDKLKVVSNLPYN 113 (277)
T ss_pred CCHHHHCCCCCCCEEEEECCCC
T ss_conf 3204331678985798507743
No 87
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=93.92 E-value=0.08 Score=32.44 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHH------HHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCC-----CCEE
Q ss_conf 833400986886------60838888899837688288999997489-09998099899999999852148-----8527
Q gi|255764511|r 19 DHVPVLLEKVIA------LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK-----EQFS 86 (341)
Q Consensus 19 ~H~PVll~Evl~------~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~-----~r~~ 86 (341)
+|..+..+-..+ ...++.|+.++||-.|-|--+-+-++++. +|+-+..||..+..|+ +.+|. .++.
T Consensus 111 Mhrt~~tdP~~Dt~~Kv~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~--lNPwSr~l~~~~i~ 188 (287)
T COG2521 111 MHRTKGTDPLEDTLAKVELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAK--LNPWSRELFEIAIK 188 (287)
T ss_pred EECCCCCCCHHHHHHHHHEECCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCEEEEEC--CCCCCCCCCCCCCE
T ss_conf 7513676807888756624443668784432467138999998758748999960877277413--58898420200317
Q ss_pred EECCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 711327889876531233247862
Q gi|255764511|r 87 LFQATFSQLQDYVPDKGVDGVVFD 110 (341)
Q Consensus 87 ~~~~~F~~i~~~l~~~~vdgIl~D 110 (341)
++++.-.++-+-+.+..||.|+-|
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred EECCCHHHHHHCCCCCCCCEEEEC
T ss_conf 861659999741886530168607
No 88
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=93.79 E-value=0.43 Score=27.70 Aligned_cols=42 Identities=26% Similarity=0.447 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEE--ECCCHHHHHHHHHHHHC
Q ss_conf 05789999998852024453389987--25502389999998641
Q gi|255764511|r 224 EIEELAQGLRSAEKALKAGGLLIVVS--FHSLEDRLVKKFFASRS 266 (341)
Q Consensus 224 El~~L~~~L~~~~~~L~~gGrl~VIS--FHSLEDRiVK~ff~~~~ 266 (341)
..+..+.++..+.+.|+|||.|-++. |=..| .+..+.|....
T Consensus 278 ~~~i~~~fi~~A~~~L~~gG~L~iVANr~LpY~-~~L~~~Fg~~~ 321 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP-DLLDETFGSHE 321 (342)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-HHHHHHCCCEE
T ss_conf 589999999999986124988999981898968-99998629829
No 89
>PRK06202 hypothetical protein; Provisional
Probab=93.52 E-value=0.44 Score=27.68 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=40.6
Q ss_pred HHHHHHHHHCCCC--CCEEEECCCCCCHHHHHHHHH---C---CEEEEECCCHHHHHHHHHHHHH
Q ss_conf 0986886608388--888998376882889999974---8---9099980998999999998521
Q gi|255764511|r 24 LLEKVIALLNPAP--GKVILDATFGAGGYSRSFCKM---G---SNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 24 ll~Evl~~l~~~~--~g~~iD~TlG~GGHS~~iL~~---~---~~liaiDrD~~ai~~a~~~l~~ 80 (341)
++.-++..+.-.+ .-.++|--.|+|.=+.++... . -+++|+|.+|.++..|++.-+.
T Consensus 47 ~~~~~~~~~~~~~~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~ 111 (233)
T PRK06202 47 LYRRHLRPALRAPDRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARR 111 (233)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCC
T ss_conf 99999999975878872899834787579999999997559963899977988999999873403
No 90
>PRK04457 spermidine synthase; Provisional
Probab=93.49 E-value=0.57 Score=26.93 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=65.2
Q ss_pred CCCCHHHCCCCCCCCCCHH--HHHHHHH--CCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH
Q ss_conf 4320110116078334009--8688660--83888889983768828899999748--9099980998999999998521
Q gi|255764511|r 7 KTMSSAIHHTIGDHVPVLL--EKVIALL--NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 7 ~~m~~~~~~~~~~H~PVll--~Evl~~l--~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~ 80 (341)
..++++|.... -+.+|+- ...+..| .|.| ..++---+|+|+-++.+.+.. .++.+++.||+.+..|++-+.-
T Consensus 35 ~~~QS~m~~~~-P~~L~l~Ytr~Mm~~LLf~p~P-k~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~l 112 (262)
T PRK04457 35 DTIQSSMRLDR-PSELVLSYSRAMMGFLLFNPRP-QHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFEL 112 (262)
T ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHHCCCCC-CEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 86382354278-8502128899999998658997-869999257019999999839867589998788999999986579
Q ss_pred --CCCCEEEECCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf --4885277113278898765312332478622
Q gi|255764511|r 81 --YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 (341)
Q Consensus 81 --~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DL 111 (341)
-..|+.++++.-...-.- ....+|-|+.|+
T Consensus 113 P~dd~Rl~V~~~Dg~~fv~~-~~~~~DvI~vD~ 144 (262)
T PRK04457 113 PFEDEKFEIIEADGAEYIKV-FPASTDVILVDG 144 (262)
T ss_pred CCCCCCEEEEECCHHHHHHH-CCCCCCEEEEEC
T ss_conf 99997269995538999854-867778899968
No 91
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=93.48 E-value=0.12 Score=31.34 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=40.5
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 888766513405789999998852024453389987255023899999986417
Q gi|255764511|r 214 FQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 (341)
Q Consensus 214 FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~~ 267 (341)
-.+||-. ..++.+|..+..+|+|||+++|+-|.--+.++.+.++.-+..
T Consensus 123 ~fglrn~-----~d~~~al~E~~RVLKPGG~l~ilefs~P~~~~~~~~~~~Y~~ 171 (233)
T pfam01209 123 SFGLRNF-----PDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFK 171 (233)
T ss_pred HHHHHCC-----CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1012125-----888999999998727897899997888877799999999995
No 92
>PRK00811 spermidine synthase; Provisional
Probab=93.42 E-value=0.73 Score=26.25 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=54.7
Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH-----C-CCCEEEECCCHHHHHHHHHHCC
Q ss_conf 083888889983768828899999748--9099980998999999998521-----4-8852771132788987653123
Q gi|255764511|r 32 LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD-----Y-KEQFSLFQATFSQLQDYVPDKG 103 (341)
Q Consensus 32 l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~-----~-~~r~~~~~~~F~~i~~~l~~~~ 103 (341)
..+.|..+.| .--|.||-.+.+|+.. .++.-.|.|++.+..+++-+.+ + ..|+.++...-...-+-. ...
T Consensus 75 ~h~~pk~VLI-iGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~-~~~ 152 (283)
T PRK00811 75 AHPNPKKVLI-IGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRET-ENS 152 (283)
T ss_pred HCCCCCEEEE-ECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHC-CCC
T ss_conf 3899774899-56874799999842788567999946899999999983886313302971599827899999845-235
Q ss_pred CCEEEEEC
Q ss_conf 32478622
Q gi|255764511|r 104 VDGVVFDL 111 (341)
Q Consensus 104 vdgIl~DL 111 (341)
+|-|+.|+
T Consensus 153 yDvII~D~ 160 (283)
T PRK00811 153 FDVIIVDS 160 (283)
T ss_pred CCEEEEEC
T ss_conf 54899808
No 93
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=93.40 E-value=0.34 Score=28.34 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=47.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHH-HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 38888899837688288999997-48909998099899999999852148852771132788987653123324786
Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341)
Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~-~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341)
+.++..++|.-.|.|-....+-+ ++..++|+|.|++++..|.++ .+.++++++..-....+...||.|++
T Consensus 11 I~~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~k------g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 11 IPPGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAK------GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHC------CCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 589698998368898999999876698769833899999999864------79545077445974577678037869
No 94
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=93.22 E-value=0.78 Score=26.05 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 5134057899999988520244533899872
Q gi|255764511|r 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 (341)
Q Consensus 220 ~VN~El~~L~~~L~~~~~~L~~gGrl~VISF 250 (341)
..|==.+.|..+.......|+|||++++=-+
T Consensus 229 vANIla~~L~~l~~~~~~~l~~~G~lilSGi 259 (294)
T pfam06325 229 VANILADPLIELAPDIYALVKPGGYLILSGI 259 (294)
T ss_pred EEHHCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 8410899999999999997389989999178
No 95
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=92.75 E-value=0.78 Score=26.06 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=52.4
Q ss_pred CCCCHHHCCC-CCCCCCCHHHHHHHHHC---CCCCCEEEECCCCCCHHHHHHHHH-----CCEEEEECCCHHHHHHHHHH
Q ss_conf 4320110116-07833400986886608---388888998376882889999974-----89099980998999999998
Q gi|255764511|r 7 KTMSSAIHHT-IGDHVPVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKM-----GSNVIALDRDPFAVSCGQET 77 (341)
Q Consensus 7 ~~m~~~~~~~-~~~H~PVll~Evl~~l~---~~~~g~~iD~TlG~GGHS~~iL~~-----~~~liaiDrD~~ai~~a~~~ 77 (341)
+.|.++=..- ...|+--|.+.+.+.+. +.....++|+-.|.|-|+..+.+. ...++|+|.-..||..|.++
T Consensus 52 ~~mv~AR~~fL~~G~y~pl~~~i~~~~~~~~~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~ 131 (272)
T PRK11088 52 KEMMQARRAFLDAGHYQPLRDAVANLLAERLDEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCC
T ss_conf 99999999999768847999999999997567778648881587778999999974115787379981179999999626
Q ss_pred HH
Q ss_conf 52
Q gi|255764511|r 78 MR 79 (341)
Q Consensus 78 l~ 79 (341)
..
T Consensus 132 ~~ 133 (272)
T PRK11088 132 YP 133 (272)
T ss_pred CC
T ss_conf 88
No 96
>KOG3420 consensus
Probab=92.68 E-value=0.21 Score=29.77 Aligned_cols=110 Identities=23% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCCCCCCCHHHHHHHH-HCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH
Q ss_conf 6078334009868866-08388888998376882889999974-890999809989999999985214885277113278
Q gi|255764511|r 16 TIGDHVPVLLEKVIAL-LNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS 93 (341)
Q Consensus 16 ~~~~H~PVll~Evl~~-l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~ 93 (341)
.+..|+-+-.-+++.. ...-.|...+|--.|.|--|-+.--. ...++|||.||+|++.+..+.++|.-+..+.+....
T Consensus 27 ~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdil 106 (185)
T KOG3420 27 PTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDIL 106 (185)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHEEEEECC
T ss_conf 99678999999999862012047462252476115677750578733786405889999986166875233421222215
Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC
Q ss_conf 89876531233247862252078887654073445664101043556
Q gi|255764511|r 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 (341)
Q Consensus 94 ~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~ 140 (341)
++. +...-+|-.+.| | -|.-+..| -|||+-..
T Consensus 107 dle--~~~g~fDtaviN----------p--pFGTk~~~-aDm~fv~~ 138 (185)
T KOG3420 107 DLE--LKGGIFDTAVIN----------P--PFGTKKKG-ADMEFVSA 138 (185)
T ss_pred CHH--CCCCEEEEEEEC----------C--CCCCCCCC-CCHHHHHH
T ss_conf 511--058767667866----------8--98764344-33899999
No 97
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=92.50 E-value=0.98 Score=25.41 Aligned_cols=101 Identities=11% Similarity=0.042 Sum_probs=70.4
Q ss_pred CCCHHHHHH-HHHCC-CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHH
Q ss_conf 340098688-66083-8888899837688288999997489-09998099899999999852148-85277113278898
Q gi|255764511|r 21 VPVLLEKVI-ALLNP-APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQ 96 (341)
Q Consensus 21 ~PVll~Evl-~~l~~-~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~ 96 (341)
++-.++|.| +.|.+ ..+..++|+=-|.|.-...-|.++. +|+.+|.|..++...++.++..+ ++..+++.+- .
T Consensus 35 T~drvREalFn~L~~~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da---~ 111 (198)
T PRK10909 35 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNA---L 111 (198)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHH---H
T ss_conf 8388999999875764299879982777468899999879978999978999999999999984888679995569---9
Q ss_pred HHHHH--CCCCEEEEECCCHHHHHHHHHHC
Q ss_conf 76531--23324786225207888765407
Q gi|255764511|r 97 DYVPD--KGVDGVVFDLGVSSMQIDCGDRG 124 (341)
Q Consensus 97 ~~l~~--~~vdgIl~DLGvSS~Qld~~~RG 124 (341)
.++.. ..+|-|++|==|...++...-.-
T Consensus 112 ~~L~~~~~~fDlIF~DPPY~~~~~~~~l~~ 141 (198)
T PRK10909 112 SFLAQPGTPHNVVFVDPPFRKGLLEETINL 141 (198)
T ss_pred HHHHCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 986255995218998999765559999999
No 98
>KOG2360 consensus
Probab=92.40 E-value=0.24 Score=29.34 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHHCCCCCCEEEECCCCCC---HHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCC-CEEEECCCHHHHHHHHHHCCCC
Q ss_conf 6608388888998376882---88999997489099980998999999998521488-5277113278898765312332
Q gi|255764511|r 30 ALLNPAPGKVILDATFGAG---GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE-QFSLFQATFSQLQDYVPDKGVD 105 (341)
Q Consensus 30 ~~l~~~~~g~~iD~TlG~G---GHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~-r~~~~~~~F~~i~~~l~~~~vd 105 (341)
..|+|.+|+.++|.---.| -|.-+|.+..++++|||+|.+-...-.+.+...+. .+....+.|.+....-.-.+|.
T Consensus 207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~ 286 (413)
T KOG2360 207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVT 286 (413)
T ss_pred HHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 54389998823554146653211299886224872132341688999999998717874532014444777810026505
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC
Q ss_conf 47862252078887654073445664101043556
Q gi|255764511|r 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS 140 (341)
Q Consensus 106 gIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~ 140 (341)
.||+|=|.|-- -=+.+|++++.
T Consensus 287 ~iL~DpscSgS-------------gm~~r~~~~~~ 308 (413)
T KOG2360 287 YILVDPSCSGS-------------GMVSRQDEDPG 308 (413)
T ss_pred EEEECCCCCCC-------------CCCCCEEECCC
T ss_conf 99857987877-------------65223242267
No 99
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=92.04 E-value=0.58 Score=26.89 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=39.5
Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHH----HH-----CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 68866083888889983768828899999----74-----89099980998999999998521
Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFC----KM-----GSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL----~~-----~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
=+++.++|.++..+.|-+.|.||---+.. +. ..+++|.|.++.+...|+-++--
T Consensus 37 lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~l 99 (312)
T pfam02384 37 LIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMIL 99 (312)
T ss_pred HHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 999982899999882168773378999999999843785565563688998999999999998
No 100
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=91.93 E-value=1.1 Score=24.98 Aligned_cols=76 Identities=16% Similarity=0.359 Sum_probs=60.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH-HHHHCCCCEEEEE
Q ss_conf 8888899837688288999997489--09998099899999999852148-852771132788987-6531233247862
Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD-YVPDKGVDGVVFD 110 (341)
Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~-~l~~~~vdgIl~D 110 (341)
.+.-+++|--+|.|.|..++-..++ .+||+|.-...+..+-+.....+ .++.+++++...+-. +++...+++|.+-
T Consensus 53 ~~~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i~ 132 (229)
T PRK00121 53 NDAPIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYLN 132 (229)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEEC
T ss_conf 99943999615896999999986888868999961699999999999829983898834789999971464541404671
No 101
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=91.90 E-value=1.2 Score=24.96 Aligned_cols=86 Identities=10% Similarity=0.222 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH-HH
Q ss_conf 40098688660838888899837688288999997489--0999809989999999985214--8852771132788-98
Q gi|255764511|r 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ-LQ 96 (341)
Q Consensus 22 PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~-i~ 96 (341)
|.-.+|+-. .++-++||--+|.|+|...+-..++ .++|+|.-...+..+.+++.+. -.++.+++++... +.
T Consensus 10 ~ldw~~~F~----~~~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~ 85 (199)
T pfam02390 10 SLDWQALFG----NEQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLP 85 (199)
T ss_pred CCCHHHHCC----CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHH
T ss_conf 979899839----9994499973688899999999789987899995059999999999984577737876047999999
Q ss_pred HHHHHCCCCEEEEEC
Q ss_conf 765312332478622
Q gi|255764511|r 97 DYVPDKGVDGVVFDL 111 (341)
Q Consensus 97 ~~l~~~~vdgIl~DL 111 (341)
.+++...++.|.+.+
T Consensus 86 ~~~~~~~l~~i~i~F 100 (199)
T pfam02390 86 NLFPDGSLQKIFINF 100 (199)
T ss_pred HHCCCCCEEEEEEEC
T ss_conf 757988642799967
No 102
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=91.82 E-value=1.2 Score=24.89 Aligned_cols=44 Identities=32% Similarity=0.560 Sum_probs=35.3
Q ss_pred HHHHHHHHCCCCC-CEEEECCCCCCHHHHHHHHHC--CEEEEECCCH
Q ss_conf 9868866083888-889983768828899999748--9099980998
Q gi|255764511|r 25 LEKVIALLNPAPG-KVILDATFGAGGYSRSFCKMG--SNVIALDRDP 68 (341)
Q Consensus 25 l~Evl~~l~~~~~-g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~ 68 (341)
|.|+.+-+...+. ..++|--.+-||-|+.+++.+ ++++|+|..+
T Consensus 9 L~ei~~~~~l~~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~ 55 (176)
T pfam01728 9 LLEIDERFGLKPGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGP 55 (176)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99999976988799999996899976999999856687399997344
No 103
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=91.77 E-value=1.2 Score=24.86 Aligned_cols=94 Identities=19% Similarity=0.203 Sum_probs=65.0
Q ss_pred HHHHHH-HHHCC---CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCC-EEEECCCHHHHHH
Q ss_conf 098688-66083---8888899837688288999997489-0999809989999999985214885-2771132788987
Q gi|255764511|r 24 LLEKVI-ALLNP---APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQ-FSLFQATFSQLQD 97 (341)
Q Consensus 24 ll~Evl-~~l~~---~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r-~~~~~~~F~~i~~ 97 (341)
.++|.+ +.|.. -.+..++|.=-|.|.-+..-|.++. +++.+|.|..|+...++.++..+.. -.+....+..+..
T Consensus 27 rvrEalFniL~~~~~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~~ 106 (181)
T pfam03602 27 RVREALFNILAPYFELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLR 106 (181)
T ss_pred HHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH
T ss_conf 89999997501345548987998278726989999976998899996999999999999998589977998108999987
Q ss_pred HHH-HCCCCEEEEECCCHHHH
Q ss_conf 653-12332478622520788
Q gi|255764511|r 98 YVP-DKGVDGVVFDLGVSSMQ 117 (341)
Q Consensus 98 ~l~-~~~vdgIl~DLGvSS~Q 117 (341)
... ...+|-|++|==|....
T Consensus 107 ~~~~~~~fdiIF~DPPY~~~~ 127 (181)
T pfam03602 107 LAGKGPPFDLVFLDPPYAKGL 127 (181)
T ss_pred HCCCCCCCCEEECCCCCCCHH
T ss_conf 533578887663599754206
No 104
>TIGR00426 TIGR00426 competence protein ComEA helix-hairpin-helix repeat region; InterPro: IPR004509 This domain is found in competence protein ComEA and closely related proteins from a number of species that exhibit competence for transformation by exongenous DNA, including Streptococcus pneumoniae, Bacillus subtilis, Neisseria meningitidis, and Haemophilus influenzae. This domain represents a region of two tandem copies of a helix-hairpin-helix domain, each about 30 residues in length. Limited sequence similarity can be found among some members of this family N-terminal to this domain..
Probab=91.76 E-value=0.13 Score=31.10 Aligned_cols=43 Identities=33% Similarity=0.524 Sum_probs=37.4
Q ss_pred HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 986222578998999744630268899999999752-124321379999
Q gi|255764511|r 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194 (341)
Q Consensus 147 iln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~-~~i~TT~eL~~i 194 (341)
=||+++-+||.+-+---| -+=|.|||.||++ ++|.|..||.++
T Consensus 10 nINtAtaeElq~~~~GvG-----~kKAeAIv~YREe~G~F~t~Edl~~V 53 (70)
T TIGR00426 10 NINTATAEELQKALSGVG-----AKKAEAIVAYREEYGRFKTVEDLKKV 53 (70)
T ss_pred ECCHHCHHHHHHHHCCCC-----HHHHHHHHHHHHCCCCCCCHHHHHHC
T ss_conf 101104788887642887-----23789998875327795762223214
No 105
>KOG2904 consensus
Probab=91.73 E-value=1.2 Score=24.93 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=89.5
Q ss_pred HHHHHHHHC---CCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH--H
Q ss_conf 986886608---388888998376882889999974--890999809989999999985214--8852771132788--9
Q gi|255764511|r 25 LEKVIALLN---PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ--L 95 (341)
Q Consensus 25 l~Evl~~l~---~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~--i 95 (341)
++-|++.++ -..+..++|.-.|.|--|.++|.. .+.++|+|+-+.||..|.++.+.+ .+++-.+|..... .
T Consensus 134 V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~ 213 (328)
T KOG2904 134 VEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS 213 (328)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 99999997556532666688705783188999983478734899853288999999889987415846898412220125
Q ss_pred HHH-HHHCCCCEEEEECCCHHHH----HHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHH------HHHHHHC
Q ss_conf 876-5312332478622520788----8765407344566410104355684189998622257899------8999744
Q gi|255764511|r 96 QDY-VPDKGVDGVVFDLGVSSMQ----IDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLT------RILGILG 164 (341)
Q Consensus 96 ~~~-l~~~~vdgIl~DLGvSS~Q----ld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~------~i~~~yG 164 (341)
..+ +...++|+++-+=-|=..| ++-.-|- |..-.-|| .|....+++-.|..-.-. .++.+++
T Consensus 214 ~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~--yEp~lALd-----Gg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904 214 DEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRL--YEPKLALD-----GGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred CCCCCCCCCEEEEECCCCCCCCCCHHHCCCHHEE--CCCHHHHC-----CCCCHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 6554545752488538996555512232713302--37445430-----6663269999998766754566885889733
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 63026889999999975212432137999999
Q gi|255764511|r 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 (341)
Q Consensus 165 ee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~ 196 (341)
+++...-+.+.|...+ ..-+.-.+.++.
T Consensus 287 ~~~~~~~lv~~~m~s~----~~d~~~~~~v~~ 314 (328)
T KOG2904 287 ERKEHSYLVRIWMISL----KDDSNGKAAVVS 314 (328)
T ss_pred CCCCCCHHHHHHHHHC----HHHCCCHHHEEE
T ss_conf 5566819999998713----220132133144
No 106
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=90.93 E-value=1.2 Score=24.73 Aligned_cols=104 Identities=26% Similarity=0.293 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHC---CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CC-EEEECCCHHHH
Q ss_conf 400986886608---3888889983768828899999748909998099899999999852148--85-27711327889
Q gi|255764511|r 22 PVLLEKVIALLN---PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQ-FSLFQATFSQL 95 (341)
Q Consensus 22 PVll~Evl~~l~---~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r-~~~~~~~F~~i 95 (341)
-+|....++.|. +..|..++||=.|.|==|..+=+.|.+|.|+|.=+..+..|+++.++-. +| +.|.-+....+
T Consensus 37 ~~~~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~ 116 (224)
T TIGR02021 37 AAMREKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESL 116 (224)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHH
T ss_conf 99999999854678898767777558893154498884798686623768999999862100210167003545304441
Q ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 876531233247862252078887654073445664101043556841899986222578998999744
Q gi|255764511|r 96 QDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILG 164 (341)
Q Consensus 96 ~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yG 164 (341)
. -..+|.|+. .|+|=.|+.++....|-+-+
T Consensus 117 ~----~G~fD~VV~-----------------------------------mDvlIHYp~~d~~~~l~~La 146 (224)
T TIGR02021 117 E----LGKFDAVVA-----------------------------------MDVLIHYPAEDIAKALEHLA 146 (224)
T ss_pred C----CCCCCEEEE-----------------------------------EHHHHHCCHHHHHHHHHHHH
T ss_conf 3----898555675-----------------------------------21223202222799999988
No 107
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=90.90 E-value=1.1 Score=25.11 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=59.3
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf 8688660838888899837688288999997489-099980998999999998521488527711327889876531233
Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 (341)
Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~v 104 (341)
.+|++...+-..+-.+|-=.|. ||-.-+|...| -|-|+|.-+.||+.-.+..+. +++.-++..--+|....-+.++
T Consensus 63 s~v~eAvk~v~PcKtLDLGCGq-GrNsLyLsl~GYDV~awD~n~~siA~v~~~k~~--EnL~nl~t~~yDiNaa~~~e~Y 139 (239)
T TIGR00477 63 SEVLEAVKVVKPCKTLDLGCGQ-GRNSLYLSLAGYDVDAWDHNEASIASVEEIKEK--ENLDNLRTDVYDINAAALDEDY 139 (239)
T ss_pred HHHHHHHHCCCCCCEEECCCCC-CHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCCC
T ss_conf 7777555023798653268888-537899976168410121686688759988876--2671100465543355401278
Q ss_pred CEEEE
Q ss_conf 24786
Q gi|255764511|r 105 DGVVF 109 (341)
Q Consensus 105 dgIl~ 109 (341)
|+|+.
T Consensus 140 DFI~s 144 (239)
T TIGR00477 140 DFILS 144 (239)
T ss_pred CEEEE
T ss_conf 74210
No 108
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=90.75 E-value=0.51 Score=27.22 Aligned_cols=12 Identities=17% Similarity=0.003 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999998521
Q gi|255764511|r 69 FAVSCGQETMRD 80 (341)
Q Consensus 69 ~ai~~a~~~l~~ 80 (341)
.|+..+-+.|.+
T Consensus 73 ~Al~~al~lL~~ 84 (140)
T pfam06962 73 EAIKKLLELLKP 84 (140)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999996366
No 109
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.54 E-value=0.35 Score=28.31 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=53.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCC-CCCC
Q ss_conf 876651340578999999885202445338998725502389999998641788777656778777754045248-6547
Q gi|255764511|r 216 ALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITK-KVVV 294 (341)
Q Consensus 216 ALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~~~~~~~~~~~~~~~~~~~~~~l~k-kpi~ 294 (341)
+||.. ...+++|..+..+|+||||++|+.|+.-+.-.++.++..+..+..-|..-.........|.-+.. ----
T Consensus 128 glrnv-----~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~ 202 (238)
T COG2226 128 GLRNV-----TDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRF 202 (238)
T ss_pred HHHCC-----CCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHHHHHHC
T ss_conf 23527-----8789999999876268749999876899860169999999997476562121106849999999888858
Q ss_pred CCHHHHHHCCCC
Q ss_conf 888999828710
Q gi|255764511|r 295 PTQEDVAFNRRS 306 (341)
Q Consensus 295 PS~~Ei~~NpRS 306 (341)
|+++|+...-+.
T Consensus 203 p~~~~l~~~~~~ 214 (238)
T COG2226 203 PDQEELKQMIEK 214 (238)
T ss_pred CCHHHHHHHHHH
T ss_conf 998999999986
No 110
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=90.52 E-value=1.6 Score=24.09 Aligned_cols=47 Identities=21% Similarity=0.391 Sum_probs=40.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 88888998376882889999974890999809989999999985214
Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 (341)
Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~ 81 (341)
.++..++|.-.|+|-=|+.+-..+.+|+|+|..+++|..|+..-.+-
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~ 104 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALES 104 (243)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 77770887458832864999977994697438767789998754424
No 111
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=90.30 E-value=0.8 Score=25.98 Aligned_cols=56 Identities=20% Similarity=0.187 Sum_probs=44.2
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 86886608388888998376882889999974890999809989999999985214
Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 (341)
Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~ 81 (341)
.||+......+.|..+|--.|.|--|..+-..+-.|-|+|..+.+|...++..+..
T Consensus 112 Sev~~a~~~i~pgkaLDLGCG~GRNsLyLa~~GfdVTA~D~N~~sl~~L~~ia~~E 167 (289)
T PRK12335 112 SEVLEAAKTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQASLENLQQIAEKE 167 (289)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf 99999875268874666047888227889757984258868999999999999971
No 112
>KOG2899 consensus
Probab=90.19 E-value=0.44 Score=27.64 Aligned_cols=144 Identities=21% Similarity=0.231 Sum_probs=80.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHC-C-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 88889983768828899999748-9-099980998999999998521488527711327889876531233247862252
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMG-S-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~-~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341)
.+...+|--.-.|--|.+|-+.. + .++|+|.|+.-|..|.+.++.+.+.-.... .+..+-+|+
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~---------------~~~~~~~~~ 122 (288)
T KOG2899 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVS---------------GKFPASFGV 122 (288)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCC---------------CCCCCCCCC
T ss_conf 76205750677546589999860643346761568999999973566010103345---------------787543354
Q ss_pred HHHHHHHHHHCCC---CCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 0788876540734---4566410104355684189998622257899899974463026889999999975212432137
Q gi|255764511|r 114 SSMQIDCGDRGFS---FQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 (341)
Q Consensus 114 SS~Qld~~~RGFS---f~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~e 190 (341)
++.-+.+ |-|+ +..+-|+|-- -.+.+..+ ++.|
T Consensus 123 ~~~~is~--~~~a~~a~t~~~p~n~~-----------------------------------------f~~~n~vl-e~~d 158 (288)
T KOG2899 123 QFGPISQ--RNEADRAFTTDFPDNVW-----------------------------------------FQKENYVL-ESDD 158 (288)
T ss_pred CCCCCCC--CCCCCCCCCCCCCCCHH-----------------------------------------CCCCCEEE-ECCH
T ss_conf 4454101--24466510036772010-----------------------------------------13233798-6004
Q ss_pred HHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 999999887643127712--5788888876651340578999999885202445338998
Q gi|255764511|r 191 LSSLIQKTVYFSKNNRIH--PATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 (341)
Q Consensus 191 L~~iI~~~~~~~~~~k~h--patr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VI 248 (341)
+.+.+... ..-+- ..|+ =|..|.-=+-|.+++.++..+|.|||+|+|=
T Consensus 159 fl~~~~~~-----fDiIlcLSiTk-----WIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899 159 FLDMIQPE-----FDIILCLSITK-----WIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred HHHHCCCC-----CCEEEEEEEEE-----EEECCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 55505654-----22799977334-----6764564578999999999860868579975
No 113
>PRK03612 spermidine synthase; Provisional
Probab=90.06 E-value=1.6 Score=24.03 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=53.2
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHH--HHHC------CCCEEEECCC-HHHHHHHHHH
Q ss_conf 838888899837688288999997489--099980998999999998--5214------8852771132-7889876531
Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET--MRDY------KEQFSLFQAT-FSQLQDYVPD 101 (341)
Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~--l~~~------~~r~~~~~~~-F~~i~~~l~~ 101 (341)
.+.|..+.| .-.|.|+-.+++|+..+ ++.-.|.||+.++.+++. +.+. ..|+++++.. |.-+.+ . .
T Consensus 291 ~~~p~~VLi-iGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~-~-~ 367 (516)
T PRK03612 291 SPRARRVLI-LGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-L-P 367 (516)
T ss_pred CCCCCEEEE-ECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHH-C-C
T ss_conf 999773899-837760879998648996637899518899999985721444412323499648985378999986-8-8
Q ss_pred CCCCEEEEECC
Q ss_conf 23324786225
Q gi|255764511|r 102 KGVDGVVFDLG 112 (341)
Q Consensus 102 ~~vdgIl~DLG 112 (341)
..+|-|+.|+=
T Consensus 368 ~~yDvIi~D~p 378 (516)
T PRK03612 368 ETFDAIIVDLP 378 (516)
T ss_pred CCCCEEEEECC
T ss_conf 87888998189
No 114
>PRK08317 hypothetical protein; Provisional
Probab=89.59 E-value=0.64 Score=26.61 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEE-------ECCCHHHHHHHHHHHH
Q ss_conf 5789999998852024453389987-------2550238999999864
Q gi|255764511|r 225 IEELAQGLRSAEKALKAGGLLIVVS-------FHSLEDRLVKKFFASR 265 (341)
Q Consensus 225 l~~L~~~L~~~~~~L~~gGrl~VIS-------FHSLEDRiVK~ff~~~ 265 (341)
+.+.+.+|..+..+|+|||+++|+. |||-+..+....+..+
T Consensus 100 ~~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~~~~~~~~i~~~~ 147 (241)
T PRK08317 100 LEDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSGDRALMRKILNFW 147 (241)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 258999999999981888389999667886742898889999999999
No 115
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=89.46 E-value=1.8 Score=23.77 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=51.6
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEEEC
Q ss_conf 7688288----9999974890999809989999999985214885277113278898---7653----1-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+..||+++.+..+.+.+++.+.++.++..+.++.+ +.+. . .++|.++..-
T Consensus 12 TGgs~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lvnnA 91 (253)
T PRK12826 12 TGAARGIGRAIAVRFAADGADVIVVDICGQAAAATAELVAAAGGKARAYQVDVRDRAALKALVAAGVERFGRLDILVANA 91 (253)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 48977899999999998799899998988999999999985099589999517999999999999999839987899899
Q ss_pred CCHH
Q ss_conf 5207
Q gi|255764511|r 112 GVSS 115 (341)
Q Consensus 112 GvSS 115 (341)
|+..
T Consensus 92 g~~~ 95 (253)
T PRK12826 92 GIFP 95 (253)
T ss_pred CCCC
T ss_conf 8899
No 116
>PRK07832 short chain dehydrogenase; Provisional
Probab=89.44 E-value=1.9 Score=23.53 Aligned_cols=147 Identities=15% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCE-EEEC---CCHHHHHHHHHH-----CCCCEEEEE
Q ss_conf 768828899----999748909998099899999999852148852-7711---327889876531-----233247862
Q gi|255764511|r 44 TFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQF-SLFQ---ATFSQLQDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 44 TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~-~~~~---~~F~~i~~~l~~-----~~vdgIl~D 110 (341)
|-|.+|=-+ .+.+.+.+|+..|||++.++...+.+...+... ..+. ++.+.+...... ..+|.++-+
T Consensus 6 TGassGIG~a~A~~la~~Ga~v~l~~r~~~~l~~~~~~l~~~g~~~~~~~~~Dvsd~~~v~~~~~~~~~~~g~iDiLiNN 85 (272)
T PRK07832 6 TGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHPSMDVVMNI 85 (272)
T ss_pred ECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 47201999999999998899899998988999999999984589714788566899999999999999972998889987
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 25207888765407344566410104355684189998622257899899974--4630268899999999752124321
Q gi|255764511|r 111 LGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL--GEEKQASRIAHAIVKRRQSAPFQTT 188 (341)
Q Consensus 111 LGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~y--Gee~~a~~IA~~Iv~~R~~~~i~TT 188 (341)
=|++. ..-+...+.++..++|... |-..-.+......++.++.+.|..+
T Consensus 86 AGi~~-----------------------------~g~~~~~~~~~~~~~~~vN~~g~~~~~~~~lp~m~~~~~~G~IVni 136 (272)
T PRK07832 86 AGISA-----------------------------WGTVDRLTHEQWRRMVDINLMGPIHVIETFVPPMVAAGRGGHLVNV 136 (272)
T ss_pred CCCCC-----------------------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87688-----------------------------8873458999999999987289999999999999983899689997
Q ss_pred HHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHH
Q ss_conf 37999999887643-12-77125788888876651
Q gi|255764511|r 189 QDLSSLIQKTVYFS-KN-NRIHPATRSFQALRIFV 221 (341)
Q Consensus 189 ~eL~~iI~~~~~~~-~~-~k~hpatr~FQALRI~V 221 (341)
.-++..+- .++. -+ .-+|-..--.++||.++
T Consensus 137 sS~ag~~~--~p~~~~Y~ASK~av~g~~esL~~El 169 (272)
T PRK07832 137 SSAAGLVG--LPWHAAYSASKYGLRGLSEVLRFDL 169 (272)
T ss_pred CCHHHCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 57775568--9998029999999999999999985
No 117
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.07 E-value=0.94 Score=25.52 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=43.3
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHH---HHHH-----CCCCEEEEECCCH
Q ss_conf 99999748909998099899999999852148852771132788987---6531-----2332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVPD-----KGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~---~l~~-----~~vdgIl~DLGvS 114 (341)
++.+.+.+.+|+..|||++.+....+.+++.+.+...+..+.++-++ .... ..+|..+-+=|++
T Consensus 23 A~~~A~~Ga~Vvl~~R~~~~L~~~a~e~~~~G~~~~~v~~DVsd~~~v~~~~~~~~~~~G~IDiLVNNAGi~ 94 (324)
T PRK06139 23 AEAFARRGARLVLAARDEEALFEVAEECRALGAEVLVVPTDVTHADQVQALATQAASFLGRIDVWFNNVGVG 94 (324)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 999998799899998999999999999995499489997667885789999999999749987886457557
No 118
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=88.55 E-value=1.7 Score=23.79 Aligned_cols=56 Identities=13% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH
Q ss_conf 9868866083888889983768828899999748--9099980998999999998521
Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~ 80 (341)
..|.++.+-+.+-.-++|--.|-|--|+.+..+. ..+.|||-+++++..|..++-+
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~ 76 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD 76 (257)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCC
T ss_conf 8899864786664103455778877889999868888676046999999999974899
No 119
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein; InterPro: IPR005768 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The later are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homolog proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight families of clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homolog with catalytic activity. ; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space.
