HHsearch results for GI: 255764511 and protein with PDBid: 1fbn_A
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=96.69 E-value=0.0068 Score=37.94 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=60.7
Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-CCC
Q ss_conf 8866083888889983768828899999748--9099980998999999998521488527711327889876531-233
Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-KGV 104 (341)
Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~-~~v 104 (341)
-++.|.++||..++|.-.|.|..+..+.+.. ++|+|+|..|.++..++++.+.. .++.++...-.....+... ..+
T Consensus 66 ~l~~l~ikpg~~VLDlGcGtG~~~~~la~~~~~G~V~aVDiSp~mi~~a~~~a~~~-~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T 1fbn_A 66 GLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp TCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTSCCE
T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCEE
T ss_conf 57626879999999967977989999997589965999979989999999877644-87317984135864235666359
Q ss_pred CEEEEECC
Q ss_conf 24786225
Q gi|255764511|r 105 DGVVFDLG 112 (341)
Q Consensus 105 dgIl~DLG 112 (341)
|-++.|+-
T Consensus 145 d~i~~~~~ 152 (230)
T 1fbn_A 145 DVIYEDVA 152 (230)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
T ss_conf 99971012