Query gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Match_columns 341 No_of_seqs 132 out of 2545 Neff 5.3 Searched_HMMs 23785 Date Wed Jun 1 01:18:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764511.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1wg8_A Predicted S-adenosylmet 100.0 0 0 784.4 30.6 278 18-318 4-284 (285) 2 1m6y_A S-adenosyl-methyltransf 100.0 0 0 774.8 29.7 288 13-320 3-299 (301) 3 3mti_A RRNA methylase; SAM-dep 98.6 1.4E-07 6.1E-12 68.1 9.1 89 24-113 8-99 (185) 4 1vl5_A Unknown conserved prote 98.6 7.4E-07 3.1E-11 63.6 11.9 98 24-125 25-123 (260) 5 1dus_A MJ0882; hypothetical pr 98.6 2E-06 8.2E-11 60.8 14.0 86 25-113 41-129 (194) 6 3eey_A Putative rRNA methylase 98.4 1.2E-06 5E-11 62.3 8.9 85 24-114 15-104 (197) 7 2b25_A Hypothetical protein; s 98.4 8.4E-07 3.5E-11 63.2 7.8 88 25-112 94-196 (336) 8 3gdh_A Trimethylguanosine synt 98.3 3.1E-06 1.3E-10 59.6 9.4 78 33-113 75-154 (241) 9 2yxd_A Probable cobalt-precorr 98.3 1.2E-05 5.2E-10 55.7 11.4 87 26-115 25-112 (183) 10 3dtn_A Putative methyltransfer 98.2 1.9E-05 8.2E-10 54.4 11.2 95 24-124 31-128 (234) 11 2yvl_A TRMI protein, hypotheti 98.2 1.2E-05 5E-10 55.8 9.9 90 21-112 76-167 (248) 12 1i9g_A Hypothetical protein RV 98.2 9.3E-06 3.9E-10 56.5 9.0 89 21-111 84-179 (280) 13 1zx0_A Guanidinoacetate N-meth 98.2 1.1E-05 4.5E-10 56.1 8.9 93 20-112 38-137 (236) 14 1o54_A SAM-dependent O-methylt 98.2 1.9E-05 8E-10 54.5 10.2 86 24-112 100-190 (277) 15 1l3i_A Precorrin-6Y methyltran 98.1 2.7E-05 1.1E-09 53.4 10.4 81 27-109 24-106 (192) 16 3ll7_A Putative methyltransfer 98.1 1.2E-05 5.1E-10 55.7 8.6 78 35-112 92-172 (410) 17 1yb2_A Hypothetical protein TA 98.1 9.7E-06 4.1E-10 56.3 8.1 85 25-112 99-188 (275) 18 3dmg_A Probable ribosomal RNA 98.1 9.3E-05 3.9E-09 50.0 12.1 41 224-264 315-356 (381) 19 3dlc_A Putative S-adenosyl-L-m 98.1 4.2E-06 1.7E-10 58.7 5.1 105 16-125 24-131 (219) 20 2pwy_A TRNA (adenine-N(1)-)-me 98.0 5.3E-05 2.2E-09 51.6 9.5 92 19-112 79-175 (258) 21 1wzn_A SAM-dependent methyltra 98.0 4.9E-05 2.1E-09 51.8 9.3 83 24-109 29-111 (252) 22 2r6z_A UPF0341 protein in RSP 98.0 6E-05 2.5E-09 51.3 9.5 84 30-113 77-171 (258) 23 2yqz_A Hypothetical protein TT 98.0 1.8E-05 7.7E-10 54.5 6.8 115 18-136 16-140 (263) 24 3mb5_A SAM-dependent methyltra 97.9 0.00012 5E-09 49.3 10.4 89 21-112 78-171 (255) 25 1dl5_A Protein-L-isoaspartate 97.9 0.00012 5E-09 49.3 10.3 94 20-115 59-156 (317) 26 3dh0_A SAM dependent methyltra 97.9 4.5E-05 1.9E-09 52.0 7.9 86 24-111 25-114 (219) 27 3bkx_A SAM-dependent methyltra 97.9 2.1E-05 9E-10 54.1 6.1 110 24-135 31-157 (275) 28 1wy7_A Hypothetical protein PH 97.9 9.1E-05 3.8E-09 50.1 9.2 79 30-113 43-122 (207) 29 1xxl_A YCGJ protein; structura 97.9 2.5E-05 1.1E-09 53.7 6.1 106 25-134 10-121 (239) 30 2yxe_A Protein-L-isoaspartate 97.8 0.00011 4.6E-09 49.5 9.1 92 21-115 62-158 (215) 31 3bus_A REBM, methyltransferase 97.8 0.00014 5.9E-09 48.8 9.3 106 24-133 49-162 (273) 32 2p8j_A S-adenosylmethionine-de 97.8 3.1E-05 1.3E-09 53.1 5.6 87 20-108 7-94 (209) 33 2b9e_A NOL1/NOP2/SUN domain fa 97.8 0.00015 6.3E-09 48.7 9.0 89 28-116 94-187 (309) 34 3ajd_A Putative methyltransfer 97.8 0.00043 1.8E-08 45.7 11.3 89 28-116 75-169 (274) 35 3ccf_A Cyclopropane-fatty-acyl 97.8 2.5E-05 1E-09 53.7 4.8 97 21-126 42-138 (279) 36 3e05_A Precorrin-6Y C5,15-meth 97.7 0.00022 9.4E-09 47.5 9.2 66 28-93 32-100 (204) 37 1nkv_A Hypothetical protein YJ 97.7 0.00017 7.1E-09 48.3 8.5 87 20-109 20-109 (256) 38 2nxc_A L11 mtase, ribosomal pr 97.7 0.00037 1.5E-08 46.1 10.1 96 11-111 95-192 (254) 39 1ws6_A Methyltransferase; stru 97.7 0.00048 2E-08 45.4 10.6 93 20-112 22-119 (171) 40 3m70_A Tellurite resistance pr 97.7 0.00014 5.7E-09 48.9 7.7 88 20-110 104-191 (286) 41 1jg1_A PIMT;, protein-L-isoasp 97.7 0.00038 1.6E-08 46.1 9.7 92 21-115 76-170 (235) 42 3ege_A Putative methyltransfer 97.6 3.2E-05 1.3E-09 53.0 3.8 118 10-136 5-130 (261) 43 1vbf_A 231AA long hypothetical 97.6 0.00056 2.4E-08 44.9 10.1 92 20-115 54-146 (231) 44 3lpm_A Putative methyltransfer 97.6 0.00032 1.3E-08 46.6 8.9 80 34-113 47-129 (259) 45 2o57_A Putative sarcosine dime 97.6 0.00013 5.5E-09 49.0 6.9 99 24-126 70-171 (297) 46 2frn_A Hypothetical protein PH 97.6 0.00048 2E-08 45.4 9.4 93 19-114 107-203 (278) 47 3hnr_A Probable methyltransfer 97.6 0.00016 6.9E-09 48.4 6.9 91 25-123 34-124 (220) 48 3kkz_A Uncharacterized protein 97.6 0.00031 1.3E-08 46.6 8.2 94 27-125 36-133 (267) 49 1sqg_A SUN protein, FMU protei 97.5 0.00035 1.5E-08 46.3 8.0 89 28-117 238-329 (429) 50 2yxl_A PH0851 protein, 450AA l 97.5 0.00033 1.4E-08 46.5 7.8 88 28-115 251-342 (450) 51 1ve3_A Hypothetical protein PH 97.5 0.00045 1.9E-08 45.6 8.2 82 25-109 28-109 (227) 52 3m4x_A NOL1/NOP2/SUN family pr 97.5 0.0016 6.9E-08 42.0 10.9 87 28-115 97-187 (456) 53 1uwv_A 23S rRNA (uracil-5-)-me 97.5 0.00049 2.1E-08 45.3 8.2 90 21-110 271-363 (433) 54 2ipx_A RRNA 2'-O-methyltransfe 97.4 0.00069 2.9E-08 44.4 8.5 84 28-112 69-156 (233) 55 2esr_A Methyltransferase; stru 97.4 0.0028 1.2E-07 40.4 11.4 89 24-113 17-110 (177) 56 1ixk_A Methyltransferase; open 97.4 0.0016 6.6E-08 42.1 9.8 86 28-115 110-199 (315) 57 3fpf_A Mtnas, putative unchara 97.4 0.002 8.4E-08 41.4 10.3 81 24-108 110-193 (298) 58 1i1n_A Protein-L-isoaspartate 97.4 0.0019 7.9E-08 41.5 10.0 91 21-114 60-162 (226) 59 3m6w_A RRNA methylase; rRNA me 97.4 0.0029 1.2E-07 40.4 10.7 88 28-116 93-183 (464) 60 3f4k_A Putative methyltransfer 97.3 0.001 4.2E-08 43.3 8.2 92 20-113 29-124 (257) 61 3hm2_A Precorrin-6Y C5,15-meth 97.3 0.001 4.2E-08 43.3 8.1 70 24-93 13-85 (178) 62 3fzg_A 16S rRNA methylase; met 97.3 0.0027 1.1E-07 40.5 10.2 99 20-125 32-135 (200) 63 1nv8_A HEMK protein; class I a 97.3 0.0015 6.3E-08 42.2 8.8 92 23-115 110-204 (284) 64 1y8c_A S-adenosylmethionine-de 97.3 0.00054 2.3E-08 45.0 6.6 72 35-109 36-107 (246) 65 2pbf_A Protein-L-isoaspartate 97.3 0.003 1.3E-07 40.2 10.4 94 21-115 63-174 (227) 66 1xtp_A LMAJ004091AAA; SGPP, st 97.3 0.00097 4.1E-08 43.4 7.8 93 25-122 82-175 (254) 67 3g5t_A Trans-aconitate 3-methy 97.3 0.0017 7.2E-08 41.8 8.9 111 20-133 20-145 (299) 68 3g2m_A PCZA361.24; SAM-depende 97.3 0.00057 2.4E-08 44.9 6.5 80 26-109 73-156 (299) 69 3h2b_A SAM-dependent methyltra 97.3 0.00092 3.9E-08 43.6 7.5 88 24-119 29-116 (203) 70 2fhp_A Methylase, putative; al 97.3 0.0041 1.7E-07 39.4 10.9 90 24-113 30-126 (187) 71 2oyr_A UPF0341 protein YHIQ; a 97.2 0.001 4.3E-08 43.2 7.5 75 36-111 88-172 (258) 72 2ex4_A Adrenal gland protein A 97.2 0.00059 2.5E-08 44.8 6.3 86 33-122 76-163 (241) 73 2i6g_A Putative methyltransfer 97.2 0.00052 2.2E-08 45.2 5.9 80 27-109 22-102 (199) 74 1nw3_A Histone methyltransfera 97.2 0.0031 1.3E-07 40.1 9.9 77 20-96 139-227 (416) 75 2as0_A Hypothetical protein PH 97.2 0.0045 1.9E-07 39.1 10.3 80 34-113 215-299 (396) 76 2frx_A Hypothetical protein YE 97.2 0.0037 1.6E-07 39.7 9.8 86 32-118 113-202 (479) 77 3dr5_A Putative O-methyltransf 97.2 0.0047 2E-07 39.0 10.3 82 33-114 53-140 (221) 78 1wxx_A TT1595, hypothetical pr 97.2 0.0034 1.4E-07 39.9 9.6 84 31-114 204-290 (382) 79 1pjz_A Thiopurine S-methyltran 97.2 0.0018 7.5E-08 41.7 8.0 61 21-81 7-67 (203) 80 3bkw_A MLL3908 protein, S-aden 97.1 0.00093 3.9E-08 43.5 6.4 91 28-124 35-126 (243) 81 2kw5_A SLR1183 protein; struct 97.1 0.0016 6.6E-08 42.1 7.5 68 24-94 20-87 (202) 82 2ozv_A Hypothetical protein AT 97.1 0.0021 9E-08 41.2 8.2 89 20-111 23-123 (260) 83 3a27_A TYW2, uncharacterized p 97.1 0.0044 1.8E-07 39.2 9.6 88 22-112 104-195 (272) 84 3bxo_A N,N-dimethyltransferase 97.1 0.0014 6.1E-08 42.3 7.0 76 26-109 31-106 (239) 85 3d2l_A SAM-dependent methyltra 97.1 0.0016 6.7E-08 42.0 7.2 84 20-109 19-102 (243) 86 1ri5_A MRNA capping enzyme; me 97.0 0.0019 7.8E-08 41.6 7.0 59 33-91 61-122 (298) 87 1g8a_A Fibrillarin-like PRE-rR 97.0 0.0022 9.3E-08 41.1 7.4 87 24-111 61-151 (227) 88 3g5l_A Putative S-adenosylmeth 97.0 0.0027 1.1E-07 40.6 7.8 79 27-109 35-114 (253) 89 3l8d_A Methyltransferase; stru 97.0 0.00058 2.5E-08 44.8 4.4 85 35-125 52-136 (242) 90 1xva_A Glycine N-methyltransfe 97.0 0.0059 2.5E-07 38.3 9.5 86 24-109 44-135 (292) 91 3bt7_A TRNA (uracil-5-)-methyl 97.0 0.011 4.8E-07 36.5 10.9 78 21-99 199-277 (369) 92 3mgg_A Methyltransferase; NYSG 97.0 0.0049 2.1E-07 38.9 9.0 96 24-123 25-123 (276) 93 3evz_A Methyltransferase; NYSG 97.0 0.0033 1.4E-07 40.0 7.9 81 29-110 48-130 (230) 94 2qm3_A Predicted methyltransfe 97.0 0.0029 1.2E-07 40.4 7.5 80 34-113 170-251 (373) 95 3e8s_A Putative SAM dependent 96.9 0.002 8.3E-08 41.4 6.6 61 20-80 36-96 (227) 96 3m33_A Uncharacterized protein 96.9 0.002 8.3E-08 41.4 6.4 61 19-79 31-91 (226) 97 3hvi_A Catechol O-methyltransf 96.9 0.013 5.3E-07 36.2 10.4 80 36-115 58-146 (221) 98 2avn_A Ubiquinone/menaquinone 96.9 0.0013 5.6E-08 42.5 5.4 84 34-125 52-135 (260) 99 1r18_A Protein-L-isoaspartate( 96.9 0.0077 3.2E-07 37.6 9.2 92 21-115 67-175 (227) 100 2p35_A Trans-aconitate 2-methy 96.9 0.0019 8.1E-08 41.5 6.0 93 25-126 22-116 (259) 101 2p7i_A Hypothetical protein; p 96.9 0.0023 9.5E-08 41.0 6.3 96 19-125 28-123 (250) 102 1qam_A ERMC' methyltransferase 96.9 0.0067 2.8E-07 38.0 8.7 97 20-119 14-112 (244) 103 3gru_A Dimethyladenosine trans 96.9 0.0071 3E-07 37.8 8.8 96 20-118 34-131 (295) 104 2fk8_A Methoxy mycolic acid sy 96.8 0.012 4.9E-07 36.4 9.6 86 23-113 77-165 (318) 105 1im8_A YECO; methyltransferase 96.8 0.0066 2.8E-07 38.0 8.1 99 22-124 42-148 (244) 106 3ofk_A Nodulation protein S; N 96.8 0.0038 1.6E-07 39.6 6.8 75 31-109 46-120 (216) 107 3lcc_A Putative methyl chlorid 96.7 0.002 8.6E-08 41.3 5.3 80 25-108 56-137 (235) 108 3c0k_A UPF0064 protein YCCW; P 96.7 0.015 6.1E-07 35.8 9.6 77 36-112 220-302 (396) 109 3ocj_A Putative exported prote 96.7 0.0029 1.2E-07 40.4 5.9 81 26-111 110-195 (305) 110 2igt_A SAM dependent methyltra 96.7 0.018 7.5E-07 35.2 10.0 96 16-111 126-233 (332) 111 1fbn_A MJ fibrillarin homologu 96.7 0.0068 2.9E-07 37.9 7.7 84 28-112 66-152 (230) 112 3gu3_A Methyltransferase; alph 96.7 0.0047 2E-07 39.0 6.8 88 33-125 19-109 (284) 113 2gpy_A O-methyltransferase; st 96.7 0.015 6.3E-07 35.7 9.3 99 18-116 32-139 (233) 114 2vdw_A Vaccinia virus capping 96.7 0.0058 2.4E-07 38.4 7.2 63 21-83 31-96 (302) 115 3grz_A L11 mtase, ribosomal pr 96.6 0.019 7.8E-07 35.1 9.6 94 12-110 36-132 (205) 116 3id6_C Fibrillarin-like rRNA/T 96.6 0.0094 4E-07 37.0 8.0 84 29-113 69-156 (232) 117 2fca_A TRNA (guanine-N(7)-)-me 96.6 0.023 9.5E-07 34.6 10.0 77 36-112 38-117 (213) 118 3ggd_A SAM-dependent methyltra 96.6 0.009 3.8E-07 37.2 7.9 61 34-96 54-114 (245) 119 3lcv_B Sisomicin-gentamicin re 96.6 0.0046 1.9E-07 39.1 6.3 85 35-124 131-217 (281) 120 3jwh_A HEN1; methyltransferase 96.6 0.0085 3.6E-07 37.3 7.6 86 24-111 17-110 (217) 121 2b3t_A Protein methyltransfera 96.6 0.023 9.8E-07 34.5 9.8 69 23-92 97-168 (276) 122 1u2z_A Histone-lysine N-methyl 96.6 0.011 4.5E-07 36.7 8.1 70 14-83 220-291 (433) 123 3jwg_A HEN1, methyltransferase 96.6 0.0086 3.6E-07 37.3 7.6 58 24-81 17-76 (219) 124 2b78_A Hypothetical protein SM 96.5 0.019 7.9E-07 35.1 9.2 77 34-110 210-292 (385) 125 1ne2_A Hypothetical protein TA 96.5 0.0093 3.9E-07 37.1 7.5 74 31-113 46-120 (200) 126 1zq9_A Probable dimethyladenos 96.5 0.014 5.8E-07 36.0 8.3 91 20-114 12-104 (285) 127 3c3p_A Methyltransferase; NP_9 96.5 0.015 6.5E-07 35.7 8.4 95 19-115 35-138 (210) 128 3bgv_A MRNA CAP guanine-N7 met 96.5 0.0096 4E-07 37.0 7.3 61 21-81 17-80 (313) 129 2yx1_A Hypothetical protein MJ 96.5 0.011 4.6E-07 36.6 7.6 73 21-94 179-254 (336) 130 3hem_A Cyclopropane-fatty-acyl 96.5 0.036 1.5E-06 33.3 10.2 81 24-109 60-143 (302) 131 3cgg_A SAM-dependent methyltra 96.5 0.0072 3E-07 37.8 6.6 52 27-79 38-89 (195) 132 3lbf_A Protein-L-isoaspartate 96.5 0.032 1.4E-06 33.6 9.9 93 20-115 61-155 (210) 133 3kr9_A SAM-dependent methyltra 96.5 0.026 1.1E-06 34.2 9.4 86 25-114 6-96 (225) 134 3lec_A NADB-rossmann superfami 96.4 0.021 8.8E-07 34.8 8.8 93 19-115 6-103 (230) 135 1nt2_A Fibrillarin-like PRE-rR 96.4 0.019 7.8E-07 35.1 8.5 79 32-111 53-134 (210) 136 3iv6_A Putative Zn-dependent a 96.4 0.018 7.7E-07 35.2 8.5 83 27-111 35-118 (261) 137 3ou2_A SAM-dependent methyltra 96.4 0.0076 3.2E-07 37.6 6.5 79 33-119 43-121 (218) 138 2f8l_A Hypothetical protein LM 96.4 0.013 5.5E-07 36.1 7.4 87 24-113 117-211 (344) 139 2pxx_A Uncharacterized protein 96.4 0.0061 2.6E-07 38.2 5.7 72 34-108 40-112 (215) 140 1p91_A Ribosomal RNA large sub 96.3 0.01 4.4E-07 36.7 6.8 84 20-109 66-154 (269) 141 3frh_A 16S rRNA methylase; met 96.3 0.023 9.7E-07 34.5 8.3 88 31-124 100-187 (253) 142 1yzh_A TRNA (guanine-N(7)-)-me 96.3 0.019 8.1E-07 35.0 7.8 75 36-110 41-118 (214) 143 3gnl_A Uncharacterized protein 96.2 0.074 3.1E-06 31.3 11.3 102 24-130 11-117 (244) 144 1boo_A Protein (N-4 cytosine-s 96.2 0.014 5.9E-07 35.9 6.9 27 22-48 16-46 (323) 145 2gb4_A Thiopurine S-methyltran 96.2 0.025 1E-06 34.3 8.1 60 21-80 53-112 (252) 146 1qyr_A KSGA, high level kasuga 96.2 0.011 4.4E-07 36.7 6.2 75 21-96 6-80 (252) 147 3i9f_A Putative type 11 methyl 96.2 0.0039 1.6E-07 39.5 4.0 52 27-78 8-59 (170) 148 2pjd_A Ribosomal RNA small sub 96.2 0.01 4.3E-07 36.8 6.0 80 28-111 188-269 (343) 149 1x19_A CRTF-related protein; m 96.1 0.019 7.9E-07 35.1 7.2 68 25-93 179-250 (359) 150 1kpg_A CFA synthase;, cyclopro 96.1 0.045 1.9E-06 32.6 9.1 81 24-109 52-135 (287) 151 3dxy_A TRNA (guanine-N(7)-)-me 96.1 0.069 2.9E-06 31.4 10.0 75 35-109 33-111 (218) 152 3dli_A Methyltransferase; PSI- 96.0 0.045 1.9E-06 32.6 8.6 68 35-109 40-107 (240) 153 3e23_A Uncharacterized protein 95.9 0.045 1.9E-06 32.7 8.4 58 20-79 29-86 (211) 154 2zig_A TTHA0409, putative modi 95.9 0.042 1.7E-06 32.9 8.2 15 24-38 25-39 (297) 155 3p2e_A 16S rRNA methylase; met 95.9 0.019 7.9E-07 35.1 6.3 92 27-119 15-113 (225) 156 2gs9_A Hypothetical protein TT 95.9 0.0054 