Probab=88.49 E-value=0.71 Score=26.31 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=63.6
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHH--CC-CCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCC-
Q ss_conf 7489099980998999999998521--48-8527711327889876531233247862252078887654073445664-
Q gi|255764511|r 56 KMGSNVIALDRDPFAVSCGQETMRD--YK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSG- 131 (341)
Q Consensus 56 ~~~~~liaiDrD~~ai~~a~~~l~~--~~-~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dg- 131 (341)
...|+++|||.| -+-..|++...+ +. -.++|...+|+.+-.-|...+||.|+.+ ++|-.- .-++.++|..--
T Consensus 44 ~a~G~~~GFDvD-l~~alc~~~~gD~GWdh~~c~~~~~~~~~liPsL~~k~~Dai~an-~~~It~--~R~~~i~F~~~yy 119 (333)
T TIGR01096 44 DADGKLVGFDVD-LANALCKEMKGDPGWDHAKCKFVEQAFDGLIPSLKAKKVDAIMAN-AMSITD--ERQKQIDFSDPYY 119 (333)
T ss_pred CCCCCEEEHHHH-HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHCCCEEEEEEC-CCCCCH--HHHHHHCCCCCCC
T ss_conf 889545632678-999999984589996431488842756652025453806899726-655466--5663211443000
Q ss_pred CEECCC----CCCCCCHHHHHHHCCHHHHHHH
Q ss_conf 101043----5568418999862225789989
Q gi|255764511|r 132 PLDMRM----SCSGISASDVVNQANVKDLTRI 159 (341)
Q Consensus 132 pLDMRm----d~~~~tA~eiln~~s~~~L~~i 159 (341)
-=++++ |..-.+..+-+..||-+..+.-
T Consensus 120 ~~~~~f~v~~~~~~~~~~~~~E~~~Ld~~A~~ 151 (333)
T TIGR01096 120 ATGAGFVVKKDSDLAKTLEDGENYSLDNQADA 151 (333)
T ss_pred CCCCEEEEECCCCCCCCHHHHCCCCCCCCCHH
T ss_conf 04430222248875431453303672000379
No 120
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=88.05 E-value=2.4 Score=22.94 Aligned_cols=79 Identities=16% Similarity=0.185 Sum_probs=58.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHCCC-------CEEEECCCHHHHHHHHHHC--CCC
Q ss_conf 88889983768828899999748-9099980998999999998521488-------5277113278898765312--332
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKE-------QFSLFQATFSQLQDYVPDK--GVD 105 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~~~-------r~~~~~~~F~~i~~~l~~~--~vd 105 (341)
.+.-++|+=-|.|+=.-.=|.++ .+++.+|+|..+...-.++++..++ .-.+.++.+..+...+... .+|
T Consensus 55 ~~~~~LD~FAGsG~LG~EALSRgA~~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~~~~~~~~~~~~~~~~~~~~~ts~~d 134 (210)
T TIGR00095 55 VGAHFLDLFAGSGSLGLEALSRGAKSAVFVEQDKKVAQTLKENLSTLKNRLKLSGEQATVLNDAERALLFLAKKQTSPFD 134 (210)
T ss_pred CCCEEEEEECCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHCCCCCCEE
T ss_conf 68727885406446537664014162378736867999999999998887158530000000256665776517996114
Q ss_pred EEEEECCCH
Q ss_conf 478622520
Q gi|255764511|r 106 GVVFDLGVS 114 (341)
Q Consensus 106 gIl~DLGvS 114 (341)
.|++|==+.
T Consensus 135 ~iylDPPf~ 143 (210)
T TIGR00095 135 IIYLDPPFN 143 (210)
T ss_pred EEEECCCCC
T ss_conf 787148888
No 121
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=87.63 E-value=1.5 Score=24.30 Aligned_cols=182 Identities=18% Similarity=0.251 Sum_probs=111.5
Q ss_pred CCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 776432011011607833400986886608388888998376882889999974---89099980998999999998521
Q gi|255764511|r 4 KSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 4 ~~~~~m~~~~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
++-+.|++-|+.. .|.. --++++..++.+.|...+|...|.+--+-++-+. .|.|.|+|--..++..+++..++
T Consensus 16 ~~yd~mnsvis~~--~h~~-Wr~~~m~~m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~ 92 (231)
T TIGR02752 16 KKYDRMNSVISFQ--RHKK-WRKDTMKRMNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKD 92 (231)
T ss_pred HHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHH
T ss_conf 7543577788889--8888-999998776564041211210373378889888617777167400358899999988875
Q ss_pred C-CCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHH----HHH-HHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHH
Q ss_conf 4-8852771132788987653123324786225207----888-765407344566410104355684189998622257
Q gi|255764511|r 81 Y-KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS----MQI-DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVK 154 (341)
Q Consensus 81 ~-~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS----~Ql-d~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~ 154 (341)
. -.++.+.|+|--++. ..+..+|.+-.-+|.-. +|+ ..-.|= .+..|. =.-++++.++..-+-.-| .-
T Consensus 93 ~~~~~~~l~hGnam~lP--~~~~~fdyvtiGfGlrnvPdy~~vl~em~rv--~kPGG~-~~C~~tsqP~~~~~~q~y-~~ 166 (231)
T TIGR02752 93 AKLSNVELVHGNAMELP--YDDNSFDYVTIGFGLRNVPDYMTVLKEMARV--VKPGGK-VVCLETSQPTLPGFKQLY-FF 166 (231)
T ss_pred HHHHHEEEECCCHHCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHH--HCCCCC-EEEEECCCCCHHHHHHHH-HH
T ss_conf 43200222305200178--7766612577525512302699999998886--279971-798625776257999999-99
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH----HHHCCCCCHHHHHHHHHHHH
Q ss_conf 8998999744630268899999999----75212432137999999887
Q gi|255764511|r 155 DLTRILGILGEEKQASRIAHAIVKR----RQSAPFQTTQDLSSLIQKTV 199 (341)
Q Consensus 155 ~L~~i~~~yGee~~a~~IA~~Iv~~----R~~~~i~TT~eL~~iI~~~~ 199 (341)
-...|+--+| +-+|+.--.+ -....+....+|+++...+.
T Consensus 167 yf~~~mP~~G-----k~~ak~y~eysWlqes~~~fPG~~~l~~~f~~~G 210 (231)
T TIGR02752 167 YFKYIMPLFG-----KLFAKSYKEYSWLQESAREFPGKDELAEMFKEAG 210 (231)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 9999988777-----8886433455777777651786789999998527
No 122
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=87.36 E-value=2.6 Score=22.68 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=48.8
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCH---------HHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHHCCCCHH-----
Q ss_conf 99862225789989997446302---------6889999999975212--4321379999998876431277125-----
Q gi|255764511|r 146 DVVNQANVKDLTRILGILGEEKQ---------ASRIAHAIVKRRQSAP--FQTTQDLSSLIQKTVYFSKNNRIHP----- 209 (341)
Q Consensus 146 eiln~~s~~~L~~i~~~yGee~~---------a~~IA~~Iv~~R~~~~--i~TT~eL~~iI~~~~~~~~~~k~hp----- 209 (341)
+=|..+-...|..|+.+-+=.+- |.-+|....+...-+. |+...+=.+.+..-+.+. .-.+.-
T Consensus 146 ~tLe~AQ~~Kl~~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~g~~VtgiTlS~eQ~~~a~~r~~gl-~v~v~l~DYRd 224 (383)
T PRK11705 146 DTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRD 224 (383)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCC-CCEEEECCHHH
T ss_conf 99999999999999986489999979885787499999999974975999858899999999997389-87899715244
Q ss_pred HHHHHHHHH-HHHCC--CHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 788888876-65134--057899999988520244533899872
Q gi|255764511|r 210 ATRSFQALR-IFVNN--EIEELAQGLRSAEKALKAGGLLIVVSF 250 (341)
Q Consensus 210 atr~FQALR-I~VN~--El~~L~~~L~~~~~~L~~gGrl~VISF 250 (341)
..-.|-++= |+.=. --+.+...+..+.++|+|||++++=|.
T Consensus 225 ~~g~fD~IvSIeM~EhVG~~~~~~yF~~i~~lLkp~G~~~lqtI 268 (383)
T PRK11705 225 LNGQFDRIVSVGMFEHVGPKNYRTYFEVVDRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 36773559997148652877799999999985699973999993
No 123
>KOG1709 consensus
Probab=87.35 E-value=2.6 Score=22.67 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=58.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 388888998376882889999974890-9998099899999999852148852771132788987653123324786225
Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 (341)
Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341)
..+||.++..-||-|=-..+|-++.+. -.-|..-|+..++-++-----.+++.++.+...+..+-++.+.||||++|-=
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy 178 (271)
T KOG1709 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY 178 (271)
T ss_pred HHCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCCCCCCCEEEEECH
T ss_conf 61796489842316778888863598631787359789999986366544546887134676440144567562675130
No 124
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=87.00 E-value=2.5 Score=22.77 Aligned_cols=68 Identities=31% Similarity=0.540 Sum_probs=51.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHH---HHHHHHH-----
Q ss_conf 388888998376882889999974---8909998099899999999852148-852771132788---9876531-----
Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQ---LQDYVPD----- 101 (341)
Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~---i~~~l~~----- 101 (341)
+++|.++||-=---||-|+..+.. .|.|||+|..| .+.|+ ++|.++++.|.. ++.++..
T Consensus 30 ik~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~---------~k~FP~~nv~fi~GDftdee~l~ki~~~~g~de 100 (192)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQP---------MKGFPIENVDFIRGDFTDEEVLNKILERVGDDE 100 (192)
T ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCC---------CCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 10788678657898738778877606853389985455---------788564661475447678789999998578987
Q ss_pred CCCCEEEEE
Q ss_conf 233247862
Q gi|255764511|r 102 KGVDGVVFD 110 (341)
Q Consensus 102 ~~vdgIl~D 110 (341)
.++|-|+=|
T Consensus 101 kk~DVV~SD 109 (192)
T TIGR00438 101 KKVDVVMSD 109 (192)
T ss_pred CEEEEEEEC
T ss_conf 437789852
No 125
>KOG1541 consensus
Probab=86.75 E-value=1.7 Score=23.94 Aligned_cols=53 Identities=28% Similarity=0.373 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCC--CCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHH
Q ss_conf 0986886608388--888998376882889999974-89099980998999999998
Q gi|255764511|r 24 LLEKVIALLNPAP--GKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQET 77 (341)
Q Consensus 24 ll~Evl~~l~~~~--~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~ 77 (341)
|..-.++.|.... .+.++|--.|. |-|-++|.. +..++|+|.-|.++..|.++
T Consensus 36 m~eRaLELLalp~~~~~~iLDIGCGs-GLSg~vL~~~Gh~wiGvDiSpsML~~a~~~ 91 (270)
T KOG1541 36 MAERALELLALPGPKSGLILDIGCGS-GLSGSVLSDSGHQWIGVDISPSMLEQAVER 91 (270)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCC-CCCHHEECCCCCEEEEECCCHHHHHHHHHH
T ss_conf 88878987608998871799834577-743200216895588622898999999976
No 126
>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]
Probab=86.53 E-value=0.44 Score=27.66 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=34.0
Q ss_pred HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 986222578998999744630268899999999752-124321379999
Q gi|255764511|r 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194 (341)
Q Consensus 147 iln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~-~~i~TT~eL~~i 194 (341)
=||+.|.++| .-+-.-| .+.|.+|+.+|++ ++|.+..||..+
T Consensus 90 NiNtAs~eeL-~~lpgIG-----~~kA~aIi~yRe~~G~f~sv~dL~~v 132 (149)
T COG1555 90 NINTASAEEL-QALPGIG-----PKKAQAIIDYREENGPFKSVDDLAKV 132 (149)
T ss_pred CCCCCCHHHH-HHCCCCC-----HHHHHHHHHHHHHCCCCCCHHHHCCC
T ss_conf 6661089999-8867989-----99999999999973997657887107
No 127
>KOG1975 consensus
Probab=85.88 E-value=0.81 Score=25.93 Aligned_cols=103 Identities=23% Similarity=0.386 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHCCCCEE--------EECCCH
Q ss_conf 4009868866083888889983768828899999748-9099980998999999998521488527--------711327
Q gi|255764511|r 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFS--------LFQATF 92 (341)
Q Consensus 22 PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~~~r~~--------~~~~~F 92 (341)
.||.++-. +++..+.|.-.|-||.-..-.+++ +.+||+|.-..+|.-|++|-++-.+|+. +.-.+|
T Consensus 108 s~LI~~y~-----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975 108 SVLINLYT-----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHH-----CCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 99999986-----1223000005677620767655145635765343400999999999998666413651699971441
Q ss_pred HH-HHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 88-9876531233247862252078887654073445664101043
Q gi|255764511|r 93 SQ-LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 (341)
Q Consensus 93 ~~-i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRm 137 (341)
.. +.+.++...-. | -+.|-|+- =-.||..+...||-|
T Consensus 183 ~~~l~d~~e~~dp~---f--DivScQF~---~HYaFetee~ar~~l 220 (389)
T KOG1975 183 KERLMDLLEFKDPR---F--DIVSCQFA---FHYAFETEESARIAL 220 (389)
T ss_pred HHHHHHHCCCCCCC---C--CEEEEEEE---EEEEECCHHHHHHHH
T ss_conf 66898742578988---5--55655456---754313388899999
No 128
>KOG1540 consensus
Probab=85.71 E-value=3.2 Score=22.12 Aligned_cols=181 Identities=18% Similarity=0.292 Sum_probs=114.6
Q ss_pred CCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--C------CEEEEECCCHHHHHHHHHH
Q ss_conf 6432011011607833400986886608388888998376882889999974--8------9099980998999999998
Q gi|255764511|r 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--G------SNVIALDRDPFAVSCGQET 77 (341)
Q Consensus 6 ~~~m~~~~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~------~~liaiDrD~~ai~~a~~~ 77 (341)
-+.|+-+|+. +-|. +--+-.++.|.|.++.-++|.--|.|--+--||+. . ++|+..|+-|+++..+++|
T Consensus 73 YD~mND~mSl--GiHR-lWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqR 149 (296)
T KOG1540 73 YDIMNDAMSL--GIHR-LWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQR 149 (296)
T ss_pred HHHHHHHHHC--CHHH-HHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 8778887621--2367-888876621587778758983477525677798761134577776179993898999999877
Q ss_pred HHH--CC--CCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC----CCCCCC--EECCCCCCC-CCHHH
Q ss_conf 521--48--85277113278898765312332478622520788876540734----456641--010435568-41899
Q gi|255764511|r 78 MRD--YK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS----FQKSGP--LDMRMSCSG-ISASD 146 (341)
Q Consensus 78 l~~--~~--~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFS----f~~dgp--LDMRmd~~~-~tA~e 146 (341)
-++ +. .++.++.++-.++. .+...+|....-.|+-. .-+++||.. -.+-|- +=|-+.... .+-..
T Consensus 150 a~~~~l~~~~~~~w~~~dAE~Lp--Fdd~s~D~yTiafGIRN--~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~ 225 (296)
T KOG1540 150 AKKRPLKASSRVEWVEGDAEDLP--FDDDSFDAYTIAFGIRN--VTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKW 225 (296)
T ss_pred HHHCCCCCCCCEEEEECCCCCCC--CCCCCCEEEEEECCEEC--CCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH
T ss_conf 75159776871699947701089--99775115888421114--787789999998752778679999735454077899
Q ss_pred HHHHCCHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 986222578998999744630268899-99999975212432137999999887
Q gi|255764511|r 147 VVNQANVKDLTRILGILGEEKQASRIA-HAIVKRRQSAPFQTTQDLSSLIQKTV 199 (341)
Q Consensus 147 iln~~s~~~L~~i~~~yGee~~a~~IA-~~Iv~~R~~~~i~TT~eL~~iI~~~~ 199 (341)
+-+.|+.+-|-.+=.-+...+.+..+- ..| ..+.+..+++.+|+.+-
T Consensus 226 fy~~ysf~VlpvlG~~iagd~~sYqYLveSI------~rfp~qe~f~~miedaG 273 (296)
T KOG1540 226 FYDQYSFDVLPVLGEIIAGDRKSYQYLVESI------RRFPPQEEFASMIEDAG 273 (296)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH------HCCCCHHHHHHHHHHCC
T ss_conf 9971222321105576652176545477665------06998899999999728
No 129
>PRK07109 short chain dehydrogenase; Provisional
Probab=84.83 E-value=3.5 Score=21.86 Aligned_cols=138 Identities=14% Similarity=0.212 Sum_probs=68.4
Q ss_pred HCCCCCCE-EEECCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCE
Q ss_conf 08388888-99837688288----99999748909998099899999999852148852771132788987653123324
Q gi|255764511|r 32 LNPAPGKV-ILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 (341)
Q Consensus 32 l~~~~~g~-~iD~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdg 106 (341)
+.+..+.+ +| |-+.+|= ++.+.+.+.+|+.++|++++++...+.++..+.+...+...-++-+++-.- ++
T Consensus 3 ~k~l~~KvVvI--TGASsGIGra~A~~fA~~Ga~Vvl~aR~~~~L~~~a~e~~~~G~~~~~~~~DVsd~~~v~~~--~~- 77 (338)
T PRK07109 3 LKPLGRQVVVI--TGASAGVGRATARAFARRGAKVVLLARGEEGLEGLAAEIRAAGGEALAVVADVADAEAVQAA--AD- 77 (338)
T ss_pred CCCCCCCEEEE--ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHH--HH-
T ss_conf 96069898999--48434999999999998799899998999999999999996398189998017999999999--99-
Q ss_pred EEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHH---HHHHHC
Q ss_conf 78622520788876540734456641010435568418999862225789989997446302688999999---997521
Q gi|255764511|r 107 VVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIV---KRRQSA 183 (341)
Q Consensus 107 Il~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv---~~R~~~ 183 (341)
... ..-|++|+=.|..|+....-+...+.++..+++...- .-.-..+++.+ ..|..+
T Consensus 78 -------------~~~-----~~~G~IDvlVNNAGi~~~g~~~~~~~e~~~~vi~vNl--~G~v~~t~aaLp~m~~~~~G 137 (338)
T PRK07109 78 -------------RAE-----EELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTDVTY--LGVVHGTLAALRHMRPRDRG 137 (338)
T ss_pred -------------HHH-----HHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCC
T ss_conf -------------999-----9849988886546667787632299999999987751--89999999999999867997
Q ss_pred CCCCHHHHHHH
Q ss_conf 24321379999
Q gi|255764511|r 184 PFQTTQDLSSL 194 (341)
Q Consensus 184 ~i~TT~eL~~i 194 (341)
.|..+.-.+..
T Consensus 138 ~IInvsSvag~ 148 (338)
T PRK07109 138 AIIQVGSALAY 148 (338)
T ss_pred EEEEECCHHHC
T ss_conf 89998895554
No 130
>KOG1122 consensus
Probab=81.41 E-value=4 Score=21.46 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=22.5
Q ss_pred HHHHHHHHHCCCCCCEEEEEEECC---CHHHHHHHHH
Q ss_conf 999998852024453389987255---0238999999
Q gi|255764511|r 229 AQGLRSAEKALKAGGLLIVVSFHS---LEDRLVKKFF 262 (341)
Q Consensus 229 ~~~L~~~~~~L~~gGrl~VISFHS---LEDRiVK~ff 262 (341)
+++|.+|.+++++||.|+-=| .| -|+--|-+++
T Consensus 351 r~LllsAi~lv~~GGvLVYST-CSI~~~ENE~vV~ya 386 (460)
T KOG1122 351 RELLLSAIDLVKAGGVLVYST-CSITVEENEAVVDYA 386 (460)
T ss_pred HHHHHHHHHHCCCCCEEEEEE-EECCHHHHHHHHHHH
T ss_conf 999999873115770899985-322601228999999
No 131
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=80.14 E-value=5.2 Score=20.72 Aligned_cols=77 Identities=14% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHCCEEEEECCCHHHHHHHHHHH-----------HHC-CCCEEEE-----------------------------CCC
Q ss_conf 99974890999809989999999985-----------214-8852771-----------------------------132
Q gi|255764511|r 53 SFCKMGSNVIALDRDPFAVSCGQETM-----------RDY-KEQFSLF-----------------------------QAT 91 (341)
Q Consensus 53 ~iL~~~~~liaiDrD~~ai~~a~~~l-----------~~~-~~r~~~~-----------------------------~~~ 91 (341)
-+++.+..++++|++++|++.+..-. ++. ..|..-. |++
T Consensus 18 rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~ 97 (300)
T COG1023 18 RLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSN 97 (300)
T ss_pred HHHHCCCEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 99838972899738889999998657754367999997469874799973377736899999885367888898788632
Q ss_pred HHHHHHH---HHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 7889876---5312332478622520788876540734456641
Q gi|255764511|r 92 FSQLQDY---VPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 (341)
Q Consensus 92 F~~i~~~---l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgp 132 (341)
|.+-..- +.+ .+--++|.|.|-- +...+|||||..-||
T Consensus 98 y~Ds~rr~~~l~~--kgi~flD~GTSGG-~~G~~~G~~lMiGG~ 138 (300)
T COG1023 98 YKDSLRRAKLLAE--KGIHFLDVGTSGG-VWGAERGYCLMIGGD 138 (300)
T ss_pred HHHHHHHHHHHHH--CCCEEEECCCCCC-CHHHHCCCEEEECCC
T ss_conf 5778999998876--5971783467777-225535723885386
No 132
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.97 E-value=5.3 Score=20.69 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=50.2
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEEC
Q ss_conf 7688288----99999748909998099899999999852148852771132788---987653----1-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+.+||+++.+....+.+...+.++.+++...++ +.+.+. . ..+|+++..-
T Consensus 11 TGgs~GIG~a~a~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDilvnnA 90 (246)
T PRK05653 11 TGASRGIGRAIALRLAADGARVVIYDSNEEAAEALAEELRAAGGEAALLVFDVTDEAAVRALIEAAVERFGGLDVLVNNA 90 (246)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 38975899999999998799999997999999999999996599489999728999999999999999749986999899
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|+.
T Consensus 91 g~~ 93 (246)
T PRK05653 91 GIT 93 (246)
T ss_pred CCC
T ss_conf 999
No 133
>KOG1663 consensus
Probab=79.96 E-value=5.3 Score=20.69 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=50.0
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH-HHHHHHHC---CCCEEEEECCCHHHHHHHHHHCCCCCC
Q ss_conf 4890999809989999999985214--8852771132788-98765312---332478622520788876540734456
Q gi|255764511|r 57 MGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ-LQDYVPDK---GVDGVVFDLGVSSMQIDCGDRGFSFQK 129 (341)
Q Consensus 57 ~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~-i~~~l~~~---~vdgIl~DLGvSS~Qld~~~RGFSf~~ 129 (341)
..|+|++||.|+++...+....+.- ..+++++++.-.+ ++++++.. .+|+++.|=-=..++ +.-+|=...-+
T Consensus 97 ~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~-~y~e~~l~Llr 174 (237)
T KOG1663 97 EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYS-NYYERLLRLLR 174 (237)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEEECCCHHHHH-HHHHHHHHHCC
T ss_conf 9965999961868888759999860633034234252566699998557998425999736667789-99999985621
No 134
>PRK00536 speE spermidine synthase; Provisional
Probab=79.42 E-value=4.9 Score=20.91 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=54.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 16078334009868866083888889983768828899999748909998099899999999852148852771132788
Q gi|255764511|r 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341)
Q Consensus 15 ~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341)
++|-.|.|.+. -|.|-.+.|= --|.||=.+.+|+...++.-.+.|+..+..+++-+..+.+ .+.+-++..
T Consensus 59 hEMl~Hvpl~~-------Hp~Pk~VLII-GGGDGG~~REvlKH~~~v~~VEID~~Vv~~sk~ylP~~~~--~~~dpr~~~ 128 (262)
T PRK00536 59 SELLAHMGGCT-------KKELKEVLIV-DGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHE--VKNNKNFTH 128 (262)
T ss_pred HHHHHCHHHHC-------CCCCCEEEEE-CCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCHHHHH--HHCCCCEEH
T ss_conf 88875302321-------8997879998-6875599999872897669999678999999997856565--413996113
Q ss_pred HHHHHH--HCCCCEEEEE
Q ss_conf 987653--1233247862
Q gi|255764511|r 95 LQDYVP--DKGVDGVVFD 110 (341)
Q Consensus 95 i~~~l~--~~~vdgIl~D 110 (341)
+..+.. ...+|-|+.|
T Consensus 129 ~~~~~~~~~~~fDvIIvD 146 (262)
T PRK00536 129 AKQLLDLDIKKYDLIICL 146 (262)
T ss_pred HHHHHHHCCCCCCEEEEC
T ss_conf 999876154766889988
No 135
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=79.35 E-value=2.6 Score=22.64 Aligned_cols=87 Identities=30% Similarity=0.478 Sum_probs=62.5
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHHHH-HHHHHC---CCCEEEECCCHHHHHHHHH
Q ss_conf 86886608388888998376882889999974890-999809989999999-985214---8852771132788987653
Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQ-ETMRDY---KEQFSLFQATFSQLQDYVP 100 (341)
Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~a~-~~l~~~---~~r~~~~~~~F~~i~~~l~ 100 (341)
+.|+..++|..|.+++|.-.|.|-|--.+++.|++ ++||| |..+-.++ +.+.++ ..|..+..-.-.+|....+
T Consensus 111 DR~l~~~~pL~~~~i~DVGC~~GY~~~~M~~~Gak~~VG~D--P~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~p 188 (316)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHLWRMLGEGAKLLVGID--PTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKP 188 (316)
T ss_pred HHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECC--HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCC
T ss_conf 54312466545777898336870688977620782787436--5789999999999872423557540367022232076
Q ss_pred HCCCCEEEEECCCHHH
Q ss_conf 1233247862252078
Q gi|255764511|r 101 DKGVDGVVFDLGVSSM 116 (341)
Q Consensus 101 ~~~vdgIl~DLGvSS~ 116 (341)
+-||-| |=+||=.|
T Consensus 189 -nAFD~v-Fs~GVLYH 202 (316)
T TIGR00452 189 -NAFDTV-FSLGVLYH 202 (316)
T ss_pred -CCCEEE-EECCHHHC
T ss_conf -412031-22020211
No 136
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.22 E-value=5.6 Score=20.54 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=50.6
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEEC
Q ss_conf 7688288----99999748909998099899999999852148852771132788---987653----1-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+..|++++.+..+.+.++..+.+..++..+.++ +.+... . .++|+++.+=
T Consensus 11 TGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnNA 90 (253)
T PRK08217 11 TGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAQCAALGGEAEVYAANVTDEEDVEATFAQIAEDFGQLNGLINNA 90 (253)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 48877899999999998799899997999999999999996599489998247999999999999999839985999857
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|+.
T Consensus 91 Gi~ 93 (253)
T PRK08217 91 GIL 93 (253)
T ss_pred CCC
T ss_conf 436
No 137
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=78.94 E-value=5.7 Score=20.48 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=25.7
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEE--CCCHHHHHHHHHHHH
Q ss_conf 99999988520244533899872--550238999999864
Q gi|255764511|r 228 LAQGLRSAEKALKAGGLLIVVSF--HSLEDRLVKKFFASR 265 (341)
Q Consensus 228 L~~~L~~~~~~L~~gGrl~VISF--HSLEDRiVK~ff~~~ 265 (341)
-...+..|.+.|++||.|-|+-. =+.| .+.++.|.+.
T Consensus 245 ~~~ii~~A~~~L~~gGeL~iVan~~l~y~-~~L~~~Fg~v 283 (300)
T COG2813 245 AQEIIAAAARHLKPGGELWIVANRHLPYE-KKLKELFGNV 283 (300)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCHH-HHHHHHCCCE
T ss_conf 99999999976045977999975888968-9999862877
No 138
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.79 E-value=5.7 Score=20.46 Aligned_cols=44 Identities=11% Similarity=-0.013 Sum_probs=23.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHH-HCCCCCCEEEEEEECCCHHHHHH
Q ss_conf 876651340578999999885-20244533899872550238999
Q gi|255764511|r 216 ALRIFVNNEIEELAQGLRSAE-KALKAGGLLIVVSFHSLEDRLVK 259 (341)
Q Consensus 216 ALRI~VN~El~~L~~~L~~~~-~~L~~gGrl~VISFHSLEDRiVK 259 (341)
..||.-...++.|-..+-... +.+...++.+++|--.++++...
T Consensus 310 GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~~~~~~ 354 (381)
T COG0116 310 GERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTSEDLLFCLGL 354 (381)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf 011177046999999999999987257736999766778899876
No 139
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=76.89 E-value=6.5 Score=20.11 Aligned_cols=84 Identities=14% Similarity=0.165 Sum_probs=62.0
Q ss_pred HCCC--CCCEEEECCCCCCHHHHHHH---HHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHC--C
Q ss_conf 0838--88889983768828899999---748909998099899999999852148-85277113278898765312--3
Q gi|255764511|r 32 LNPA--PGKVILDATFGAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDK--G 103 (341)
Q Consensus 32 l~~~--~~g~~iD~TlG~GGHS~~iL---~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~--~ 103 (341)
|+|+ ++..++|.----||=|..|- +..|.++|-|....=++.-..++..-+ -+..+.|..-..+..+.... =
T Consensus 71 L~p~Gn~~~~vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~~~DgR~f~~~~~~~eif 150 (284)
T TIGR00446 71 LEPEGNEKERVLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVLNVAVINVDGRKFGAVVLKMEIF 150 (284)
T ss_pred ECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEEEECCCCHHHHHHCCCEEE
T ss_conf 17787688879997408896489999986588518997376341066786555621003332413763001231443034
Q ss_pred CCEEEEECCCHH
Q ss_conf 324786225207
Q gi|255764511|r 104 VDGVVFDLGVSS 115 (341)
Q Consensus 104 vdgIl~DLGvSS 115 (341)
+|.||+|==.|-
T Consensus 151 FD~iLLDAPCSG 162 (284)
T TIGR00446 151 FDRILLDAPCSG 162 (284)
T ss_pred EEEEEECCCCCC
T ss_conf 321452578798
No 140
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=76.69 E-value=6.6 Score=20.07 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=39.8
Q ss_pred HHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 86886608-388888998376882889999974---8909998099899999999852148852771132788
Q gi|255764511|r 26 EKVIALLN-PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341)
Q Consensus 26 ~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341)
.|+.+-.. ..++..+||-----||+|+...+. .++|+|+|.+|- +...+ +.++++.|.+
T Consensus 34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~---------~~~~~-V~~iq~d~~~ 96 (205)
T COG0293 34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPIPG-VIFLQGDITD 96 (205)
T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCC---------CCCCC-CEEEEEECCC
T ss_conf 999874373058987998387998499999997388884899977545---------56789-4688413248
No 141
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=76.30 E-value=6.7 Score=20.00 Aligned_cols=53 Identities=13% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCE--EEEECCCHHHHHHHHHHHHHCCCCEEEECCCH
Q ss_conf 388888998376882889999974890--99980998999999998521488527711327
Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGSN--VIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 (341)
Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~~--liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F 92 (341)
......+||.--|.|..+.+|++++++ .+.+|. |..+..+.. .+|+.+..++|
T Consensus 99 ~~~~~~vvDvGGG~G~~~~~i~~~~P~l~~~v~Dl-p~v~~~a~~-----~~rv~~~~gdf 153 (239)
T pfam00891 99 FSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDL-PHVIADAPS-----ADRVEFVGGDF 153 (239)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEC-HHHHHHCCC-----CCCEEEECCCC
T ss_conf 66787689967981899999999889983898646-877862764-----68548844877
No 142
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=76.16 E-value=3.1 Score=22.21 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=6.1
Q ss_pred EEEEC--CCHHHHHHHHH
Q ss_conf 99980--99899999999
Q gi|255764511|r 61 VIALD--RDPFAVSCGQE 76 (341)
Q Consensus 61 liaiD--rD~~ai~~a~~ 76 (341)
|+.+| .|++-++.-++
T Consensus 7 ~fVVDtc~~eeeL~~LK~ 24 (267)
T cd01478 7 LFVVDTCMDEEELDALKE 24 (267)
T ss_pred EEEEECCCCHHHHHHHHH
T ss_conf 999987779999999999
No 143
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=76.00 E-value=2.3 Score=23.04 Aligned_cols=94 Identities=23% Similarity=0.301 Sum_probs=68.7
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEE-CCCHHHHHHHHHHHHHCCC-C--EEEECCCHHHH
Q ss_conf 334009868866083888889983768828899999748909998-0998999999998521488-5--27711327889
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIAL-DRDPFAVSCGQETMRDYKE-Q--FSLFQATFSQL 95 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liai-DrD~~ai~~a~~~l~~~~~-r--~~~~~~~F~~i 95 (341)
-.|-+..-.+..-...+++.++|--.|.||-...---.+.+++|. |.+.....-+...++.|.. . +.....+-..+
T Consensus 187 ~~p~~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 266 (358)
T TIGR01177 187 LDPKLARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDL 266 (358)
T ss_pred CCHHHHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHC
T ss_conf 55467777765420246751004222666033233332110002440356764252111333055431567640330011
Q ss_pred HHHHHH--CCCCEEEEECCC
Q ss_conf 876531--233247862252
Q gi|255764511|r 96 QDYVPD--KGVDGVVFDLGV 113 (341)
Q Consensus 96 ~~~l~~--~~vdgIl~DLGv 113 (341)
....+. ..+|++..|--+
T Consensus 267 ~~~~~~~~~~~~~~~~d~p~ 286 (358)
T TIGR01177 267 PLRLPGLDESVDAIATDPPY 286 (358)
T ss_pred CCCCCCCHHHHHHHHCCCCC
T ss_conf 10035310112222125654
No 144
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase; InterPro: IPR004620 The enzyme activities methylenetetrahydrofolate reductase (1.5.1.20 from EC) and 5,10-methylenetetrahydrofolate reductase (FADH) (1.7.99.5 from EC) differ in that the former (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while the latter (assigned in many bacteria) is flexible with respect to the acceptor. Both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as one or the other, this family describes the subset of proteins found in bacteria, and currently designated 5,10-methylenetetrahydrofolate reductase. This protein is an FAD-containing flavoprotein.; GO: 0009086 methionine biosynthetic process.
Probab=75.54 E-value=6.9 Score=19.94 Aligned_cols=102 Identities=16% Similarity=0.237 Sum_probs=55.8
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHH
Q ss_conf 09868866083888889983768828899999748909998099899999999852148----85277113278898765
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK----EQFSLFQATFSQLQDYV 99 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~----~r~~~~~~~F~~i~~~l 99 (341)
.|-++++-|..... .||.+|+|+||-++.=|-.|--=--+=+-+--+..++...++++ ..++.+..+=+++.++|
T Consensus 16 ~L~~t~~~L~~l~P-~FvSVTyGAgGs~~~~~~~G~l~~~~R~r~~T~~~~~~I~~~~~~~~v~HLtC~~~t~~e~~~~L 94 (302)
T TIGR00676 16 NLWETVDRLEQLDP-DFVSVTYGAGGSTRDRLGDGLLKRRIRIRPGTVRIVRRIKKETGIPTVPHLTCIGSTREEIEEIL 94 (302)
T ss_pred HHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999742699-85888654888524658897546664267778999999987328863000002368989999999
Q ss_pred HH---CCCCEEEE---ECCCHHHHHHHHHHCCCC
Q ss_conf 31---23324786---225207888765407344
Q gi|255764511|r 100 PD---KGVDGVVF---DLGVSSMQIDCGDRGFSF 127 (341)
Q Consensus 100 ~~---~~vdgIl~---DLGvSS~Qld~~~RGFSf 127 (341)
.+ .||.-||+ |.. +-+++....-||.|
T Consensus 95 ~~y~~~Gi~~ilALRGD~p-~~~~~~~~~~~~~y 127 (302)
T TIGR00676 95 REYRELGIRNILALRGDPP-DETDFEPAPGGFKY 127 (302)
T ss_pred HHHHHCCCCEEEEECCCCC-CCCCCCCCCCCCCC
T ss_conf 9998748867987437688-88865658876677
No 145
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=75.50 E-value=7 Score=19.87 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=50.7
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH---H----HH-CCCCEEEEEC
Q ss_conf 7688288----999997489099980998999999998521488527711327889876---5----31-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---V----PD-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~---l----~~-~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+..|++++..+...+.+++.+.+...+..+.++-+++ + .. .++|.++-+-
T Consensus 9 TG~s~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~d~~~v~~~v~~~~~~~G~iDilvnnA 88 (250)
T TIGR03206 9 TGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNA 88 (250)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 68576899999999998799999997988999999999995399289999448999999999999999759997999898
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|+.
T Consensus 89 g~~ 91 (250)
T TIGR03206 89 GWD 91 (250)
T ss_pred CCC
T ss_conf 889
No 146
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=74.23 E-value=7.6 Score=19.67 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 899999988520244533899872550
Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHSL 253 (341)
Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHSL 253 (341)
.-.+.+..++++|+|||.|+.-|-++.
