HHsearch alignment for GI: 255764511 and conserved domain: pfam06962
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=98.40 E-value=5.6e-07 Score=65.73 Aligned_cols=111 Identities=27% Similarity=0.465 Sum_probs=85.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCC
Q ss_conf 0999809989999999985214--88527711327889876531233247862252078887654073445664101043
Q gi|255764511|r 60 NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRM 137 (341)
Q Consensus 60 ~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRm 137 (341)
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLP--------------gg--D--- 61 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLP--------------GG--D--- 61 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCC--------------CC--C---
T ss_conf 9579960999999999999965987568999779888986376467668999667688--------------99--9---
Q ss_pred CCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 55684189998622257899899974463026889999999975212432137999999887643127712578888887
Q gi|255764511|r 138 SCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQAL 217 (341)
Q Consensus 138 d~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQAL 217 (341)
T Consensus 62 ---------------------------------------------k~i~T~~~--------------------t-T---- 71 (140)
T pfam06962 62 ---------------------------------------------KSITTKPD--------------------T-T---- 71 (140)
T ss_pred ---------------------------------------------CCCEECCH--------------------H-H----
T ss_conf ---------------------------------------------87587772--------------------0-9----
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE--CC---CHHHHHHHHHHHHCCCCC
Q ss_conf 665134057899999988520244533899872--55---023899999986417887
Q gi|255764511|r 218 RIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF--HS---LEDRLVKKFFASRSGKVM 270 (341)
Q Consensus 218 RI~VN~El~~L~~~L~~~~~~L~~gGrl~VISF--HS---LEDRiVK~ff~~~~~~~~ 270 (341)
T Consensus 72 -----------i~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~aV~~~~~~L~~~~~ 118 (140)
T pfam06962 72 -----------LEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVLDFVSNLDQKKW 118 (140)
T ss_pred -----------HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHE
T ss_conf -----------99999999963669899999979999879999999999984896057