2.3E-07 38.6 3.5 82 34-125 34-115 (211) 157 1yub_A Ermam, rRNA methyltrans 95.8 0.0013 5.3E-08 42.7 -0.1 97 20-119 13-111 (245) 158 1eg2_A Modification methylase 95.8 0.036 1.5E-06 33.3 7.3 46 35-80 241-286 (319) 159 1xj5_A Spermidine synthase 1; 95.6 0.047 2E-06 32.5 7.4 79 32-112 117-203 (334) 160 2r3s_A Uncharacterized protein 95.6 0.035 1.5E-06 33.4 6.8 71 36-110 165-239 (335) 161 2fpo_A Methylase YHHF; structu 95.6 0.11 4.4E-06 30.2 9.2 90 24-114 40-133 (202) 162 2fyt_A Protein arginine N-meth 95.5 0.066 2.8E-06 31.6 8.0 80 32-114 60-142 (340) 163 1qzz_A RDMB, aclacinomycin-10- 95.5 0.08 3.3E-06 31.0 8.4 28 227-254 265-292 (374) 164 1uir_A Polyamine aminopropyltr 95.5 0.066 2.8E-06 31.6 7.9 95 14-112 58-160 (314) 165 3mcz_A O-methyltransferase; ad 95.4 0.06 2.5E-06 31.8 7.5 29 227-255 265-293 (352) 166 2okc_A Type I restriction enzy 95.3 0.029 1.2E-06 33.9 5.6 87 24-113 159-263 (445) 167 2vdv_E TRNA (guanine-N(7)-)-me 95.3 0.082 3.5E-06 31.0 7.9 77 34-110 47-135 (246) 168 2h1r_A Dimethyladenosine trans 95.3 0.052 2.2E-06 32.2 6.8 95 20-118 26-122 (299) 169 2jjq_A Uncharacterized RNA met 95.3 0.16 6.5E-06 29.2 9.2 56 22-80 279-334 (425) 170 2ih2_A Modification methylase 95.2 0.013 5.4E-07 36.2 3.3 82 23-115 26-110 (421) 171 2h00_A Methyltransferase 10 do 95.1 0.082 3.4E-06 31.0 7.4 90 24-113 51-150 (254) 172 1tw3_A COMT, carminomycin 4-O- 95.0 0.094 4E-06 30.6 7.5 30 227-256 266-295 (360) 173 3cc8_A Putative methyltransfer 95.0 0.038 1.6E-06 33.1 5.4 54 24-78 21-74 (230) 174 3c3y_A Pfomt, O-methyltransfer 94.8 0.23 9.9E-06 28.0 9.4 99 26-125 59-168 (237) 175 3g07_A 7SK snRNA methylphospha 94.8 0.059 2.5E-06 31.9 5.9 47 35-81 45-93 (292) 176 2a14_A Indolethylamine N-methy 94.7 0.03 1.3E-06 33.7 4.3 61 25-85 42-105 (263) 177 1sui_A Caffeoyl-COA O-methyltr 94.6 0.25 1.1E-05 27.8 8.8 81 36-116 79-169 (247) 178 3ckk_A TRNA (guanine-N(7)-)-me 94.5 0.13 5.7E-06 29.6 7.2 75 36-110 46-130 (235) 179 3bwc_A Spermidine synthase; SA 94.5 0.19 8E-06 28.6 7.9 94 15-112 77-178 (304) 180 2pt6_A Spermidine synthase; tr 94.4 0.2 8.3E-06 28.5 7.9 93 15-111 98-197 (321) 181 3i53_A O-methyltransferase; CO 94.4 0.064 2.7E-06 31.6 5.3 70 23-93 156-229 (332) 182 2ip2_A Probable phenazine-spec 94.4 0.11 4.6E-06 30.2 6.4 79 25-109 157-239 (334) 183 2b2c_A Spermidine synthase; be 94.3 0.3 1.3E-05 27.3 8.8 78 32-111 105-189 (314) 184 3ftd_A Dimethyladenosine trans 94.3 0.15 6.2E-06 29.3 7.0 91 20-114 15-106 (249) 185 3gwz_A MMCR; methyltransferase 94.2 0.32 1.3E-05 27.2 8.9 25 227-251 285-309 (369) 186 3gjy_A Spermidine synthase; AP 94.2 0.32 1.3E-05 27.2 9.7 76 36-111 89-167 (317) 187 2i7c_A Spermidine synthase; tr 94.2 0.24 1E-05 28.0 7.8 86 24-111 67-159 (283) 188 2ift_A Putative methylase HI07 94.0 0.35 1.5E-05 26.9 8.7 94 22-115 37-137 (201) 189 1or8_A Protein arginine N-meth 93.9 0.12 5.1E-06 29.9 6.0 76 33-111 54-132 (340) 190 2avd_A Catechol-O-methyltransf 93.9 0.36 1.5E-05 26.8 9.3 96 35-131 68-172 (229) 191 1vlm_A SAM-dependent methyltra 93.8 0.057 2.4E-06 32.0 4.1 79 20-110 31-109 (219) 192 1mjf_A Spermidine synthase; sp 93.8 0.38 1.6E-05 26.6 8.7 78 31-111 71-160 (281) 193 2qe6_A Uncharacterized protein 93.7 0.15 6.3E-06 29.3 6.1 76 25-101 65-146 (274) 194 3dp7_A SAM-dependent methyltra 93.6 0.39 1.6E-05 26.6 8.1 32 226-257 264-295 (363) 195 2o07_A Spermidine synthase; st 93.6 0.29 1.2E-05 27.4 7.4 94 15-112 77-177 (304) 196 3opn_A Putative hemolysin; str 93.4 0.1 4.3E-06 30.4 4.8 89 24-116 24-116 (232) 197 1iy9_A Spermidine synthase; ro 93.4 0.38 1.6E-05 26.6 7.7 94 14-111 56-156 (275) 198 1g6q_1 HnRNP arginine N-methyl 93.3 0.19 8.2E-06 28.5 6.1 78 33-113 35-115 (328) 199 2aot_A HMT, histamine N-methyl 93.0 0.51 2.1E-05 25.8 9.1 96 28-125 43-155 (292) 200 1inl_A Spermidine synthase; be 93.0 0.47 2E-05 26.0 7.7 80 31-112 86-172 (296) 201 3duw_A OMT, O-methyltransferas 92.9 0.53 2.2E-05 25.7 11.8 81 36-116 58-146 (223) 202 1ej0_A FTSJ; methyltransferase 92.8 0.54 2.3E-05 25.6 14.1 78 25-112 10-97 (180) 203 2i62_A Nicotinamide N-methyltr 92.8 0.084 3.5E-06 30.9 3.6 61 25-85 43-106 (265) 204 3b3j_A Histone-arginine methyl 92.7 0.41 1.7E-05 26.4 7.1 75 33-111 155-232 (480) 205 1i4w_A Mitochondrial replicati 92.5 0.59 2.5E-05 25.4 9.4 75 20-96 36-118 (353) 206 3b3f_A Histone-arginine methyl 92.5 0.5 2.1E-05 25.9 7.3 76 32-111 42-120 (341) 207 3adn_A Spermidine synthase; am 92.5 0.17 7.2E-06 28.9 5.0 94 14-111 64-165 (294) 208 2ixa_A Alpha-N-acetylgalactosa 91.6 0.64 2.7E-05 25.2 7.0 80 43-123 24-110 (444) 209 2hnk_A SAM-dependent O-methylt 91.2 0.82 3.5E-05 24.5 9.8 81 36-117 60-161 (239) 210 2ar0_A M.ecoki, type I restric 90.5 0.42 1.8E-05 26.4 5.2 90 24-114 157-272 (541) 211 3htx_A HEN1; HEN1, small RNA m 90.5 0.67 2.8E-05 25.1 6.2 55 26-80 711-768 (950) 212 3fut_A Dimethyladenosine trans 90.1 1 4.3E-05 23.9 8.5 95 20-118 31-127 (271) 213 3ctm_A Carbonyl reductase; alc 88.9 0.93 3.9E-05 24.2 6.0 96 17-114 15-122 (279) 214 3ldu_A Putative methylase; str 88.1 1.4 5.9E-05 23.0 8.8 58 19-78 16-84 (385) 215 1xxl_A YCGJ protein; structura 88.1 0.37 1.6E-05 26.7 3.5 41 226-266 101-141 (239) 216 3cbg_A O-methyltransferase; cy 87.9 1.5 6.2E-05 22.9 9.4 79 36-116 73-161 (232) 217 3dou_A Ribosomal RNA large sub 87.6 1.5 6.4E-05 22.8 7.1 78 25-112 13-100 (191) 218 2pxx_A Uncharacterized protein 86.7 0.49 2.1E-05 25.9 3.5 32 225-256 135-166 (215) 219 3khk_A Type I restriction-modi 86.4 1.8 7.4E-05 22.3 6.2 56 25-81 234-306 (544) 220 2jah_A Clavulanic acid dehydro 85.8 1.9 7.9E-05 22.2 7.2 72 44-115 13-96 (247) 221 2qfm_A Spermine synthase; sper 85.7 1.9 8.1E-05 22.1 9.1 40 40-79 192-232 (364) 222 3gcz_A Polyprotein; flavivirus 85.6 0.28 1.2E-05 27.5 1.8 88 24-115 78-168 (282) 223 2wa2_A Non-structural protein 85.5 0.36 1.5E-05 26.8 2.3 88 24-116 70-161 (276) 224 3cvo_A Methyltransferase-like 85.1 1.7 7.1E-05 22.5 5.6 72 1-81 2-74 (202) 225 3hp7_A Hemolysin, putative; st 84.2 1.7 7.2E-05 22.4 5.3 90 24-117 72-165 (291) 226 2edu_A Kinesin-like protein KI 83.1 0.45 1.9E-05 26.2 1.9 45 144-194 30-75 (98) 227 3i9f_A Putative type 11 methyl 81.5 0.63 2.6E-05 25.3 2.2 29 224-252 87-115 (170) 228 1yb1_A 17-beta-hydroxysteroid 80.7 3 0.00013 20.8 7.2 78 36-114 30-119 (272) 229 3giw_A Protein of unknown func 80.3 3.1 0.00013 20.8 6.4 77 25-101 66-149 (277) 230 1zem_A Xylitol dehydrogenase; 80.0 3.2 0.00013 20.7 8.3 71 44-114 13-95 (262) 231 3lkd_A Type I restriction-modi 79.8 3.2 0.00014 20.7 6.4 82 33-114 218-308 (542) 232 3iht_A S-adenosyl-L-methionine 79.6 3.3 0.00014 20.6 6.0 85 24-115 29-118 (174) 233 3imf_A Short chain dehydrogena 79.4 3.3 0.00014 20.6 7.8 72 43-114 11-94 (257) 234 2dul_A N(2),N(2)-dimethylguano 79.1 3.4 0.00014 20.5 10.4 96 35-133 46-160 (378) 235 3lst_A CALO1 methyltransferase 78.9 1.8 7.4E-05 22.4 3.8 26 226-251 263-288 (348) 236 2px2_A Genome polyprotein [con 78.9 0.5 2.1E-05 25.9 0.9 88 24-115 61-151 (269) 237 