T Consensus 216 ~Y~~l~~~a~~ll~~gG~L~~~s~s~~ 242 (286)
T pfam10672 216 DYKKILRRLPELLVEGGTVLACVNSPA 242 (286)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 899999999986089968999818865
No 147
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=74.00 E-value=5.2 Score=20.73 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=38.4
Q ss_pred CCCCHH-HHHH----HHHCCCCCCEEEECCCCCCHHH--HHHHHH--CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 334009-8688----6608388888998376882889--999974--89099980998999999998521
Q gi|255764511|r 20 HVPVLL-EKVI----ALLNPAPGKVILDATFGAGGYS--RSFCKM--GSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 20 H~PVll-~Evl----~~l~~~~~g~~iD~TlG~GGHS--~~iL~~--~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
-.||-| .|+. ..+.-...-..-||-.|+|+-- ..+|.. ..+|+|-|.|++++..|.++|.-
T Consensus 30 ~FPVRLAsEifqRal~~~~g~~p~tlwDpCCG~gYlLTvlgLLhr~~i~~v~aSDVd~~al~LA~~NL~L 99 (249)
T pfam11599 30 AFPVRLALEIFERALARLIGDAEISLWDCCCGGAYLLSILGLLHRNSIANLIASDIDPAPIELAADNLAL 99 (249)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 8418999999999998626888730330577711899999985315787777425887899999864544
No 148
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=73.98 E-value=6.8 Score=19.99 Aligned_cols=83 Identities=24% Similarity=0.379 Sum_probs=43.6
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHH--HHHHHHHCCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf 886608388888998376882889999974890-9998099899999--9998521488527711327889876531233
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSC--GQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~--a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~v 104 (341)
+...+.+..|..++|--.|.|-|.--+|..+++ |+|||--+--... |-+.+-.-..++.+.--...++..+ ..|
T Consensus 107 l~~~i~~L~gk~VlDVGcgNGYy~~RMlg~ga~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~lPlg~E~lp~~---~~F 183 (315)
T pfam08003 107 VLPHLSPLKGRTILDVGCGNGYHMWRMLGEGAALVVGIDPSELFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL---EAF 183 (315)
T ss_pred HHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCC---CCC
T ss_conf 87342242689887517786499998622399879988981999999999999708987568853676548663---421
Q ss_pred CEEEEECCCH
Q ss_conf 2478622520
Q gi|255764511|r 105 DGVVFDLGVS 114 (341)
Q Consensus 105 dgIl~DLGvS 114 (341)
|-| |-+||=
T Consensus 184 DtV-FsMGVL 192 (315)
T pfam08003 184 DTV-FSMGVL 192 (315)
T ss_pred CEE-EEEEEE
T ss_conf 557-765444
No 149
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=73.52 E-value=4.4 Score=21.16 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 68828899999748909998099899999999852148852771132788987653123324786
Q gi|255764511|r 45 FGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341)
Q Consensus 45 lG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341)
.+.|--|..+-..-.+|.++|..+.|+..|++|+..++ .+.+.+...- +..+...||-|++
T Consensus 52 Ca~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla~~~-hV~v~~~~vp---~~wP~~~FDLIV~ 112 (201)
T pfam05401 52 CAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMKKWS-HISWIVSDVQ---QFSTNELFDLIVV 112 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCEEEECCCC---CCCCCCCEEEEEE
T ss_conf 66248789999987467321362999999999855799-8289825666---6599888627975
No 150
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=73.43 E-value=7.9 Score=19.54 Aligned_cols=179 Identities=16% Similarity=0.294 Sum_probs=99.3
Q ss_pred CCCCCHHHCCCCCCCCCCHHHHHHHHHCCC----CCCEEEECCCCCCHHHHHHHHHC-----------CEEEEECCCHHH
Q ss_conf 643201101160783340098688660838----88889983768828899999748-----------909998099899
Q gi|255764511|r 6 CKTMSSAIHHTIGDHVPVLLEKVIALLNPA----PGKVILDATFGAGGYSRSFCKMG-----------SNVIALDRDPFA 70 (341)
Q Consensus 6 ~~~m~~~~~~~~~~H~PVll~Evl~~l~~~----~~g~~iD~TlG~GGHS~~iL~~~-----------~~liaiDrD~~a 70 (341)
-|.||..|+- +-|. +=-+++++.+.+. ++..++|---|.|==+..+.+.. .+|+|+|-=+++
T Consensus 12 YD~~N~~lSf--G~h~-~Wr~~~~~~~~~~~E~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~M 88 (242)
T TIGR01934 12 YDLLNDLLSF--GLHR-LWRRRAVKLIGVQLEGKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEM 88 (242)
T ss_pred HHHHHHHHHH--HHHH-HHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHH
T ss_conf 5267557767--4328-999999998786236888897788723839999999863575553357763378987079889
Q ss_pred HHHHHHHHHHC-----CCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC-----CCCCCCEECCCCCC
Q ss_conf 99999985214-----885277113278898765312332478622520788876540734-----45664101043556
Q gi|255764511|r 71 VSCGQETMRDY-----KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPLDMRMSCS 140 (341)
Q Consensus 71 i~~a~~~l~~~-----~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgpLDMRmd~~ 140 (341)
++.++++...- ..++.+++++-.+|. .++..||.+-.=.|+=..+ |.+.+.. .+..|+|= =++.+
T Consensus 89 L~~a~kk~~~~~r~~~~~~~~f~~~dA~~LP--F~D~sFD~~TiaFGlRN~~--d~~~aL~E~~RVLKpgG~l~-iLEf~ 163 (242)
T TIGR01934 89 LEVAKKKAPNEERKALSANVSFIEADAEALP--FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLV-ILEFS 163 (242)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHEECHHHCCC--CCCCCEEEEEEECCCCCCC--CHHHHHHHHHHCCCCCCEEE-EECCC
T ss_conf 9999874134200333216421100055087--9986244466402554746--86789877311018898799-84078
Q ss_pred ---C-CCHHHHHHHCCHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf ---8-418999862225789989997446302688-999999997521243213799999988
Q gi|255764511|r 141 ---G-ISASDVVNQANVKDLTRILGILGEEKQASR-IAHAIVKRRQSAPFQTTQDLSSLIQKT 198 (341)
Q Consensus 141 ---~-~tA~eiln~~s~~~L~~i~~~yGee~~a~~-IA~~Iv~~R~~~~i~TT~eL~~iI~~~ 198 (341)
. .-.+.+=+-|+..=|-.|=.-+..-+.|+. +...| ..+.+-.+|+.+++.+
T Consensus 164 ~P~~~~~~~~~Y~~Y~~~v~P~~G~~~s~~~~aY~YL~eSi------~~FP~~~~l~~~~~~a 220 (242)
T TIGR01934 164 KPANGAFLKKFYKFYLKNVLPSIGGLISKNKEAYEYLPESI------RAFPSQEELAAMLKEA 220 (242)
T ss_pred CCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHH------HHCCCHHHHHHHHHHC
T ss_conf 67641688999998850003777777407886657788998------7538988999999973
No 151
>PRK07677 short chain dehydrogenase; Provisional
Probab=72.76 E-value=8.2 Score=19.44 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=51.9
Q ss_pred CCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEEEC
Q ss_conf 76882889----999974890999809989999999985214885277113278898---7653----1-2332478622
Q gi|255764511|r 44 TFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~DL 111 (341)
|-|.+|=- +.+++.+.+|+..||+.+.+..+.+.++.++.++.++..+.++-+ ++.. . ..+|.++-+-
T Consensus 9 TGgs~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVnNA 88 (254)
T PRK07677 9 TGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPDDVQKMIEQIDEKFGRIDALINNA 88 (254)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 58767899999999998799999996999999999999985699099998038999999999999999839988899757
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|.+
T Consensus 89 g~~ 91 (254)
T PRK07677 89 AGN 91 (254)
T ss_pred CCC
T ss_conf 557
No 152
>PRK09072 short chain dehydrogenase; Provisional
Probab=72.46 E-value=8.3 Score=19.40 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=71.9
Q ss_pred CCCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHH
Q ss_conf 37688288999----99748909998099899999999852148852771132788987653123324786225207888
Q gi|255764511|r 43 ATFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 (341)
Q Consensus 43 ~TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Ql 118 (341)
-|-|.+|=-++ +.+.+.+|+..+|+++.+....+.+. +.++..+. +|+.-.. ++
T Consensus 10 ITGassGIG~a~A~~la~~G~~vil~~R~~~~L~~~~~~l~--~~~~~~~~-------------------~Dls~~~-~~ 67 (262)
T PRK09072 10 LTGASGGIGEALAEALCAAGARLLLVGRNAEKLEALAARPY--PGRVRWVV-------------------ADLTSEA-GR 67 (262)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC--CCCEEEEE-------------------EECCCHH-HH
T ss_conf 94862399999999999879989999898999999999845--89769999-------------------7179999-99
Q ss_pred HHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 765407344566410104355684189998622257899899974--463026889999999975212432137999999
Q gi|255764511|r 119 DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL--GEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQ 196 (341)
Q Consensus 119 d~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~y--Gee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~ 196 (341)
+.-.. . -...|++|.=.|..|+....-+...+.+++.++|... |-..-.+...... ..+..+.|..+.-++..+.
T Consensus 68 ~~~~~-~-~~~~g~iDiLInNAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~lt~~~lp~m-~~~~~G~IvnisS~ag~~~ 144 (262)
T PRK09072 68 EAVLA-R-AREMGGINVLINNAGVNHFALLDQQDPEAIDRLLALNLTAPMQLTRALLPLL-RAQPSAAVVNVGSTFGSIG 144 (262)
T ss_pred HHHHH-H-HHHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEEEECCHHHHCC
T ss_conf 99999-9-9984999899989977889863549999999999995689999999999999-8769948999668666257
Q ss_pred HHHHH-HHCCC-CHHHHHHHHHHHHHH
Q ss_conf 88764-31277-125788888876651
Q gi|255764511|r 197 KTVYF-SKNNR-IHPATRSFQALRIFV 221 (341)
Q Consensus 197 ~~~~~-~~~~k-~hpatr~FQALRI~V 221 (341)
.|. .-+.. ++-..--.++||.|+
T Consensus 145 --~p~~~~Y~ASKaal~~~s~sL~~El 169 (262)
T PRK09072 145 --YPGYASYCASKFALRGFSEALRREL 169 (262)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf --8998179999999999999999984
No 153
>PRK06181 short chain dehydrogenase; Provisional
Probab=71.38 E-value=8.8 Score=19.24 Aligned_cols=71 Identities=14% Similarity=0.272 Sum_probs=48.4
Q ss_pred CCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEEEC
Q ss_conf 76882889----999974890999809989999999985214885277113278898---7653----1-2332478622
Q gi|255764511|r 44 TFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~DL 111 (341)
|-|..|== +.+.+.+.+|+..||+++.++...+.+.+++.+...+..+.++-+ +... . .++|.++-+=
T Consensus 7 TGassGIG~a~A~~la~~Ga~vvl~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~G~iDiLVNNA 86 (263)
T PRK06181 7 TGASEGIGRALAVRLARAGARLVLAARNEERLASLAQELANYGAEALVVATDVSDAEACERLIEAAVAHFGGIDILVNNA 86 (263)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 58101999999999998799899998899999999999995499679998079999999999999999829964899878
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|++
T Consensus 87 Gi~ 89 (263)
T PRK06181 87 GMT 89 (263)
T ss_pred CCC
T ss_conf 567
No 154
>KOG1209 consensus
Probab=71.33 E-value=8.5 Score=19.34 Aligned_cols=148 Identities=19% Similarity=0.296 Sum_probs=81.4
Q ss_pred EEEECCCCCCHHHHH--HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHH
Q ss_conf 899837688288999--997489099980998999999998521488527711327889876531233247862252078
Q gi|255764511|r 39 VILDATFGAGGYSRS--FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSM 116 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~--iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~ 116 (341)
.+.-|.=|+=||..+ +-+.+.+|+|--|.-+-...-. .+++ +.. +-|-||+.
T Consensus 11 lItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~---~~~g--l~~---------------------~kLDV~~~ 64 (289)
T KOG1209 11 LITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA---IQFG--LKP---------------------YKLDVSKP 64 (289)
T ss_pred EEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHH---HHHC--CEE---------------------EEECCCCH
T ss_conf 996057765349999999867819999702246076678---8609--705---------------------87056872
Q ss_pred HH----HHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 88----7654073445664101043556841899986222578998999--74463026889999999975212432137
Q gi|255764511|r 117 QI----DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILG--ILGEEKQASRIAHAIVKRRQSAPFQTTQD 190 (341)
Q Consensus 117 Ql----d~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~--~yGee~~a~~IA~~Iv~~R~~~~i~TT~e 190 (341)
|= ...-|-| .+|.||.-.|..|.+-.-=+-..+.+..++.|. .||-.+--+-+...++ |.++.|..+..
T Consensus 65 ~~V~~v~~evr~~---~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~li--kaKGtIVnvgS 139 (289)
T KOG1209 65 EEVVTVSGEVRAN---PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLI--KAKGTIVNVGS 139 (289)
T ss_pred HHHHHHHHHHHHC---CCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHH--HCCCEEEEECC
T ss_conf 7789988888618---998268887179987655234687899986402112343438899999998--72664997445
Q ss_pred HHHHHHH---HHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999998---87643127712578888887665
Q gi|255764511|r 191 LSSLIQK---TVYFSKNNRIHPATRSFQALRIF 220 (341)
Q Consensus 191 L~~iI~~---~~~~~~~~k~hpatr~FQALRI~ 220 (341)
|+..+-- +++..-+..+|-.++| ||++
T Consensus 140 l~~~vpfpf~~iYsAsKAAihay~~t---LrlE 169 (289)
T KOG1209 140 LAGVVPFPFGSIYSASKAAIHAYART---LRLE 169 (289)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH---CEEE
T ss_conf 35880243156666779999986320---0776
No 155
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=71.06 E-value=9 Score=19.19 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=30.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHH
Q ss_conf 90999809989999999985214--8852771132788987
Q gi|255764511|r 59 SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQD 97 (341)
Q Consensus 59 ~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~ 97 (341)
++++|.|.|+.||..|++..+.- .+.+.|.+..|.++..
T Consensus 261 ~~i~G~D~D~~ai~~Ar~Na~~AGv~~~I~f~~~d~~~l~~ 301 (716)
T PRK11783 261 PKFYGSDIDPRVIQAARRNARRAGVEELITFEVKDVADLKN 301 (716)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCC
T ss_conf 71899959989999999999981998862999567898579
No 156
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=71.05 E-value=9 Score=19.19 Aligned_cols=124 Identities=20% Similarity=0.221 Sum_probs=66.4
Q ss_pred HHHCCCCCCCCC--------EECCCCCC----CCCHHHHHHHCCHHHHHHHHHHHCCCCH--HHHHH-HHHHHHHHHCCC
Q ss_conf 540734456641--------01043556----8418999862225789989997446302--68899-999999752124
Q gi|255764511|r 121 GDRGFSFQKSGP--------LDMRMSCS----GISASDVVNQANVKDLTRILGILGEEKQ--ASRIA-HAIVKRRQSAPF 185 (341)
Q Consensus 121 ~~RGFSf~~dgp--------LDMRmd~~----~~tA~eiln~~s~~~L~~i~~~yGee~~--a~~IA-~~Iv~~R~~~~i 185 (341)
.++|..|..+.. ||||.+.. ...-..+||-++..--..|.---|.-+. +--++ +++--++++-.+
T Consensus 183 ~E~g~kf~v~~~~g~kTGfFlDqR~~R~~l~~~~~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~L 262 (393)
T COG1092 183 EENGVKFLVDLVDGLKTGFFLDQRDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAEL 262 (393)
T ss_pred EECCEEEEEECCCCCCCEEEHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 80780699865874200452876799999861316876788646676999999866997148982657899999999986
Q ss_pred CC---------HHHHHHHHHHHHHHH-HCCC--CHHH------HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 32---------137999999887643-1277--1257------8888887665134057899999988520244533899
Q gi|255764511|r 186 QT---------TQDLSSLIQKTVYFS-KNNR--IHPA------TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIV 247 (341)
Q Consensus 186 ~T---------T~eL~~iI~~~~~~~-~~~k--~hpa------tr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~V 247 (341)
.. -.|.-+.++...+.+ +..- ..|- ..+|+|.|-+ ..++..+.++|+|||.+++
T Consensus 263 Ng~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy--------~~l~~~~~~lL~pgG~l~~ 334 (393)
T COG1092 263 NGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDY--------KDLNDLALRLLAPGGTLVT 334 (393)
T ss_pred CCCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHH--------HHHHHHHHHHCCCCCEEEE
T ss_conf 29971010567223999999998559955689978810035821005389899--------9999999997079968999
Q ss_pred EEECC
Q ss_conf 87255
Q gi|255764511|r 248 VSFHS 252 (341)
Q Consensus 248 ISFHS 252 (341)
.|=++
T Consensus 335 ~s~~~ 339 (393)
T COG1092 335 SSCSR 339 (393)
T ss_pred EECCC
T ss_conf 93677
No 157
>KOG1270 consensus
Probab=70.92 E-value=9 Score=19.18 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHCC-CCC------CEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHH
Q ss_conf 16078334009868866083-888------88998376882889999974890999809989999999985
Q gi|255764511|r 15 HTIGDHVPVLLEKVIALLNP-APG------KVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 (341)
Q Consensus 15 ~~~~~H~PVll~Evl~~l~~-~~~------g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l 78 (341)
.+...-.|-+.+-++...+. .|+ ..++|.-.|+|==|+.+-..+..|.|+|.-+++++.|++..
T Consensus 61 ~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~ 131 (282)
T KOG1270 61 SMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHK 131 (282)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHH
T ss_conf 44643326778878740432288754557864787236755023235750885685265599999998751
No 158
>PRK05855 short chain dehydrogenase; Validated
Probab=70.49 E-value=6.6 Score=20.07 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=73.8
Q ss_pred CEEEECCCCCCHHHHHH----HHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH---HHHHHHHHH-----CCCC
Q ss_conf 88998376882889999----97489099980998999999998521488527711327---889876531-----2332
Q gi|255764511|r 38 KVILDATFGAGGYSRSF----CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF---SQLQDYVPD-----KGVD 105 (341)
Q Consensus 38 g~~iD~TlG~GGHS~~i----L~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F---~~i~~~l~~-----~~vd 105 (341)
|-.+=-|-++.|==+++ -+.+.+|+..|+|+++++.+.+.++..+.....+..+- +.+..+... ..+|
T Consensus 315 GKvAvVTGA~sGIGrA~A~~fA~~GA~Vvl~Dr~~~~l~eta~ei~~~G~~a~~~~~DVtd~~av~al~~~v~~~~G~iD 394 (582)
T PRK05855 315 GKLVVVTGAGSGIGRATALAFAREGAEVVASDIDEAAAERTAALIRAAGAVAHAYRVDVSDADAMEALAEWVGAEHGVPD 394 (582)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 95899958757899999999997799999960799999999999995198489997558999999999999999769999
Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHH--CCCCHHHHHHHHHHHHHH-H
Q ss_conf 4786225207888765407344566410104355684189998622257899899974--463026889999999975-2
Q gi|255764511|r 106 GVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGIL--GEEKQASRIAHAIVKRRQ-S 182 (341)
Q Consensus 106 gIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~y--Gee~~a~~IA~~Iv~~R~-~ 182 (341)
-++-+=|+ ....-+...+.++..+++-.. |-..-.+-.+...++ |. .
T Consensus 395 ILVNNAGI-----------------------------~~~g~~~d~s~e~w~~v~dVNl~Gv~~~~ra~lp~M~~-rg~g 444 (582)
T PRK05855 395 IVVNNAGI-----------------------------GMAGGFLDTSAEEWDRVLDVNLWGVIHGCRLFGRQMVE-RGTG 444 (582)
T ss_pred EEEECCCC-----------------------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCC
T ss_conf 99989875-----------------------------89978032999999999988649999999999999996-4998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHH
Q ss_conf 12432137999999887643127712578-8888876651
Q gi|255764511|r 183 APFQTTQDLSSLIQKTVYFSKNNRIHPAT-RSFQALRIFV 221 (341)
Q Consensus 183 ~~i~TT~eL~~iI~~~~~~~~~~k~hpat-r~FQALRI~V 221 (341)
+.|..+.-++..+-... ..-+.-.+.|. --.++||.|.
T Consensus 445 G~IVNiSSiag~~~~p~-~~aY~ASKaAV~gftesLr~EL 483 (582)
T PRK05855 445 GHIVNVASAAAYAPSRS-LPAYATSKAAVLMLSECLRAEL 483 (582)
T ss_pred CEEEEECCHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 08999678645778988-6468999999999999999985
No 159
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=70.12 E-value=7 Score=19.87 Aligned_cols=87 Identities=22% Similarity=0.358 Sum_probs=57.3
Q ss_pred HHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEE-CCCHH-HH--HHH
Q ss_conf 98688660838-888899837688288999997489-09998099899999999852148852771-13278-89--876
Q gi|255764511|r 25 LEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLF-QATFS-QL--QDY 98 (341)
Q Consensus 25 l~Evl~~l~~~-~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~-~~~F~-~i--~~~ 98 (341)
|.|+++-+.+. .|.+.||.=-=.||-|...|++|. +|||+|-=-.-++ ..|++ .+|+..+ ..||. .+ .++
T Consensus 65 L~~~L~~F~~~vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~---~kLR~-D~Rv~~~eR~N~rGy~T~~d~ 140 (240)
T TIGR00478 65 LKEALEEFEVDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLA---EKLRQ-DERVKVLERTNIRGYVTPADI 140 (240)
T ss_pred HHHHCCCCCEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHH---HHCCC-CCEEEEEECCCCCCCCCHHHH
T ss_conf 99853543313378689970567304899998705846777860321334---32363-662689645787444665654
Q ss_pred HHH-CCCCEEEEECCCHH
Q ss_conf 531-23324786225207
Q gi|255764511|r 99 VPD-KGVDGVVFDLGVSS 115 (341)
Q Consensus 99 l~~-~~vdgIl~DLGvSS 115 (341)
... .-.+..++|+=.=|
T Consensus 141 ~~~qP~P~lA~~DvSFiS 158 (240)
T TIGR00478 141 VKDQPMPDLAVVDVSFIS 158 (240)
T ss_pred HCCCCCCCHHHHHHHHHH
T ss_conf 078889731444457887
No 160
>PRK05867 short chain dehydrogenase; Provisional
Probab=69.65 E-value=9.6 Score=19.00 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=49.4
Q ss_pred CCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC
Q ss_conf 76882889----9999748909998099899999999852148852771132788---9876531-----2332478622
Q gi|255764511|r 44 TFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341)
|=|.+|== +.+.+.+.+|+..|||++.++...+.+...+.+...+...-++ +...+.. .++|.++-+-
T Consensus 15 TGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ei~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVnNA 94 (253)
T PRK05867 15 TGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNA 94 (253)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 79565999999999998699999997988999999999984599199998369999999999999999959985999899
Q ss_pred CCHH
Q ss_conf 5207
Q gi|255764511|r 112 GVSS 115 (341)
Q Consensus 112 GvSS 115 (341)
|+..
T Consensus 95 G~~~ 98 (253)
T PRK05867 95 GIIT 98 (253)
T ss_pred CCCC
T ss_conf 7788
No 161
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=68.58 E-value=10 Score=18.86 Aligned_cols=88 Identities=24% Similarity=0.312 Sum_probs=59.4
Q ss_pred HHHHHHHHCCC-CCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEE-EECCCHHHHHHHHHH
Q ss_conf 98688660838-888899837688288999997489-099980998999999998521488527-711327889876531
Q gi|255764511|r 25 LEKVIALLNPA-PGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFS-LFQATFSQLQDYVPD 101 (341)
Q Consensus 25 l~Evl~~l~~~-~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~-~~~~~F~~i~~~l~~ 101 (341)
|...++.+... +|.+.+|.---.||-|...|+.+. +|||+|---.-+.. .|+. ..|+. +-..|+.++..---.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~-d~rV~~~E~tN~r~l~~~~~~ 142 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRN-DPRVIVLERTNVRYLTPEDFT 142 (245)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCCCH---HHHC-CCCEEEEECCCHHHCCHHHCC
T ss_conf 999999648688997899826787629999987587479999703774378---6735-984799852783118987817
Q ss_pred CCCCEEEEECCCHHH
Q ss_conf 233247862252078
Q gi|255764511|r 102 KGVDGVVFDLGVSSM 116 (341)
Q Consensus 102 ~~vdgIl~DLGvSS~ 116 (341)
..+|.+..|+-.=|.
T Consensus 143 ~~~d~~v~DvSFISL 157 (245)
T COG1189 143 EKPDLIVIDVSFISL 157 (245)
T ss_pred CCCCEEEEEEEHHHH
T ss_conf 677847996423319
No 162
>KOG3339 consensus
Probab=68.45 E-value=7.1 Score=19.83 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHH--------CCE-EEEECCCHHHHHHHHH
Q ss_conf 376882889999974--------890-9998099899999999
Q gi|255764511|r 43 ATFGAGGYSRSFCKM--------GSN-VIALDRDPFAVSCGQE 76 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~--------~~~-liaiDrD~~ai~~a~~ 76 (341)
--+|.||||.++|+. .++ .++=|-|.-+...+..
T Consensus 43 VvlGSGGHT~EMlrLl~~l~~~y~~r~yI~a~tD~mS~~k~~~ 85 (211)
T KOG3339 43 VVLGSGGHTGEMLRLLEALQDLYSPRSYIAADTDEMSEQKARS 85 (211)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH
T ss_conf 9986897689999999988753185379996583542899873
No 163
>PRK01581 speE spermidine synthase; Validated
Probab=68.09 E-value=10 Score=18.79 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHH--HHH-----C-CCCEEEECCCH-HHHHHHHHHC
Q ss_conf 38888899837688288999997489--099980998999999998--521-----4-88527711327-8898765312
Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQET--MRD-----Y-KEQFSLFQATF-SQLQDYVPDK 102 (341)
Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~--l~~-----~-~~r~~~~~~~F-~~i~~~l~~~ 102 (341)
+.+..+.|=| -|.|.-.+.+|+..+ +|.-+|.||+++..++.. +.. + ..|+++++..- .-+.+ ...
T Consensus 138 ~~~~rVLILG-GGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~--~~~ 214 (363)
T PRK01581 138 IDPKRVLILG-GGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSS--PSS 214 (363)
T ss_pred CCCCEEEEEE-CCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHC--CCC
T ss_conf 8877389980-7643999998717985627899569999998751979987512001498049992108999861--675
Q ss_pred CCCEEEEECC
Q ss_conf 3324786225
Q gi|255764511|r 103 GVDGVVFDLG 112 (341)
Q Consensus 103 ~vdgIl~DLG 112 (341)
.+|.|+.||-
T Consensus 215 ~FDvIIVDlP 224 (363)
T PRK01581 215 LYDVIIIDFP 224 (363)
T ss_pred CCCEEEEECC
T ss_conf 4428999589
No 164
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=67.63 E-value=11 Score=18.73 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHH----HCCEEEEECCCHHHHHHHHHHHHH-----C-CCCEEEE
Q ss_conf 3400986886608--38888899837688288999997----489099980998999999998521-----4-8852771
Q gi|255764511|r 21 VPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRD-----Y-KEQFSLF 88 (341)
Q Consensus 21 ~PVll~Evl~~l~--~~~~g~~iD~TlG~GGHS~~iL~----~~~~liaiDrD~~ai~~a~~~l~~-----~-~~r~~~~ 88 (341)
-|-|+-..+++|+ ..++..++|-=-|.|-|| ++|. ..|-|++|.|=|+=...|+++|++ - -+++...
T Consensus 65 ~p~mvA~m~~yL~nhL~~~~~vLeiG~GSGY~a-avlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~ 143 (228)
T TIGR00080 65 APHMVAKMTEYLENHLKPGAKVLEIGTGSGYQA-AVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVI 143 (228)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH-HHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 078999999988852140355665047855899-9999987139718998535788999998765431444068865899
Q ss_pred CCC
Q ss_conf 132
Q gi|255764511|r 89 QAT 91 (341)
Q Consensus 89 ~~~ 91 (341)
++.
T Consensus 144 ~GD 146 (228)
T TIGR00080 144 EGD 146 (228)
T ss_pred ECC
T ss_conf 778
No 165
>TIGR01179 galE UDP-glucose 4-epimerase; InterPro: IPR005886 Synonym: UDP-galactose 4-epimerase UDP-glucose 4-epimerase (5.1.3.2 from EC) interconverts UDP-glucose and UDP-galactose which are precursors of glucose- and galactose-containing exopolysaccharides (EPS). A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded and described by a separate model. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0006012 galactose metabolic process.
Probab=67.55 E-value=8.3 Score=19.42 Aligned_cols=210 Identities=18% Similarity=0.194 Sum_probs=100.1
Q ss_pred CHHHH-HHHHHCCEEEEECCCHHHHHHHHHHHHH-CCCCEEEECCCHHH---HHHHHH----HCCCCEEE-----EECCC
Q ss_conf 28899-9997489099980998999999998521-48852771132788---987653----12332478-----62252
Q gi|255764511|r 48 GGYSR-SFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQ---LQDYVP----DKGVDGVV-----FDLGV 113 (341)
Q Consensus 48 GGHS~-~iL~~~~~liaiDrD~~ai~~a~~~l~~-~~~r~~~~~~~F~~---i~~~l~----~~~vdgIl-----~DLGv 113 (341)
|.|+- ++|+++-.++-+|-=...-..+=+.+++ .++++.|+.++-.+ |..++. +..||+|+ ..-|=
T Consensus 12 GSHt~~~Ll~~G~ev~vlDNLs~G~~~~l~~~~~~~G~~~~fv~gDL~D~~~l~~~f~kqql~~~idAViHFAg~~~VgE 91 (341)
T TIGR01179 12 GSHTVRQLLESGYEVVVLDNLSNGSAEALKRGEEITGKEVTFVEGDLRDRELLRRVFEKQQLEHKIDAVIHFAGLIAVGE 91 (341)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 35887887635972899815788848875002341485320587175157999999877431167546752011212525
Q ss_pred HHH----------------------------------HHHHHHHCCCCCCCCCEECCCCCCC---CCHHHHHHHCCHH--
Q ss_conf 078----------------------------------8876540734456641010435568---4189998622257--
Q gi|255764511|r 114 SSM----------------------------------QIDCGDRGFSFQKSGPLDMRMSCSG---ISASDVVNQANVK-- 154 (341)
Q Consensus 114 SS~----------------------------------Qld~~~RGFSf~~dgpLDMRmd~~~---~tA~eiln~~s~~-- 154 (341)
|.. =+--...=.++..+.||.-=-+|-| .+..+||..+...
T Consensus 92 Sv~~Pl~YY~NNv~nTl~L~~~m~~~GV~~~iFSSsAaVYG~p~~~Pi~E~~pl~~PinPYG~sKlM~E~iL~D~~~a~~ 171 (341)
T TIGR01179 92 SVQKPLKYYRNNVVNTLNLLEAMQETGVKKFIFSSSAAVYGEPESIPISEDSPLGDPINPYGRSKLMVERILRDLSKADP 171 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 57524544000468999999999981897415304214507788555022256778748665566889999999987387
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHH-HH-HHCCCCCHHHHHHHHHHHHHHHHCCC-C---HHHHHHHHHHH--HHHCCCHH
Q ss_conf 899899974463026889999999-97-52124321379999998876431277-1---25788888876--65134057
Q gi|255764511|r 155 DLTRILGILGEEKQASRIAHAIVK-RR-QSAPFQTTQDLSSLIQKTVYFSKNNR-I---HPATRSFQALR--IFVNNEIE 226 (341)
Q Consensus 155 ~L~~i~~~yGee~~a~~IA~~Iv~-~R-~~~~i~TT~eL~~iI~~~~~~~~~~k-~---hpatr~FQALR--I~VN~El~ 226 (341)
+|.-++-.|=. .|-|=-. ++ -..+-.+|.-|..+|.++.-+++..- | .-=|+==-++| |+|-|
T Consensus 172 ~~~~v~LRYFN------v~GA~p~GY~iGe~~~~~tNhLip~~~~~A~G~~~~l~IFGtDYPT~DGTcvRDYIHV~D--- 242 (341)
T TIGR01179 172 DLSYVILRYFN------VAGADPEGYEIGEDPPGITNHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMD--- 242 (341)
T ss_pred CCCEEEECCCC------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEEEECCC---
T ss_conf 67799850578------514488877236685202941899999984489973136248787679876530020020---
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEE-----CCCHHHHHHHHHHHHCCCC
Q ss_conf 899999988520244533899872-----5502389999998641788
Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSF-----HSLEDRLVKKFFASRSGKV 269 (341)
Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISF-----HSLEDRiVK~ff~~~~~~~ 269 (341)
|-++=-.|.+.|..||--.|.=- +| =|-|-+.|+..++..
T Consensus 243 -LA~AH~~Al~~L~~g~~s~~~NlG~G~G~S--V~EVi~a~~~vsG~~ 287 (341)
T TIGR01179 243 -LAEAHLAALEYLENGGESHVYNLGYGQGFS--VLEVIEAFKKVSGKD 287 (341)
T ss_pred -HHHHHHHHHHHHHCCCCEEEEECCCCCCCC--HHHHHHHHHHHCCCE
T ss_conf -777899999998607963698624675410--999999986610981
No 166
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed
Probab=66.90 E-value=11 Score=18.64 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=57.0
Q ss_pred CCCEEEECCCCCCHHHHHHHH-HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 888899837688288999997-4890999809989999999985214885277113278898765312332478622520
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~-~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341)
..|..+=||-+.-- --++++ .++++.|||.| -|-..|++.+.. +-.+.+...++.++...|...+||.|+..+.+
T Consensus 36 ~~G~L~vg~~~~~p-Pf~~~d~~~g~~~GfDvD-la~~iAk~llg~-~~~v~~v~~~~~~~~p~L~~gkvD~i~~~~ti- 111 (259)
T PRK11917 36 SKGQLIVGVKNDVP-HYALLDQATGEIKGFEID-VAKLLAKSILGD-DKKIKLVAVNAKTRGPLLDNGSVDAVIATFTI- 111 (259)
T ss_pred HCCEEEEEECCCCC-CCCEEECCCCCEEEEEHH-HHHHHHHHHCCC-CCEEEEEEECHHHHHHHHHCCCEEEEEECCCC-
T ss_conf 59989999878978-862056799967888799-999999996599-85699997067877689877985599866476-
Q ss_pred HHHHHHHHHCCCCCCCCC
Q ss_conf 788876540734456641
Q gi|255764511|r 115 SMQIDCGDRGFSFQKSGP 132 (341)
Q Consensus 115 S~Qld~~~RGFSf~~dgp 132 (341)
+++|-=.+....|
T Consensus 112 -----T~eR~k~vdFS~P 124 (259)
T PRK11917 112 -----TPERKRIYNFSEP 124 (259)
T ss_pred -----CCCHHCCEEECCC
T ss_conf -----7654305762247
No 167
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.61 E-value=11 Score=18.61 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=46.9
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEEECCCH
Q ss_conf 9999974890999809989999999985214885277113278898---7653----1-2332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~DLGvS 114 (341)
++.+++.+.+|+..|++++.+..+.+.++..+.++.++..+.++.+ +.+. . .++|.++-+-|+.
T Consensus 21 a~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~ 92 (258)
T PRK12429 21 ALALAKEGAKVVIADLNDEAAAKAAEAIKKAGGKAIGVAMDVTDEEAINAGIDKVVETFGGVDILVNNAGIQ 92 (258)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999998799999997988999999999984499189998358999999999999999829970999899888
No 168
>KOG0874 consensus
Probab=65.38 E-value=6.3 Score=20.16 Aligned_cols=29 Identities=17% Similarity=0.365 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 57899999988520244533899872550
Q gi|255764511|r 225 IEELAQGLRSAEKALKAGGLLIVVSFHSL 253 (341)
Q Consensus 225 l~~L~~~L~~~~~~L~~gGrl~VISFHSL 253 (341)
|+.+--+|.-...-|.|.--+..-||-.+
T Consensus 180 LDT~G~gla~l~sglspr~aiifFtfaTi 208 (287)
T KOG0874 180 LDTIGGGLAFLLSGLSPRTAIIFFTFATI 208 (287)
T ss_pred HHHHCHHHHHHHCCCCCCCEEEEEEEEEE
T ss_conf 24213179999707884516999983343
No 169
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=65.33 E-value=9.4 Score=19.07 Aligned_cols=61 Identities=15% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHH----CCEEEEECCCHHHHHHHHHHHHHCCCC--EEEECCCHHHHH
Q ss_conf 8888998376882889999974----890999809989999999985214885--277113278898
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYKEQ--FSLFQATFSQLQ 96 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~----~~~liaiDrD~~ai~~a~~~l~~~~~r--~~~~~~~F~~i~ 96 (341)
|+..+-|--.-.|.-+.++=.. ..+++|||--+-+++.|++.++.|... +.+....|.++.
T Consensus 61 p~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~~~~D~~~v~ 127 (247)
T TIGR00740 61 PKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEVLCMDIREVE 127 (247)
T ss_pred CCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHH
T ss_conf 8874122334323577665304687853798841888899999999987424788232010245666
No 170
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=65.14 E-value=12 Score=18.42 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=49.3
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC
Q ss_conf 7688288----99999748909998099899999999852148852771132788---9876531-----2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+..|++.+.+....+.+.+++.++..+..+.++ ++.++.. .++|.++-+-
T Consensus 17 TGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~~G~iDilVnNA 96 (255)
T PRK06113 17 TGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAVSKLGKVDILVNNA 96 (255)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 58877899999999998799999996988999999999996599089998368999999999999999819988999878
Q ss_pred CC
Q ss_conf 52
Q gi|255764511|r 112 GV 113 (341)
Q Consensus 112 Gv 113 (341)
|.
T Consensus 97 G~ 98 (255)
T PRK06113 97 GG 98 (255)
T ss_pred CC
T ss_conf 87
No 171
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=64.85 E-value=12 Score=18.39 Aligned_cols=85 Identities=14% Similarity=0.212 Sum_probs=56.0
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHH
Q ss_conf 886608388888998376882889----99997489099980998999999998521488527711327889---87653
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVP 100 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~ 100 (341)
+.+.|+.+.--.+| |-|.+|== +.+.+.+.+|+..|++++.++.+.+.++..+.+..++..+.++- ...+.
