HHsearch alignment for GI: 255764511 and conserved domain: pfam01170

>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.

Probab=97.09  E-value=0.0035  Score=41.19  Aligned_cols=87  Identities=22%  Similarity=0.247  Sum_probs=63.9

Q ss_pred             CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHH
Q ss_conf             00986886608388888998376882889999974--890999809989999999985214--88527711327889876
Q gi|255764511|r   23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDY   98 (341)
Q Consensus        23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~   98 (341)
T Consensus        15 ~lAa~l~~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~--   92 (171)
T pfam01170        15 TLARAMVNLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLP--   92 (171)
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--
T ss_conf             999999998589999978868998789999999961358953675879999999999998289984699976665387--


Q ss_pred             HHHCCCCEEEEEC
Q ss_conf             5312332478622
Q gi|255764511|r   99 VPDKGVDGVVFDL  111 (341)
Q Consensus        99 l~~~~vdgIl~DL  111 (341)
T Consensus        93 ~~~~~~d~Iv~nP  105 (171)
T pfam01170        93 LLNGSVDTIVTDP  105 (171)
T ss_pred             CCCCCCEEEEECC
T ss_conf             9878831899889