2oxt_A Nucleoside-2'-O-methylt 78.4 2.3 9.5E-05 21.7 4.2 134 24-165 62-206 (265) 238 3evf_A RNA-directed RNA polyme 77.8 0.34 1.4E-05 27.0 -0.2 43 25-67 63-111 (277) 239 2cmg_A Spermidine synthase; tr 77.6 0.4 1.7E-05 26.5 0.2 76 31-110 68-146 (262) 240 3ftp_A 3-oxoacyl-[acyl-carrier 77.3 3.8 0.00016 20.2 7.6 78 36-114 27-116 (270) 241 1geg_A Acetoin reductase; SDR 75.8 4.2 0.00018 19.9 7.3 71 44-114 8-90 (256) 242 3k0b_A Predicted N6-adenine-sp 75.3 4.3 0.00018 19.8 8.2 61 16-78 21-91 (393) 243 2rhc_B Actinorhodin polyketide 74.9 4.4 0.00019 19.8 7.2 77 36-114 21-110 (277) 244 1o9g_A RRNA methyltransferase; 74.4 4.6 0.00019 19.7 6.8 61 20-80 30-99 (250) 245 2ae2_A Protein (tropinone redu 69.9 5.8 0.00024 19.0 5.6 72 43-114 14-98 (260) 246 2zfu_A Nucleomethylin, cerebra 69.3 2.6 0.00011 21.3 2.7 26 227-252 129-154 (215) 247 3eld_A Methyltransferase; flav 69.0 0.79 3.3E-05 24.6 -0.1 43 24-66 69-117 (300) 248 2p41_A Type II methyltransfera 68.9 3.3 0.00014 20.6 3.1 42 25-66 71-114 (305) 249 3c1a_A Putative oxidoreductase 68.7 4.7 0.0002 19.6 3.9 67 49-127 24-92 (315) 250 3lkz_A Non-structural protein 67.5 3 0.00012 20.9 2.6 86 24-117 82-174 (321) 251 3ip3_A Oxidoreductase, putativ 67.5 2.3 9.8E-05 21.6 2.1 73 43-123 6-86 (337) 252 3h7a_A Short chain dehydrogena 67.0 6.6 0.00028 18.6 6.7 81 34-114 5-94 (252) 253 2yui_A Anamorsin; cytokine-ind 66.1 2.9 0.00012 20.9 2.4 24 229-252 84-107 (182) 254 3ndi_A Methyltransferase; S-ad 66.0 6.9 0.00029 18.5 7.0 62 16-77 87-148 (416) 255 3dhn_A NAD-dependent epimerase 62.9 7.6 0.00032 18.2 4.0 64 44-114 13-78 (227) 256 2bm8_A Cephalosporin hydroxyla 62.8 7 0.00029 18.5 3.8 85 23-114 71-163 (236) 257 3ec7_A Putative dehydrogenase; 61.7 8.2 0.00035 18.0 4.8 78 49-134 37-121 (357) 258 1db3_A GDP-mannose 4,6-dehydra 61.6 8.3 0.00035 18.0 5.6 66 50-115 16-90 (372) 259 1ae1_A Tropinone reductase-I; 61.0 8.5 0.00036 17.9 5.8 77 36-113 20-109 (273) 260 3m1a_A Putative dehydrogenase; 59.7 8.9 0.00038 17.8 6.0 69 43-114 10-90 (281) 261 2py6_A Methyltransferase FKBM; 59.4 9 0.00038 17.8 7.0 29 153-182 171-199 (409) 262 2zat_A Dehydrogenase/reductase 59.2 9.1 0.00038 17.7 8.1 80 34-114 11-102 (260) 263 2c07_A 3-oxoacyl-(acyl-carrier 58.4 9.4 0.00039 17.7 7.8 78 36-114 43-132 (285) 264 2duy_A Competence protein come 57.7 1.4 6E-05 22.9 -0.5 38 148-194 21-58 (75) 265 1rpn_A GDP-mannose 4,6-dehydra 54.8 11 0.00045 17.3 3.9 80 38-119 16-102 (335) 266 1udb_A Epimerase, UDP-galactos 54.7 11 0.00045 17.3 4.0 79 52-130 18-102 (338) 267 2z1m_A GDP-D-mannose dehydrata 54.3 11 0.00046 17.2 5.6 76 39-116 6-88 (345) 268 1h6d_A Precursor form of gluco 54.2 11 0.00046 17.2 5.2 88 43-135 87-185 (433) 269 2plw_A Ribosomal RNA methyltra 53.5 11 0.00047 17.2 8.0 44 25-68 10-58 (201) 270 2p2s_A Putative oxidoreductase 53.4 10 0.00043 17.4 3.3 78 49-135 15-101 (336) 271 3lyl_A 3-oxoacyl-(acyl-carrier 52.0 12 0.0005 17.0 8.1 71 44-114 11-93 (247) 272 3k6g_A Telomeric repeat-bindin 51.1 7 0.00029 18.5 2.2 30 145-174 66-95 (111) 273 1fmc_A 7 alpha-hydroxysteroid 50.7 12 0.00052 16.9 8.1 72 43-114 16-99 (255) 274 3gaf_A 7-alpha-hydroxysteroid 50.7 12 0.00052 16.9 8.1 77 36-114 11-100 (256) 275 1t2a_A GDP-mannose 4,6 dehydra 49.4 12 0.00052 16.9 3.3 85 30-114 17-113 (375) 276 3h5i_A Response regulator/sens 49.3 13 0.00055 16.7 7.0 68 58-125 5-76 (140) 277 1hdo_A Biliverdin IX beta redu 47.9 14 0.00058 16.6 4.0 67 41-113 9-77 (206) 278 3cxt_A Dehydrogenase with diff 47.5 14 0.00059 16.6 8.7 78 36-114 33-122 (291) 279 2b4a_A BH3024; 10175646, struc 45.7 15 0.00062 16.4 6.8 65 59-123 16-83 (138) 280 2nut_A Protein transport prote 45.6 15 0.00063 16.4 3.9 20 144-163 514-533 (769) 281 1xkq_A Short-chain reductase f 44.7 15 0.00065 16.3 7.9 73 43-115 11-98 (280) 282 2b4q_A Rhamnolipids biosynthes 44.3 16 0.00066 16.2 7.1 77 36-114 28-116 (276) 283 2j48_A Two-component sensor ki 43.0 16 0.00069 16.1 6.1 66 58-124 1-69 (119) 284 3ggo_A Prephenate dehydrogenas 42.5 17 0.0007 16.1 7.7 70 46-115 42-131 (314) 285 1f0y_A HCDH, L-3-hydroxyacyl-C 41.8 17 0.00072 16.0 3.3 31 50-80 30-60 (302) 286 1xg5_A ARPG836; short chain de 41.4 17 0.00073 15.9 7.1 78 36-114 31-122 (279) 287 3n74_A 3-ketoacyl-(acyl-carrie 40.7 18 0.00074 15.9 7.6 75 36-114 8-94 (261) 288 3m2t_A Probable dehydrogenase; 40.5 18 0.00075 15.9 4.1 76 50-134 21-102 (359) 289 2dpo_A L-gulonate 3-dehydrogen 40.5 18 0.00075 15.9 3.2 31 49-79 18-50 (319) 290 1vl8_A Gluconate 5-dehydrogena 40.4 18 0.00075 15.8 7.0 89 19-114 8-110 (267) 291 2o3f_A Putative HTH-type trans 40.0 18 0.00076 15.8 4.4 74 149-226 2-80 (111) 292 3cea_A MYO-inositol 2-dehydrog 39.6 18 0.00077 15.8 4.6 61 45-113 14-81 (346) 293 1h5q_A NADP-dependent mannitol 38.9 19 0.00079 15.7 5.2 75 40-114 16-103 (265) 294 1nff_A Putative oxidoreductase 38.8 19 0.0008 15.7 6.5 68 44-114 13-92 (260) 295 1wma_A Carbonyl reductase [NAD 37.8 20 0.00082 15.6 6.9 72 44-115 10-94 (276) 296 1xhl_A Short-chain dehydrogena 37.5 20 0.00083 15.6 7.7 93 20-114 10-117 (297) 297 1s5l_U Photosystem II 12 kDa e 37.0 3.5 0.00015 20.5 -1.2 39 147-194 56-94 (134) 298 3o38_A Short chain dehydrogena 35.7 21 0.00089 15.4 7.3 78 36-115 21-113 (266) 299 2bgk_A Rhizome secoisolaricire 35.7 21 0.00089 15.4 7.0 77 36-114 15-103 (278) 300 3bz1_U Photosystem II 12 kDa e 35.0 4.5 0.00019 19.7 -0.8 38 148-194 27-64 (104) 301 2i5h_A Hypothetical protein AF 34.8 22 0.00092 15.3 2.7 27 169-195 141-167 (205) 302 1xq1_A Putative tropinone redu 34.4 22 0.00093 15.2 7.5 78 36-114 13-103 (266) 303 3o7i_A OHCU decarboxylase; lya 34.4 22 0.00093 15.2 4.8 51 144-200 26-76 (189) 304 1spx_A Short-chain reductase f 34.3 22 0.00094 15.2 7.8 73 43-115 11-98 (278) 305 3ioy_A Short-chain dehydrogena 33.9 23 0.00095 15.2 6.7 72 43-114 13-98 (319) 306 3mog_A Probable 3-hydroxybutyr 33.5 23 0.00096 15.2 3.2 32 49-80 17-50 (483) 307 3lls_A 3-ketoacyl-(acyl-carrie 33.4 7.8 0.00033 18.2 0.2 12 57-68 257-268 (475) 308 3cg0_A Response regulator rece 33.4 23 0.00097 15.1 6.5 56 58-113 9-64 (140) 309 2gdz_A NAD+-dependent 15-hydro 32.8 24 0.00099 15.1 7.2 73 43-115 12-98 (267) 310 2qr3_A Two-component system re 32.0 24 0.001 15.0 6.8 55 58-113 3-57 (140) 311 2glx_A 1,5-anhydro-D-fructose 31.7 25 0.001 15.0 5.2 80 45-133 6-95 (332) 312 3cg4_A Response regulator rece 31.5 25 0.001 14.9 6.9 57 57-114 6-62 (142) 313 1k2w_A Sorbitol dehydrogenase; 31.3 25 0.001 14.9 6.3 68 44-114 11-90 (256) 314 1iy8_A Levodione reductase; ox 31.0 25 0.0011 14.9 7.0 78 36-114 12-103 (267) 315 2nwq_A Probable short-chain de 30.7 25 0.0011 14.9 7.9 75 39-114 24-108 (272) 316 1zg3_A Isoflavanone 4'-O-methy 30.5 26 0.0011 14.8 3.4 36 225-260 266-307 (358) 317 3js3_A 3-dehydroquinate dehydr 30.4 18 0.00074 15.9 1.6 26 65-90 28-54 (258) 318 2qq5_A DHRS1, dehydrogenase/re 30.1 26 0.0011 14.8 9.7 86 34-120 2-100 (260) 319 1rkx_A CDP-glucose-4,6-dehydra 30.0 26 0.0011 14.8 3.5 76 38-114 