T Consensus 4 i~~lf~L~gKvalV--TG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~v~ 81 (259)
T PRK08213 4 VLELFDLTGKTALV--TGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWLAADVADEADIERLAE 81 (259)
T ss_pred HHHHHCCCCCEEEE--ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 67873999998999--4877689999999999869999999798899999999999549958999826899999999999
Q ss_pred H-----CCCCEEEEECCCH
Q ss_conf 1-----2332478622520
Q gi|255764511|r 101 D-----KGVDGVVFDLGVS 114 (341)
Q Consensus 101 ~-----~~vdgIl~DLGvS 114 (341)
. ..+|.++-+-|++
T Consensus 82 ~~~~~~G~iDiLVNNAG~~ 100 (259)
T PRK08213 82 ETLERFGHIDILVNNAGAT 100 (259)
T ss_pred HHHHHHCCCCEEEECCCCC
T ss_conf 9999839998999899778
No 172
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.77 E-value=12 Score=18.26 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=48.5
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECC-CHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEE
Q ss_conf 7688288----9999974890999809-98999999998521488527711327889---876531-----233247862
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDR-DPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDr-D~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~D 110 (341)
|-|.+|= ++.+++.+.+|+..|+ +++....+.+.+..++.++.++..+.++- .+.+.. .++|.++..
T Consensus 13 TGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDilInn 92 (250)
T PRK12825 13 TGAARGIGRAIALRLAAAGADVIVHPPSDEAAAEETVAAVEALGRRAQAVQADVTDAAALEAAVEELVERFGAIDILVNN 92 (250)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 38955899999999998799899997988789999999998539948999941899999999999999976999899989
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
-|+.
T Consensus 93 Ag~~ 96 (250)
T PRK12825 93 AGIT 96 (250)
T ss_pred CCCC
T ss_conf 9889
No 173
>PRK05785 hypothetical protein; Provisional
Probab=63.29 E-value=13 Score=18.21 Aligned_cols=170 Identities=15% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHH---CCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCC
Q ss_conf 43201101160783340098688660---838888899837688288999997489099980998999999998521488
Q gi|255764511|r 7 KTMSSAIHHTIGDHVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE 83 (341)
Q Consensus 7 ~~m~~~~~~~~~~H~PVll~Evl~~l---~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~ 83 (341)
+.|+.-|+. +.|.- --++.++.+ ...+++.++|+--|.|--+.. +....+++|+|--+.++..++... +
T Consensus 22 D~~N~~mSl--G~~~~-Wrr~~v~~~~~~~~~~~~~vLDva~GTGd~a~~-l~~~~~v~~~D~s~~ML~~a~~~~----~ 93 (225)
T PRK05785 22 ERANRLITF--GNVDR-WRAEAVKLIYKYDGKSPLKVLDAGAGPGNMAYH-LRKIRYVVALDYTEEMLRLNLVAD----D 93 (225)
T ss_pred HHHHHHHHC--CCHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHH-HHCCCEEEEEECCHHHHHHHHHCC----C
T ss_conf 988889828--97099-999999998730678888289956884399999-634786999988999999876432----1
Q ss_pred CEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCC-----CCCCCEECCCCCCCCCHHHHHHHCCHHHHHH
Q ss_conf 52771132788987653123324786225207888765407344-----5664101043556841899986222578998
Q gi|255764511|r 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSF-----QKSGPLDMRMSCSGISASDVVNQANVKDLTR 158 (341)
Q Consensus 84 r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf-----~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~ 158 (341)
+ +.+.+.+|. .++..+|.|..-+|+- .+.|.+++++= +.-+-|++ --|+......+.+-|+..-+-.
T Consensus 94 ~---v~~~ae~LP--f~d~sFD~vt~~FglR--N~~d~~~al~E~~RVlk~~~iLe~-s~P~~~~~r~~y~~Y~~~ilP~ 165 (225)
T PRK05785 94 K---VVGSFEAMP--FRDKSFDLVMSGYALH--ASDDIEKAVAEFSRVSRYQVVVAI-GKPDNVVARKLLSFYLKYILPY 165 (225)
T ss_pred C---EEEHHHHCC--CCCCCEEEEEEEEEEE--CCCCHHHHHHHHHHHCCCEEEEEE-CCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1---373185399--9988252776344300--488899999999973097799996-8998478999999999656898
Q ss_pred HHHHHCCCCH---HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9997446302---688999999997521243213799999988
Q gi|255764511|r 159 ILGILGEEKQ---ASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 (341)
Q Consensus 159 i~~~yGee~~---a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~ 198 (341)
|=+-.+..+. .+-++..|. .+.+-.+|.++++++
T Consensus 166 ig~l~~~~~~a~~Y~YL~~SI~------~fP~~~~l~~~l~~~ 202 (225)
T PRK05785 166 LACLVGPKEVCREYKKIYYIYK------RLPTNSQLRQIISRY 202 (225)
T ss_pred HHHHHCCCCCCCCCHHHHHHHH------HCCCHHHHHHHHHHH
T ss_conf 6288709998752417999999------879999999999984
No 174
>PRK08267 short chain dehydrogenase; Provisional
Probab=62.40 E-value=13 Score=18.10 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=25.2
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 999997489099980998999999998521488527711
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ 89 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~ 89 (341)
++.+.+.+.+|+..|+|++.++...+.+.. .+...+.
T Consensus 18 A~~~a~~G~~V~~~~r~~~~l~~~~~~l~~--~~~~~~~ 54 (258)
T PRK08267 18 ARLFAARGWRVGAYDINEDGLAALAAELGA--ERAWTGA 54 (258)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHCC--CCEEEEE
T ss_conf 999998799999998889999999998369--9679999
No 175
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=62.34 E-value=13 Score=18.10 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=49.8
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEEEC
Q ss_conf 7688288----9999974890999809989999999985214885277113278898---7653----1-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~DL 111 (341)
|-|.+|= ++.+.+.+.+|+..|++++.+..+.+.++..+.++..+..+.++.+ ..+. . .++|..+-+-
T Consensus 16 TG~s~GIG~aiA~~la~~Ga~Vii~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDiLVnNA 95 (265)
T PRK07097 16 TGASYGIGFAIAKAYAEAGATIVFNDIKQELVDKGLAAYRELGIEAHGYVCDVTDEDGIQAMVAQIEKEVGVIDILVNNA 95 (265)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 58576899999999998699999995998999999999995499179999328999999999999999829998999899
Q ss_pred CCHH
Q ss_conf 5207
Q gi|255764511|r 112 GVSS 115 (341)
Q Consensus 112 GvSS 115 (341)
|+..
T Consensus 96 G~~~ 99 (265)
T PRK07097 96 GIIR 99 (265)
T ss_pred CCCC
T ss_conf 8999
No 176
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=60.21 E-value=14 Score=17.86 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=42.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 8998376882889999974890-9998099899999999852148852771132788987653123324786
Q gi|255764511|r 39 VILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341)
-+||.=-|.||=|.++-+.+-+ +.|+|.|+.|.+.-+.+. ++. .+++.-.+++..-....+|.++.
T Consensus 2 ~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~---~~~--~~~~Di~~~~~~~~~~~vDll~g 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANF---PNK--LIEGDITKIDEKDFIPDIDLLTG 68 (275)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHC---CCC--CCCCCHHHCCCCCCCCCCCEEEE
T ss_conf 59997678078999999869989999968999999999887---999--52588644653213788788986
No 177
>TIGR00255 TIGR00255 conserved hypothetical protein TIGR00255; InterPro: IPR005229 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures .
Probab=59.91 E-value=6 Score=20.34 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=68.0
Q ss_pred CCEEEEECCCHHHHHHHHHHCCCCCCC-CCEEC-CCCC-----CCCCHHHHHHHCCHHHHHHHHHHHCCCCH--HHHHHH
Q ss_conf 324786225207888765407344566-41010-4355-----68418999862225789989997446302--688999
Q gi|255764511|r 104 VDGVVFDLGVSSMQIDCGDRGFSFQKS-GPLDM-RMSC-----SGISASDVVNQANVKDLTRILGILGEEKQ--ASRIAH 174 (341)
Q Consensus 104 vdgIl~DLGvSS~Qld~~~RGFSf~~d-gpLDM-Rmd~-----~~~tA~eiln~~s~~~L~~i~~~yGee~~--a~~IA~ 174 (341)
++-=+++==|++.+.-.....++...+ .+.|. |++- ..-+-.|-|...=...+...+.+|-+.+. -..++.
T Consensus 80 ~~~~l~~~~v~~~~d~k~~~nl~~~~E~~~~D~l~l~gv~~~~E~~~~~d~i~~~~~~a~e~~l~~~~~~R~~EG~~l~~ 159 (293)
T TIGR00255 80 LNKPLADELVAALRDVKAQTNLQLEGEINLVDFLRLPGVVQVQEQDLQQDAIEALILDALEEALKDFIEMREKEGEKLKK 159 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 42688999999999999862211036887200003786068504312468999999999999999999876775599999
Q ss_pred HHHHHHHH--CCCCCH-HHHHHHHHHHHHHHHCCCCHHHH------------HHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 99999752--124321-37999999887643127712578------------8888876651340578999999885202
Q gi|255764511|r 175 AIVKRRQS--APFQTT-QDLSSLIQKTVYFSKNNRIHPAT------------RSFQALRIFVNNEIEELAQGLRSAEKAL 239 (341)
Q Consensus 175 ~Iv~~R~~--~~i~TT-~eL~~iI~~~~~~~~~~k~hpat------------r~FQALRI~VN~El~~L~~~L~~~~~~L 239 (341)
-|...-.. ..+..| ...++|+..- +-.-..++.-.+ -+.-|.||-||.||.-|+.-.....++|
T Consensus 160 ~i~~~l~~~~~~~~~v~~~~~~v~~~~-rerl~~~~~~~~~~~ld~~R~~~E~~~lA~R~Di~EEi~RL~~H~~~~~~iL 238 (293)
T TIGR00255 160 DILQRLDQIEEEVKKVRSAMPDVLQKQ-RERLLARIEDLAQEVLDENRLEQELALLAQRIDIAEEIDRLKSHVKEFYNIL 238 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999998736999999-9999999999999742277899999998510575889999999999999988
Q ss_pred CCCCEEE
Q ss_conf 4453389
Q gi|255764511|r 240 KAGGLLI 246 (341)
Q Consensus 240 ~~gGrl~ 246 (341)
+.||.++
T Consensus 239 ~~g~avG 245 (293)
T TIGR00255 239 KKGEAVG 245 (293)
T ss_pred HHCCCCC
T ss_conf 5078642
No 178
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=59.67 E-value=15 Score=17.80 Aligned_cols=82 Identities=16% Similarity=0.278 Sum_probs=60.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHH-HHHHHHCCE-EEEECCCHHHHHHHHHHHHHC----------
Q ss_conf 11607833400986886608388888998376882889-999974890-999809989999999985214----------
Q gi|255764511|r 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYS-RSFCKMGSN-VIALDRDPFAVSCGQETMRDY---------- 81 (341)
Q Consensus 14 ~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS-~~iL~~~~~-liaiDrD~~ai~~a~~~l~~~---------- 81 (341)
....++--|-++.++++-+...++.+|+|---|-|-=. ++-|..+++ -+|+..-+.+-..|+...+.+
T Consensus 20 ~~vYGEllp~fis~ii~~~~l~~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~ 99 (205)
T pfam08123 20 NEVYGELLPEFLSDVLDKCNLGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQDEEFKKRCKLFGKK 99 (205)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 75511358899999999839897688998588832999999987096538888865668999999999999999995887
Q ss_pred CCCEEEECCCHHHH
Q ss_conf 88527711327889
Q gi|255764511|r 82 KEQFSLFQATFSQL 95 (341)
Q Consensus 82 ~~r~~~~~~~F~~i 95 (341)
...+.+.+++|-+-
T Consensus 100 ~~~~~l~~gdFl~~ 113 (205)
T pfam08123 100 LGKIEFIRGSFLDN 113 (205)
T ss_pred CCCEEEEECCCCCC
T ss_conf 68738997777885
No 179
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.40 E-value=15 Score=17.66 Aligned_cols=62 Identities=18% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHHH-----CCCCEEEEECCC
Q ss_conf 9999974890999809989999999985214885277113278898---76531-----233247862252
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPD-----KGVDGVVFDLGV 113 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~~-----~~vdgIl~DLGv 113 (341)
++.+++.+.+|+..||+++.+....+.+.+.+ ++.++...+++.+ +.+.. .++|+++..-|.
T Consensus 22 A~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD~lv~naG~ 91 (238)
T PRK05786 22 AYFALREGASVYAFARSEEKLKEIKKTLAKYG-NVIYVVGDVSKLEGAREAAEKAAKVFGALHGLVVTAGG 91 (238)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999879999999698899999999874359-77999757899999999999999983998879980575
No 180
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=56.95 E-value=14 Score=17.90 Aligned_cols=37 Identities=24% Similarity=0.415 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 76882889999974890999809989999999985214
Q gi|255764511|r 44 TFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 (341)
Q Consensus 44 TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~ 81 (341)
|+|. |=+..++..+-.|.-+|++++++..+.+++...
T Consensus 9 ~mG~-~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~ 45 (180)
T pfam02737 9 TMGA-GIAQVFARAGLEVVLVDISEEALEKARARIEKS 45 (180)
T ss_pred HHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 8999-999999967993999979989999999999998
No 181
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=56.70 E-value=9.8 Score=18.95 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=18.2
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 65134057899999988520244533899
Q gi|255764511|r 219 IFVNNEIEELAQGLRSAEKALKAGGLLIV 247 (341)
Q Consensus 219 I~VN~El~~L~~~L~~~~~~L~~gGrl~V 247 (341)
|..|--=+-|..++......|+|||.+++
T Consensus 14 IHLN~GD~Gl~~~f~~~~~~l~pgg~lil 42 (110)
T pfam06859 14 VHLNWGDEGLKRFFRRIYRLLRPGGILIL 42 (110)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 55546428899999999996188988999
No 182
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.45 E-value=17 Score=17.45 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=44.4
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHH----H-CCCCEEEEECCCH
Q ss_conf 999997489099980998999999998521488527711327889---87653----1-2332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVP----D-KGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~----~-~~vdgIl~DLGvS 114 (341)
++.+.+.+.+|+..||+++.++...+.++.++.+..++..+-++. +.... . ..+|..+-+=|++
T Consensus 23 A~~la~~Ga~V~l~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiLVNNAGi~ 94 (238)
T PRK07666 23 AIALAKEGVNVGLLARSEENLKAVAKEVEAEGVKAVIATADVSDYEEVTTAIETLKNGLGSIDILINNAGIS 94 (238)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999998799899998999999999999995599279999307999999999999999819987899847457
No 183
>KOG1661 consensus
Probab=56.00 E-value=17 Score=17.41 Aligned_cols=61 Identities=23% Similarity=0.402 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHH---H-HCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 3400986886608--3888889983768828899999---7-4890999809989999999985214
Q gi|255764511|r 21 VPVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFC---K-MGSNVIALDRDPFAVSCGQETMRDY 81 (341)
Q Consensus 21 ~PVll~Evl~~l~--~~~~g~~iD~TlG~GGHS~~iL---~-~~~~liaiDrD~~ai~~a~~~l~~~ 81 (341)
-|-|-.+++++|. .+||-.|+|---|.|--|..+- . .+...+|||--|+-+..+++.+.++
T Consensus 65 Ap~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~ 131 (237)
T KOG1661 65 APHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD 131 (237)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5478999999999862347310133787408999999994577766514441599999999877765
No 184
>PRK06346 consensus
Probab=55.59 E-value=17 Score=17.36 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=48.9
Q ss_pred CCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEE
Q ss_conf 37688288----999997489099980998999999998521488527711327889---876531-----233247862
Q gi|255764511|r 43 ATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~D 110 (341)
-|-|.+|= ++.+.+.+.+|+-.||+++.+....+.+...+.+..++....++- .+.+.. .++|.++-+
T Consensus 10 ITGgs~GIG~a~a~~la~~Ga~V~i~~r~~e~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~i~~~~~~fg~iDiLVnN 89 (251)
T PRK06346 10 VTGAASGMGKSIAELFAKEGAKVVVADLNLERAQKVVEEITSNGGTAIAVVANVTKQEDIENMVDTAVDTYGTLDILVNN 89 (251)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 94757889999999999879989999798999999999999639908999778898999999999999982999799989
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
-|+.
T Consensus 90 Agi~ 93 (251)
T PRK06346 90 AGIM 93 (251)
T ss_pred CCCC
T ss_conf 9889
No 185
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family; InterPro: IPR011875 This entry describes Corynebacterium glutamicum GlgA and closely related proteins in other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related IPR011835 from INTERPRO, family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor ..
Probab=54.46 E-value=6.8 Score=19.98 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=55.6
Q ss_pred EEEEECCCHHHHHH-----HHHHHHHCC-----------CCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHH-----
Q ss_conf 09998099899999-----999852148-----------852771132788987653123324786225207888-----
Q gi|255764511|r 60 NVIALDRDPFAVSC-----GQETMRDYK-----------EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI----- 118 (341)
Q Consensus 60 ~liaiDrD~~ai~~-----a~~~l~~~~-----------~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Ql----- 118 (341)
+|+|.+-+++ +.- +++-|+.|+ .-+.=-|.+|..|.-+|... ..|+=+= |.-|=|
T Consensus 63 ~v~~Y~~~~~-L~~GldPran~aL~tfSvDL~m~~d~~~~~vvHsHTWYa~LAG~LAk~-Lyd~PlV--vTaHSLEPLRP 138 (416)
T TIGR02149 63 KVLGYRPWSE-LKEGLDPRANKALKTFSVDLAMANDVEDADVVHSHTWYAALAGHLAKL-LYDVPLV--VTAHSLEPLRP 138 (416)
T ss_pred EEEECCCCHH-HCCCCCHHHHHHHCCHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHH-HCCCCEE--EEEECCCCCCC
T ss_conf 8874078743-225677225754023115788761100271553207888789999999-6699839--97303788871
Q ss_pred -HHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHH--HHHHHHH--HHHHCCCCCHHHHHH
Q ss_conf -76540734456641010435568418999862225789989997446302688--9999999--975212432137999
Q gi|255764511|r 119 -DCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASR--IAHAIVK--RRQSAPFQTTQDLSS 193 (341)
Q Consensus 119 -d~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~--IA~~Iv~--~R~~~~i~TT~eL~~ 193 (341)
+..+=|=-|+- ===|-++++.|+|-+=-.|..-=.+||+.|=+..-.+- |-+-|-. ++.-+++.++.-|.+
T Consensus 139 WK~EQLGgGY~l----SsW~EktA~~aAd~vIAVS~amr~DiL~~YP~lD~~kv~Vv~NGId~~~y~~~~~~~~~~v~~~ 214 (416)
T TIGR02149 139 WKKEQLGGGYKL----SSWAEKTAIEAADRVIAVSGAMREDILKVYPDLDPEKVHVVYNGIDTKEYKPAADDDGNKVLDR 214 (416)
T ss_pred CHHHHCCCCCCC----CHHHHHHHHHHCCCEEEHHHHCHHHHHCCCCCCCCCCEEEEECCCCHHHHCCCCCCCHHHHHHH
T ss_conf 317565897420----2478888998504065311103355831586888464688864764576068888741134663
Q ss_pred H
Q ss_conf 9
Q gi|255764511|r 194 L 194 (341)
Q Consensus 194 i 194 (341)
+
T Consensus 215 ~ 215 (416)
T TIGR02149 215 Y 215 (416)
T ss_pred H
T ss_conf 2
No 186
>PRK07454 short chain dehydrogenase; Provisional
Probab=54.39 E-value=18 Score=17.24 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=44.1
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEECCCH
Q ss_conf 999997489099980998999999998521488527711327889---876531-----2332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~DLGvS 114 (341)
++.+.+.+.+|+..|||++.++...+.+...+.++.++..+.++. ...+.. ..+|..+-+=|+.
T Consensus 23 A~~la~~G~~V~l~~R~~~~l~~~~~e~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnNAG~~ 94 (241)
T PRK07454 23 ALAFAKAGWDLALVARSQDALEALAEELRSTGVKVAAYSIDLSNPEAIAPGIAELLEQFGCPSVLINNAGAA 94 (241)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 999998799899998999999999999996599289999518999999999999999759988999889889
No 187
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=54.22 E-value=18 Score=17.22 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=19.0
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHH
Q ss_conf 09868866083888889983768828899
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSR 52 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~ 52 (341)
.|-+.++.|...+ =.||+.|+|+||-++
T Consensus 40 ~l~~~i~~L~~l~-P~FvSVTyGAggstr 67 (296)
T PRK09432 40 TLWNSIDRLSSLK-PKFVSVTYGANSGER 67 (296)
T ss_pred HHHHHHHHHHCCC-CCEEEECCCCCCCCH
T ss_conf 9999999985169-998996079899773
No 188
>PRK05866 short chain dehydrogenase; Provisional
Probab=54.11 E-value=18 Score=17.21 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=48.5
Q ss_pred CCCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEE
Q ss_conf 3768828899----9997489099980998999999998521488527711327889---876531-----233247862
Q gi|255764511|r 43 ATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~D 110 (341)
-|-|..|==+ .+.+.+.+|+..||+++.++...+.+...+.+...+..+.++. +..... .++|.++-+
T Consensus 45 ITGassGIG~aiA~~la~~Ga~Vvl~~R~~~~l~~~~~~i~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiLVNN 124 (290)
T PRK05866 45 LTGASSGIGEAAAEKFARRGATVVAVARRKDLLDAVADRITAAGGDAMAIPCDLSDLDAVDALVADVEERIGGVDILINN 124 (290)
T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 90813099999999999869989999899999999999999649908999778898999999999999985998889975
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
=|++
T Consensus 125 AG~~ 128 (290)
T PRK05866 125 AGRS 128 (290)
T ss_pred CCCC
T ss_conf 7666
No 189
>KOG1986 consensus
Probab=53.50 E-value=19 Score=17.15 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=20.6
Q ss_pred CCCC-CCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4456-64101043556841899986222578998999744630268899999999
Q gi|255764511|r 126 SFQK-SGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKR 179 (341)
Q Consensus 126 Sf~~-dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~ 179 (341)
.|+. +|..=.|.-+ -|--|++..+ ..|..-|++|.-|--+|+.++..
T Consensus 469 ~Yq~s~g~~riRVtT---~~r~~~d~~~----~~i~~~FDqEaaAV~mAR~~~~k 516 (745)
T KOG1986 469 QYQHSSGQKRIRVTT---LARPWADSGS----PEISQSFDQEAAAVLMARLALLK 516 (745)
T ss_pred EEECCCCCEEEEEEE---EEHHHCCCCC----HHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 887478837999998---6400024556----67663302688999999999986
No 190
>KOG1499 consensus
Probab=53.30 E-value=19 Score=17.13 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=54.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 8888899837688288999997489-099980998999999998521--488527711327889876531233247862
Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341)
Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341)
-.+.+++|--.|.|=-|..=.+++. +|+|+|.-..| ..|.+.... +.+.++++++.-.++ .|+..+||-|+-.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP~eKVDiIvSE 134 (346)
T KOG1499 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELPVEKVDIIVSE 134 (346)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECHHHH-HHHHHHHHHCCCCCEEEEEECCEEEE--ECCCCCEEEEEEH
T ss_conf 0797899757881288999887375339999626899-99999998568660599950305787--6475540299630
No 191
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=53.03 E-value=19 Score=17.10 Aligned_cols=69 Identities=22% Similarity=0.414 Sum_probs=45.8
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC
Q ss_conf 7688288----99999748909998099899999999852148852771132788---9876531-----2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+..|++++.+..+.+.+++.+ ++.++..+.++ +...+.. .++|.++.+-
T Consensus 6 TGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD~LVnNA 84 (259)
T PRK08340 6 TASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKELG-EVYAIKADLSDKDDLKNLVKEAWELLGGIDALVWNA 84 (259)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC-CEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 7587789999999999879999999799899999999987418-879999636998999999999999859988899857
Q ss_pred CC
Q ss_conf 52
Q gi|255764511|r 112 GV 113 (341)
Q Consensus 112 Gv 113 (341)
|.
T Consensus 85 g~ 86 (259)
T PRK08340 85 GN 86 (259)
T ss_pred CC
T ss_conf 66
No 192
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=52.94 E-value=11 Score=18.58 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH
Q ss_conf 88888766513405789999998852024453389987255023899999986
Q gi|255764511|r 212 RSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264 (341)
Q Consensus 212 r~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~ 264 (341)
-+|.|-|+-|+.||+-|+.-+.....+|..||-+.= -=|=++-.|.|.
T Consensus 208 ~al~a~K~DI~EEldRL~sHv~~~~~iL~~~g~vGR-----kLDFl~QE~nRE 255 (290)
T COG1561 208 VALLAQKADIAEELDRLKSHVKEFRNILEKGGPVGR-----KLDFLMQEFNRE 255 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHH
T ss_conf 999988710898999999999999999861886104-----689999998578
No 193
>KOG1271 consensus
Probab=52.93 E-value=18 Score=17.28 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 68899999999752124321379999998876431277125788888876651340578999999885202445338998
Q gi|255764511|r 169 ASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVV 248 (341)
Q Consensus 169 a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VI 248 (341)
|-.+|+.|.+.++-.. .-+++-.+|+..-.... ....---.-||-|+-.---.--.-|.--+....++|+|||+++|-
T Consensus 103 AV~LA~niAe~~~~~n-~I~f~q~DI~~~~~~~~-qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvIt 180 (227)
T KOG1271 103 AVELAQNIAERDGFSN-EIRFQQLDITDPDFLSG-QFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVIT 180 (227)
T ss_pred HHHHHHHHHHHCCCCC-CEEEEEEECCCCCCCCC-CEEEEEECCCEEEEECCCCCCCCCEEEEHHHHHHCCCCCCEEEEE
T ss_conf 9999987887527885-31688732257755554-323896057412255077776654344355686303889679998
Q ss_pred EECCCHHHHHHHHHHHH
Q ss_conf 72550238999999864
Q gi|255764511|r 249 SFHSLEDRLVKKFFASR 265 (341)
Q Consensus 249 SFHSLEDRiVK~ff~~~ 265 (341)
|-.=-+|-+|+.|=..+
T Consensus 181 SCN~T~dELv~~f~~~~ 197 (227)
T KOG1271 181 SCNFTKDELVEEFENFN 197 (227)
T ss_pred ECCCCHHHHHHHHHCCC
T ss_conf 55765899999972597
No 194
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.85 E-value=19 Score=17.08 Aligned_cols=37 Identities=16% Similarity=0.296 Sum_probs=26.4
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37688288999997489099980998999999998521
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
+|+|. |=+..++..+-.|+-+|++++++..+.++++.
T Consensus 11 G~MG~-~IA~~~a~~G~~V~l~D~~~e~l~~~~~~i~~ 47 (289)
T PRK09260 11 GVMGR-GIAYVFASSGFQTTLVDISQEQLASAQQEIES 47 (289)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 88789-99999996899889997998999999999999
No 195
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=52.37 E-value=19 Score=17.03 Aligned_cols=126 Identities=19% Similarity=0.209 Sum_probs=87.9
Q ss_pred CCCEEEECCCCCCHH--HHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH--CCCCEEEEE
Q ss_conf 888899837688288--999997489-099980998999999998521488527711327889876531--233247862
Q gi|255764511|r 36 PGKVILDATFGAGGY--SRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD--KGVDGVVFD 110 (341)
Q Consensus 36 ~~g~~iD~TlG~GGH--S~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~--~~vdgIl~D 110 (341)
.-.++|=+-=|.=|+ ++.+|+... .|||+|.-.+++...- . ..||+|+.+..+--.+.+.. .+-|-||-=
T Consensus 315 ~~~vlilgvngfig~hl~~~~l~~~~~~v~g~d~~~~~i~~~~---~--~p~~~f~~gdi~~~~~wie~~ikkcdvvlpl 389 (660)
T PRK08125 315 RTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFL---G--HPRFHFVEGDISIHSEWIEYHIKKCDVVLPL 389 (660)
T ss_pred CEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHH---C--CCCEEEEECCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 2279998344136789999985038858998865753455753---4--9954888156146689999887545767320
Q ss_pred CCCHHH--HHHHHHHCCCCCCCCCEEC-CC-------------------------C--CC----C-CCHHHHHHHCCHHH
Q ss_conf 252078--8876540734456641010-43-------------------------5--56----8-41899986222578
Q gi|255764511|r 111 LGVSSM--QIDCGDRGFSFQKSGPLDM-RM-------------------------S--CS----G-ISASDVVNQANVKD 155 (341)
Q Consensus 111 LGvSS~--Qld~~~RGFSf~~dgpLDM-Rm-------------------------d--~~----~-~tA~eiln~~s~~~ 155 (341)
.++..+ -..+|-|=|-...+.-|.. |+ | .+ | +.-.-|+.+.|..-
T Consensus 390 vaiatp~~y~~~pl~vfeldfe~nl~ivr~c~ky~kriifpstsevygm~~d~~f~ed~s~li~gpi~~~RWiYs~sKql 469 (660)
T PRK08125 390 VAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYRKRIIFPSTSEVYGMCTDKYFDEDHSNLIVGPINKQRWIYSVSKQL 469 (660)
T ss_pred HHHCCHHHHHCCCCEEEEECHHHCCHHHHHHHHHCCEEEECCHHHHCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHH
T ss_conf 55347477634860478732675528999999748778965605510147886768555661567755543578778999
Q ss_pred HHHHHHHHCCC
Q ss_conf 99899974463
Q gi|255764511|r 156 LTRILGILGEE 166 (341)
Q Consensus 156 L~~i~~~yGee 166 (341)
|.++++-||++
T Consensus 470 ldrvi~Ayg~~ 480 (660)
T PRK08125 470 LDRVIWAYGEK 480 (660)
T ss_pred HHHHHHHHHHH
T ss_conf 88999987765
No 196
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=51.91 E-value=15 Score=17.75 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 899999988520244533899872550
Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHSL 253 (341)
Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHSL 253 (341)
+=++.+....+.++||+++++=|.|-+
T Consensus 209 ~K~~I~~hL~k~m~~Ga~l~~Rsa~Gl 235 (277)
T pfam03059 209 EKAKVIDHLGKHMAPGALLVLRSAHGA 235 (277)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 599999999974589967999611217
No 197
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=51.83 E-value=20 Score=16.98 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=41.1
Q ss_pred CCCCCCEEEECCCCCCHH-HHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 838888899837688288-9999974-89099980998999999998521488527711327889876531233247862
Q gi|255764511|r 33 NPAPGKVILDATFGAGGY-SRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341)
Q Consensus 33 ~~~~~g~~iD~TlG~GGH-S~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341)
+..||..+.=-=+|+=|| +-.+.++ +.+|+|||+.++-.+.|++.-.+ .+++++-++..+.+... +|+|+--
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-----~~i~~~~~~~~~~~~~~-~d~ii~t 236 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-----HVINSSDSDALEAVKEI-ADAIIDT 236 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCC-----EEEECCCCHHHHHHHHH-CCEEEEC
T ss_conf 89999899998774899999999998699699995787799999984882-----89976781166776734-7399998
Q ss_pred CCCHHHHHHHHHH
Q ss_conf 2520788876540
Q gi|255764511|r 111 LGVSSMQIDCGDR 123 (341)
Q Consensus 111 LGvSS~Qld~~~R 123 (341)
.| ..-++.+-+
T Consensus 237 v~--~~~~~~~l~ 247 (339)
T COG1064 237 VG--PATLEPSLK 247 (339)
T ss_pred CC--HHHHHHHHH
T ss_conf 77--455999999
No 198
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=51.76 E-value=20 Score=16.97 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=39.4
Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 74890999809989999999985214885277113278898765312332478622520
Q gi|255764511|r 56 KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341)
Q Consensus 56 ~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341)
..++++.|||.|- +-..+++ + +-++.+...+|+.+-.-+....+|.++..+.++
T Consensus 41 ~~~g~~~GfdvDl-~~~ia~~-l---g~~~e~~~~~~~~~i~~l~~g~~D~~~~~~~~T 94 (247)
T PRK09495 41 KQGDKYVGFDVDL-WAAIAKE-L---KLDYTLKPMDFSGIIPALQTKNIDLALAGITIT 94 (247)
T ss_pred CCCCEEEEEHHHH-HHHHHHH-H---CCCEEEEECCHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 6799278829999-9999999-6---994699977889999999769956364660147
No 199
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=51.29 E-value=20 Score=16.92 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=49.8
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEEEC
Q ss_conf 7688288----9999974890999809989999999985214885277113278898---7653----1-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~DL 111 (341)
|-|..|- ++.+++.+.+|+-.|++++....+.+.+.+.+.++..+..+-++.+ ..+. . .++|..+-+-
T Consensus 13 TGgs~GIG~a~A~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVnnA 92 (262)
T PRK13394 13 TGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNA 92 (262)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 58577899999999998799999997988999999999996299399998158999999999999999819999999899
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|+.
T Consensus 93 G~~ 95 (262)
T PRK13394 93 GIQ 95 (262)
T ss_pred CCC
T ss_conf 889
No 200
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=51.25 E-value=18 Score=17.23 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37688288999997489099980998999999998521
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
+|+|. |=+..++..+-.|+.+|.+++++..+.+++..
T Consensus 11 G~mG~-giA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~ 47 (308)
T PRK06129 11 GLIGR-AWAIVFARAGHRVRLWDADPAALAAAPAYIAG 47 (308)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 89999-99999985899389998988999999999999
No 201
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=50.59 E-value=11 Score=18.58 Aligned_cols=43 Identities=26% Similarity=0.403 Sum_probs=33.2
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCH
Q ss_conf 86886608388888998376882889999974---89099980998
Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDP 68 (341)
Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~ 68 (341)
.|+|.+...+++.++||.--|+|-.|+-|-.. .|.|+++--++
T Consensus 38 ~E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e 83 (238)
T COG4798 38 GEVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAE 83 (238)
T ss_pred CCEEEEECCCCCCEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHH
T ss_conf 3026775268998799983488507444110028750598856434
No 202
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.55 E-value=19 Score=17.13 Aligned_cols=37 Identities=16% Similarity=0.441 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37688288999997489099980998999999998521
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
+|+|. |=+..++..+-.|+-+|.+++++..+.+++..
T Consensus 11 G~mG~-~IA~~~a~~G~~V~l~D~~~~~~~~~~~~i~~ 47 (284)
T PRK07819 11 GQMGS-GIAEVCARAGVDVLVFETTEEAATAGRNRIEK 47 (284)
T ss_pred CHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 78999-99999995799089997988999999999999
No 203
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=50.04 E-value=21 Score=16.80 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=55.1
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHHHHHHHHHCCC------CEEEECCCHHHHHHHHH-HC
Q ss_conf 608388888998376882889999974890-99980998999999998521488------52771132788987653-12
Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKE------QFSLFQATFSQLQDYVP-DK 102 (341)
Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~a~~~l~~~~~------r~~~~~~~F~~i~~~l~-~~ 102 (341)
-+.-.+|-.++|-=.|||==|+.+=..|.. |+|||.=.+.|..|+.-.++-+= ++.+.+..-.++.+--. ..
T Consensus 79 ~~~~~~G~~vLDVGCGGGlLsE~lAR~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~~h~~~ 158 (275)
T TIGR01983 79 ELLKDSGLRVLDVGCGGGLLSEPLARLGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEEQHTKK 158 (275)
T ss_pred HHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 34117897799842785788899975588425775211779999998887334023311114544430788730557841
Q ss_pred CCCEEEE
Q ss_conf 3324786
Q gi|255764511|r 103 GVDGVVF 109 (341)
Q Consensus 103 ~vdgIl~ 109 (341)
.||.|+.
T Consensus 159 ~FD~V~~ 165 (275)
T TIGR01983 159 SFDVVTC 165 (275)
T ss_pred CCCEEEE
T ss_conf 5733764
No 204
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.95 E-value=22 Score=16.70 Aligned_cols=37 Identities=14% Similarity=0.152 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37688288999997489099980998999999998521
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
+|+|. |=+..++..+-.|+-+|++++++..+.+++..
T Consensus 12 G~MG~-gIA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~ 48 (288)
T PRK08293 12 GVLGS-QIAFQTAFKGFDVTIYDISEEALDAAKRRLAK 48 (288)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 88999-99999995799289998988999999999999
No 205
>TIGR01259 comE comEA protein; InterPro: IPR004787 The comE locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. comEA and comEC are required for transformability, whereas the products of comEB and of the overlapping comER, which is transcribed in the reverse direction, are dispensable . ComEA has been shown to be an integral membrane protein, as predicted from hydropathy analysis, with its C-terminal domain outside the cytoplasmic membrane. This C-terminal domain possesses a sequence with similarity to those of several proteins known to be involved in nucleic acid transactions including UvrC and a human protein that binds to the replication origin of the Human herpesvirus 4 (Epstein-Barr virus) ..
Probab=48.45 E-value=10 Score=18.90 Aligned_cols=48 Identities=27% Similarity=0.473 Sum_probs=37.9
Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 841899986222578998999744630268899999999752-124321379999
Q gi|255764511|r 141 GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194 (341)
Q Consensus 141 ~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~-~~i~TT~eL~~i 194 (341)
+-.+.=.||.++++||..|= --| -.=|++|+.||+. +.|.|-.||..+
T Consensus 59 ~~~~~VnlN~As~~EL~~l~-GiG-----P~kA~aIi~YRe~nG~F~SvddL~kV 107 (124)
T TIGR01259 59 GKEAAVNLNKASLEELQALP-GIG-----PAKAKAIIEYREENGAFKSVDDLTKV 107 (124)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHHCCCCCCHHHHHCC
T ss_conf 15001344067899986369-998-----13379999999856997775550035
No 206
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=48.45 E-value=17 Score=17.42 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=64.3
Q ss_pred CCEEEE-ECCCHHHHHH-----HHHHCCCCCCCCCEECCCCC--CCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 324786-2252078887-----65407344566410104355--684189998622257899899974463026889999
Q gi|255764511|r 104 VDGVVF-DLGVSSMQID-----CGDRGFSFQKSGPLDMRMSC--SGISASDVVNQANVKDLTRILGILGEEKQASRIAHA 175 (341)
Q Consensus 104 vdgIl~-DLGvSS~Qld-----~~~RGFSf~~dgpLDMRmd~--~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~ 175 (341)
||-+|. .||||.+++- ...+|+ |+ --||.--++ .|..--+......--+| =++.
