HHsearch results for GI: 255764511 and protein with PDBid: 1nkv_A
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.72 E-value=0.00017 Score=48.33 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHH
Q ss_conf 33400986886608388888998376882889999974-890999809989999999985214--885277113278898
Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 (341)
Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~ 96 (341)
-.|-.+..+.+.+.++||..++|.=.|.|+.+..+.+. +.+++|+|.++.++..++++.+.. .+++.+.++.+.++
T Consensus 20 ~~~~~~~~l~~~l~l~pg~rVLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~~~~d~~~~- 98 (256)
T 1nkv_A 20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY- 98 (256)
T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-
T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC-
T ss_conf 8899999999970899999999985888889999998649989999898367789988677606554444113636450-
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 7653123324786
Q gi|255764511|r 97 DYVPDKGVDGVVF 109 (341)
Q Consensus 97 ~~l~~~~vdgIl~ 109 (341)
.....+|.|+.
T Consensus 99 --~~~~~fD~v~~ 109 (256)
T 1nkv_A 99 --VANEKCDVAAC 109 (256)
T ss_dssp --CCSSCEEEEEE
T ss_pred --CCCCCEEEEEE
T ss_conf --56784469999