11-91 (357) 320 2wsb_A Galactitol dehydrogenas 29.9 26 0.0011 14.8 7.4 76 36-114 10-96 (254) 321 1s8n_A Putative antiterminator 29.4 27 0.0011 14.7 6.8 55 60-114 15-69 (205) 322 1m2o_A SEC23, protein transpor 29.3 27 0.0011 14.7 3.9 21 144-164 516-536 (768) 323 3g89_A Ribosomal RNA small sub 28.8 27 0.0012 14.7 8.7 29 224-252 159-187 (249) 324 2d9o_A DNAJ (HSP40) homolog, s 28.8 19 0.00079 15.7 1.5 20 149-168 27-46 (100) 325 1kjq_A GART 2, phosphoribosylg 28.8 27 0.0012 14.7 2.5 64 45-114 17-85 (391) 326 1nri_A Hypothetical protein HI 28.8 27 0.0012 14.7 3.4 26 141-166 207-232 (306) 327 1z45_A GAL10 bifunctional prot 28.6 28 0.0012 14.6 4.1 69 38-109 13-90 (699) 328 2rdm_A Response regulator rece 28.1 28 0.0012 14.6 6.9 66 58-123 5-74 (132) 329 1zcj_A Peroxisomal bifunctiona 28.0 28 0.0012 14.6 3.1 31 49-79 49-81 (463) 330 2cfc_A 2-(R)-hydroxypropyl-COM 28.0 28 0.0012 14.6 6.6 72 44-115 8-92 (250) 331 2pd4_A Enoyl-[acyl-carrier-pro 27.7 29 0.0012 14.5 6.9 65 49-114 23-95 (275) 332 1xhf_A DYE resistance, aerobic 27.5 29 0.0012 14.5 6.3 56 58-114 3-58 (123) 333 3guy_A Short-chain dehydrogena 27.3 29 0.0012 14.5 6.2 60 51-113 18-82 (230) 334 3mz0_A Inositol 2-dehydrogenas 27.3 29 0.0012 14.5 5.8 73 45-125 8-87 (344) 335 3evn_A Oxidoreductase, GFO/IDH 27.1 27 0.0011 14.7 2.0 76 50-134 20-101 (329) 336 3nyw_A Putative oxidoreductase 27.0 30 0.0012 14.4 6.7 72 43-114 12-98 (250) 337 2pnf_A 3-oxoacyl-[acyl-carrier 26.9 30 0.0012 14.4 7.8 78 36-114 6-96 (248) 338 3bfp_A Acetyltransferase; LEFT 26.2 30 0.0013 14.4 2.2 23 45-67 9-35 (194) 339 1qkk_A DCTD, C4-dicarboxylate 26.2 30 0.0013 14.4 6.2 57 57-114 2-58 (155) 340 1w6u_A 2,4-dienoyl-COA reducta 25.7 31 0.0013 14.3 7.6 78 36-114 25-115 (302) 341 2rh8_A Anthocyanidin reductase 25.3 23 0.00098 15.1 1.4 80 38-117 11-94 (338) 342 2dwc_A PH0318, 433AA long hypo 25.2 32 0.0013 14.2 5.5 64 45-114 25-93 (433) 343 1yxm_A Pecra, peroxisomal tran 25.1 32 0.0013 14.2 7.2 71 44-114 24-111 (303) 344 1id1_A Putative potassium chan 24.9 32 0.0014 14.2 7.3 66 45-112 9-80 (153) 345 2qzj_A Two-component response 24.6 33 0.0014 14.2 6.2 57 58-115 4-60 (136) 346 3hdv_A Response regulator; PSI 24.5 33 0.0014 14.2 6.9 59 56-114 5-63 (136) 347 3gvc_A Oxidoreductase, probabl 24.4 33 0.0014 14.1 7.1 75 36-114 28-114 (277) 348 2rjn_A Response regulator rece 24.4 33 0.0014 14.1 6.3 54 60-114 9-62 (154) 349 1ja9_A 4HNR, 1,3,6,8-tetrahydr 24.3 33 0.0014 14.1 6.9 79 35-114 19-110 (274) 350 2hwk_A Helicase NSP2; rossman 24.0 33 0.0014 14.1 2.3 39 227-266 232-270 (320) 351 2g72_A Phenylethanolamine N-me 23.9 34 0.0014 14.1 4.6 29 222-250 188-216 (289) 352 2c29_D Dihydroflavonol 4-reduc 23.3 35 0.0015 14.0 3.5 57 39-95 8-68 (337) 353 3hv2_A Response regulator/HD d 22.8 35 0.0015 13.9 6.9 56 57-113 13-68 (153) 354 2hq1_A Glucose/ribitol dehydro 22.6 36 0.0015 13.9 6.0 73 43-115 10-95 (247) 355 3e18_A Oxidoreductase; dehydro 22.6 36 0.0015 13.9 4.3 78 46-134 12-99 (359) 356 3l6e_A Oxidoreductase, short-c 22.5 36 0.0015 13.9 7.2 61 51-114 20-88 (235) 357 1zej_A HBD-9, 3-hydroxyacyl-CO 22.0 36 0.0015 13.8 2.9 40 49-88 24-65 (293) 358 1bdb_A CIS-biphenyl-2,3-dihydr 21.9 37 0.0015 13.8 6.8 68 44-114 11-90 (277) 359 2vha_A Periplasmic binding tra 21.8 4.4 0.00018 19.8 -2.8 193 56-264 34-249 (287) 360 2a4k_A 3-oxoacyl-[acyl carrier 21.6 37 0.0016 13.8 6.1 68 44-114 12-91 (263) 361 3i1j_A Oxidoreductase, short c 21.4 38 0.0016 13.8 7.8 78 36-114 13-105 (247) 362 3db2_A Putative NADPH-dependen 20.8 39 0.0016 13.7 5.2 81 44-134 10-100 (354) 363 3mwd_B ATP-citrate synthase; A 20.8 5.1 0.00022 19.4 -2.6 125 115-246 185-325 (334) 364 1vjk_A Molybdopterin convertin 20.8 16 0.00066 16.2 -0.2 58 186-250 37-94 (98) 365 2d8n_A Recoverin; structural g 20.6 39 0.0016 13.7 6.3 114 151-267 51-168 (207) 366 3o1n_A 3-dehydroquinate dehydr 20.5 35 0.0015 14.0 1.6 29 64-92 47-76 (276) 367 2cq2_A Hypothetical protein LO 20.2 40 0.0017 13.6 1.9 24 146-169 34-57 (114) 368 1yde_A Retinal dehydrogenase/r 20.2 40 0.0017 13.6 7.1 74 36-114 8-93 (270) No 1 >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 Probab=100.00 E-value=0 Score=784.44 Aligned_cols=278 Identities=45% Similarity=0.706 Sum_probs=264.5 Q ss_pred CCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHH Q ss_conf 78334009868866083888889983768828899999748909998099899999999852148852771132788987 Q gi|255764511|r 18 GDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD 97 (341) Q Consensus 18 ~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~ 97 (341) ..|+|||++||+++|.++++|+|||||||+||||++||+++++|||||+||+|+..|+++ +.+++.+++.+|+++.+ T Consensus 4 ~~H~PVLl~Evl~~L~~~~~g~~iD~T~G~GGHS~~iL~~~~~liaiDrD~~Ai~~a~~~---~~~~~~~~~~~f~~~~~ 80 (285) T 1wg8_A 4 MTHVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL---HLPGLTVVQGNFRHLKR 80 (285) T ss_dssp CCCCCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT---CCTTEEEEESCGGGHHH T ss_pred CCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHC---CCCCCEEEEEEHHHHHH T ss_conf 986762199999727858999999948898299999995799389998988999986640---44431688630012178 Q ss_pred HHHH---CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 6531---2332478622520788876540734456641010435568418999862225789989997446302688999 Q gi|255764511|r 98 YVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAH 174 (341) Q Consensus 98 ~l~~---~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~~a~~IA~ 174 (341) ++.. .+|||||+||||||+|||+++|||||+.|||||||||+++.+|+||||+|++++|++||++||||++|++||+ T Consensus 81 ~l~~~~~~~vdgIL~DLGvSS~QlD~~~RGFSF~~dgpLDMRMd~~~~~A~~iln~~~e~~L~~i~~~yGEe~~a~~IA~ 160 (285) T 1wg8_A 81 HLAALGVERVDGILADLGVSSFHLDDPSRGFSYQKEGPLDMRMGLEGPTAKEVVNRLPLEALARLLRELGEEPQAYRIAR 160 (285) T ss_dssp HHHHTTCSCEEEEEEECSCCHHHHHCGGGCCCSSSCCBSCCCSSSCSCCHHHHHHHSCHHHHHHHHHHHHCCTTHHHHHH T ss_pred HHHHCCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 89864976577899705658275547755761267786776530148779999985408999999999467358899999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCH Q ss_conf 99999752124321379999998876431277125788888876651340578999999885202445338998725502 Q gi|255764511|r 175 AIVKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLE 254 (341) Q Consensus 175 ~Iv~~R~~~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLE 254 (341) +||++|+.++|.||.+|+++|..+++. +.++||||||||||||+||+||++|+.+|.+++++|+|||||||||||||| T Consensus 161 ~Iv~~R~~~~~~tt~~L~~~i~~~~~~--~~~~~patr~FQALRI~VN~EL~~L~~~L~~~~~~L~~gGrl~VISFHSLE 238 (285) T 1wg8_A 161 AIVAAREKAPIETTTQLAEIVRKAVGF--RRAGHPARKTFQALRIYVNDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE 238 (285) T ss_dssp HHHHHHHHSCCCBHHHHHHHHHHHHCC--CSSSCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHH T ss_conf 999987437642048888888887641--357883677888888862761899999999999863679679999717289 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEEEEECC Q ss_conf 3899999986417887776567787777540452486547888999828710012323778717 Q gi|255764511|r 255 DRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTV 318 (341) Q Consensus 255 DRiVK~ff~~~~~~~~~~~~~~~~~~~~~~~~~l~kkpi~PS~~Ei~~NpRSRSAKLRv~~k~~ 318 (341) |||||+||+.