T Consensus 98 Fd~~LVdkL~Y~vP~~l~emI~~~~~g~-F~--~~lDLGCGTGL~G~~lR~~a~~ltGvDi---------------S~nM 159 (287)
T COG4976 98 FDHILVDKLGYSVPELLAEMIGKADLGP-FR--RMLDLGCGTGLTGEALRDMADRLTGVDI---------------SENM 159 (287)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCC-CC--EEEECCCCCCCCCHHHHHHHHHCCCCCH---------------HHHH
T ss_conf 9999998735761899999997515776-20--2344266767662767888865127762---------------6999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCH
Q ss_conf 99997521243213799999988-76431277125788888876651340578999999885202445338998725502
Q gi|255764511|r 176 IVKRRQSAPFQTTQDLSSLIQKT-VYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 (341)
Q Consensus 176 Iv~~R~~~~i~TT~eL~~iI~~~-~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLE 254 (341)
+.++++++-.. |.-.++++.=. ..-..+.-.-.||-||.= |..|+.++..+-..|+|||-++. |--+++
T Consensus 160 l~kA~eKg~YD-~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Y--------lG~Le~~~~~aa~~L~~gGlfaF-SvE~l~ 229 (287)
T COG4976 160 LAKAHEKGLYD-TLYVAEAVLFLEDLTQERFDLIVAADVLPY--------LGALEGLFAGAAGLLAPGGLFAF-SVETLP 229 (287)
T ss_pred HHHHHHCCCHH-HHHHHHHHHHHHHCCCCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHCCCCCEEEE-EECCCC
T ss_conf 99988624157-888989998755226776430124567886--------40034689999985589864898-723167
Q ss_pred H
Q ss_conf 3
Q gi|255764511|r 255 D 255 (341)
Q Consensus 255 D 255 (341)
|
T Consensus 230 ~ 230 (287)
T COG4976 230 D 230 (287)
T ss_pred C
T ss_conf 7
No 207
>cd05041 PTKc_Fes_like Catalytic Domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=48.38 E-value=22 Score=16.63 Aligned_cols=172 Identities=16% Similarity=0.189 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 888899837688288999997489099980998999999998521--488527711327889876531233247862252
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341)
.+..|+=.-|-.||.-..+|.....- ++ -...+..+.+.... |-..-.++|.+-.-- +++-...-..-|.|+|+
T Consensus 64 ~~~~~lvmEy~~~G~L~~~l~~~~~~--~~-~~~~~~i~~~ia~gl~yLH~~~ivHrDlKp~-NiLl~~~~~~Kl~DFGl 139 (251)
T cd05041 64 KQPIYIVMELVPGGSLLTFLRKKKNR--LT-VKKLLQMSLDAAAGMEYLESKNCIHRDLAAR-NCLVGENNVLKISDFGM 139 (251)
T ss_pred CCEEEEEEECCCCCCHHHHHHHCCCC--CC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH-HEEECCCCCEEEEECCC
T ss_conf 99899999847999689999735799--99-9999999999999999883289527861540-08988999189816588
Q ss_pred HHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHC------CHHHHHHHHH---HHCCCCHHH----HHHHHHHHH-
Q ss_conf 07888765407344566410104355684189998622------2578998999---744630268----899999999-
Q gi|255764511|r 114 SSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQA------NVKDLTRILG---ILGEEKQAS----RIAHAIVKR- 179 (341)
Q Consensus 114 SS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~------s~~~L~~i~~---~yGee~~a~----~IA~~Iv~~- 179 (341)
|... ++... +. .++. +..|-...|-|+++.- +.=.+.-+++ .+|+.+++. .+...|...
T Consensus 140 a~~~-~~~~~--~~-~~~~---~~~p~~y~APE~l~~~~~~~~sDIwS~Gv~l~El~t~g~~P~~~~~~~~~~~~i~~~~ 212 (251)
T cd05041 140 SREE-EGGIY--TV-SDGL---KQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRERIESGY 212 (251)
T ss_pred CCCC-CCCCE--EE-ECCC---CCCCCCCCCHHHHHCCCCCCCEECCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 6046-99956--86-2686---7646635489998259999605501748999999807999999999899999998289
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7521243213799999988764312771257888888766
Q gi|255764511|r 180 RQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRI 219 (341)
Q Consensus 180 R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI 219 (341)
|-.-|-....++.++|..|.......+ =.+..+++.|+|
T Consensus 213 ~~~~p~~~~~~l~~li~~c~~~dP~~R-Ps~~eil~~L~~ 251 (251)
T cd05041 213 RMPAPQLCPEEIYRLMLQCWAYDPENR-PSFSEIYNELQI 251 (251)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCHHHC-CCHHHHHHHHCC
T ss_conf 899864377999999999828896679-299999996669
No 208
>KOG2671 consensus
Probab=48.15 E-value=8.5 Score=19.36 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCCCCEEEE-EEECC
Q ss_conf 7899999988520244533899-87255
Q gi|255764511|r 226 EELAQGLRSAEKALKAGGLLIV-VSFHS 252 (341)
Q Consensus 226 ~~L~~~L~~~~~~L~~gGrl~V-ISFHS 252 (341)
+.+...|.-+...|..||||+. +-+|+
T Consensus 331 ~~v~dll~fss~~L~~ggrlv~w~p~~~ 358 (421)
T KOG2671 331 SLVYDLLCFSSRRLVDGGRLVFWLPTIT 358 (421)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHH
T ss_conf 9975088763766302855898347412
No 209
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=47.30 E-value=23 Score=16.53 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=39.3
Q ss_pred HHHHHHHH--CCEEEEECCCHHHHHHHHHH--HHH------CCCCEEEECCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 89999974--89099980998999999998--521------48852771132788987653123324786225
Q gi|255764511|r 50 YSRSFCKM--GSNVIALDRDPFAVSCGQET--MRD------YKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 (341)
Q Consensus 50 HS~~iL~~--~~~liaiDrD~~ai~~a~~~--l~~------~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341)
-.+.+|+. ..++.-.|.||.+|+.+++. +.. ++.|++.++..--+.-+-.. .++|.++.||-
T Consensus 303 AlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~-~~fD~vIVDl~ 374 (508)
T COG4262 303 ALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA-DMFDVVIVDLP 374 (508)
T ss_pred HHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHC-CCCCEEEEECC
T ss_conf 7999971888552789743889998730026766603677668756999654788997413-45557999689
No 210
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=46.84 E-value=24 Score=16.48 Aligned_cols=84 Identities=23% Similarity=0.427 Sum_probs=48.8
Q ss_pred CCCCHHHHHHH----HH--CCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHH
Q ss_conf 68828899999----74--890999-809989999999985214885277113278898765312332478622520788
Q gi|255764511|r 45 FGAGGYSRSFC----KM--GSNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 (341)
Q Consensus 45 lG~GGHS~~iL----~~--~~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Q 117 (341)
.|.|+..+..+ +. +.+++| .|+|++......+. |+ +. .|.++++.+...++|+|+.= .-.+.|
T Consensus 6 iG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~---~~--~~----~~~~~~~~l~~~~iD~v~I~-tp~~~H 75 (120)
T pfam01408 6 VGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAES---FG--VP----AYSDLEELLADPDVDAVSVA-TPPGLH 75 (120)
T ss_pred EECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH---HC--CC----EECCHHHHHHCCCCCEEEEC-CCHHHH
T ss_conf 9077999999999985599978999982999999999998---39--96----78869999737788989990-874618
Q ss_pred HHHH----HHCCCCCCCCCEECCCC
Q ss_conf 8765----40734456641010435
Q gi|255764511|r 118 IDCG----DRGFSFQKSGPLDMRMS 138 (341)
Q Consensus 118 ld~~----~RGFSf~~dgpLDMRmd 138 (341)
.+-. ++|...--+=|+-+-++
T Consensus 76 ~~~~~~~l~~g~~v~~EKP~~~~~~ 100 (120)
T pfam01408 76 FELALAALEAGKHVLVEKPLATTVE 100 (120)
T ss_pred HHHHHHHHHHCCEEEEECCCCCCHH
T ss_conf 9999999981998999689819999
No 211
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.36 E-value=23 Score=16.59 Aligned_cols=38 Identities=21% Similarity=0.387 Sum_probs=26.5
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 376882889999974890999809989999999985214
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~ 81 (341)
+|+|. |=+..++..+-.|+-+|++++++..+.+.++.+
T Consensus 14 G~MG~-gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~ 51 (310)
T PRK06130 14 GAMGS-GIAALFASKGLDVVLIDPMPGALERAAQVIERQ 51 (310)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHH
T ss_conf 79999-999999858998899979999999999999998
No 212
>PRK06198 short chain dehydrogenase; Provisional
Probab=46.25 E-value=24 Score=16.43 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=47.4
Q ss_pred CCCCCHHH----HHHHHHCCE-EEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH---HHH-----CCCCEEEEE
Q ss_conf 76882889----999974890-99980998999999998521488527711327889876---531-----233247862
Q gi|255764511|r 44 TFGAGGYS----RSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VPD-----KGVDGVVFD 110 (341)
Q Consensus 44 TlG~GGHS----~~iL~~~~~-liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~---l~~-----~~vdgIl~D 110 (341)
|-|.+|== +.+++.+.+ |+..|+|.+..+...+.++..+.+..++..+.++.+++ +.. .++|..+-.
T Consensus 12 TGas~GIG~aiA~~la~~Ga~vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~fG~iDiLVNn 91 (268)
T PRK06198 12 TGGTQGLGAAIARLFAERGAAGLVICGRSAEKGEAKAAELEALGAKAVFVQADLAKVEDCRAVVAAADEAFGRLDALVNA 91 (268)
T ss_pred ECCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 58577899999999998799389996298889999999999549967999826899999999999999983999899989
Q ss_pred CCC
Q ss_conf 252
Q gi|255764511|r 111 LGV 113 (341)
Q Consensus 111 LGv 113 (341)
=|+
T Consensus 92 AG~ 94 (268)
T PRK06198 92 AGL 94 (268)
T ss_pred CCC
T ss_conf 978
No 213
>KOG0199 consensus
Probab=46.03 E-value=14 Score=17.87 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=45.9
Q ss_pred HHHHCCCCHHHHHHHHHHHH---HHH--CCCCCHHHHHHHHHHHHHHHHCCCCHHHHH-HHHHHHH-HH-----CCCHHH
Q ss_conf 99744630268899999999---752--124321379999998876431277125788-8888766-51-----340578
Q gi|255764511|r 160 LGILGEEKQASRIAHAIVKR---RQS--APFQTTQDLSSLIQKTVYFSKNNRIHPATR-SFQALRI-FV-----NNEIEE 227 (341)
Q Consensus 160 ~~~yGee~~a~~IA~~Iv~~---R~~--~~i~TT~eL~~iI~~~~~~~~~~k~hpatr-~FQALRI-~V-----N~El~~ 227 (341)
++.||||++-..=+-.|.+. ++. .|=-...++.++..+| ..-|||-| +|-|||- .+ --+.-+
T Consensus 308 MFtyGEePW~G~~g~qIL~~iD~~erLpRPk~csedIY~imk~c------Wah~paDRptFsair~~~~l~eaqp~~a~~ 381 (1039)
T KOG0199 308 MFTYGEEPWVGCRGIQILKNIDAGERLPRPKYCSEDIYQIMKNC------WAHNPADRPTFSAIREDLVLAEAQPAVARE 381 (1039)
T ss_pred HHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH------CCCCCCCCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 65067777788888999886010123789988759999999986------548853365288887767887427740464
Q ss_pred HHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 9999998852024453389987255
Q gi|255764511|r 228 LAQGLRSAEKALKAGGLLIVVSFHS 252 (341)
Q Consensus 228 L~~~L~~~~~~L~~gGrl~VISFHS 252 (341)
+.++...-.--++.|--++||+=-+
T Consensus 382 ~~d~~ep~aLh~~kgD~IvVIegs~ 406 (1039)
T KOG0199 382 TYDSIEPGALHLTKGDEIVVIEGSG 406 (1039)
T ss_pred ECCCCCCCCEEECCCCEEEEEECCC
T ss_conf 2156688703421598589982687
No 214
>PRK07201 short chain dehydrogenase; Provisional
Probab=45.98 E-value=24 Score=16.40 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=47.3
Q ss_pred EECCCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHH---HH----HH-CCCCEEE
Q ss_conf 9837688288999----99748909998099899999999852148852771132788987---65----31-2332478
Q gi|255764511|r 41 LDATFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YV----PD-KGVDGVV 108 (341)
Q Consensus 41 iD~TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~---~l----~~-~~vdgIl 108 (341)
+=-|-|.-|=-++ +.+.+.+|+..+|+.+.++...+.++..+.+...+....++.++ .+ .+ .++|..+
T Consensus 379 alITGASSGIG~A~A~~LA~~GA~Vvl~AR~~e~Le~v~~ei~~~Gg~a~~~~~DVtd~~~v~~lv~~i~~~~G~IDVLV 458 (663)
T PRK07201 379 VIITGASSGIGRATAIKVAEAGATVFALARDGEKLDELVAEIRARGGQAHAYTCDLTDSASVEHTVKDILGRHGHVDYLV 458 (663)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99938875999999999998799899998999999999999995599189999627999999999999999679988899
Q ss_pred EECCCH
Q ss_conf 622520
Q gi|255764511|r 109 FDLGVS 114 (341)
Q Consensus 109 ~DLGvS 114 (341)
-+=|+|
T Consensus 459 NNAG~s 464 (663)
T PRK07201 459 NNAGRS 464 (663)
T ss_pred ECCCCC
T ss_conf 896446
No 215
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=45.58 E-value=25 Score=16.36 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37688288999997489099980998999999998521
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
+|+|. |=+..++..+-.|+-+|.+++++..+.+++++
T Consensus 12 G~MG~-gIA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~ 48 (291)
T PRK06035 12 GVMGQ-GIAQVFARTGYDVTIVDVSEEILKNAMELIES 48 (291)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 68899-99999995899889998998999999999997
No 216
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=45.25 E-value=25 Score=16.33 Aligned_cols=97 Identities=18% Similarity=0.253 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-C-CCHHHHHHHHHHHHHHH--HCCCCH-HHH-------HHHHHHHH
Q ss_conf 257899899974463026889999999975212-4-32137999999887643--127712-578-------88888766
Q gi|255764511|r 152 NVKDLTRILGILGEEKQASRIAHAIVKRRQSAP-F-QTTQDLSSLIQKTVYFS--KNNRIH-PAT-------RSFQALRI 219 (341)
Q Consensus 152 s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~-i-~TT~eL~~iI~~~~~~~--~~~k~h-pat-------r~FQALRI 219 (341)
+.++|.+=+++-.+--.|...++.|+.--.... . +--..|...|+++.+-. ...-.+ |.. -++=.|--
T Consensus 91 Nr~el~kWl~~ep~afDWs~~~~~v~~lEG~~~~~~e~ee~lR~~Ik~Vl~cDV~~~~pl~~~~~lp~~D~v~S~~cLE~ 170 (261)
T pfam01234 91 NRDELIKWLKKEPGAFDWSPVLKHICELEGDRECWQEKEEKLRALVKRVLKCDVHQSPPLGAGVQLPPADCVVTIFCLEY 170 (261)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHH
T ss_conf 79999999706998666619999998622676415788899998864488765568888888666788558847622556
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 513405789999998852024453389987
Q gi|255764511|r 220 FVNNEIEELAQGLRSAEKALKAGGLLIVVS 249 (341)
Q Consensus 220 ~VN~El~~L~~~L~~~~~~L~~gGrl~VIS 249 (341)
+..+ +++-..+|.....+|+|||.|+.+.
T Consensus 171 ac~d-~~~Y~~av~ni~~LLkpGG~Lil~g 199 (261)
T pfam01234 171 ACPD-LEEYCRALRNLASLLKPGGHLVLGG 199 (261)
T ss_pred HCCC-HHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 6199-9999999999986478884699998
No 217
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=45.21 E-value=25 Score=16.32 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=4.8
Q ss_pred HCCCCEEEEECC
Q ss_conf 123324786225
Q gi|255764511|r 101 DKGVDGVVFDLG 112 (341)
Q Consensus 101 ~~~vdgIl~DLG 112 (341)
..+||||.+--|
T Consensus 189 ~lgVdgi~isp~ 200 (318)
T TIGR03470 189 DLGVDGMTISPG 200 (318)
T ss_pred HCCCCEEEECCC
T ss_conf 769973897665
No 218
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=44.90 E-value=25 Score=16.29 Aligned_cols=72 Identities=18% Similarity=0.242 Sum_probs=48.3
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH---HH----H-CCCCEEEEEC
Q ss_conf 7688288----999997489099980998999999998521488527711327889876---53----1-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY---VP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~---l~----~-~~vdgIl~DL 111 (341)
|-|.+|= ++.+.+.+.+|+..||+++.++.+.+.++..+.+..++..+..+.+.+ .. . ..+|..+-+-
T Consensus 20 TGgs~GIG~~ia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 99 (259)
T PRK06124 20 TGSARGLGLEIARALAEAGAHVLVNGRNAARVEAAVAALRAAGGAAEALVFDISDEEAVAAAFARIDAEHGRLDILVNNV 99 (259)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 28674899999999998799999996988999999999996599589999517999999999999999759997999898
Q ss_pred CCHH
Q ss_conf 5207
Q gi|255764511|r 112 GVSS 115 (341)
Q Consensus 112 GvSS 115 (341)
|+..
T Consensus 100 G~~~ 103 (259)
T PRK06124 100 GARN 103 (259)
T ss_pred CCCC
T ss_conf 8899
No 219
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=44.85 E-value=25 Score=16.29 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=49.9
Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEE
Q ss_conf 376882889----9999748909998099899999999852148852771132788---987653----1-233247862
Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~D 110 (341)
-|=|.+|== +.+.+.+.+|+..|++++.+....+.+...+.+..++..+.++ +..... . ..+|.++-+
T Consensus 15 VTGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~~~~~~~~~G~iDiLVNn 94 (278)
T PRK08277 15 ITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVEEIKANGGEAIALKADVLDKESLEQARQQILKDFGRCDILING 94 (278)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 95867489999999999879989999798899999999998459909999824899999999999999984998889988
Q ss_pred CCCHH
Q ss_conf 25207
Q gi|255764511|r 111 LGVSS 115 (341)
Q Consensus 111 LGvSS 115 (341)
-|...
T Consensus 95 AG~~~ 99 (278)
T PRK08277 95 AGGNH 99 (278)
T ss_pred CCCCC
T ss_conf 98767
No 220
>PRK11260 cystine transporter subunit; Provisional
Probab=44.75 E-value=25 Score=16.28 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=46.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 8888998376882889999974890999809989999999985214885277113278898765312332478622520
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341)
..|+..=||-+.- ---.+.+.+|++.|||.|- +-..|++ + +-++.+....|+++-.-+....+|-++..+.++
T Consensus 37 ~~G~L~Vg~~~~~-pPf~~~d~~G~~~GfdvDl-~~~ia~~-l---g~~~e~~~~~~~~~i~~L~~g~~Di~~~~~t~T 109 (264)
T PRK11260 37 ERGTLLVGLEGTY-PPFSFQGEDGKLTGFEVEF-AEALAKH-L---GVKASLKPTKWDGMLASLDSKRIDVVINQVTIS 109 (264)
T ss_pred HCCEEEEEECCCC-CCCEEECCCCCEEEEEHHH-HHHHHHH-H---CCCEEEEECCHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 6998999977898-8936899999988871999-9999998-4---995699978889999998669946672575358
No 221
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=44.66 E-value=25 Score=16.27 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHC
Q ss_conf 257888888--76651340578999999885202445338998725502389999998641
Q gi|255764511|r 208 HPATRSFQA--LRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 (341)
Q Consensus 208 hpatr~FQA--LRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~ 266 (341)
.+...-|+- +||-+|--...=...+......|.+|..+++||| |.+-+-+-...+...
T Consensus 144 ~~vA~~~~~kl~rig~~~~~~~d~~~~~~~~~~l~~~Dv~I~iS~-sG~t~~~~~~~~~Ak 203 (282)
T PRK11557 144 GLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISY-SGERRELNLAADEAL 203 (282)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHHHHHHHH
T ss_conf 999999999999809963740886899999981899998999859-999789999999999
No 222
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=44.36 E-value=26 Score=16.24 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 09868866083888889983768828899999748909998099899999999852
Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 (341)
Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341)
|++++++.+.......|||-=+|+|+-+..+.+...+++.-|.+++.+..-+..++
T Consensus 8 l~~~I~~~~p~~~~~~yvEPF~GggsV~~~~~~~~~~~~iNDin~~l~~~~~~v~~ 63 (254)
T pfam02086 8 LLPEIKEHIPKGGDRRFVEPFAGGGAVFFEAKKRGKKVLINDINYDLINLYKALIK 63 (254)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 99999985685789999983687779999764168869999688899999999996
No 223
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.05 E-value=26 Score=16.21 Aligned_cols=69 Identities=25% Similarity=0.307 Sum_probs=44.5
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC
Q ss_conf 7688288----99999748909998099899999999852148852771132788---9876531-----2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+..|+|++.++.+.+.+. +.++.++..+.++ +.+++.. .++|.++-.-
T Consensus 12 TGgs~GIG~aia~~la~~G~~V~i~~r~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lInnA 89 (250)
T PRK07231 12 TGAGSGFGEGIARRFAAEGARVVVTDRNQEAAERVAAEIR--GGRAIAVAADVSDEADVRAAVEAALERFGSVDILVNNA 89 (250)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHC--CCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 3888689999999999879999999798899999999844--99679999307999999999999999819971999888
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|++
T Consensus 90 G~~ 92 (250)
T PRK07231 90 GTT 92 (250)
T ss_pred CCC
T ss_conf 337
No 224
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=43.98 E-value=26 Score=16.20 Aligned_cols=86 Identities=16% Similarity=0.247 Sum_probs=48.2
Q ss_pred HH-HHHHHHHCC-EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCH---HHHHHHHHHCCCCEEEEECCCHHHH--HH
Q ss_conf 88-999997489-0999809989999999985214--88527711327---8898765312332478622520788--87
Q gi|255764511|r 49 GY-SRSFCKMGS-NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATF---SQLQDYVPDKGVDGVVFDLGVSSMQ--ID 119 (341)
Q Consensus 49 GH-S~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F---~~i~~~l~~~~vdgIl~DLGvSS~Q--ld 119 (341)
.| .+.+|+.++ .++.+|+|...+......+... .+++.++.+.. ..+.+.+...++|.|+-==+.+..+ .+
T Consensus 12 S~Lv~~Ll~~g~~~v~v~d~~~~~~~~~~~~l~~~~~~~~~~~~~~DI~D~~~l~~~~~~~~~D~V~HlAA~~~V~~s~~ 91 (280)
T pfam02719 12 SELCRQILKFNPKKIILFSRDEFKLYEIEQELREEYNDPKLRFFIGDVRDRERLERAMEEYGVDTVFHAAALKHVPLVEY 91 (280)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECHHHCCCCCHHH
T ss_conf 99999999689988999908874277899998862678983899811689899999987549999998103116532766
Q ss_pred HHHHCCCCCCCCCEE
Q ss_conf 654073445664101
Q gi|255764511|r 120 CGDRGFSFQKSGPLD 134 (341)
Q Consensus 120 ~~~RGFSf~~dgpLD 134 (341)
+|...+.-+-.|.+.
T Consensus 92 ~P~~~~~~Nv~gT~n 106 (280)
T pfam02719 92 NPMEAIKTNVLGTEN 106 (280)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 999999887277799
No 225
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=43.87 E-value=26 Score=16.19 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHH--HHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 8899--9997489099980998999999998521
Q gi|255764511|r 49 GYSR--SFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 49 GHS~--~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
|++- .++..+-.|+.+|.+++++..+.++...
T Consensus 15 G~~IA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~ 48 (282)
T PRK05808 15 GNGIAQVCAVAGYDVVMVDISDEAVDRGLATITK 48 (282)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 9999999995799389997998999999999999
No 226
>PRK06940 short chain dehydrogenase; Provisional
Probab=43.33 E-value=27 Score=16.14 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=47.9
Q ss_pred CCCHHHHHHH---HHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHH---HH-CCCCEEEEECCCHH
Q ss_conf 8828899999---748909998099899999999852148852771132788---98765---31-23324786225207
Q gi|255764511|r 46 GAGGYSRSFC---KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYV---PD-KGVDGVVFDLGVSS 115 (341)
Q Consensus 46 G~GGHS~~iL---~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l---~~-~~vdgIl~DLGvSS 115 (341)
|.||==++|- ..+.+|+..|++++.+..+.+.++..+.++..+..+.++ ++.+. .. .++|+++-.-|++.
T Consensus 12 Ga~GIG~aiA~~la~Ga~vvi~~~~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~l~~~~~~~G~idiLVnnAG~~~ 91 (277)
T PRK06940 12 GAGGMGQAIARRVGSGKTVLLADYNEENLQAVARTLREAGFDVITQQVDVSSRESVKALAQTAATLGAVTGLVHTAGVSP 91 (277)
T ss_pred CCCHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 81699999999998199899998988999999999872288299998257998999999999998699879998886786
No 227
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=43.14 E-value=27 Score=16.12 Aligned_cols=85 Identities=18% Similarity=0.319 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC---CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH
Q ss_conf 4009868866083888889983768828899999748---9099980998999999998521488527711327889876
Q gi|255764511|r 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 (341)
Q Consensus 22 PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~---~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~ 98 (341)
|.+-....+.+++..|--++.--=|.|=-|++||+.+ ..|+++.-+++=. ..+.+.|++ ..++++.--++..+
T Consensus 34 s~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~---~~L~~~~p~-~~ii~gda~~l~~~ 109 (194)
T COG3963 34 SILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV---CHLNQLYPG-VNIINGDAFDLRTT 109 (194)
T ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHH---HHHHHHCCC-CCCCCCCHHHHHHH
T ss_conf 79999998434844597647776986676899996579954368998277999---999975887-51305405657877
Q ss_pred HHHCC---CCEEEEE
Q ss_conf 53123---3247862
Q gi|255764511|r 99 VPDKG---VDGVVFD 110 (341)
Q Consensus 99 l~~~~---vdgIl~D 110 (341)
+.+.+ ||.|+--
T Consensus 110 l~e~~gq~~D~viS~ 124 (194)
T COG3963 110 LGEHKGQFFDSVISG 124 (194)
T ss_pred HHHCCCCEEEEEEEC
T ss_conf 865279740168865
No 228
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=42.88 E-value=27 Score=16.09 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=29.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 899837688288999997489099980998999999998521
Q gi|255764511|r 39 VILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
++==+|+|. |-+..++..+-.|..+|.++++...+.+++..
T Consensus 12 VIGaG~MG~-giAa~~a~~G~~V~l~D~~~~a~~~~~~~i~~ 52 (321)
T PRK07066 12 AIGSGVIGS-GWVARALAHGLDVVAWDPAPGAEAALRANVAN 52 (321)
T ss_pred EECCCHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 988878889-99999994798599996988899999999999
No 229
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=42.77 E-value=18 Score=17.24 Aligned_cols=18 Identities=39% Similarity=0.658 Sum_probs=8.6
Q ss_pred HHHHHHHCCCCCCEEEEE
Q ss_conf 999885202445338998
Q gi|255764511|r 231 GLRSAEKALKAGGLLIVV 248 (341)
Q Consensus 231 ~L~~~~~~L~~gGrl~VI 248 (341)
.+++|++.|..||||.|+
T Consensus 236 l~~KAyDAl~SGGR~LIL 253 (306)
T TIGR02716 236 LLKKAYDALRSGGRLLIL 253 (306)
T ss_pred HHHHHHHHCCCCCEEEEE
T ss_conf 999887522578807865
No 230
>KOG0788 consensus
Probab=42.73 E-value=7.3 Score=19.78 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=21.3
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 1340578999999885202445338998
Q gi|255764511|r 221 VNNEIEELAQGLRSAEKALKAGGLLIVV 248 (341)
Q Consensus 221 VN~El~~L~~~L~~~~~~L~~gGrl~VI 248 (341)
.|+-+..+...+.+..++.+|+--.+-+
T Consensus 260 ~~~~~~~~~~li~kvl~~F~P~kfs~t~ 287 (334)
T KOG0788 260 YDQGLLDLSELISKVLNCFKPNKFSVTV 287 (334)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 4555432999999999743867079998
No 231
>PRK07479 consensus
Probab=42.64 E-value=27 Score=16.07 Aligned_cols=72 Identities=22% Similarity=0.280 Sum_probs=49.2
Q ss_pred CCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEE
Q ss_conf 37688288----99999748909998099899999999852148852771132788---987653----1-233247862
Q gi|255764511|r 43 ATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~D 110 (341)
-|=|.+|= ++.+++.+.+|+..|++++.+....+.++..+.++.++..+.++ +..... . .++|.++-+
T Consensus 10 ITGgs~GIG~a~a~~la~~G~~V~i~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iD~lVnn 89 (252)
T PRK07479 10 VTGAGSGFGEGIAKRFAREGAKVVVADLNAAAAERVASEIADAGGNAIAVAADVSRGADVEALVEAALEAFGRVDIVVNN 89 (252)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 93887689999999999879999999798999999999998539978999925899999999999999981998599989
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
-|+.
T Consensus 90 AG~~ 93 (252)
T PRK07479 90 AGTT 93 (252)
T ss_pred CCCC
T ss_conf 9766
No 232
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=42.48 E-value=22 Score=16.70 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=18.3
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 89998622257899899974463
Q gi|255764511|r 144 ASDVVNQANVKDLTRILGILGEE 166 (341)
Q Consensus 144 A~eiln~~s~~~L~~i~~~yGee 166 (341)
-.-+||-.|---..++=+.|+..
T Consensus 197 qK~iLNmiST~~mi~lGkVy~n~ 219 (273)
T PRK05441 197 QKLVLNMISTGVMIKLGKVYGNL 219 (273)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99999999899999808612776
No 233
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase; InterPro: IPR011548 3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators . 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterised 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate . HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase. ; GO: 0008442 3-hydroxyisobutyrate dehydrogenase activity, 0051287 NAD binding.
Probab=42.04 E-value=28 Score=16.01 Aligned_cols=33 Identities=27% Similarity=0.242 Sum_probs=27.2
Q ss_pred CHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 288999997489099980998999999998521
Q gi|255764511|r 48 GGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 48 GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
|+=++-++|.+.+|..||.+|++++.+.+.-.+
T Consensus 9 gPMA~NL~KAGH~v~~FDL~p~av~~~v~aG~~ 41 (290)
T TIGR01692 9 GPMAANLLKAGHAVRVFDLSPKAVEELVEAGAQ 41 (290)
T ss_pred HHHHHHHHHHCCEEEEEECCHHHHHHHHHCCHH
T ss_conf 279999861187257751788999999960022
No 234
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=41.83 E-value=22 Score=16.65 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=13.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 89998622257899899974463
Q gi|255764511|r 144 ASDVVNQANVKDLTRILGILGEE 166 (341)
Q Consensus 144 A~eiln~~s~~~L~~i~~~yGee 166 (341)
-.-+||-.|---..++=+.|+..
T Consensus 188 qK~iLNmiST~~mi~lGkV~~n~ 210 (257)
T cd05007 188 QKLALNMLSTAVMIRLGKVYGNL 210 (257)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 99999998899999808612776
No 235
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=41.48 E-value=28 Score=15.96 Aligned_cols=102 Identities=24% Similarity=0.298 Sum_probs=72.6
Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHH-HC-CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCC
Q ss_conf 8660838888899837688288999997-48-909998099899999999852148-85277113278898765312332
Q gi|255764511|r 29 IALLNPAPGKVILDATFGAGGYSRSFCK-MG-SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVD 105 (341)
Q Consensus 29 l~~l~~~~~g~~iD~TlG~GGHS~~iL~-~~-~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vd 105 (341)
+..+..+.+..++|+.-|.|=-+.-.+. .+ .+|++=|.||+|+...+++++-.+ +++.+.+.+...+-.- ....+|
T Consensus 44 ~~~~~~~~~~~ilDalsasGiR~iRy~~E~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~v~~~dAn~lm~~-~~~~fD 122 (376)
T PRK04338 44 LKAFGPKRRKSVLDALSASGIRGIRYALETGVEKVILNDINPDAVELIKKNLELNGLENAEVFNEDANVLLHE-NERKFD 122 (376)
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH-CCCCCC
T ss_conf 9997420697687406765499999987279987999569999999999999982998269813248999983-787587
Q ss_pred EEEEE-CCCHHHHHHHHHHCCCCCCCCCE
Q ss_conf 47862-25207888765407344566410
Q gi|255764511|r 106 GVVFD-LGVSSMQIDCGDRGFSFQKSGPL 133 (341)
Q Consensus 106 gIl~D-LGvSS~Qld~~~RGFSf~~dgpL 133 (341)
.|=+| .|-.++-||.+-+.- +.+|-|
T Consensus 123 ~IDlDPfGSp~pflDsAi~~v--~~~GlL 149 (376)
T PRK04338 123 VVDIDPFGSPAPFLDSAIRAL--RRGGLL 149 (376)
T ss_pred EEEECCCCCCCHHHHHHHHHH--HCCCEE
T ss_conf 786789999208799999984--039889
No 236
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=41.39 E-value=27 Score=16.11 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=26.9
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 887665134057899999988520244533899872
Q gi|255764511|r 215 QALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 (341)
Q Consensus 215 QALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISF 250 (341)
|..-|.-|++| |..++.+|..+|+++|.+.|-.+
T Consensus 93 ~~~~i~~nr~L--l~~Ff~sa~~~l~~~G~i~vTl~ 126 (166)
T pfam10354 93 SDRNIRLNREL--LRGFFKNASELLKPGGEIHVTLK 126 (166)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 25558999999--99999999998279989999953
No 237
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.25 E-value=29 Score=15.93 Aligned_cols=38 Identities=18% Similarity=0.335 Sum_probs=27.7
Q ss_pred ECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 837688288999997489099980998999999998521
Q gi|255764511|r 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 42 D~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
-+|+|. |=+..+...+-.|+.+|.+++++..+.++++.
T Consensus 11 aGtMG~-gIA~~~a~aG~~V~l~D~~~~~l~~a~~~i~~ 48 (503)
T PRK08268 11 AGAMGA-GIAQVAAQAGHTVLLYDARAGAAAAARDGIAA 48 (503)
T ss_pred CCHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 688999-99999993899089997998999999999999
No 238
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=41.18 E-value=29 Score=15.93 Aligned_cols=64 Identities=11% Similarity=0.176 Sum_probs=46.3
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEECCCH
Q ss_conf 99999748909998099899999999852148852771132788---987653----1-2332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~DLGvS 114 (341)
++++++.+.+|+..|++++..+.+.+.++..+.+..++..+.++ +...+. . .++|.++-+-|+.
T Consensus 26 A~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDilVnNAG~~ 97 (254)
T PRK08085 26 ATGLAEYGAEIIINDITAERAEKAVAKLRQEGIKAHAAAFNVTHKQEIEAAIEHIEKDIGPIDVLINNAGIQ 97 (254)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 999998699999996988999999999984498189998268999999999999999839986999898678
No 239
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=40.36 E-value=21 Score=16.85 Aligned_cols=32 Identities=6% Similarity=-0.081 Sum_probs=14.4
Q ss_pred ECCCHHHHHHHHHHHHHC---CCCEEEECCCHHHH
Q ss_conf 809989999999985214---88527711327889
Q gi|255764511|r 64 LDRDPFAVSCGQETMRDY---KEQFSLFQATFSQL 95 (341)
Q Consensus 64 iDrD~~ai~~a~~~l~~~---~~r~~~~~~~F~~i 95 (341)
..+|.++|+.+-++|=.. .+++.+.-++---+
T Consensus 500 ~~~d~E~~~~~~~~li~~a~~lNK~Vv~tG~~hy~ 534 (1264)
T TIGR01405 500 QVKDKEALKEIIKKLIKLAKELNKPVVATGDVHYI 534 (1264)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 78777789999999999998619779996784217
No 240
>KOG2198 consensus
Probab=40.27 E-value=30 Score=15.84 Aligned_cols=84 Identities=21% Similarity=0.244 Sum_probs=50.8
Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHC------CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH-----HHH--H
Q ss_conf 6083888889983768828899999748------90999809989999999985214885277113278-----898--7
Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS-----QLQ--D 97 (341)
Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~------~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~-----~i~--~ 97 (341)
+|..+|+..++|+----||-|.++|+.. |.|+|=|.|+.-+..-..-+ .+-+.-.+...|++ ++. +
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~-~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQL-KRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHH-HCCCCCCEEEECCCCEECCCCCCCC
T ss_conf 022679984442013898448999999723777773675345788999999998-5269843334312110056410146
Q ss_pred H--HHHCCCCEEEEECCCHH
Q ss_conf 6--53123324786225207
Q gi|255764511|r 98 Y--VPDKGVDGVVFDLGVSS 115 (341)
Q Consensus 98 ~--l~~~~vdgIl~DLGvSS 115 (341)
- .....+|-||.|.=.|.
