HHsearch results for GI: 255764511 and protein with PDBid: 1nkv_A

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=97.72  E-value=0.00017  Score=48.33  Aligned_cols=87  Identities=15%  Similarity=0.212  Sum_probs=70.9

Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHH
Q ss_conf             33400986886608388888998376882889999974-890999809989999999985214--885277113278898
Q gi|255764511|r   20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ   96 (341)
Q Consensus        20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~   96 (341)
                      -.|-.+..+.+.+.++||..++|.=.|.|+.+..+.+. +.+++|+|.++.++..++++.+..  .+++.+.++.+.++ 
T Consensus        20 ~~~~~~~~l~~~l~l~pg~rVLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~~~~d~~~~-   98 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-   98 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-
T ss_pred             CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC-
T ss_conf             8899999999970899999999985888889999998649989999898367789988677606554444113636450-


Q ss_pred             HHHHHCCCCEEEE
Q ss_conf             7653123324786
Q gi|255764511|r   97 DYVPDKGVDGVVF  109 (341)
Q Consensus        97 ~~l~~~~vdgIl~  109 (341)
                        .....+|.|+.
T Consensus        99 --~~~~~fD~v~~  109 (256)
T 1nkv_A           99 --VANEKCDVAAC  109 (256)
T ss_dssp             --CCSSCEEEEEE
T ss_pred             --CCCCCEEEEEE
T ss_conf             --56784469999