++ |++++||||+||++||+.|||||||||||++|++ T Consensus 239 DRiVK~~fk~~~------------------~~~~~kkpi~ps~~Ei~~NpRsRSAkLRv~~k~~ 284 (285) T 1wg8_A 239 DRVVKRFLRESG------------------LKVLTKKPLVPSEKEAAQNPRARSAKLRAAEKEA 284 (285) T ss_dssp HHHHHHHHHHHC------------------SEESCSSCBCCCHHHHHHCGGGGGCEEEEEECCC T ss_pred HHHHHHHHHHCC------------------CCCCCCCCCCCCHHHHHHCCCCHHEEEEEEEEEC T ss_conf 999999997365------------------2002599948899999758962510322899707 No 2 >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* Probab=100.00 E-value=0 Score=774.81 Aligned_cols=288 Identities=39% Similarity=0.654 Sum_probs=268.3 Q ss_pred HCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECC Q ss_conf 011607833400986886608388888998376882889999974--890999809989999999985214885277113 Q gi|255764511|r 13 IHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA 90 (341) Q Consensus 13 ~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~ 90 (341) |.....+|+|||++||+++|.++++|+|||||||+||||.+||++ +++|||||+||+|+..|++++..|++|+.+++. T Consensus 3 ~~~~~~~H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHs~~iL~~~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~ 82 (301) T 1m6y_A 3 MRKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKV 82 (301) T ss_dssp -CCSCSSCCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEEC T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 66456782634199999836838999999918897199999997399984999838889999999876412431000012 Q ss_pred CHHHHHHHHHH---CCCCEEEEECCCHHHHHHHHHHCCCCCCCCCEECCCCCC-CCCHHHHHHHCCHHHHHHHHHHHCCC Q ss_conf 27889876531---233247862252078887654073445664101043556-84189998622257899899974463 Q gi|255764511|r 91 TFSQLQDYVPD---KGVDGVVFDLGVSSMQIDCGDRGFSFQKSGPLDMRMSCS-GISASDVVNQANVKDLTRILGILGEE 166 (341) Q Consensus 91 ~F~~i~~~l~~---~~vdgIl~DLGvSS~Qld~~~RGFSf~~dgpLDMRmd~~-~~tA~eiln~~s~~~L~~i~~~yGee 166 (341) +|++++.++.. .+|||||+||||||+|||+++|||||+.|||||||||++ ++||+||||+||+++|++||++|||| T Consensus 83 ~f~~l~~~~~~~~~~~vdgIL~DLGvSS~Qld~~~RGFSF~~dgpLDMRmd~~~~~tA~diln~~se~eL~~I~~~yG~E 162 (301) T 1m6y_A 83 SYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEE 162 (301) T ss_dssp CGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSCSCSSSSSCCBSCCCSSTTSSCCHHHHHHHSCHHHHHHHHHHTTCC T ss_pred CCCHHHHHHHHCCCCCCCEEEECCCCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCC T ss_conf 32116889987187757779962888978896427884025688844575565655799998618999999999980853 Q ss_pred C-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC Q ss_conf 0-2688999999997521243213799999988764--312771257888888766513405789999998852024453 Q gi|255764511|r 167 K-QASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYF--SKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGG 243 (341) Q Consensus 167 ~-~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~~--~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gG 243 (341) + +|++||++||++| ++.+|.+|+++|..+++. .++.++||||||||||||+||+||++|+.+|.+++++|+||| T Consensus 163 ~r~a~~IA~~Iv~~R---~~~~t~~~~~~i~~~~~~~~~~~~~~hpatr~FQALRI~VN~EL~~L~~~L~~~~~~L~~gG 239 (301) T 1m6y_A 163 KRFARRIARKIVENR---PLNTTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVNRELENLKEFLKKAEDLLNPGG 239 (301) T ss_dssp TTTHHHHHHHHHHTC---SCCBHHHHHHHHHHHSCHHHHHHCSSCTTHHHHHHHHHHHHTHHHHHHHHHHHGGGGEEEEE T ss_pred HHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCC T ss_conf 899999999998623---43530466766655421121002466445799999999973309999999999999827996 Q ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCC Q ss_conf 38998725502389999998641788777656778777754045248654788899982871001232377871785 Q gi|255764511|r 244 LLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDVAFNRRSRSAKLRAGMRTVER 320 (341) Q Consensus 244 rl~VISFHSLEDRiVK~ff~~~~~~~~~~~~~~~~~~~~~~~~~l~kkpi~PS~~Ei~~NpRSRSAKLRv~~k~~~~ 320 (341) ||||||||||||||||+||+.++ .+++++||||+||++||+.|||||||||||++|+.+. T Consensus 240 rl~vISfHSLEDRiVK~~f~~~~-----------------~~~~~~kkpi~ps~~Ei~~NpRsRSAkLRv~~ki~~~ 299 (301) T 1m6y_A 240 RIVVISFHSLEDRIVKETFRNSK-----------------KLRILTEKPVRPSEEEIRENPRARSGRLRAAERIEEG 299 (301) T ss_dssp EEEEEESSHHHHHHHHHHHHHCS-----------------SEEESCSSCBCCCHHHHHHCGGGTTCEEEEEEEC--- T ss_pred EEEEEECCCHHHHHHHHHHHCCC-----------------CCCCCCCCCCCCCHHHHHHCCCHHHHHHHEEEECCCC T ss_conf 89999638489999999986263-----------------1365779894979999975985474122225771578 No 3 >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} Probab=98.65 E-value=1.4e-07 Score=68.14 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=71.6 Q ss_pred HHHHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHH Q ss_conf 09868866083--888889983768828899999748909998099899999999852148-852771132788987653 Q gi|255764511|r 24 LLEKVIALLNP--APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~--~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~ 100 (341) +++..-+++.. .+|.+++|+..|.|+.|..+-+..++|+|+|.+++|++.|+++.+..+ +++.++++++.++..++. T Consensus 8 ~~~~~~~~l~~~l~~~~~VLD~gcG~G~~t~~LA~~~~~V~aiDis~~al~~a~~n~~~~~l~nv~~~~~~~~~l~~~~~ 87 (185) T 3mti_A 8 PIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVR 87 (185) T ss_dssp HHHHHHHHHHTTCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCC T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCC T ss_conf 79999999996589999999996388899999982699899758987888789999998299848999936777555135 Q ss_pred HCCCCEEEEECCC Q ss_conf 1233247862252 Q gi|255764511|r 101 DKGVDGVVFDLGV 113 (341) Q Consensus 101 ~~~vdgIl~DLGv 113 (341) ..++.+++|+.+ T Consensus 88 -~~~~~v~~~~~~ 99 (185) T 3mti_A 88 -EPIRAAIFNLGY 99 (185) T ss_dssp -SCEEEEEEEEC- T ss_pred -CCCCEEEEECCC T ss_conf -666569995265 No 4 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Probab=98.62 E-value=7.4e-07 Score=63.58 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=81.9 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHC Q ss_conf 09868866083888889983768828899999748909998099899999999852148-85277113278898765312 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDK 102 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~ 102 (341) =+..+++.+.++++..++|.=.|.|+.+..+.+.+++|+|+|..+.++..|+++++..+ +++.++.+++.++. +... T Consensus 25 ~~~~l~~~~~l~~~~~VLDiGcG~G~~~~~la~~~~~v~g~D~s~~~~~~a~~~~~~~g~~~i~~~~~d~~~l~--~~~~ 102 (260) T 1vl5_A 25 DLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--FTDE 102 (260) T ss_dssp CHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--SCTT T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHCCCCCCCCCCEEEECCCCCCC--CCCC T ss_conf 99999996089992999995464719999999729969999899999998661222245665247751123578--7778 Q ss_pred CCCEEEEECCCHHHHHHHHHHCC Q ss_conf 33247862252078887654073 Q gi|255764511|r 103 GVDGVVFDLGVSSMQIDCGDRGF 125 (341) Q Consensus 103 ~vdgIl~DLGvSS~Qld~~~RGF 125 (341) .