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~ 248 (375)
T KOG2198 229 GNDKEQLKFDRVLVDVPCSG 248 (375)
T ss_pred CCHHHHHHCCEEEEECCCCC
T ss_conf 76033441253687145689
No 241
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain; InterPro: IPR005976 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=39.05 E-value=17 Score=17.40 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=33.5
Q ss_pred EEEE-CCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC
Q ss_conf 2771-132788987653123324786225207888765407
Q gi|255764511|r 85 FSLF-QATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 (341)
Q Consensus 85 ~~~~-~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RG 124 (341)
|.-| -+|+..++.+|...+|++-|+ +=.|.|||.|.=|
T Consensus 232 FdTYCiGN~R~~Kr~L~~mGv~~~~L--~D~~~~LDsP~dG 270 (526)
T TIGR01286 232 FDTYCIGNVREIKRILSLMGVEYTLL--SDAEESLDSPADG 270 (526)
T ss_pred CCCCEECCHHHHHHHHHHHCCCCEEE--CCCHHHCCCCCCC
T ss_conf 67511165688978998728983030--4655436798888
No 242
>TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS; InterPro: IPR012761 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the clade of sigma factors called RpoS (also called sigma-38, KatF, etc.), found only in proteobacteria. This sigma factor is induced in stationary phase (in response to the stress of nutrient limitation) and becomes the second principal sigma factor at that time.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=39.00 E-value=8.8 Score=19.24 Aligned_cols=11 Identities=36% Similarity=0.649 Sum_probs=6.6
Q ss_pred HHHHCCCCCCC
Q ss_conf 65407344566
Q gi|255764511|r 120 CGDRGFSFQKS 130 (341)
Q Consensus 120 ~~~RGFSf~~d 130 (341)
||+|||-|..=
T Consensus 92 DPeRGFRFSTY 102 (292)
T TIGR02394 92 DPERGFRFSTY 102 (292)
T ss_pred CCCCCCCCCCH
T ss_conf 88999844301
No 243
>pfam08343 RNR_N Ribonucleotide reductase N-terminal. This domain is found at the N-terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides. It occurs together with the RNR all-alpha domain (pfam00317) and the RNR barrel domain (pfam02867).
Probab=39.00 E-value=9.6 Score=19.01 Aligned_cols=10 Identities=40% Similarity=0.527 Sum_probs=5.5
Q ss_pred EECCCHHHHH
Q ss_conf 9809989999
Q gi|255764511|r 63 ALDRDPFAVS 72 (341)
Q Consensus 63 aiDrD~~ai~ 72 (341)
-+|.|.+|+.
T Consensus 18 ql~kDkeA~~ 27 (82)
T pfam08343 18 QLDKDKEALE 27 (82)
T ss_pred CCHHHHHHHH
T ss_conf 5321799999
No 244
>PRK05650 short chain dehydrogenase; Provisional
Probab=38.98 E-value=31 Score=15.71 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHH-----CCCCEEEEECCCHHH
Q ss_conf 999974890999809989999999985214885277113278---89876531-----233247862252078
Q gi|255764511|r 52 RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVPD-----KGVDGVVFDLGVSSM 116 (341)
Q Consensus 52 ~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~---~i~~~l~~-----~~vdgIl~DLGvSS~ 116 (341)
+.+.+.+.+|+..|++++.+....+.+...+.+..++..+.+ ++...... ..+|-++-+=|++..
T Consensus 18 ~~la~~G~~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~~~~~~~~v~~~~g~iDiLVNNAGi~~~ 90 (270)
T PRK05650 18 LRWAREGWRLALADVNEEGGEETLKELREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAGVASG 90 (270)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 9999889989999798899999999998449928999845899999999999999983997789624766799
No 245
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific; InterPro: IPR005852 Phosphoglucomutase, alpha-D-glucose phosphate-specific () links the anaerobic or aerobic glycolysis of glucose-6-phosphate and glucose-1-phosphate produced by various glycan phosphorylases by catalysing the transfer of a phosphate group between C-1 and C-6 of glucose . Alpha-D-glucose 1-phosphate = alpha-D-glucose 6-phosphate.; GO: 0004614 phosphoglucomutase activity, 0005975 carbohydrate metabolic process.
Probab=38.63 E-value=12 Score=18.33 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=22.4
Q ss_pred EECCCCCCHHHH---HHHHHCCEEEEECCCHHHHH-HHHHHHHHC
Q ss_conf 983768828899---99974890999809989999-999985214
Q gi|255764511|r 41 LDATFGAGGYSR---SFCKMGSNVIALDRDPFAVS-CGQETMRDY 81 (341)
Q Consensus 41 iD~TlG~GGHS~---~iL~~~~~liaiDrD~~ai~-~a~~~l~~~ 81 (341)
+|++||.||-=. .||++.|.+-.=|+|---+. .|.|.+..-
T Consensus 390 ~~g~fGFGGEESAGASFLr~dGt~W~TDKDGiIm~LLAAEItAvT 434 (553)
T TIGR01132 390 LDGSFGFGGEESAGASFLRKDGTVWTTDKDGIIMCLLAAEITAVT 434 (553)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 047557674012200323047580244640799999998898651
No 246
>PRK06482 short chain dehydrogenase; Provisional
Probab=38.00 E-value=32 Score=15.61 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=38.8
Q ss_pred EEE-CCCCCCHH--HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEE
Q ss_conf 998-37688288--99999748909998099899999999852148852771132788---9876531-----2332478
Q gi|255764511|r 40 ILD-ATFGAGGY--SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVV 108 (341)
Q Consensus 40 ~iD-~TlG~GGH--S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl 108 (341)
+|- |+=|- |. ++.+++.+.+|++.+|+++.+.... ..+++++..+....++ +...+.. ..+|.++
T Consensus 6 lITGaSsGi-G~ala~~l~~~G~~Vi~t~R~~~~l~~l~---~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDvLV 81 (276)
T PRK06482 6 FITGASSGF-GRGLTERLLARGDRVAATVRRPDALDDLK---ARYGERLWVLQLDVTDTAAVRAVVDRAFAELGRIDVVV 81 (276)
T ss_pred EEECCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 991586599-99999999988998999978989999999---86699579999537999999999999999809987887
Q ss_pred EECCCH
Q ss_conf 622520
Q gi|255764511|r 109 FDLGVS 114 (341)
Q Consensus 109 ~DLGvS 114 (341)
-+-|++
T Consensus 82 NNAG~~ 87 (276)
T PRK06482 82 SNAGYG 87 (276)
T ss_pred ECCCCC
T ss_conf 468777
No 247
>COG3649 CRISPR system related protein [Defense mechanisms]
Probab=37.90 E-value=19 Score=17.03 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=8.6
Q ss_pred HHCCCCCCCCCEECCCCC
Q ss_conf 407344566410104355
Q gi|255764511|r 122 DRGFSFQKSGPLDMRMSC 139 (341)
Q Consensus 122 ~RGFSf~~dgpLDMRmd~ 139 (341)
..|.|--.-||.-.||.+
T Consensus 115 kk~ms~gvrGPVsi~~at 132 (283)
T COG3649 115 KKGMSSGVRGPVSIRYAT 132 (283)
T ss_pred CCCCCCCCCCCEEEEEEC
T ss_conf 568622345635897304
No 248
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=37.84 E-value=32 Score=15.60 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 5789999998852024453389987255
Q gi|255764511|r 225 IEELAQGLRSAEKALKAGGLLIVVSFHS 252 (341)
Q Consensus 225 l~~L~~~L~~~~~~L~~gGrl~VISFHS 252 (341)
++..+.++....+.|.++-|+.|++|.+
T Consensus 18 l~~~k~a~~~~~~~L~~~d~v~iV~F~~ 45 (155)
T cd01466 18 LQLVKHALRFVISSLGDADRLSIVTFST 45 (155)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 9999999999998489767489999568
No 249
>PRK07660 consensus
Probab=37.35 E-value=33 Score=15.55 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 37688288999997489099980998999999998521
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
+|+|. |=+..+...+-+|+-+|.+++++..+.+++..
T Consensus 12 G~MG~-gIA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~ 48 (283)
T PRK07660 12 GQMGS-GIAQVCAMAGYDVKVQDLKQEQLDRGLAIITK 48 (283)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 98999-99999996698189997988999999999999
No 250
>PRK06922 hypothetical protein; Provisional
Probab=37.32 E-value=33 Score=15.54 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHCCCCCCEEEE
Q ss_conf 899999988520244533899
Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIV 247 (341)
Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~V 247 (341)
.++.+|.+++.+|+||||+.|
T Consensus 517 vi~~~l~Saf~vLkpGGRiII 537 (679)
T PRK06922 517 VIKKGLQSAYEVLKPGGRIII 537 (679)
T ss_pred HHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999987288864999
No 251
>PRK08862 short chain dehydrogenase; Provisional
Probab=36.75 E-value=34 Score=15.49 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=37.4
Q ss_pred CCCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 3768828899----999748909998099899999999852148852771132788
Q gi|255764511|r 43 ATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341)
Q Consensus 43 ~TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341)
-|-|++|==+ .+.+.+.+|+..|||++.+..+.+.+..++.++..+....++
T Consensus 10 ITGas~GIG~aiA~~~A~~Ga~Vii~~r~~~~l~~~~~~i~~~g~~~~~~~~d~~~ 65 (227)
T PRK08862 10 ITSAGSVLGRTISCHFARLGATLILCDQDQSALNDTYEQCSALTDNVYSYQLKDFS 65 (227)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 97988799999999999879999999699999999999999758974899951661
No 252
>PRK09117 consensus
Probab=35.81 E-value=35 Score=15.39 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=22.8
Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 8899999748909998099899999999852
Q gi|255764511|r 49 GYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 (341)
Q Consensus 49 GHS~~iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341)
|=+..++..+-.|+-+|++++++..+.++..
T Consensus 16 ~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~ 46 (282)
T PRK09117 16 GIAQACAVAGLDVVMVDISDAAVQRGLATVA 46 (282)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 9999999679968999898899999999999
No 253
>PRK06500 short chain dehydrogenase; Provisional
Probab=35.45 E-value=35 Score=15.35 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=40.0
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEEECCC
Q ss_conf 9999974890999809989999999985214885277113278898---7653----1-233247862252
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVFDLGV 113 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~DLGv 113 (341)
++.+++.+.+|+..|||++.+..+.+.+ +.++..+..+-++.. +... . .++|..+-+-|+
T Consensus 23 A~~la~~Ga~V~i~~r~~~~l~~~~~~l---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDiLvnnAG~ 90 (249)
T PRK06500 23 ARQFAAEGARVAITGRDAATLEAARAEL---GEDALVIRNDAGSVAAQRALAQALAEAGGRLDAVFINAGV 90 (249)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9999987999999969989999999985---8975999951799999999999999976999899989987
No 254
>PRK07063 short chain dehydrogenase; Provisional
Probab=35.33 E-value=35 Score=15.34 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=47.9
Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHH-HHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEE
Q ss_conf 376882889----999974890999809989999999985-2148852771132788---9876531-----23324786
Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVF 109 (341)
Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l-~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~ 109 (341)
-|-|.+|== +.+++.+.+|+..|++++....+.+.+ ++++.+..++..+.++ +...+.. .++|.++-
T Consensus 12 VTGa~~GIG~aiA~~~a~~Ga~V~i~~~~~~~~~~~~~~l~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVN 91 (259)
T PRK07063 12 VTGAAQGIGAAIARAFVREGAAVALADLDAALAERAAAAIARQTGARVLALPADVTRAASVRAAVARAEAAFGPLDVLVN 91 (259)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 95878789999999999879989999798789999999998850991899983689999999999999998199889998
Q ss_pred ECCCH
Q ss_conf 22520
Q gi|255764511|r 110 DLGVS 114 (341)
Q Consensus 110 DLGvS 114 (341)
+-|++
T Consensus 92 NAG~~ 96 (259)
T PRK07063 92 NAGIN 96 (259)
T ss_pred CCCCC
T ss_conf 99778
No 255
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=34.87 E-value=36 Score=15.32 Aligned_cols=75 Identities=24% Similarity=0.306 Sum_probs=53.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHH----HCC-CCEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 88899837688288999997489--09998099899999999852----148-852771132788987653123324786
Q gi|255764511|r 37 GKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMR----DYK-EQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341)
Q Consensus 37 ~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~----~~~-~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341)
...++|.=-|.|=-|+++.+.++ .++++|.=+.++..|++... ... ..+.|+.++...+. +.... +- +
T Consensus 37 ~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~~~~~~f~~gD~E~l~--~~~~~--~~-~ 111 (272)
T TIGR02072 37 PASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGWWQKNLKAVQFICGDIEKLP--LEDSS--FK-F 111 (272)
T ss_pred CCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC--CCCCC--CE-E
T ss_conf 5435651268548999999868800123333256789999974467886576045666663777178--87663--03-4
Q ss_pred ECCCHHH
Q ss_conf 2252078
Q gi|255764511|r 110 DLGVSSM 116 (341)
Q Consensus 110 DLGvSS~ 116 (341)
||=||++
T Consensus 112 DLI~Sn~ 118 (272)
T TIGR02072 112 DLIVSNL 118 (272)
T ss_pred EHHHHHH
T ss_conf 1275635
No 256
>PRK06172 short chain dehydrogenase; Provisional
Probab=34.76 E-value=36 Score=15.28 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEE
Q ss_conf 376882889----9999748909998099899999999852148852771132788---987653----1-233247862
Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~D 110 (341)
-|-|.+|== +.+.+.+.+|+..|++++..+.+.+.+++.+.+..++....++ +...+. . .++|.++-+
T Consensus 12 VTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVNN 91 (253)
T PRK06172 12 VTGGAAGIGRATAIAFAREGAKVVVADRDAAGGEETVALIREAGGEALFIACDVTRDAEVKALVEKTIAAYGRLDYAFNN 91 (253)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 93757689999999999879989999798899999999999649937999818999999999999999982999999989
Q ss_pred CCC
Q ss_conf 252
Q gi|255764511|r 111 LGV 113 (341)
Q Consensus 111 LGv 113 (341)
-|+
T Consensus 92 AGi 94 (253)
T PRK06172 92 AGI 94 (253)
T ss_pred CCC
T ss_conf 888
No 257
>PRK07035 short chain dehydrogenase; Provisional
Probab=34.76 E-value=36 Score=15.28 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=46.8
Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH---HHHHHHHHH-----CCCCEEEEE
Q ss_conf 376882889----99997489099980998999999998521488527711327---889876531-----233247862
Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF---SQLQDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F---~~i~~~l~~-----~~vdgIl~D 110 (341)
-|=|.+|== +.+++.+.+|+..|++.+.++...+.+.+.+.+...+..+. +++...... .++|.++-+
T Consensus 13 ITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn 92 (252)
T PRK07035 13 VTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAQIRERHGRLDILVNN 92 (252)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 95887499999999999879989999798899999999999649957999824899999999999999982997789876
Q ss_pred CCC
Q ss_conf 252
Q gi|255764511|r 111 LGV 113 (341)
Q Consensus 111 LGv 113 (341)
-|.
T Consensus 93 Ag~ 95 (252)
T PRK07035 93 AAA 95 (252)
T ss_pred CCC
T ss_conf 855
No 258
>KOG4238 consensus
Probab=34.74 E-value=36 Score=15.28 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=17.2
Q ss_pred CEEEECCCCCCHHHHHH-HH----HCC-EEEEECCCHHH
Q ss_conf 88998376882889999-97----489-09998099899
Q gi|255764511|r 38 KVILDATFGAGGYSRSF-CK----MGS-NVIALDRDPFA 70 (341)
Q Consensus 38 g~~iD~TlG~GGHS~~i-L~----~~~-~liaiDrD~~a 70 (341)
-+|+-+--|+|--|-.+ |+ ..| --|++|-|-.-
T Consensus 52 tvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnir 90 (627)
T KOG4238 52 TVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIR 90 (627)
T ss_pred EEEEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 587430477885242078999998659851034760266
No 259
>pfam06263 consensus
Probab=34.20 E-value=30 Score=15.83 Aligned_cols=21 Identities=14% Similarity=-0.069 Sum_probs=8.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCC
Q ss_conf 607833400986886608388
Q gi|255764511|r 16 TIGDHVPVLLEKVIALLNPAP 36 (341)
Q Consensus 16 ~~~~H~PVll~Evl~~l~~~~ 36 (341)
...+|.+|-|--+-.-++-.+
T Consensus 8 ~~~Y~DSV~LM~is~~l~~~~ 28 (514)
T pfam06263 8 KNTYQDSVSLMLISNKLSALD 28 (514)
T ss_pred CCCCCHHHHHHHHHHHHHCCC
T ss_conf 686311599999999875289
No 260
>PRK07774 short chain dehydrogenase; Provisional
Probab=33.80 E-value=37 Score=15.19 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHH----HHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEE
Q ss_conf 376882889999----9748909998099899999999852148852771132788---9876531-----233247862
Q gi|255764511|r 43 ATFGAGGYSRSF----CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS~~i----L~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~D 110 (341)
-|-|.+|=-+++ ++.+.+|+..|++++..+...+.++..+.+...+..+.++ +.+.... .++|.++-+
T Consensus 11 VTGgs~GiG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~fG~iDilVNn 90 (250)
T PRK07774 11 VTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADRTVSAFGGIDYLVNN 90 (250)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 97976889999999999869999999798899999999998559849999825899999999999999983999899988
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
=|+.
T Consensus 91 Ag~~ 94 (250)
T PRK07774 91 AAIY 94 (250)
T ss_pred CCCC
T ss_conf 8435
No 261
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=33.70 E-value=38 Score=15.17 Aligned_cols=117 Identities=15% Similarity=0.232 Sum_probs=57.1
Q ss_pred EEECCCCCCHHHH--HHH-----HHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEC------CCHHHHHHHHHHCCCC
Q ss_conf 9983768828899--999-----74890999809989999999985214-88527711------3278898765312332
Q gi|255764511|r 40 ILDATFGAGGYSR--SFC-----KMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQ------ATFSQLQDYVPDKGVD 105 (341)
Q Consensus 40 ~iD~TlG~GGHS~--~iL-----~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~------~~F~~i~~~l~~~~vd 105 (341)
+|..-=|+=|-|. .+| .+...++++|-||.--..+. .+.. -.++.+.. .+|+.|-+.+.+..-|
T Consensus 6 ~vlqgKGGVGKS~va~~LaQY~~~~~~~~~~iDTDpvN~tf~~--ykal~v~~i~I~e~~~i~~r~FD~l~E~i~~~~~~ 83 (241)
T PRK13886 6 MVLQGKGGVGKSMIAATIAQYKAGKGQKPLCIDTDPVNATFEG--YKALNVRRLNIMDGDEINTRNFDALVEMIASTEGD 83 (241)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHH--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9855888630999999999999835999855608999705342--14367557775238865666668999998568998
Q ss_pred EEEEECCCHHHHH----HHHHHCCCCCCCCCEECCCCC---CCCCHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 4786225207888----765407344566410104355---6841899986222578998999744
Q gi|255764511|r 106 GVVFDLGVSSMQI----DCGDRGFSFQKSGPLDMRMSC---SGISASDVVNQANVKDLTRILGILG 164 (341)
Q Consensus 106 gIl~DLGvSS~Ql----d~~~RGFSf~~dgpLDMRmd~---~~~tA~eiln~~s~~~L~~i~~~yG 164 (341)
++.|+|-||+.= =...-=|.+..+.-.++.+.. .|+.-.|-++. |..++-.|+
T Consensus 84 -~VID~GAstfvPL~~Yl~eN~v~~ll~e~G~~v~iH~vi~GGqa~~DT~~g-----l~~l~~~~~ 143 (241)
T PRK13886 84 -VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGGQALLDTVSG-----FAQLASQFP 143 (241)
T ss_pred -EEEECCHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEEECCCCCHHHHHHH-----HHHHHHHCC
T ss_conf -899885176778999998788699999779739999984598427789999-----999998658
No 262
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=33.68 E-value=38 Score=15.17 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH
Q ss_conf 3768828899999748909998099899999999852
Q gi|255764511|r 43 ATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 (341)
Q Consensus 43 ~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341)
+|+|. |=+..++..+-.|.-+|++++++..+.+++.
T Consensus 13 G~MG~-giA~~~a~~G~~V~l~D~~~e~~~~~~~~i~ 48 (292)
T PRK07530 13 GQMGN-GIAHVCALAGYDVLLNDVSADRLESGMATIN 48 (292)
T ss_pred CHHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 69999-9999999679968999798899999999999
No 263
>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=33.67 E-value=38 Score=15.17 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 688999999997521243213799999
Q gi|255764511|r 169 ASRIAHAIVKRRQSAPFQTTQDLSSLI 195 (341)
Q Consensus 169 a~~IA~~Iv~~R~~~~i~TT~eL~~iI 195 (341)
-+|...+|+.+|+++||++-.|+.+-|
T Consensus 139 GkK~m~~IleERkkkpFeSFeDi~~Rv 165 (202)
T COG1491 139 GKKTMWAILEERKKKPFESFEDIKERV 165 (202)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 499999999987428886689999880
No 264
>TIGR02743 TraW type-F conjugative transfer system protein TraW; InterPro: IPR014114 This entry represents TraW, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm , ..
Probab=33.21 E-value=38 Score=15.12 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=39.5
Q ss_pred CEEEEEC-CCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9099980-99899999999852148--852771132788987653123324786225
Q gi|255764511|r 59 SNVIALD-RDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 (341)
Q Consensus 59 ~~liaiD-rD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341)
..|+=|| +||+=+..|+..+..+. .++.+..+...++.+.+.. -|+||+.
T Consensus 135 ~~LlFfDAdD~~Q~~wA~~~~~~~~G~~K~ILt~Gs~~el~~~L~~----~IYFDQ~ 187 (217)
T TIGR02743 135 KTLLFFDADDPKQLAWAQQLLAQLPGEVKWILTGGSVKELEKRLDS----RIYFDQN 187 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHCCC----CCEECCC
T ss_conf 6178881888899999998732038983088717897999985289----6046367
No 265
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=33.20 E-value=38 Score=15.12 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHCCCCC--C--E-EEECCCCCCHHHHHHHH--HC-------CEEEEECCCHHHHHHHHH
Q ss_conf 8334009868866083888--8--8-99837688288999997--48-------909998099899999999
Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPG--K--V-ILDATFGAGGYSRSFCK--MG-------SNVIALDRDPFAVSCGQE 76 (341)
Q Consensus 19 ~H~PVll~Evl~~l~~~~~--g--~-~iD~TlG~GGHS~~iL~--~~-------~~liaiDrD~~ai~~a~~ 76 (341)
.|.+++-++++..|..... - + -.-|--|.=-+|.||+= .. -+++|.|.|..++..|+.
T Consensus 76 ~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 76 EHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHC
T ss_conf 899999999879987304698539996676899558999999998733225874389999799999999862
No 266
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.13 E-value=38 Score=15.12 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 7899999988520244533899
Q gi|255764511|r 226 EELAQGLRSAEKALKAGGLLIV 247 (341)
Q Consensus 226 ~~L~~~L~~~~~~L~~gGrl~V 247 (341)
++...+|+-+..+|+|||.|-|
T Consensus 63 ~Eg~~alkechr~Lrp~G~Lri 84 (185)
T COG4627 63 DEGTSALKECHRFLRPGGKLRI 84 (185)
T ss_pred HHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9889999999997086758999
No 267
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=32.98 E-value=27 Score=16.08 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=4.4
Q ss_pred CCCCEEEEEEEC
Q ss_conf 445338998725
Q gi|255764511|r 240 KAGGLLIVVSFH 251 (341)
Q Consensus 240 ~~gGrl~VISFH 251 (341)
+.+|.-+|+|||
T Consensus 132 ~~~~~~vI~S~H 143 (253)
T PRK02412 132 HEHGVKVVLSYH 143 (253)
T ss_pred HHCCCEEEEEEC
T ss_conf 866998999854
No 268
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=32.85 E-value=18 Score=17.18 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=20.4
Q ss_pred CCCCEEEECCCCCCHHHHH--------HHH---HCCEEEEECCCHHHHH
Q ss_conf 8888899837688288999--------997---4890999809989999
Q gi|255764511|r 35 APGKVILDATFGAGGYSRS--------FCK---MGSNVIALDRDPFAVS 72 (341)
Q Consensus 35 ~~~g~~iD~TlG~GGHS~~--------iL~---~~~~liaiDrD~~ai~ 72 (341)
+.++++.|+|-=.--.-.. .+. ..++|+-+-+.|+...
T Consensus 79 ~~~~~v~da~~~~~~~~l~~~~~~~~~~~r~l~~~~rvvv~g~~p~~~~ 127 (447)
T PRK08261 79 KFGALVFDATGITDPEELKQLYEFFHPLLRNLAPCGRVVVLGRPPETAA 127 (447)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHCC
T ss_conf 6336999777899989999999999999873377760899437802237
No 269
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase; InterPro: IPR016063 The prediction that proteins in this entry are cysteinyl-tRNA synthetases is supported by but challenged by . The proteins from Deinococcus radiodurans and Methanococcus jannaschii, species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The protein from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as putative alpha-1,4 polygalactosaminidases..
Probab=32.68 E-value=26 Score=16.18 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHC
Q ss_conf 2788987653123324786225207888765407
Q gi|255764511|r 91 TFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 (341)
Q Consensus 91 ~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RG 124 (341)
-|+.|+.++.+ ||+||.+|+ |-++|.- ++-|
T Consensus 155 ~fsyLDrvI~Q-GF~GvYlD~-iD~feyw-A~~G 185 (325)
T TIGR01370 155 VFSYLDRVIAQ-GFDGVYLDK-IDAFEYW-AEEG 185 (325)
T ss_pred HHHHHHHHHHC-CCCEEEECC-CHHHHHH-HHCC
T ss_conf 99974367552-787244044-2146888-7547
No 270
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=32.55 E-value=39 Score=15.05 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=13.1
Q ss_pred CCEEEEEEECCCHHHHHHHHHH
Q ss_conf 5338998725502389999998
Q gi|255764511|r 242 GGLLIVVSFHSLEDRLVKKFFA 263 (341)
Q Consensus 242 gGrl~VISFHSLEDRiVK~ff~ 263 (341)
+-|++..|=++|++.+-+..|+
T Consensus 273 d~RiIaat~~~L~~~v~~g~Fr 294 (469)
T PRK10923 273 DVRIIAATHQNLEQRVQEGKFR 294 (469)
T ss_pred CCEEEEECCCCHHHHHHHCCHH
T ss_conf 4379970787999986608177
No 271
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=31.98 E-value=40 Score=15.00 Aligned_cols=39 Identities=31% Similarity=0.422 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECC-CHHHHHHHHHHHHCC
Q ss_conf 89999998852024453389987255-023899999986417
Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHS-LEDRLVKKFFASRSG 267 (341)
Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHS-LEDRiVK~ff~~~~~ 267 (341)
++..+|..|..+|+|||.|-|.---| .+| ++.|.+..+.
T Consensus 131 N~~~fi~EA~RvLk~~G~L~IAEV~SRf~~--~~~Fv~~~~~ 170 (214)
T pfam05148 131 NIADFLKEANRILKNGGLLKIAEVRSRFPS--VGLFERAFTK 170 (214)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEEEECCCCC--HHHHHHHHHH
T ss_conf 779999998760310878999997401689--8999999997
No 272
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=31.96 E-value=40 Score=14.99 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=71.8
Q ss_pred ECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC--------------CCCEEEECCC----------------
Q ss_conf 8376882889999974890999809989999999985214--------------8852771132----------------
Q gi|255764511|r 42 DATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--------------KEQFSLFQAT---------------- 91 (341)
Q Consensus 42 D~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--------------~~r~~~~~~~---------------- 91 (341)
=+|.|. |-+..++..+-.|..+|.||+|.....+.+... ..++.+..+-
T Consensus 10 AGvMGs-GwAa~FA~aG~~V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dADlVqEaVPE 88 (489)
T PRK07531 10 GGVIGG-GWAARFLLNGWDVAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGADWIQESVPE 88 (489)
T ss_pred CCHHHH-HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCCCEEEECCCC
T ss_conf 188689-9999999579969999488789999999999999987753203556467768638899997479999987856
Q ss_pred --------HHHHHHHHHHCCCCEEEEE----CCCHHHH--HHHHHHCCCCCC-CCCEECCCC---CCCCCHHHHHHHCCH
Q ss_conf --------7889876531233247862----2520788--876540734456-641010435---568418999862225
Q gi|255764511|r 92 --------FSQLQDYVPDKGVDGVVFD----LGVSSMQ--IDCGDRGFSFQK-SGPLDMRMS---CSGISASDVVNQANV 153 (341)
Q Consensus 92 --------F~~i~~~l~~~~vdgIl~D----LGvSS~Q--ld~~~RGFSf~~-dgpLDMRmd---~~~~tA~eiln~~s~ 153 (341)
|++++.+++ -+.||+- |-+|-+| +..|+|=+--.. |-|-=|..= +...|..+.++.
T Consensus 89 ~LdIKq~vf~eLd~~~~---~~aIiASsTSgl~~S~l~~~~~~peR~iv~HpfNPp~L~PLVEvV~g~~T~~~~v~~--- 162 (489)
T PRK07531 89 RLDLKHKVLAEIEAAAR---PDALIGSSTSGFKPSELQEGMTHPERIFVAHPFNPVYLLPLVELVGGGKTSPETIER--- 162 (489)
T ss_pred CHHHHHHHHHHHHHHCC---CCCEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEECCCCCCHHHHHH---
T ss_conf 69999999999997679---983898536658899998655895506884346873447627981688889999999---
Q ss_pred HHHHHHHHHHCCCCH----------HHHHHHHHHHHH---HHCCCCCHHHHHHHHHHH
Q ss_conf 789989997446302----------688999999997---521243213799999988
Q gi|255764511|r 154 KDLTRILGILGEEKQ----------ASRIAHAIVKRR---QSAPFQTTQDLSSLIQKT 198 (341)
Q Consensus 154 ~~L~~i~~~yGee~~----------a~~IA~~Iv~~R---~~~~i~TT~eL~~iI~~~ 198 (341)
...++..-|-.+- +-|+..|+..+- -+.-+-||.|+-++|...
T Consensus 163 --a~~~~~~iG~~Pv~v~kEi~Gfi~nRLq~Al~rEAl~Lv~~Giat~ediD~ai~~g 218 (489)
T PRK07531 163 --AKEILREIGMKPVHIAKEIDAHVGDRLLEAVWREALWLVKDGIATTEEIDDAIRYG 218 (489)
T ss_pred --HHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf --99999982984369700007778888999999999999877976789887999818
No 273
>KOG4300 consensus
Probab=31.54 E-value=41 Score=14.95 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=14.8
Q ss_pred HHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHH
Q ss_conf 9999885202445338998725502389999998
Q gi|255764511|r 230 QGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFA 263 (341)
Q Consensus 230 ~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~ 263 (341)
+.|...-++|+||||+..|----.|+.-.-.+.+
T Consensus 163 k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q 196 (252)
T KOG4300 163 KQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ 196 (252)
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 9999988750889589997212442108999999
No 274
>PRK08017 short chain dehydrogenase; Provisional
Probab=31.41 E-value=41 Score=14.93 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=17.3
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHH
Q ss_conf 999997489099980998999999
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCG 74 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a 74 (341)
++.+++.+.+|++.+|+++.+...
T Consensus 19 A~~la~~G~~V~~~~r~~~~l~~~ 42 (256)
T PRK08017 19 ALELKRQGFRVLAGCRKPDDVARM 42 (256)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 999998799999996998999999
No 275
>pfam08660 Alg14 Oligosaccharide biosynthesis protein Alg14 like. Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane.
Probab=31.22 E-value=41 Score=14.91 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHH-------CC--EEEEECCCHHHHHHHHH
Q ss_conf 6882889999974-------89--09998099899999999
Q gi|255764511|r 45 FGAGGYSRSFCKM-------GS--NVIALDRDPFAVSCGQE 76 (341)
Q Consensus 45 lG~GGHS~~iL~~-------~~--~liaiDrD~~ai~~a~~ 76 (341)
+|.|||+..+|.. +. ..+.-+.|..+....++
T Consensus 5 ~GSGGHt~eml~L~~~l~~~~~~~~yvv~~~D~~s~~~~~~ 45 (166)
T pfam08660 5 LGSGGHTAEMLRLLPFLKNLEDPRRYVVTETDKDSLSKASK 45 (166)
T ss_pred EECHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHH
T ss_conf 94827899999999987756897389998898078999886
No 276
>pfam04811 Sec23_trunk Sec23/Sec24 trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface.
Probab=31.05 E-value=41 Score=14.90 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHCCC---CCCEEEEEEECC
Q ss_conf 89999998852024---453389987255
Q gi|255764511|r 227 ELAQGLRSAEKALK---AGGLLIVVSFHS 252 (341)
Q Consensus 227 ~L~~~L~~~~~~L~---~gGrl~VISFHS 252 (341)
++-.+|..|..+|+ -|||+.+ |.|
T Consensus 115 ~~G~Al~~A~~lL~~~~~GGkI~~--F~s 141 (241)
T pfam04811 115 CLGPALQAAVLLLKAAFTGGKIML--FQG 141 (241)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEE--EEC
T ss_conf 248999999999851689976999--947
No 277
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=30.97 E-value=42 Score=14.89 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 6302688999999997521243213799999988
Q gi|255764511|r 165 EEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 (341)
Q Consensus 165 ee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~ 198 (341)
+.++..+.-+.|++.| |.+|..|+++|.++
T Consensus 70 ~rrWt~~~K~~i~~SR----i~~T~~L~e~I~~~ 99 (297)
T COG1090 70 ERRWTEKQKEEIRQSR----INTTEKLVELIAAS 99 (297)
T ss_pred CCCCCHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_conf 4657889999999977----68999999999852
No 278
>pfam07279 DUF1442 Protein of unknown function (DUF1442). This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=30.88 E-value=42 Score=14.88 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=58.5
Q ss_pred HHHHHHHHCCC-CCCEEEECCCCCCH--HHHHHHH----HCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCC-HHH
Q ss_conf 98688660838-88889983768828--8999997----48909998099899999999852148--852771132-788
Q gi|255764511|r 25 LEKVIALLNPA-PGKVILDATFGAGG--YSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQAT-FSQ 94 (341)
Q Consensus 25 l~Evl~~l~~~-~~g~~iD~TlG~GG--HS~~iL~----~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~-F~~ 94 (341)
+.|.|+.|.-- +....|.++-+++. -|-++-- -+|++++|=.|.+++..+.+.+..+. +...|+.++ ...
T Consensus 29 vaEfiSAlAAG~nAkLiVe~~s~~~~~~tsiaLaaAA~~TgGR~VCIlp~~~~~~~~~~~m~~~~~~~~~EfvvG~~~e~ 108 (218)
T pfam07279 29 AAELLAAMAAGWNARLIVETWSEGDPIATSVGLNVASRHTNGRHICIVPNERSQSAYLQAMREQSTSNLPETIVGEELEH 108 (218)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHH
T ss_conf 89999998576664599997137885025899999987439828998388266999999851245345537996573888
Q ss_pred HHHHHHHCCCCEEEEEC
Q ss_conf 98765312332478622
Q gi|255764511|r 95 LQDYVPDKGVDGVVFDL 111 (341)
Q Consensus 95 i~~~l~~~~vdgIl~DL 111 (341)
+-+- ..++|+.+.|+
T Consensus 109 ~m~~--~~~vDF~vVDc 123 (218)
T pfam07279 109 TMET--LQGVDFLVVDW 123 (218)
T ss_pred HHHH--CCCCCEEEEEC
T ss_conf 9732--55787899844
No 279
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=30.36 E-value=43 Score=14.82 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=21.0
Q ss_pred HHCCCCCCEEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 52024453389987255023899999986417
Q gi|255764511|r 236 EKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 (341)
Q Consensus 236 ~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~~ 267 (341)
...+.+|..+++|| ||.+-+-+-+..+....
T Consensus 170 a~~~~~~Dvvi~iS-~sG~t~e~i~~~~~Ak~ 200 (284)
T PRK11302 170 CMNSSDGDVVVLIS-HTGRTKSLVELAQLARE 200 (284)
T ss_pred HHHCCCCCEEEEEC-CCCCCHHHHHHHHHHHH
T ss_conf 97199988899973-79998799999999998
No 280
>pfam01418 HTH_6 Helix-turn-helix domain, rpiR family. This domain contains a helix-turn-helix motif. The best characterized member of this family is RpiR, a regulator of the expression of rpiB gene.
Probab=30.35 E-value=43 Score=14.82 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 9989997446302-68899999999752124321379999998----876431277125788888876651340578
Q gi|255764511|r 156 LTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLSSLIQK----TVYFSKNNRIHPATRSFQALRIFVNNEIEE 227 (341)
Q Consensus 156 L~~i~~~yGee~~-a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~----~~~~~~~~k~hpatr~FQALRI~VN~El~~ 227 (341)
|.+|-..|.+... -++||+-|......-...|..+|++-..- .+++.++-+. +-|+.+|+.+-+|+..
T Consensus 4 l~rI~~~~~~lt~~e~~ia~yil~~~~~~~~~si~~lA~~~~vS~atv~Rf~kklG~----~Gf~efk~~La~~~~~ 76 (106)
T pfam01418 4 LEKIQSLYSKLTKSEKKIADYILASPDNAIHLSIAELAKAAGVSEASVVRFCRKLGF----SGFSDLKVALAGELAQ 76 (106)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCC----CCHHHHHHHHHHHHCC
T ss_conf 999999897649999999999992999998833999998969989999999999589----9899999999998653
No 281
>KOG2078 consensus
Probab=29.88 E-value=43 Score=14.77 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=47.7
Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC---CCCEEEECCCHHH
Q ss_conf 86886608388888998376882889999974890999809989999999985214---8852771132788
Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQATFSQ 94 (341)
Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~---~~r~~~~~~~F~~ 94 (341)
.|-++. --++|.++-|.--|-|--+.-..+++++|+|.|.-|+++++-+..+..- +.++.+++..-..