+|.|+.-. +.++++|++..| T Consensus 103 sfD~V~~~~--~l~h~~d~~~~l 123 (260) T 1vl5_A 103 RFHIVTCRI--AAHHFPNPASFV 123 (260) T ss_dssp CEEEEEEES--CGGGCSCHHHHH T ss_pred CEEEEEEEC--CHHHCCCHHHHH T ss_conf 557998702--255268999999 No 5 >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Probab=98.61 E-value=2e-06 Score=60.83 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=70.4 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHH Q ss_conf 9868866083888889983768828899999748909998099899999999852148---8527711327889876531 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPD 101 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~---~r~~~~~~~F~~i~~~l~~ 101 (341) -+=.++.+.+.+++.++|.-.|.|..+.++.+..++++|+|.|++|+..|+++.+..+ .++.++++++-+ .++. T Consensus 41 t~~Ll~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~iDis~~~i~~a~~n~~~~~l~~~~i~~~~~D~~~---~~~~ 117 (194) T 1dus_A 41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKD 117 (194) T ss_dssp HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTT T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCHHH---HCCC T ss_conf 9999982898899949995696429999999738847998263678899999999819998619999873676---3356 Q ss_pred CCCCEEEEECCC Q ss_conf 233247862252 Q gi|255764511|r 102 KGVDGVVFDLGV 113 (341) Q Consensus 102 ~~vdgIl~DLGv 113 (341) ..+|.|+.+..+ T Consensus 118 ~~fD~Ii~~~~~ 129 (194) T 1dus_A 118 RKYNKIITNPPI 129 (194) T ss_dssp SCEEEEEECCCS T ss_pred CCCCEEEECCCH T ss_conf 774399999522 No 6 >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Probab=98.43 E-value=1.2e-06 Score=62.25 Aligned_cols=85 Identities=20% Similarity=0.393 Sum_probs=70.5 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHH Q ss_conf 0986886608388888998376882889999974---890999809989999999985214--88527711327889876 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDY 98 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~ 98 (341) ++.+. ++||.+++|+..|.|+.|..+++. .++|+|+|.++++++.|+++.++. .+++.++++++.++... T Consensus 15 ~l~~~-----ik~G~~VLDlGcG~G~~t~~la~~~~~~~~V~giDis~~~l~~ar~~~~~~g~~~~v~~~~~d~~~~~~~ 89 (197) T 3eey_A 15 YIKMF-----VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY 89 (197) T ss_dssp HHHHH-----CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT T ss_pred HHHHH-----CCCCCEEEEEEEECCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHC T ss_conf 99985-----8999999999204889999999983898199999738899899999999839987789998586760121 Q ss_pred HHHCCCCEEEEECCCH Q ss_conf 5312332478622520 Q gi|255764511|r 99 VPDKGVDGVVFDLGVS 114 (341) Q Consensus 99 l~~~~vdgIl~DLGvS 114 (341) .+ ..++.+.+|+|+. T Consensus 90 ~~-~~~~~~~~~~~~~ 104 (197) T 3eey_A 90 ID-CPVKAVMFNLGYL 104 (197) T ss_dssp CC-SCEEEEEEEESBC T ss_pred CC-CCCCEEEEEEEEC T ss_conf 57-7643046525532 No 7 >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Probab=98.41 E-value=8.4e-07 Score=63.20 Aligned_cols=88 Identities=17% Similarity=0.357 Sum_probs=70.6 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC------------CCCEEEEC Q ss_conf 986886608388888998376882889999974---890999809989999999985214------------88527711 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY------------KEQFSLFQ 89 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~------------~~r~~~~~ 89 (341) ..-++..+++.||..++|+-.|.|.-|.++... .|+|+++|.+++.+..|+++++.+ .+++.+.+ T Consensus 94 ~a~Il~~l~I~PG~rVLE~GtGsG~lt~~LAr~vgp~G~V~~~D~~~~~~~~Ar~n~~~~~~~~~~~~~~~~~~~v~~~~ 173 (336) T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336) T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE T ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 99999985899998899835377799999999628984899843999999999999997432000122113677079997 Q ss_pred CCHHHHHHHHHHCCCCEEEEECC Q ss_conf 32788987653123324786225 Q gi|255764511|r 90 ATFSQLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 90 ~~F~~i~~~l~~~~vdgIl~DLG 112 (341) ..+.+....+....+|.|++|+. T Consensus 174 ~di~~~~~~~~~~~~D~VfLDlp 196 (336) T 2b25_A 174 KDISGATEDIKSLTFDAVALDML 196 (336) T ss_dssp SCTTCCC-------EEEEEECSS T ss_pred CCHHHCCCCCCCCCCCEEECCCC T ss_conf 76665235568875333104676 No 8 >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Probab=98.35 E-value=3.1e-06 Score=59.58 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=67.0 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHCCCCEEEEE Q ss_conf 83888889983768828899999748909998099899999999852148--8527711327889876531233247862 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341) ...++..++|+..|.|+.+.++.+.+.+|+|+|.+++++..|+++.+.++ +++.++++++.++. ....+|.|+.| T Consensus 75 ~~~~~~~vlD~gcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~~~~~i~~~~~D~~~~~---~~~~~D~i~~~ 151 (241) T 3gdh_A 75 QSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---SFLKADVVFLS 151 (241) T ss_dssp HHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---GGCCCSEEEEC T ss_pred HCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHH---HCCCCEEEEEC T ss_conf 028999899937873688999996799899998977888999999998499874399976486641---43784499983 Q ss_pred CCC Q ss_conf 252 Q gi|255764511|r 111 LGV 113 (341) Q Consensus 111 LGv 113 (341) --+ T Consensus 152 pp~ 154 (241) T 3gdh_A 152 PPW 154 (241) T ss_dssp CCC T ss_pred CCC T ss_conf 787 No 9 >2yxd_A Probable cobalt-precorrin-6Y C(15)- methyltransferase [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii DSM2661} Probab=98.29 E-value=1.2e-05 Score=55.68 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=72.0 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCC Q ss_conf 868866083888889983768828899999748909998099899999999852148-8527711327889876531233 Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGV 104 (341) Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~v 104 (341) .-+++.|+++++.+++|.-.|.|.-|..+.+..++|+|+|.+++++..++++.+.++ +++.+++++..+. +....+ T Consensus 25 ~l~l~~L~l~~~~~VlDlg~G~G~~si~la~~~~~V~ave~~~~~i~~a~~n~~~~gv~nv~~i~g~a~~~---l~~~~~ 101 (183) T 2yxd_A 25 AVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDKLEF 101 (183) T ss_dssp HHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGGCCC T ss_pred HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHH---HHCCCC T ss_conf 99999769989499999617476999998873899999979899999999999976899879994645656---406998 Q ss_pred CEEEEECCCHH Q ss_conf 24786225207 Q gi|255764511|r 105 DGVVFDLGVSS 115 (341) Q Consensus 105 dgIl~DLGvSS 115 (341) |.|+.+.+-.. T Consensus 102 D~v~ig~~~~~ 112 (183) T 2yxd_A 102 NKAFIGGTKNI 112 (183) T ss_dssp SEEEECSCSCH T ss_pred CEEEECCCHHH T ss_conf 94998998709 No 10 >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Probab=98.22 E-value=1.9e-05 Score=54.38 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=71.7 Q ss_pred HHHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH Q ss_conf 09868866083-88888998376882889999974--8909998099899999999852148852771132788987653 Q gi|255764511|r 24 LLEKVIALLNP-APGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~-~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~ 100 (341) |...