T Consensus 240 herlsg-~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078 240 HERLSG-LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred HHHHHH-CCCCCCHHHHHHCCCCCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHEEEECCCHHH
T ss_conf 888760-15874133444047674335022258589934799789999997565366561363664461888
No 282
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.82 E-value=43 Score=14.76 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=19.0
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 4189998622257899899974463
Q gi|255764511|r 142 ISASDVVNQANVKDLTRILGILGEE 166 (341)
Q Consensus 142 ~tA~eiln~~s~~~L~~i~~~yGee 166 (341)
..-.-+||-.|-.-..++=+.|+..
T Consensus 195 TAqK~vLNmiST~~mi~lGkVy~n~ 219 (296)
T PRK12570 195 TAQKMVLNMLSTASMIRLGKSYQNL 219 (296)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 6999999998899999818201776
No 283
>PRK08251 short chain dehydrogenase; Provisional
Probab=29.24 E-value=44 Score=14.70 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=43.9
Q ss_pred CCCCCCHH-HHHHHHHCCEEEEECCCHHHHHHHHHHH-HHC-CCCEEEECCCHHH---HHHHH----HH-CCCCEEEEEC
Q ss_conf 37688288-9999974890999809989999999985-214-8852771132788---98765----31-2332478622
Q gi|255764511|r 43 ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETM-RDY-KEQFSLFQATFSQ---LQDYV----PD-KGVDGVVFDL 111 (341)
Q Consensus 43 ~TlG~GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l-~~~-~~r~~~~~~~F~~---i~~~l----~~-~~vdgIl~DL 111 (341)
|+=|-|-. ++.+.+.+.+|+..+|+++.++...+.+ +.+ +.++.++....++ +.+.. .+ .++|.++.+-
T Consensus 10 AssGIG~alA~~la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvsd~~~v~~~~~~~~~~~g~iD~lvnNA 89 (248)
T PRK08251 10 ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFSDELGGLDRVIVNA 89 (248)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 86399999999999879989999898889999999998737997399997867868999999999999809998999857
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|+.
T Consensus 90 Gi~ 92 (248)
T PRK08251 90 GIG 92 (248)
T ss_pred CCC
T ss_conf 657
No 284
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=29.05 E-value=45 Score=14.68 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=26.1
Q ss_pred CCCEEEECCCCCCHHH-HHHHHH-CCEEEEECCCHH
Q ss_conf 8888998376882889-999974-890999809989
Q gi|255764511|r 36 PGKVILDATFGAGGYS-RSFCKM-GSNVIALDRDPF 69 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS-~~iL~~-~~~liaiDrD~~ 69 (341)
+-.+.|||-.|.||.. ..+|+. +..++.+-.+|+
T Consensus 174 ~lkVvvD~~nGa~~~~~~~ll~~lg~~v~~i~~~pd 209 (445)
T PRK10887 174 ELKIVVDCANGATYHIAPNVLRELGATVIAIGCEPN 209 (445)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 998999899887999999999986990999614668
No 285
>PRK07776 consensus
Probab=28.91 E-value=45 Score=14.66 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=42.6
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC
Q ss_conf 7688288----99999748909998099899999999852148852771132788---9876531-----2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341)
|-|.+|= ++.+++.+.+|+..|++++.+..+.+.+.. ++...+..+.++ +.+.+.. .++|.++-+-
T Consensus 14 TG~~~GIG~aiA~~la~~Ga~V~i~~~~~~~l~~~~~~l~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilVnNA 91 (252)
T PRK07776 14 TGASRGIGLAIAQALAAAGANVVITARKQEALDEAAAQLGA--ERALGVAGHAVDEEHAREAVDLTLERFGSVDILVNNA 91 (252)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 47787999999999998799899997988999999998479--9579999742899999999999999849986999878
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|++
T Consensus 92 g~~ 94 (252)
T PRK07776 92 GTN 94 (252)
T ss_pred CCC
T ss_conf 668
No 286
>TIGR02796 tolQ protein TolQ; InterPro: IPR014163 TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses proton motive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this entry describes TolQ specifically, as found in tol-pal operons. A close homologue, excluded from this entry, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species..
Probab=28.89 E-value=26 Score=16.24 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7888888766513405789999998852
Q gi|255764511|r 210 ATRSFQALRIFVNNEIEELAQGLRSAEK 237 (341)
Q Consensus 210 atr~FQALRI~VN~El~~L~~~L~~~~~ 237 (341)
..++=-|+|+.+|+|++.|+..|.-.-.
T Consensus 104 ~~~~~Ram~~~~~rE~~~Le~~L~fLAT 131 (219)
T TIGR02796 104 IERIDRAMRVALNRELEKLESGLPFLAT 131 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 9999999999999999988614650322
No 287
>PRK06841 short chain dehydrogenase; Provisional
Probab=28.77 E-value=45 Score=14.65 Aligned_cols=69 Identities=23% Similarity=0.248 Sum_probs=40.3
Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEE
Q ss_conf 376882889----9999748909998099899999999852148852771132788---9876531-----233247862
Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~D 110 (341)
-|-|.+|== +.+++.+.+|+..|+|++..+.+.+. .+.+...+..+.++ +...+.. ..+|.++-+
T Consensus 20 VTGas~GIG~aiA~~la~~Ga~V~i~d~~~~~~~~~~~~---~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~g~iDiLVNN 96 (255)
T PRK06841 20 VTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQL---LGGNAKGLVCDVSDSQSVEAAVAAAISAFGRIDILVNS 96 (255)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 979677899999999998799999996987899999984---59966999984699999999999999981998799989
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
-|+.
T Consensus 97 AGi~ 100 (255)
T PRK06841 97 AGVA 100 (255)
T ss_pred CCCC
T ss_conf 9789
No 288
>KOG1060 consensus
Probab=28.73 E-value=43 Score=14.79 Aligned_cols=110 Identities=21% Similarity=0.273 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHH-HCCCCEEEECCCHHHHHHHHHHC---C-CCEEEEECCCHHHHHHHH--------HHCCCCCC--
Q ss_conf 099899999999852-14885277113278898765312---3-324786225207888765--------40734456--
Q gi|255764511|r 65 DRDPFAVSCGQETMR-DYKEQFSLFQATFSQLQDYVPDK---G-VDGVVFDLGVSSMQIDCG--------DRGFSFQK-- 129 (341)
Q Consensus 65 DrD~~ai~~a~~~l~-~~~~r~~~~~~~F~~i~~~l~~~---~-vdgIl~DLGvSS~Qld~~--------~RGFSf~~-- 129 (341)
|++|-.+-.|--.++ -+++|+.++|.||..+..++++. + |=-|=.=.-|.-+||-+| .+|||-+.
T Consensus 191 D~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~ 270 (968)
T KOG1060 191 DRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKD 270 (968)
T ss_pred CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89973114789999876615788866779999762034666407789999999998607996324210246765566643
Q ss_pred -----CCCEECCCCCCCCCHHHHHHH----------CCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf -----641010435568418999862----------22578998999744630268899999999
Q gi|255764511|r 130 -----SGPLDMRMSCSGISASDVVNQ----------ANVKDLTRILGILGEEKQASRIAHAIVKR 179 (341)
Q Consensus 130 -----dgpLDMRmd~~~~tA~eiln~----------~s~~~L~~i~~~yGee~~a~~IA~~Iv~~ 179 (341)
.+|.- ||+ +-..+|++ .-.-.-+++||.-.--....+||++.+.-
T Consensus 271 ~~~~~~~P~~--~d~---D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrL 330 (968)
T KOG1060 271 KYNEIRTPYV--NDP---DLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRL 330 (968)
T ss_pred CCCCCCCCCC--CCC---CHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 3455678866--681---09999974528773177299999986788408787877899999999
No 289
>pfam04919 DUF655 Protein of unknown function, DUF655. This family includes several uncharacterized archaeal proteins.
Probab=28.65 E-value=45 Score=14.63 Aligned_cols=27 Identities=22% Similarity=0.569 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 688999999997521243213799999
Q gi|255764511|r 169 ASRIAHAIVKRRQSAPFQTTQDLSSLI 195 (341)
Q Consensus 169 a~~IA~~Iv~~R~~~~i~TT~eL~~iI 195 (341)
-++.+..|+.+|+++||++=.|+.+-|
T Consensus 125 GkK~~~~ileeR~~~~FeSFedi~~Rv 151 (181)
T pfam04919 125 GKKMMWAILEERKKKPFESFEDIKERV 151 (181)
T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 389999999996559988999999883
No 290
>PRK06194 hypothetical protein; Provisional
Probab=28.24 E-value=46 Score=14.59 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHH----H-CCCCEEEEE
Q ss_conf 3768828899----99974890999809989999999985214885277113278---8987653----1-233247862
Q gi|255764511|r 43 ATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVP----D-KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~---~i~~~l~----~-~~vdgIl~D 110 (341)
-|-|++|=-. .+.+.+.+|+..|++++++..+.+.+...+.++..+...-+ .+..+.. . ..+|.++-+
T Consensus 11 ITGassGIG~a~A~~la~~Ga~Vvl~d~~~~~l~~~~~~l~~~g~~v~~~~~DVsd~~~v~~l~~~~~~~fG~iDiLVNN 90 (301)
T PRK06194 11 ITGAASGFGREFARIGARLGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVHLLFNN 90 (301)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 92737799999999999879989999798899999999998459849999656899999999999999983993799955
Q ss_pred CCCHH
Q ss_conf 25207
Q gi|255764511|r 111 LGVSS 115 (341)
Q Consensus 111 LGvSS 115 (341)
=|+..
T Consensus 91 AGi~~ 95 (301)
T PRK06194 91 AGVGA 95 (301)
T ss_pred CCCCC
T ss_conf 76678
No 291
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=28.12 E-value=35 Score=15.34 Aligned_cols=37 Identities=27% Similarity=0.243 Sum_probs=22.5
Q ss_pred CCCCCHHHHHH---HHH--CCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 76882889999---974--89099980998999999998521
Q gi|255764511|r 44 TFGAGGYSRSF---CKM--GSNVIALDRDPFAVSCGQETMRD 80 (341)
Q Consensus 44 TlG~GGHS~~i---L~~--~~~liaiDrD~~ai~~a~~~l~~ 80 (341)
|=|+||=..-+ +.+ +-.|||====||+....+++-..
T Consensus 157 iGgAGGVGSI~iQLAR~LT~ltVIaTASRpEs~~Wv~~LGAH 198 (338)
T TIGR02817 157 IGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAH 198 (338)
T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCC
T ss_conf 738851789999999985496499972857899999973991
No 292
>PRK06720 hypothetical protein; Provisional
Probab=27.89 E-value=47 Score=14.55 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEE
Q ss_conf 37688288999----99748909998099899999999852148852771132788---987653----1-233247862
Q gi|255764511|r 43 ATFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~D 110 (341)
-|-|++|==++ +.+.+.+|+..|+|++..+...+.++..+.+..++..+-++ +...+. . ..+|..+-+
T Consensus 21 ITGa~~GIG~a~A~~la~~Ga~Vvi~d~~~~~~~~~~~~i~~~g~~a~~~~~Dvs~~~~v~~~i~~~~~~~g~iDiLvNN 100 (169)
T PRK06720 21 VTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRIDMLFQN 100 (169)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 98975489999999999869989995276365999999999749953789758899999999999999975989989989
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
=|+.
T Consensus 101 AGI~ 104 (169)
T PRK06720 101 AGLY 104 (169)
T ss_pred CCCC
T ss_conf 4217
No 293
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=27.81 E-value=47 Score=14.54 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEC---CCHHHHHHHHHHCCCCEEEEECCCH
Q ss_conf 999997489099980998999999998521488527711---3278898765312332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ---ATFSQLQDYVPDKGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~---~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341)
.+.+++.+.+|+++++++........ .....++. .+...+.+++...++|.|+-=-|.+
T Consensus 15 ~~~L~~~g~~v~~~~r~~~~~~~~~~-----~~~~~~~~~dl~~~~~~~~~~~~~~~D~VihlAa~~ 76 (235)
T pfam01370 15 VRRLLQEGYEVIVLGRRRRSESLNTG-----RIRFRFHEGDLTDPDALERLLAEVQPDAVIHLAAQS 76 (235)
T ss_pred HHHHHHCCCEEEEEECCCCHHHHHHC-----CCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999787989999899730122211-----467659996588999999998538998999897747
No 294
>cd00754 MoaD MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=27.59 E-value=37 Score=15.22 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 32137999999887643127712578888887665134057899999988520244533899872
Q gi|255764511|r 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 (341)
Q Consensus 186 ~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISF 250 (341)
.|..+|.+.+....+. . .....+-++|+||+|+-..+ ..|++|--+|++--
T Consensus 26 ~Tv~~L~~~L~~~~~~-----~--~~~~~~~~~iavN~~~~~~~-------~~l~~gdEva~~PP 76 (80)
T cd00754 26 ATVGELLDALEARYPG-----L--LEELLARVRIAVNGEYVRLD-------TPLKDGDEVAIIPP 76 (80)
T ss_pred CCHHHHHHHHHHHCCH-----H--HHHHHHCEEEEECCEECCCC-------CCCCCCCEEEEECC
T ss_conf 8899999999987817-----6--76431040998887983677-------15699999999799
No 295
>PRK08177 short chain dehydrogenase; Provisional
Probab=27.50 E-value=48 Score=14.50 Aligned_cols=62 Identities=18% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH---HHCCCCEEEEECCCH
Q ss_conf 9999974890999809989999999985214885277113278898765---312332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV---PDKGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l---~~~~vdgIl~DLGvS 114 (341)
++.+++.+.+|++.+|+++.....++..... -..+--.+-+.++.+. ....+|.++.+-|+.
T Consensus 18 a~~l~~~G~~V~~~~R~~~~~~~~~~~~~~~--~~~~D~~~~~~i~~~~~~~~~~~iDvlinNAGi~ 82 (225)
T PRK08177 18 VDRLLERGWQVTATVRGPQQDTALQALPGVH--IERLDMNDPASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHCCCCC--EEEEECCCHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 9999988699999979887789987254872--8998458889999999996067788899878436
No 296
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=27.29 E-value=48 Score=14.48 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=23.4
Q ss_pred CCCEEEECCCCCCHH-HHHHHHH-CCEEEEECCCH
Q ss_conf 888899837688288-9999974-89099980998
Q gi|255764511|r 36 PGKVILDATFGAGGY-SRSFCKM-GSNVIALDRDP 68 (341)
Q Consensus 36 ~~g~~iD~TlG~GGH-S~~iL~~-~~~liaiDrD~ 68 (341)
+-.+++||-.|.|++ ...+|+. +..++.+-.++
T Consensus 168 ~~kVvvD~~nGa~~~~~~~il~~lg~~v~~i~~~~ 202 (441)
T cd05805 168 GLKVVIDYAYGVAGIVLPGLLSRLGCDVVILNARL 202 (441)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 97899989997478899999998298279952567
No 297
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=27.26 E-value=48 Score=14.48 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=33.7
Q ss_pred EEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC---CCCEEEECC
Q ss_conf 8998376882889999974---890999809989999999985214---885277113
Q gi|255764511|r 39 VILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQA 90 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~---~~r~~~~~~ 90 (341)
..+|--.|+ ..=..+|.. +=+.+|.|.|++|+..|++..+.. .+++.+.+.
T Consensus 68 ~gLDIGtGA-scIYPLLg~~~y~W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q 124 (254)
T pfam05971 68 RALDIGTGA-NCIYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQ 124 (254)
T ss_pred EEEEECCCH-HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEEC
T ss_conf 677733664-157775404004863797627989999999999858332311699963
No 298
>PRK07576 short chain dehydrogenase; Provisional
Probab=27.25 E-value=48 Score=14.48 Aligned_cols=69 Identities=16% Similarity=0.184 Sum_probs=45.3
Q ss_pred CCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC
Q ss_conf 768828899----999748909998099899999999852148852771132788---9876531-----2332478622
Q gi|255764511|r 44 TFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341)
|-|.+|=-+ .+.+.+.+|+..||+++.+..+.+.+++.+.+..++..+.++ +++.+.. .++|.++-.-
T Consensus 14 TGgs~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iDiLVnnA 93 (260)
T PRK07576 14 VGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEALGVSADVRDYAAVEAAFAAIADEFGPIDVLVSGA 93 (260)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 58961999999999998799999997988999999999995399489999318999999999999999849998999898
Q ss_pred C
Q ss_conf 5
Q gi|255764511|r 112 G 112 (341)
Q Consensus 112 G 112 (341)
|
T Consensus 94 g 94 (260)
T PRK07576 94 A 94 (260)
T ss_pred C
T ss_conf 6
No 299
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=26.83 E-value=49 Score=14.43 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=33.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECC
Q ss_conf 8888998376882889999974890999809989999999985214-885277113
Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQA 90 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~ 90 (341)
..+++-|.--|.|=-|----++..+|||+.+||.--..|.+.+.-- .+++..+.+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~g 87 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVG 87 (252)
T ss_pred HHHCEEECCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 64105634688632889887532027887418078777650577788764689805
No 300
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=26.56 E-value=49 Score=14.40 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCCHH-HHHHHHHCC---EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHH
Q ss_conf 88288-999997489---09998099899999999852148852771132788987
Q gi|255764511|r 46 GAGGY-SRSFCKMGS---NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 (341)
Q Consensus 46 G~GGH-S~~iL~~~~---~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~ 97 (341)
|.|=| ++++-++-+ +|.||...++||..|++--+.-| +-+-+|.-+|.
T Consensus 250 GFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lG----l~~~~F~aLDs 301 (386)
T TIGR02085 250 GFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILG----LENLSFAALDS 301 (386)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_conf 12789989876415897044313437789999999998735----33210454457
No 301
>pfam01367 5_3_exonuc 5'-3' exonuclease, C-terminal SAM fold.
Probab=26.17 E-value=50 Score=14.35 Aligned_cols=51 Identities=12% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 418999862225789989997446302688999999997521243213799999988
Q gi|255764511|r 142 ISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 (341)
Q Consensus 142 ~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~ 198 (341)
.||+.+|++|. .|..|+....+.+ .++...|...++. +....+|+.|...+
T Consensus 29 KtA~~Ll~~~g--sle~i~~n~d~i~--~k~~~~l~~~~~~--~~lsr~L~tL~~dv 79 (100)
T pfam01367 29 KTAAKLLKEYG--SLENIYENLDKLK--GKLREKLLNGKED--AFLSRKLATIKTDV 79 (100)
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHCC--HHHHHHHHHHHHH--HHHHHHHHHHHCCC
T ss_conf 68999999819--8999998198717--9999999978999--99999871511489
No 302
>KOG2651 consensus
Probab=25.87 E-value=51 Score=14.32 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=36.4
Q ss_pred HHHHHHHHHCCCC-CCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHH
Q ss_conf 0986886608388-888998376882889999974--890999809989999999985
Q gi|255764511|r 24 LLEKVIALLNPAP-GKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETM 78 (341)
Q Consensus 24 ll~Evl~~l~~~~-~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l 78 (341)
-+.|+++.+..-. -..+||--.|. ||-..+|.. +-.|+|||-+..+..+|+..-
T Consensus 140 ~lselvSsi~~f~gi~~vvD~GaG~-G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651 140 RLSELVSSISDFTGIDQVVDVGAGQ-GHLSRFLSLGYGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred HHHHHHHHHHHHCCCCHHHCCCCCC-CHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 9999999887651871141157773-28999986426816999646368899999899
No 303
>KOG2985 consensus
Probab=25.81 E-value=28 Score=15.95 Aligned_cols=31 Identities=23% Similarity=0.196 Sum_probs=23.7
Q ss_pred EECCCCCCHHHHHHHHHCCEE-EEECCCHHHH
Q ss_conf 983768828899999748909-9980998999
Q gi|255764511|r 41 LDATFGAGGYSRSFCKMGSNV-IALDRDPFAV 71 (341)
Q Consensus 41 iD~TlG~GGHS~~iL~~~~~l-iaiDrD~~ai 71 (341)
+-.-.|+.||+.+||+-.+.+ +++|-|+.+-
T Consensus 8 ~~mp~~~~~h~r~fl~t~~~~~~~~d~ds~~s 39 (306)
T KOG2985 8 VRMPANNRVHSRAFLQTHGIWQSAIDYDSYAS 39 (306)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 55665205777765304773244202578887
No 304
>PRK05872 short chain dehydrogenase; Provisional
Probab=25.09 E-value=53 Score=14.23 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=43.0
Q ss_pred CCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH---HHHHHHHHH-----CCCCEEEEEC
Q ss_conf 76882889----99997489099980998999999998521488527711327---889876531-----2332478622
Q gi|255764511|r 44 TFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF---SQLQDYVPD-----KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F---~~i~~~l~~-----~~vdgIl~DL 111 (341)
|-|.+|=- +.+.+.+.+|+..|+|++.++...+.+ +++...+..+. +.++..+.. .++|.++.+=
T Consensus 15 TGassGIG~aiA~~la~~Ga~Vvl~dr~~~~l~~~~~~l---g~~~~~~~~DVtd~~~v~~~v~~i~~~~G~iDiLVnNA 91 (296)
T PRK05872 15 TGAARGVGAELARRLHARGAKVALVDLEEAELAALAAEL---GDRVLTVVADVTDLAAMQAAAEEAVERFGGIDVVVANA 91 (296)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 271058999999999987998999989999999999983---88738999827999999999999999719987876556
Q ss_pred CCH
Q ss_conf 520
Q gi|255764511|r 112 GVS 114 (341)
Q Consensus 112 GvS 114 (341)
|++
T Consensus 92 Gi~ 94 (296)
T PRK05872 92 GIA 94 (296)
T ss_pred CCC
T ss_conf 257
No 305
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=24.79 E-value=53 Score=14.19 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=94.8
Q ss_pred HHHHH--HHHHCCEEEEECCCHHHHHHHHHHHHH-C---------CCCEEEECCCHHHHHHHHH----HCCCCEEEEECC
Q ss_conf 88999--997489099980998999999998521-4---------8852771132788987653----123324786225
Q gi|255764511|r 49 GYSRS--FCKMGSNVIALDRDPFAVSCGQETMRD-Y---------KEQFSLFQATFSQLQDYVP----DKGVDGVVFDLG 112 (341)
Q Consensus 49 GHS~~--iL~~~~~liaiDrD~~ai~~a~~~l~~-~---------~~r~~~~~~~F~~i~~~l~----~~~vdgIl~DLG 112 (341)
|=|.+ +-+.+.+|+|+|+|++.+..|.++--- . ...+.++...-+.+.+++. ..+-+.++-|.|
T Consensus 13 GgSla~al~~~~~~V~g~d~~~~~~~~A~~~g~id~~~~~~~~~~~aDliila~Pv~~~~~~~~~~~~~l~~~~iitDv~ 92 (280)
T PRK07417 13 GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEELIPALPPEAIVTDVG 92 (280)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEECCCHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 99999999968997999979999999999869975202787460579989987974778999999986478984899652
Q ss_pred CHHHHHHHHHHCC--CCCCCCCEECCCCCCCCCHH--HHH----------HHCCH---HHHHHHHHHHCCC--------C
Q ss_conf 2078887654073--44566410104355684189--998----------62225---7899899974463--------0
Q gi|255764511|r 113 VSSMQIDCGDRGF--SFQKSGPLDMRMSCSGISAS--DVV----------NQANV---KDLTRILGILGEE--------K 167 (341)
Q Consensus 113 vSS~Qld~~~RGF--Sf~~dgpLDMRmd~~~~tA~--eil----------n~~s~---~~L~~i~~~yGee--------~ 167 (341)
=.=..+-+.-++. .|-...|.==+ ..+|+.++ ++. ...+. +.+.+++..-|=. .
T Consensus 93 SvK~~i~~~~~~~~~~fVg~HPMAGs-E~sG~~~a~~dLF~~~~~il~p~~~~~~~~~~~~~~l~~~lGa~~~~m~~~eH 171 (280)
T PRK07417 93 SVKEPIVEAWEKLHPRFVGSHPMAGT-AESGVEAGQRGLFKNRPWVLTPTENTDLAALATVEELAVSLGSKIYTADPAEH 171 (280)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCH
T ss_conf 23078999998607986236980768-88771203466750753998568889999999999999984999999998576
Q ss_pred H---------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHH-HHCCCCHHH--HHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 2---------688999999997521243213799999988-764-312771257--888888766513405789999998
Q gi|255764511|r 168 Q---------ASRIAHAIVKRRQSAPFQTTQDLSSLIQKT-VYF-SKNNRIHPA--TRSFQALRIFVNNEIEELAQGLRS 234 (341)
Q Consensus 168 ~---------a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~-~~~-~~~~k~hpa--tr~FQALRI~VN~El~~L~~~L~~ 234 (341)
+ ..-+|-+.+..-....-....+++.-+... .+- .|=....|. +-.|+.=|=+|.+.|+.+..-|..
T Consensus 172 D~~~A~~SHLPHlla~al~~~~~~~~~~~~~~~~~~la~gGfrD~TRIA~s~p~mW~dI~~~N~~~i~~~l~~~~~~L~~ 251 (280)
T PRK07417 172 DRAVALISHLPVMVSAALIQACGTEKDPSVLKLAQKLASSGFADTSRVGGGNPELGVMMAEYNRAALLRSLASYRWSLDQ 251 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCEECCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 69999998799999999999986045746788999874120433000037997999999997889999999999999999
Q ss_pred HHHCCCCCC
Q ss_conf 852024453
Q gi|255764511|r 235 AEKALKAGG 243 (341)
Q Consensus 235 ~~~~L~~gG 243 (341)
..+.|..+-
T Consensus 252 l~~~l~~~D 260 (280)
T PRK07417 252 LEEAILQEN 260 (280)
T ss_pred HHHHHHHCC
T ss_conf 999998079
No 306
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=24.74 E-value=42 Score=14.87 Aligned_cols=33 Identities=30% Similarity=0.548 Sum_probs=15.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHCCCCCC--CCCEEC
Q ss_conf 332478622520788876540734456--641010
Q gi|255764511|r 103 GVDGVVFDLGVSSMQIDCGDRGFSFQK--SGPLDM 135 (341)
Q Consensus 103 ~vdgIl~DLGvSS~Qld~~~RGFSf~~--dgpLDM 135 (341)
|-|||..==|-=+||+--+-==|.|+. .+|.=.
T Consensus 142 G~~GVVvaHGTDTM~YTAaALSFm~~~Gl~~PvVl 176 (413)
T TIGR02153 142 GADGVVVAHGTDTMAYTAAALSFMFKTGLPVPVVL 176 (413)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 99538994158746899999999997169998899
No 307
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.50 E-value=54 Score=14.15 Aligned_cols=62 Identities=10% Similarity=0.105 Sum_probs=43.1
Q ss_pred CCEEEECCCCCCHHHHHHHH--HCCEEEEECCCHHHHHHHHHHHH----HCCCCEEEECCCHHHHHHH
Q ss_conf 88899837688288999997--48909998099899999999852----1488527711327889876
Q gi|255764511|r 37 GKVILDATFGAGGYSRSFCK--MGSNVIALDRDPFAVSCGQETMR----DYKEQFSLFQATFSQLQDY 98 (341)
Q Consensus 37 ~g~~iD~TlG~GGHS~~iL~--~~~~liaiDrD~~ai~~a~~~l~----~~~~r~~~~~~~F~~i~~~ 98 (341)
.-+++=--+|.|-|.+++|+ ...+++-|+.|.+.+..+-..+- --.+|+.+.+....+++..
T Consensus 68 yp~l~~yG~GnG~~ik~Ll~~~~~k~ivVfE~d~evi~~~~~~~d~s~~l~~~Rl~l~~~~~~~~~~~ 135 (594)
T COG2604 68 YPVLVIYGLGNGELIKALLNNKNLKHIVVFEPDIEVIKVALKLLDFSEELQNYRLILLHLSEENLDLQ 135 (594)
T ss_pred CCEEEEEECCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHH
T ss_conf 86599971484899999962666455999877144999999888899987217389970553338889
No 308
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.26 E-value=55 Score=14.13 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=46.6
Q ss_pred CCCCCCHHHH----HHHHHCCEEEEECCC-HHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H-CCCCEEEE
Q ss_conf 3768828899----999748909998099-89999999985214885277113278898---7653----1-23324786
Q gi|255764511|r 43 ATFGAGGYSR----SFCKMGSNVIALDRD-PFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D-KGVDGVVF 109 (341)
Q Consensus 43 ~TlG~GGHS~----~iL~~~~~liaiDrD-~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~-~~vdgIl~ 109 (341)
-|-|.+|=-+ .+++.+.+|+..|+. ......+.+.++.++.++.++..+.++.+ +.+. . .++|.++-
T Consensus 10 ITGgs~GIG~aia~~la~~G~~Vii~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlt~~~~v~~~~~~~~~~~g~iD~lin 89 (248)
T PRK05557 10 VTGASRGIGRAIAERLAAQGANVVLNYASSEAGAEALVAEIGALGGKALAVQGDVADAESIERAVDEAKAEFGGVDILVN 89 (248)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 94897689999999999879989999698565899999999963995899990389999999999999998299719998
Q ss_pred ECCCH
Q ss_conf 22520
Q gi|255764511|r 110 DLGVS 114 (341)
Q Consensus 110 DLGvS 114 (341)
.-|+.
T Consensus 90 nAg~~ 94 (248)
T PRK05557 90 NAGIT 94 (248)
T ss_pred CCCCC
T ss_conf 99779
No 309
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=24.25 E-value=55 Score=14.12 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=43.0
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEEC
Q ss_conf 7688288----99999748909998099899999999852148852771132788---987653----1-2332478622
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFDL 111 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~DL 111 (341)
|=|.+|= ++.+++.+.+|+..||+++.+....+ ++++++..+..+..+ +...+. . ..+|.++-+-
T Consensus 12 TGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~iDiLVnnA 88 (263)
T PRK06200 12 TGGGSGIGRALVERFLAEGARVAVLERSAEKCASLRQ---RFGDDVLVVEGDVTSYADNQRAVAQTVDRFGKLDCFVGNA 88 (263)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HHCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 5866799999999999879999999799999999999---8188646871799999999999999999849988899757
Q ss_pred CC
Q ss_conf 52
Q gi|255764511|r 112 GV 113 (341)
Q Consensus 112 Gv 113 (341)
|+
T Consensus 89 G~ 90 (263)
T PRK06200 89 GI 90 (263)
T ss_pred CC
T ss_conf 54
No 310
>PRK09640 RNA polymerase sigma factor SigX; Reviewed
Probab=24.02 E-value=55 Score=14.10 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=24.3
Q ss_pred CCCCCCCCCHHHHHHHC------CHHHHHHHHHHHCC
Q ss_conf 04355684189998622------25789989997446
Q gi|255764511|r 135 MRMSCSGISASDVVNQA------NVKDLTRILGILGE 165 (341)
Q Consensus 135 MRmd~~~~tA~eiln~~------s~~~L~~i~~~yGe 165 (341)
||.||..++-.+++..+ ++.....++..|..
T Consensus 1 ~~~~~~~l~D~eLv~~~~~g~~gD~~AF~~L~~~y~~ 37 (188)
T PRK09640 1 MRYDPRELNDEELVARVHVELFHVTRAYEELMRRYQR 37 (188)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9998131999999999982796389999999999999
No 311
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=23.81 E-value=56 Score=14.07 Aligned_cols=76 Identities=24% Similarity=0.285 Sum_probs=49.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHC----CCCEEEEECC
Q ss_conf 88998376882889999974890-999809989999999985214885277113278898765312----3324786225
Q gi|255764511|r 38 KVILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK----GVDGVVFDLG 112 (341)
Q Consensus 38 g~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~----~vdgIl~DLG 112 (341)
-.++|-=-|.||=+..+...+-+ +.++|.||.|+.--+.+... -.....++.++..+. .+|+++. |
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-------~~~~~~di~~~~~~~~~~~~~Dvlig--G 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-------GDIILGDIKELDGEALRKSDVDVLIG--G 74 (328)
T ss_pred CEEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-------CCCHHHHHHHHCHHHCCCCCCCEEEE--C
T ss_conf 54998658756588999864984899874698899999985888-------74203037660522235567637985--8
Q ss_pred CHHHHHHHHHHCCCCCC
Q ss_conf 20788876540734456
Q gi|255764511|r 113 VSSMQIDCGDRGFSFQK 129 (341)
Q Consensus 113 vSS~Qld~~~RGFSf~~ 129 (341)
-|=-|||...
T Consensus 75 -------pPCQ~FS~aG 84 (328)
T COG0270 75 -------PPCQDFSIAG 84 (328)
T ss_pred -------CCCCCHHHHC
T ss_conf -------9972133407
No 312
>KOG2557 consensus
Probab=23.76 E-value=30 Score=15.76 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 125788888876651340578999999885202445338
Q gi|255764511|r 207 IHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLL 245 (341)
Q Consensus 207 ~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl 245 (341)
+.|+.++|-|-- -|+-..-|+..=..+|.-|--||..
T Consensus 298 L~Pkma~y~aTg--yn~~yqylN~~QQtiPNGLGmGGq~ 334 (427)
T KOG2557 298 LNPKMAIYRATG--YNTNYQYLNFTQQTIPNGLGMGGQI 334 (427)
T ss_pred ECCHHEEECCCC--CCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf 163012543567--7554577414540178754547632
No 313
>KOG3178 consensus
Probab=23.69 E-value=56 Score=14.06 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=18.7
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 6078334009868866083888889983768
Q gi|255764511|r 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFG 46 (341)
Q Consensus 16 ~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG 46 (341)
..+.|-|+|++-++.+|... +++=..+.|
T Consensus 51 ~~~~~~p~ll~r~lr~L~s~--~i~k~~~~~ 79 (342)
T KOG3178 51 PKNPEAPVLLDRILRLLVSY--SILKCRLVG 79 (342)
T ss_pred CCCCCCHHHHHHHHHHHHHH--HHCEEEEEC
T ss_conf 88988726899999999874--120366631
No 314
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=23.40 E-value=38 Score=15.15 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH-----HHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCC
Q ss_conf 09989999999985214885277113278898-----7653123324786225207888765407344566410104355
Q gi|255764511|r 65 DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ-----DYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSC 139 (341)
Q Consensus 65 DrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~-----~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~ 139 (341)
|.-..|...+-..|++-+-++..+.+ +..|- -.+.+.-.|+++= ||.|-| |-=+=||.+.
T Consensus 391 ~~~~sA~r~a~~~lQ~aG~kV~~iaD-~pGl~~lRTVAMlaNEAaDAvl~--gVaSa~------------DiDtAMR~Gv 455 (508)
T TIGR02279 391 DTTDSALRKAVALLQKAGLKVLAIAD-LPGLVVLRTVAMLANEAADAVLQ--GVASAR------------DIDTAMRLGV 455 (508)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHHHH--HCCCHH------------HHHHHHHCCC
T ss_conf 68860689999999765975989617-53178999999999999999862--013444------------6878854676
Q ss_pred C---C-C--CHHHHHHHCCHHHHHHHHHHHCCCCH
Q ss_conf 6---8-4--18999862225789989997446302
Q gi|255764511|r 140 S---G-I--SASDVVNQANVKDLTRILGILGEEKQ 168 (341)
Q Consensus 140 ~---~-~--tA~eiln~~s~~~L~~i~~~yGee~~ 168 (341)
| | + =|.++=-..-.+=|.++-++||||+|
T Consensus 456 NYP~GGPLAWa~qlG~~~~lrvL~NLQ~hYGEeRY 490 (508)
T TIGR02279 456 NYPKGGPLAWAAQLGIARVLRVLENLQRHYGEERY 490 (508)
T ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 88877601056520189999999986665186645
No 315
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=23.39 E-value=50 Score=14.37 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 302688999999997521243213799999988
Q gi|255764511|r 166 EKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKT 198 (341)
Q Consensus 166 e~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~ 198 (341)
.++...-=+.|...| |.+|..|+++|.++
T Consensus 83 ~RWt~~~K~~i~~SR----i~~T~~L~~~i~~~ 111 (307)
T TIGR01777 83 KRWTEERKQEIRDSR----IDTTRALVEAIAAA 111 (307)
T ss_pred CCCCHHHHHHHHHCC----HHHHHHHHHHHHHC
T ss_conf 887877757565233----47899999999846
No 316
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=23.25 E-value=57 Score=14.00 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 789999998852024453389987
Q gi|255764511|r 226 EELAQGLRSAEKALKAGGLLIVVS 249 (341)
Q Consensus 226 ~~L~~~L~~~~~~L~~gGrl~VIS 249 (341)
++|+..+....++-+.=|.++|.|
T Consensus 712 e~l~~~~k~li~~g~~l~K~Vvat 735 (1444)
T COG2176 712 EALKEIIKKLIKLGKKLNKPVVAT 735 (1444)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 999999999999999849908995
No 317
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=23.03 E-value=58 Score=13.97 Aligned_cols=78 Identities=14% Similarity=0.266 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCCC-CEEEECCCC--CCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH
Q ss_conf 9868866083888-889983768--82889999974---8909998099899999999852148-852771132788987
Q gi|255764511|r 25 LEKVIALLNPAPG-KVILDATFG--AGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD 97 (341)
Q Consensus 25 l~Evl~~l~~~~~-g~~iD~TlG--~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~ 97 (341)
|...+.+|.-..| ..|||.--| .-|++-.+-.. ..+|+-.|.||.++..++.+|..-. .+..++++...+-..
T Consensus 57 l~RaVr~La~e~GIrQFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DPvvlaHaraLL~~~~~~~t~~v~aDlrdp~~ 136 (268)
T pfam04672 57 MHRAVRHLAEEAGIRQFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDPIVLTHARALLTSTPEGATDYIHADVRDPEE 136 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
T ss_conf 99999999875495057760569999997214667329986399988982799999999568987746999777779899
Q ss_pred HHHHC
Q ss_conf 65312
Q gi|255764511|r 98 YVPDK 102 (341)
Q Consensus 98 ~l~~~ 102 (341)
++...
T Consensus 137 iL~~p 141 (268)
T pfam04672 137 ILEHP 141 (268)
T ss_pred HHCCH
T ss_conf 86598
No 318
>PRK07062 short chain dehydrogenase; Provisional
Probab=22.99 E-value=58 Score=13.97 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=45.2
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHH-C-CCCEEEECCC---HHHHHHHHHH-----CCCCEEEE
Q ss_conf 7688288----999997489099980998999999998521-4-8852771132---7889876531-----23324786
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRD-Y-KEQFSLFQAT---FSQLQDYVPD-----KGVDGVVF 109 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~-~-~~r~~~~~~~---F~~i~~~l~~-----~~vdgIl~ 109 (341)
|-|.+|= ++.+++.+.+|+..|||++.+..+.+.+.. + ..++..+..+ .+++...... .++|..+-
T Consensus 14 TG~s~GIG~a~a~~la~~Ga~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVn 93 (265)
T PRK07062 14 TGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGGVDMLVN 93 (265)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 57577999999999998799999997988999999999987369965999975799999999999999998399888997
Q ss_pred ECCC
Q ss_conf 2252
Q gi|255764511|r 110 DLGV 113 (341)
Q Consensus 110 DLGv 113 (341)
+-|.
T Consensus 94 NAg~ 97 (265)
T PRK07062 94 NAGQ 97 (265)
T ss_pred CCCC
T ss_conf 7888
No 319
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=22.95 E-value=58 Score=13.96 Aligned_cols=61 Identities=18% Similarity=0.323 Sum_probs=38.9
Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHHH-----CCCCEEEEECCCH
Q ss_conf 99999748909998099899999999852148852771132---7889876531-----2332478622520
Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT---FSQLQDYVPD-----KGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~---F~~i~~~l~~-----~~vdgIl~DLGvS 114 (341)
++.+++.+.+|+..+|+++.++...+.+ ++++.++..+ .+.+...+.. ..+|.++-+-|++
T Consensus 17 A~~la~~Ga~Vv~~~r~~~~l~~l~~~l---g~~~~~~~~Dvsd~~~v~~~~~~~~~~~g~iDiLVnNAG~~ 85 (248)
T PRK10538 17 TRRFIQNGHKVIATGRRQERLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDILVNNAGLA 85 (248)
T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 9999987999999989999999999984---88679999734888999999999999709975999778546
No 320
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=22.92 E-value=58 Score=13.96 Aligned_cols=41 Identities=22% Similarity=0.264 Sum_probs=33.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCE-EEEECCCHHHHHHHHHHHH
Q ss_conf 8998376882889999974890-9998099899999999852
Q gi|255764511|r 39 VILDATFGAGGYSRSFCKMGSN-VIALDRDPFAVSCGQETMR 79 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~iL~~~~~-liaiDrD~~ai~~a~~~l~ 79 (341)
.+||-=-|.||=|..+-.++-+ +.|+|.|+.|++--+.+..
T Consensus 2 ~vidlF~G~GG~s~G~~~aG~~~~~a~e~d~~a~~ty~~N~~ 43 (319)
T pfam00145 2 KFIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFP 43 (319)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCC
T ss_conf 589978070789999998799299998389999999998779
No 321
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family; InterPro: IPR014189 Members of this family are putative quinone oxidoreductases that belong to the broader superfamily of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxidoreductases. An alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, consequently members of this entry are likely to be quinone oxidoreductases. A member of this family in Homo sapiens (Human), PIG3, is induced by p53 but is otherwise uncharacterised..
Probab=22.74 E-value=58 Score=13.94 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=49.6
Q ss_pred CCCCCE--EEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHH-HHHHHHHHCCCCEEEECCCHHHH-HHHHHH-CCCCEE
Q ss_conf 388888--9983768828899999748-90999809989999-99998521488527711327889-876531-233247
Q gi|255764511|r 34 PAPGKV--ILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVS-CGQETMRDYKEQFSLFQATFSQL-QDYVPD-KGVDGV 107 (341)
Q Consensus 34 ~~~~g~--~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~-~a~~~l~~~~~r~~~~~~~F~~i-~~~l~~-~~vdgI 107 (341)
.++|.+ +==+|=|=|.++-.+-++. .+|+.==--+|=.+ .+.++-.+ -=+.+.-.+|-+. .+.... .++|=|
T Consensus 142 L~~GEtvLiHGGaSGIGttAIqLAKA~Ga~V~~TaGS~eK~~~a~~~LGAd--~aINY~e~DFve~~k~~t~g~kGvDVI 219 (334)
T TIGR02824 142 LKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCATACEALGAD--IAINYREEDFVEVVKEETGGGKGVDVI 219 (334)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHCCCCCCCCEE
T ss_conf 378972899713673679999999856975999828989999999860980--786077734799999826899853179
Q ss_pred EEECCCHHHHHH
Q ss_conf 862252078887
Q gi|255764511|r 108 VFDLGVSSMQID 119 (341)
Q Consensus 108 l~DLGvSS~Qld 119 (341)
|==-|=|.++-.
T Consensus 220 LD~vGg~Yl~~N 231 (334)
T TIGR02824 220 LDIVGGSYLARN 231 (334)
T ss_pred EECCCHHHHHHH
T ss_conf 857766889989
No 322
>KOG1500 consensus
Probab=22.72 E-value=58 Score=13.94 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=52.3
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCC
Q ss_conf 88660838888899837688288999997489-099980998999999998521--488527711327889876531233
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGV 104 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~v 104 (341)
+++.-..-.+.+++|.--|.|=-|-.--.++. +|||+..- ++-.+|+++.+. ..+|++.+.+.-.++. +++ ++
T Consensus 169 il~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--LPE-k~ 244 (517)
T KOG1500 169 ILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--LPE-KV 244 (517)
T ss_pred HHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHH-HHHHHHHHHHHCCCCCCEEEECCCCCCEEC--CCC-CC
T ss_conf 87043345774899815882489999987386538987456-799999998743663203787056320103--751-03
Q ss_pred CEEEE
Q ss_conf 24786
Q gi|255764511|r 105 DGVVF 109 (341)
Q Consensus 105 dgIl~ 109 (341)
|-|+-
T Consensus 245 DviIS 249 (517)
T KOG1500 245 DVIIS 249 (517)
T ss_pred CEEEE
T ss_conf 47872
No 323
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=22.67 E-value=58 Score=13.93 Aligned_cols=58 Identities=21% Similarity=0.209 Sum_probs=23.8
Q ss_pred HHHHHHCCCCCCEEEE-CCCCCCHHHHHH---HH-HCCE--EEEEC----CCHHHHHHHHHHHHHCCCCE
Q ss_conf 6886608388888998-376882889999---97-4890--99980----99899999999852148852
Q gi|255764511|r 27 KVIALLNPAPGKVILD-ATFGAGGYSRSF---CK-MGSN--VIALD----RDPFAVSCGQETMRDYKEQF 85 (341)
Q Consensus 27 Evl~~l~~~~~g~~iD-~TlG~GGHS~~i---L~-~~~~--liaiD----rD~~ai~~a~~~l~~~~~r~ 85 (341)
.+...+.+....++|= +.=-+||...++ |. .+-+ |+.+. ..+++.. ..++++..+-.+
T Consensus 19 ~i~~~~~~~~~~v~il~G~GNNGGDGlv~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 87 (170)
T pfam03853 19 VIRKLLSPAGKRVLVLCGPGNNGGDGLAAARHLAQRGYKVTVLLLNPDEKLSEDARR-ALEIAKKLGGKI 87 (170)
T ss_pred HHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHH-HHHHHHHCCCCE
T ss_conf 999861877886999987998728899999999987990799996785559999999-999999869967
No 324
>TIGR01233 lacG 6-phospho-beta-galactosidase; InterPro: IPR005928 6-phospho-beta-galactosidase (3.2.1.85 from EC) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. A 6-phospho-beta-D-galactoside + H2O = an alcohol + 6-phospho-D-galactose The genes coding for the enzymes of the tagatose 6-phosphate pathway have been found to be part of the lac operon together with the genes coding for the lactose-phosphotransferase system and the phospho-beta-galactosidase in Lactococcus lactis, Staphlococcus aureus, and Streptococcus mutans. ; GO: 0004553 hydrolase activity hydrolyzing O-glycosyl compounds, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=22.57 E-value=47 Score=14.52 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=38.8
Q ss_pred CCCEEEECCCCCCHHHH------HHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH
Q ss_conf 88889983768828899------999748--909998099899999999852148852771132788
Q gi|255764511|r 36 PGKVILDATFGAGGYSR------SFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341)
Q Consensus 36 ~~g~~iD~TlG~GGHS~------~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341)
.+..++|+|+-+--|.+ .||..+ |.+=.-|.|-.||..|+..+ -|.=+|.-||+
T Consensus 241 ~N~l~LD~T~~G~Y~~~Tl~~V~~IL~~Nh~~~l~~~~~~~~A~D~A~~~~-----DF~G~N~Y~S~ 302 (473)
T TIGR01233 241 ENKLILDATLLGEYSDKTLELVKEILDENHQGELDLRDEDFKALDEAKDLL-----DFLGVNYYFSD 302 (473)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC-----CCEEEHHHHHH
T ss_conf 402332021024301678999999997227885467847889999875210-----40000377888
No 325
>KOG1419 consensus
Probab=22.33 E-value=43 Score=14.79 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=31.2
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHH
Q ss_conf 99975212432137999999887643127712578888-887665
Q gi|255764511|r 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSF-QALRIF 220 (341)
Q Consensus 177 v~~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~F-QALRI~ 220 (341)
++...-.-+.+..||-+..+++++.-+.-+.++|.|.| ||+|+|
T Consensus 471 ~ee~~~~~~~~iedl~p~~k~~iraiR~l~~~vakrkFketlrPY 515 (654)
T KOG1419 471 VEEKSTPCIFHIEDLTPALKNAIRAIRRLQFLVAKRKFKETLRPY 515 (654)
T ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 002468875417754788998998867631113457788753841
No 326
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=22.31 E-value=24 Score=16.40 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=32.2
Q ss_pred HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHH
Q ss_conf 48909998099899999999852148852771132788987653123324786225207
Q gi|255764511|r 57 MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 (341)
Q Consensus 57 ~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS 115 (341)
..|+..|++.|. +....+.+ +-.+.+...+....-..+....+|.++..++.+.
T Consensus 18 ~~G~~~G~~~Di--l~~~~~~l---g~~i~~~~~~~~r~~~~l~~g~~D~~~~~~~~~~ 71 (219)
T smart00062 18 EDGELTGFDVDL--AKAIAKEL---GLKVEFVEVSFDNLLTALKSGKIDVVAAGMTITP 71 (219)
T ss_pred CCCCEEEEHHHH--HHHHHHHH---CCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCH
T ss_conf 999778829999--99999997---9967999847899999997589770531135786
No 327
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=22.26 E-value=22 Score=16.62 Aligned_cols=30 Identities=17% Similarity=0.394 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 783340098688660838888899837688
Q gi|255764511|r 18 GDHVPVLLEKVIALLNPAPGKVILDATFGA 47 (341)
Q Consensus 18 ~~H~PVll~Evl~~l~~~~~g~~iD~TlG~ 47 (341)
...+|||.++-.+.+...+-.++||+.+--
T Consensus 72 ~g~ipVlvd~~~~~l~~l~p~vlVDA~laK 101 (256)
T TIGR03309 72 QGEIPVLVDPEASVIRELKPLIVVDAILAK 101 (256)
T ss_pred CCCCEEEECCCHHHHHHCCCCEEEEEEECC
T ss_conf 497149975502035423985999911024
No 328
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=22.26 E-value=44 Score=14.74 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=14.2
Q ss_pred CCCCCCEEEEEEECCCHH
Q ss_conf 024453389987255023
Q gi|255764511|r 238 ALKAGGLLIVVSFHSLED 255 (341)
Q Consensus 238 ~L~~gGrl~VISFHSLED 255 (341)
+-.|.|+.+++.||+-||
T Consensus 33 ~kHp~~~~vtVP~Hp~~d 50 (66)
T COG1724 33 YKHPDGGRVTVPFHPGED 50 (66)
T ss_pred EECCCCCEEEECCCCCCC
T ss_conf 875999879951788664
No 329
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.24 E-value=60 Score=13.87 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=43.7
Q ss_pred CCCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHH---HHHHH----CCCCEEEEE
Q ss_conf 3768828899----9997489099980998999999998521-4885277113278898---76531----233247862
Q gi|255764511|r 43 ATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQ---DYVPD----KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~-~~~r~~~~~~~F~~i~---~~l~~----~~vdgIl~D 110 (341)
-|=|.+|-=. .+++.+.+|+..||+++.+..+.+.+.. ++.++.++..+.++.+ +.+.+ ..+|.++..
T Consensus 13 ITG~s~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~~dilv~n 92 (263)
T PRK08339 13 TTASSKGIGFGVARVLARAGADVIILSRNEENLKRAKEKIKSESDVEVHYIVADLTKREDLERTVKELKNIGDPDIFFFS 92 (263)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 91626099999999999869999999798899999999998504985799984899999999999999956999899989
Q ss_pred CCC
Q ss_conf 252
Q gi|255764511|r 111 LGV 113 (341)
Q Consensus 111 LGv 113 (341)
-|.
T Consensus 93 ag~ 95 (263)
T PRK08339 93 TGG 95 (263)
T ss_pred CCC
T ss_conf 999
No 330
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=22.19 E-value=60 Score=13.87 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHCCCC---CCEEEEEEECC
Q ss_conf 899999988520244---53389987255
Q gi|255764511|r 227 ELAQGLRSAEKALKA---GGLLIVVSFHS 252 (341)
Q Consensus 227 ~L~~~L~~~~~~L~~---gGrl~VISFHS 252 (341)
++-.+|..|..+|+. ||++. .|.|
T Consensus 117 ~~GsAl~~A~~~L~~~~~GGkI~--~f~s 143 (239)
T cd01468 117 CLGPALQAAFLLLKGTFAGGRII--VFQG 143 (239)
T ss_pred CHHHHHHHHHHHHHCCCCCCEEE--EEEC
T ss_conf 37999999999972457896699--9957
No 331
>TIGR00726 TIGR00726 conserved hypothetical protein TIGR00726; InterPro: IPR003730 This entry represents a group of hypothetical proteins, including YfiH from Shigella flexneri , YlmD from Bacillus stearothermophilus, NMB0706 from Neisseria meningitidis serogroup B and CC0490 from Caulobacter crescentus. These proteins share a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets. .
Probab=21.85 E-value=17 Score=17.42 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=18.2
Q ss_pred CEEEEECCCHHHHHHHHHHC--------CCCCCCC
Q ss_conf 24786225207888765407--------3445664
Q gi|255764511|r 105 DGVVFDLGVSSMQIDCGDRG--------FSFQKSG 131 (341)
Q Consensus 105 dgIl~DLGvSS~Qld~~~RG--------FSf~~dg 131 (341)
.-.|.|+|+++-||...+|= |||+++.
T Consensus 209 ~~qL~~~G~~~e~I~~~~~CT~~~~~~ffSyRR~~ 243 (268)
T TIGR00726 209 RLQLRELGLKSEQIFVSERCTYTEPETFFSYRRDK 243 (268)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99988558751233366657332876778432014
No 332
>PRK07102 short chain dehydrogenase; Provisional
Probab=21.77 E-value=61 Score=13.81 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=41.8
Q ss_pred CCCCCCHH-HHHHHHHCCEEEEECCCHHHHHHHHHHHHH-CCCCEEEECCCHH---HHHHHHHH--CCCCEEEEECCC
Q ss_conf 37688288-999997489099980998999999998521-4885277113278---89876531--233247862252
Q gi|255764511|r 43 ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFS---QLQDYVPD--KGVDGVVFDLGV 113 (341)
Q Consensus 43 ~TlG~GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l~~-~~~r~~~~~~~F~---~i~~~l~~--~~vdgIl~DLGv 113 (341)
|+=|=|-. ++.+.+.+.+|+..+||++.++...+.+.. ++..+..+..+.. .+...+.. ..+|.++..-|+
T Consensus 9 assGIG~a~A~~la~~G~~v~l~~R~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~v~~aG~ 86 (243)
T PRK07102 9 ATSDIARACARRYAAAGARLYLAARDTERLERIAADLEARGAVAVATHELDILDTARHAAFLDNLPALPDTVLIAVGT 86 (243)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEEC
T ss_conf 745999999999998799899998988999999999985358628998434036999999999987537979997303
No 333
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=21.62 E-value=39 Score=15.04 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=37.3
Q ss_pred HHHCCCHH-HHHHHHH--------------HHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 65134057-8999999--------------885202445338998725502389999998641788-7776567787777
Q gi|255764511|r 219 IFVNNEIE-ELAQGLR--------------SAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGKV-MAVRHMIPSNAHP 282 (341)
Q Consensus 219 I~VN~El~-~L~~~L~--------------~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~~~~-~~~~~~~~~~~~~ 282 (341)
|++|+|++ +.-+.+. .+.++|+....+-|+.--.+.-+-...-++...+.- .-.+. ......
T Consensus 307 IA~Nr~vD~etA~~i~~~F~EvIIAP~~~~~Al~il~kK~NlRvL~~~~~~~~~~~~~~k~v~GGlLvQ~~d--~~~~~~ 384 (515)
T COG0138 307 IALNREVDVETAEAISKIFLEVIIAPSYTEEALEILAKKKNLRVLTIGPLGPRAAGLEFKRVSGGLLVQERD--DGMIDE 384 (515)
T ss_pred EEECCCCCHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEEEEEEEECCC--CCCCCC
T ss_conf 997474599999999866079998689998999999625765899648877777642689982058997464--456673
Q ss_pred CCEEECCCCCCCCCHHHHHH
Q ss_conf 54045248654788899982
Q gi|255764511|r 283 AVFQSITKKVVVPTQEDVAF 302 (341)
Q Consensus 283 ~~~~~l~kkpi~PS~~Ei~~ 302 (341)
..|+++|++. ||++|++.
T Consensus 385 ~~~~vVTkr~--pt~~e~~d 402 (515)
T COG0138 385 AELKVVTKRQ--PTEQELED 402 (515)
T ss_pred CCEEEECCCC--CCHHHHHH
T ss_conf 0106742789--99899999
No 334
>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]
Probab=21.54 E-value=56 Score=14.05 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=7.8
Q ss_pred EEEECCCHHHHHHHHHHCC
Q ss_conf 7862252078887654073
Q gi|255764511|r 107 VVFDLGVSSMQIDCGDRGF 125 (341)
Q Consensus 107 Il~DLGvSS~Qld~~~RGF 125 (341)
.+-+.||.|+ ..-||+
T Consensus 59 ~~v~iGyrsP---k~vRgl 74 (133)
T COG1717 59 PMVKIGYRSP---KAVRGL 74 (133)
T ss_pred CCCCCCCCCC---HHHCCC
T ss_conf 9864577882---765256
No 335
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=21.46 E-value=62 Score=13.77 Aligned_cols=87 Identities=21% Similarity=0.322 Sum_probs=61.2
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH
Q ss_conf 0098688660838888899837688288999997489-099980998999999998521488527711327889876531
Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 (341)
Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~ 101 (341)
.||..-|.-+ ++..-+|--=.|.|==|...-+++. +++|.|.-|.|...++++-.-.+..+.++.+... +-+..
T Consensus 10 ~LL~~nL~~~--k~ddeVlEiG~GtGlvair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~Dlf---~~v~g 84 (183)
T TIGR00537 10 LLLEANLREL--KPDDEVLEIGAGTGLVAIRLKEKGKKKILTTDINPFAVKLLRENAKLNNVELDVLETDLF---EGVRG 84 (183)
T ss_pred HHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCCCCEEEEECCCC---CCCCC
T ss_conf 9999986751--699528997168048999985158820788636879999877310002664047611135---78555
Q ss_pred CCCCEEEEECCCH
Q ss_conf 2332478622520
Q gi|255764511|r 102 KGVDGVVFDLGVS 114 (341)
Q Consensus 102 ~~vdgIl~DLGvS 114 (341)
.+||-|||+==|=
T Consensus 85 eKFdviLFNpPYl 97 (183)
T TIGR00537 85 EKFDVILFNPPYL 97 (183)
T ss_pred CCEEEEEECCCCC
T ss_conf 5102773078988
No 336
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.45 E-value=62 Score=13.77 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=45.4
Q ss_pred HHHHHHHCCEEE-EECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHHH-----CCCCEEEEECCCH
Q ss_conf 999997489099-9809989999999985214885277113278898---76531-----2332478622520
Q gi|255764511|r 51 SRSFCKMGSNVI-ALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVPD-----KGVDGVVFDLGVS 114 (341)
Q Consensus 51 S~~iL~~~~~li-aiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~~-----~~vdgIl~DLGvS 114 (341)
++.+++.+.+|+ ..+++++.+....+.+.+.+.++.+++.+.++.+ +.+.. .++|.++..-|+.
T Consensus 22 a~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lVnnAg~~ 94 (247)
T PRK05565 22 AELLAKEGAKVVIAYDKNEEAANELLEEIKEVGGDAIAVKADVSSEDDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 9999987998999817998999999999996399089998358999999999999999809984999899878
No 337
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=21.45 E-value=62 Score=13.77 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=16.4
Q ss_pred EEEEECCCHHHHHHHHHHH--HHCCCCEEEECCCHHHH
Q ss_conf 0999809989999999985--21488527711327889
Q gi|255764511|r 60 NVIALDRDPFAVSCGQETM--RDYKEQFSLFQATFSQL 95 (341)
Q Consensus 60 ~liaiDrD~~ai~~a~~~l--~~~~~r~~~~~~~F~~i 95 (341)
+|+|+.+-|.|+..-+.++ +.++++++++.+...+.
T Consensus 216 ~i~AVEKNpnA~vtL~~r~n~~~W~~~V~ii~~DMR~w 253 (447)
T pfam05185 216 KIYAVEKNPNAVVTLQKRVNFEEWGDKVTLISSDMREW 253 (447)
T ss_pred EEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHCC
T ss_conf 99999568779999999850543178069990800057
No 338
>PRK09186 flagellin modification protein A; Provisional
Probab=21.43 E-value=62 Score=13.77 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=43.6
Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHH-CCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEE
Q ss_conf 7688288----999997489099980998999999998521-488527711327889---876531-----233247862
Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFD 110 (341)
Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~-~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~D 110 (341)
|-|.+|= ++.+++.+.+|+..|+|.+......+.+.+ ++.++.++..+.++- .+.+.. ..+|+++-.
T Consensus 10 TGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g~id~lVnn 89 (255)
T PRK09186 10 TGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERYGKIDGAVNC 89 (255)
T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 79586899999999998799999996988999999999987059807999846899999999999999981997789975
Q ss_pred C
Q ss_conf 2
Q gi|255764511|r 111 L 111 (341)
Q Consensus 111 L 111 (341)
=
T Consensus 90 A 90 (255)
T PRK09186 90 A 90 (255)
T ss_pred C
T ss_conf 7
No 339
>PRK06227 consensus
Probab=21.29 E-value=62 Score=13.75 Aligned_cols=72 Identities=22% Similarity=0.294 Sum_probs=48.9
Q ss_pred CCCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CCCCEEEEE
Q ss_conf 3768828899----999748909998099899999999852148852771132788---987653----1-233247862
Q gi|255764511|r 43 ATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KGVDGVVFD 110 (341)
Q Consensus 43 ~TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~vdgIl~D 110 (341)
-|-|.+|==+ .+.+.+.+|+..|+|+++.....+.++..+.+..++..+.++ +...+. . .++|.++-+
T Consensus 10 VTGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVNN 89 (256)
T PRK06227 10 VTGGGQGIGAAIAQTFAENGAKVVIADIDEEAGLEREEMLRSNGLDALFVKTDVSDEEDVKNMVRKTVERYGGIDILINN 89 (256)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 95866889999999999879999999698889999999999559918999816899999999999999982999799989
Q ss_pred CCCH
Q ss_conf 2520
Q gi|255764511|r 111 LGVS 114 (341)
Q Consensus 111 LGvS 114 (341)
-|+.
T Consensus 90 AGi~ 93 (256)
T PRK06227 90 AGIF 93 (256)
T ss_pred CCCC
T ss_conf 9899
No 340
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=21.06 E-value=60 Score=13.87 Aligned_cols=95 Identities=15% Similarity=0.320 Sum_probs=45.8
Q ss_pred HHHHHHHCCCCEEEECCCHHHH--------------------HHHHHHCCCCEEEEECCCHH-----HHHHHHHHCCCCC
Q ss_conf 9998521488527711327889--------------------87653123324786225207-----8887654073445
Q gi|255764511|r 74 GQETMRDYKEQFSLFQATFSQL--------------------QDYVPDKGVDGVVFDLGVSS-----MQIDCGDRGFSFQ 128 (341)
Q Consensus 74 a~~~l~~~~~r~~~~~~~F~~i--------------------~~~l~~~~vdgIl~DLGvSS-----~Qld~~~RGFSf~ 128 (341)
|-+-|++-+-++.++|+|=+.+ .+++.....||||+-||==+ ++| .
T Consensus 32 AcKALkEEGy~viLVNsNpATimTD~~~AD~vY~ePlT~e~V~~IIEKERPDgiL~t~GGQTALNlav~L---------~ 102 (1089)
T TIGR01369 32 ACKALKEEGYEVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDGILPTLGGQTALNLAVEL---------E 102 (1089)
T ss_pred HHHHHHHCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHH---------H
T ss_conf 9999876495799975884723388668660025254588886665316866000257603577778866---------2
Q ss_pred CCCCEECCCCCC--CCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 664101043556--84189998622257899899974463026889999999
Q gi|255764511|r 129 KSGPLDMRMSCS--GISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVK 178 (341)
Q Consensus 129 ~dgpLDMRmd~~--~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~ 178 (341)
..|=|+ +++=. |-+..-|-..=|.+.....+.+-|+.==...+|+.+-.
T Consensus 103 ~~GVL~-kYgV~vLGT~~eaI~kaEDRe~F~~~M~ei~~pvp~S~~~~~~eE 153 (1089)
T TIGR01369 103 ESGVLE-KYGVEVLGTPVEAIKKAEDRELFREAMKEIGEPVPKSEIVHSVEE 153 (1089)
T ss_pred HCCCCH-HHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 068514-529178523424352020279999999973899881100278899
No 341
>COG0618 Exopolyphosphatase-related proteins [General function prediction only]
Probab=20.94 E-value=23 Score=16.59 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=8.1
Q ss_pred ECCCHHHHHHHH
Q ss_conf 809989999999
Q gi|255764511|r 64 LDRDPFAVSCGQ 75 (341)
Q Consensus 64 iDrD~~ai~~a~ 75 (341)
..-||+|+.-+-
T Consensus 25 ~nPD~DalgSa~ 36 (332)
T COG0618 25 ENPDPDALGSAL 36 (332)
T ss_pred CCCCCCHHHHHH
T ss_conf 899953899999
No 342
>PRK07831 short chain dehydrogenase; Provisional
Probab=20.86 E-value=64 Score=13.69 Aligned_cols=66 Identities=11% Similarity=0.143 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH-CC-CCEEEECCCHHH---HHHHHHH-----CCCCEEEEECCCH
Q ss_conf 88999997489099980998999999998521-48-852771132788---9876531-----2332478622520
Q gi|255764511|r 49 GYSRSFCKMGSNVIALDRDPFAVSCGQETMRD-YK-EQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDLGVS 114 (341)
Q Consensus 49 GHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~-~~-~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DLGvS 114 (341)
..++.+++.+.+|+..|++++.+..+.+.+.. ++ .++..+..+.++ +++.+.. .++|..+-+-|+.
T Consensus 32 a~a~~la~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~~~G~iDiLVNNAG~~ 107 (261)
T PRK07831 32 ATARRALEEGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGLG 107 (261)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9999999879989998087777899999999843877289997568999999999999999829986999888668
No 343
>TIGR01444 fkbM_fam methyltransferase, FkbM family; InterPro: IPR006342 Members of this group are characterised by two well-conserved short regions separated by a variable region in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterised as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548 ..
Probab=20.85 E-value=64 Score=13.69 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=45.8
Q ss_pred EEEECCCCCCHHHHHHHHHC----CEEEEECCCHHHHHHHHHHHHHCCC-C--EEEECCCHHHHHH
Q ss_conf 89983768828899999748----9099980998999999998521488-5--2771132788987
Q gi|255764511|r 39 VILDATFGAGGYSRSFCKMG----SNVIALDRDPFAVSCGQETMRDYKE-Q--FSLFQATFSQLQD 97 (341)
Q Consensus 39 ~~iD~TlG~GGHS~~iL~~~----~~liaiDrD~~ai~~a~~~l~~~~~-r--~~~~~~~F~~i~~ 97 (341)
+++|+=-.-|.+|..+.... +++++|+-+|.+....++++..... . +.+++.--++-..
T Consensus 1 ~~~D~GAn~G~~~~~~~~~~~~~~~~v~afEP~p~~~~~l~~n~~~n~~~~~~~~~~~~A~g~~~G 66 (142)
T TIGR01444 1 VVIDVGANIGDFSLYFARKGAEGGGRVIAFEPLPDAYEILEENVKLNGLPNKEVKLLNAAVGDREG 66 (142)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC
T ss_conf 978701770479999997417887318998689579999998620378787328997300015688
No 344
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=20.71 E-value=64 Score=13.67 Aligned_cols=197 Identities=16% Similarity=0.189 Sum_probs=95.7
Q ss_pred CCCHHH--HHHHHHCC--EEEEECCCHHHHHHHHHHHH--H-C--------CCCEEEECCCHHHHHHHHHH----CCCCE
Q ss_conf 882889--99997489--09998099899999999852--1-4--------88527711327889876531----23324
Q gi|255764511|r 46 GAGGYS--RSFCKMGS--NVIALDRDPFAVSCGQETMR--D-Y--------KEQFSLFQATFSQLQDYVPD----KGVDG 106 (341)
Q Consensus 46 G~GGHS--~~iL~~~~--~liaiDrD~~ai~~a~~~l~--~-~--------~~r~~~~~~~F~~i~~~l~~----~~vdg 106 (341)
|-=|-| .++-+++. +|+|+|++++++..|.+.-- . + +..+.++...-+.+.+++.. .+-+.
T Consensus 15 GLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~~~~~e~~~~~DlIilatPv~~~~~vl~~l~~~l~~~~ 94 (307)
T PRK07502 15 GLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEIAPHLKPGA 94 (307)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf 87999999999854998579998499999999998699751127776640458979991789999999999985558996
Q ss_pred EEEECCCHHHHHHHHH-----HCCCCCCCCCEECCCCCCCCCHH--HHHH----------HCCH---HHHHHHHHHHCCC
Q ss_conf 7862252078887654-----07344566410104355684189--9986----------2225---7899899974463
Q gi|255764511|r 107 VVFDLGVSSMQIDCGD-----RGFSFQKSGPLDMRMSCSGISAS--DVVN----------QANV---KDLTRILGILGEE 166 (341)
Q Consensus 107 Il~DLGvSS~Qld~~~-----RGFSf~~dgpLDMRmd~~~~tA~--eiln----------~~s~---~~L~~i~~~yGee 166 (341)
++.|.|=.=-.+-+.- .++.|-...|+==+ ..+|+.++ ++-. ..++ +.+..++..-|-.
T Consensus 95 ivTDvgSvK~~I~~~~~~~~~~~~~FVg~HPmAGs-E~sG~~~A~~~LF~~~~~iltp~~~~~~~~~~~v~~lw~~lGa~ 173 (307)
T PRK07502 95 IVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGT-EHSGPDAGFAELFENRWCILTPPEGTDPAAVARLRAFWRALGAR 173 (307)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCCCEECCCCCCCC-CCCCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 89966321189999999856777836726887678-87551010014743870899679999999999999999963987
Q ss_pred C-----------------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHCCCCHHH--HHHHHHHHHHHCCCHH
Q ss_conf 0-----------------268899999999752124321379999998876-4312771257--8888887665134057
Q gi|255764511|r 167 K-----------------QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY-FSKNNRIHPA--TRSFQALRIFVNNEIE 226 (341)
Q Consensus 167 ~-----------------~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~-~~~~~k~hpa--tr~FQALRI~VN~El~ 226 (341)
. ...-||-+++..-..-.-.+-.++..+.....+ ..|-....|. +-.|..=|=+|.+.|+
T Consensus 174 v~~m~~~eHD~~~A~~SHLPHliA~aLv~~~~~~~~~~~~~~~~~aggGfrD~TRIA~s~p~mW~dI~~~N~~~il~~ld 253 (307)
T PRK07502 174 VEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSASGFRDFTRIAASDPTMWRDVFLHNKDAVLEMLG 253 (307)
T ss_pred EEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99946457756888660158999999999887641034467887615774432346149857999999980999999999
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 89999998852024453
Q gi|255764511|r 227 ELAQGLRSAEKALKAGG 243 (341)
Q Consensus 227 ~L~~~L~~~~~~L~~gG 243 (341)
.+..-|....+.|..+-
T Consensus 254 ~~~~~L~~l~~~i~~~d 270 (307)
T PRK07502 254 RFTEDLAALQRAIRWGD 270 (307)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999998359
No 345
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=20.56 E-value=22 Score=16.65 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=27.9
Q ss_pred HHHCC-CCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 53123-3247862252078887654073445664101043
Q gi|255764511|r 99 VPDKG-VDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 (341)
Q Consensus 99 l~~~~-vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRm 137 (341)
+|+.+ =-|+-.||||||..+++..+=..| -|.|=-=||
T Consensus 31 lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~-iDvPGHe~f 69 (627)
T TIGR00475 31 LPEEKQKRGMTIDLGFAYLPLPDINKRLGF-IDVPGHEKF 69 (627)
T ss_pred CCCCCCCCCCEEECCCEECCCCCCCCCCEE-EECCCHHHH
T ss_conf 774102576624604200367777713347-855973899
No 346
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=20.47 E-value=65 Score=13.64 Aligned_cols=66 Identities=18% Similarity=0.325 Sum_probs=39.8
Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHH---HHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH
Q ss_conf 009868866083888889983768828899---99974---89099980998999999998521488527711327889
Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSR---SFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 (341)
Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~---~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i 95 (341)
++.+|++.-+ +| .++|-+-...||-+. .+|+. .++|+|+|.|...... +.++ ..|++++.++=.+.
T Consensus 22 ~~~qeii~~~--kP-d~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~--~~i~--~~~I~lieg~s~d~ 93 (202)
T pfam04989 22 VAYQELIWEL--KP-DLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNR--PAIE--APRITFIQGSSTDP 93 (202)
T ss_pred HHHHHHHHHH--CC-CEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH--HHHC--CCCEEEEECCCCCH
T ss_conf 9999999985--99-989996167662899999999973899879999576443354--3531--68769997685678
No 347
>pfam02963 EcoRI Restriction endonuclease EcoRI.
Probab=20.05 E-value=38 Score=15.17 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=22.3
Q ss_pred HHHHHHHHCCCCCCEEEEEEECC----CHHHHH
Q ss_conf 99998852024453389987255----023899
Q gi|255764511|r 230 QGLRSAEKALKAGGLLIVVSFHS----LEDRLV 258 (341)
Q Consensus 230 ~~L~~~~~~L~~gGrl~VISFHS----LEDRiV 258 (341)
.+|.....+-+|.||++++.|+| -=||+-
T Consensus 157 nFlTeti~v~rpdGr~v~l~~~sg~lnrlDRlT 189 (257)
T pfam02963 157 NFLTENISVTRPDGRVVNLEYNSGMLNRLDRLT 189 (257)
T ss_pred CCCEEEEEEECCCCCEEEEEECCCCCCCHHHHH
T ss_conf 630004786569983799972675302103555
No 348
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.03 E-value=66 Score=13.58 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=42.3
Q ss_pred CCCCCCHH-HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHH----H-CCCCEEEEECCC
Q ss_conf 37688288-99999748909998099899999999852148852771132---788987653----1-233247862252
Q gi|255764511|r 43 ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQAT---FSQLQDYVP----D-KGVDGVVFDLGV 113 (341)
Q Consensus 43 ~TlG~GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~---F~~i~~~l~----~-~~vdgIl~DLGv 113 (341)
|+=|=|=. ++.+.+.+.+|+..+|+.+.++...+.+. ..++.++..+ .+.+.+... . ..+|-++.+=|+
T Consensus 10 assGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~--~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~iDilinNAGi 87 (256)
T PRK07024 10 ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--KARVSVYAADVRDADALAAAAADFIAAHGCPDVVIANAGI 87 (256)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCC--CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 60299999999999889989999898899999999767--9976999811799999999999999983998799988855
Q ss_pred H
Q ss_conf 0
Q gi|255764511|r 114 S 114 (341)
Q Consensus 114 S 114 (341)
+
T Consensus 88 ~ 88 (256)
T PRK07024 88 S 88 (256)
T ss_pred C
T ss_conf 6
Done!