+++.+.. .++..++|-=.|.|..+..+++. +.+++|+|.+++++..|++++.. ..++.++++++.++. + T Consensus 31 ~~~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~A~~~~~~-~~~v~~~~~D~~~~~--~- 106 (234) T 3dtn_A 31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG-NLKVKYIEADYSKYD--F- 106 (234) T ss_dssp HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS-CTTEEEEESCTTTCC--C- T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHC-CCCEEEEEEECCCCC--C- T ss_conf 999999984356999959998176859999999988996899995850457899986302-776247742001345--4- Q ss_pred HCCCCEEEEECCCHHHHHHHHHHC Q ss_conf 123324786225207888765407 Q gi|255764511|r 101 DKGVDGVVFDLGVSSMQIDCGDRG 124 (341) Q Consensus 101 ~~~vdgIl~DLGvSS~Qld~~~RG 124 (341) ...+|.|+.- .+.+.+.++++. T Consensus 107 ~~~fD~I~~~--~~l~~l~~~~~~ 128 (234) T 3dtn_A 107 EEKYDMVVSA--LSIHHLEDEDKK 128 (234) T ss_dssp CSCEEEEEEE--SCGGGSCHHHHH T ss_pred CCCHHHHHHH--HHHHCCCHHHHH T ss_conf 4551345557--778708938899 No 11 >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural genomics, NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus VF5} Probab=98.21 E-value=1.2e-05 Score=55.76 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=76.1 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHH Q ss_conf 34009868866083888889983768828899999748909998099899999999852148--8527711327889876 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDY 98 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~ 98 (341) +|--..-++..+++.||..++|+=.|.|+.|..+.+..++|+++|.+++.++.|+++++.++ +++.+++.++.+. . T Consensus 76 ypkD~~~Ii~~l~i~pG~rVLEiGtGsG~lt~~La~~~g~v~t~e~~e~~~~~A~~n~~~~g~~~nv~~~~~D~~~~--~ 153 (248) T 2yvl_A 76 YPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDA--E 153 (248) T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTS--C T ss_pred CHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHC--C T ss_conf 78999999998289999979973743119999998607879998288999999999899700577059999122214--3 Q ss_pred HHHCCCCEEEEECC Q ss_conf 53123324786225 Q gi|255764511|r 99 VPDKGVDGVVFDLG 112 (341) Q Consensus 99 l~~~~vdgIl~DLG 112 (341) .++..+|.|++|+. T Consensus 154 ~~~~~fD~V~ld~p 167 (248) T 2yvl_A 154 VPEGIFHAAFVDVR 167 (248) T ss_dssp CCTTCBSEEEECSS T ss_pred CCCCCCCEEEEECC T ss_conf 24587899999178 No 12 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Probab=98.19 E-value=9.3e-06 Score=56.45 Aligned_cols=89 Identities=19% Similarity=0.340 Sum_probs=72.2 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC----CCCEEEECCCHH Q ss_conf 3400986886608388888998376882889999974---890999809989999999985214----885277113278 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY----KEQFSLFQATFS 93 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~----~~r~~~~~~~F~ 93 (341) +|--..-++..+++.||..++|+=.|.|.-|.+++.. .|+|+++|.+++.+..|+++++.+ .+++.+.++++. T Consensus 84 ypkD~~~Ii~~ldi~PG~~VLE~GtGsG~lT~~LAr~vgp~G~V~t~D~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~ 163 (280) T 1i9g_A 84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA 163 (280) T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG T ss_pred CHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCC T ss_conf 85899999998499999989992276159999999974998599999589999999998555431578862999955512 Q ss_pred HHHHHHHHCCCCEEEEEC Q ss_conf 898765312332478622 Q gi|255764511|r 94 QLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 94 ~i~~~l~~~~vdgIl~DL 111 (341) +. -+++..+|+|++|+ T Consensus 164 ~~--~~~~~~fD~VflDl 179 (280) T 1i9g_A 164 DS--ELPDGSVDRAVLDM 179 (280) T ss_dssp GC--CCCTTCEEEEEEES T ss_pred CC--CCCCCCCCEEEECC T ss_conf 25--56678878689727 No 13 >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Probab=98.17 E-value=1.1e-05 Score=56.06 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=76.8 Q ss_pred CCCCH------HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH Q ss_conf 33400------98688660838888899837688288999997489-099980998999999998521488527711327 Q gi|255764511|r 20 HVPVL------LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 (341) Q Consensus 20 H~PVl------l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F 92 (341) ..||| +.+.+.-....+|+.++|.=.|.|..+..|++..+ +++|+|.+|.+++.|+++.+..+.++.++.... T Consensus 38 ~~~~m~~w~~~~~~~l~~~~~~~g~rVLeiG~G~G~~a~~la~~~~~~vt~id~s~~~l~~a~~~~~~~~~~~~~~~~~~ 117 (236) T 1zx0_A 38 GKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW 117 (236) T ss_dssp TEEEEEGGGHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECHH T ss_conf 70767876899999999753448984999888850999999972997799980898999999998875588620232008 Q ss_pred HHHHHHHHHCCCCEEEEECC Q ss_conf 88987653123324786225 Q gi|255764511|r 93 SQLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 93 ~~i~~~l~~~~vdgIl~DLG 112 (341) ..+...+....+|.|++|.= T Consensus 118 ~~~~~~~~~~~fD~i~~D~~ 137 (236) T 1zx0_A 118 EDVAPTLPDGHFDGILYDTY 137 (236) T ss_dssp HHHGGGSCTTCEEEEEECCC T ss_pred HHHHCCCCCCCCCCEEECCE T ss_conf 87620122356674452116 No 14 >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Probab=98.17 E-value=1.9e-05 Score=54.47 Aligned_cols=86 Identities=16% Similarity=0.291 Sum_probs=70.8 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHH Q ss_conf 0986886608388888998376882889999974---8909998099899999999852148--8527711327889876 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDY 98 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~ 98 (341) -..-++..+++.||..++|+-.|.|+-|..++.. .++|+++|.+++.+..|+++++.++ +++.+.+..+.+ . T Consensus 100 D~~~Ii~~ldi~pG~~VLDiG~GsG~lt~~lA~~v~~~g~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~~D~~~---~ 176 (277) T 1o54_A 100 DSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE---G 176 (277) T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG---C T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC---C T ss_conf 9999999808999998997688827999999985189809999968899999999989974998767999686224---4 Q ss_pred HHHCCCCEEEEECC Q ss_conf 53123324786225 Q gi|255764511|r 99 VPDKGVDGVVFDLG 112 (341) Q Consensus 99 l~~~~vdgIl~DLG 112 (341) .....+|.|++|++ T Consensus 177 ~~~~~~D~V~ld~p 190 (277) T 1o54_A 177 FDEKDVDALFLDVP 190 (277) T ss_dssp CSCCSEEEEEECCS T ss_pred CCCCCCCEEECCCC T ss_conf 44445410221789 No 15 >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Probab=98.13 E-value=2.7e-05 Score=53.44 Aligned_cols=81 Identities=21% Similarity=0.334 Sum_probs=67.9 Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHHHCCC Q ss_conf 68866083888889983768828899999748909998099899999999852148--8527711327889876531233 Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVPDKGV 104 (341) Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l~~~~v 104 (341) -++..+.+.++..++|.--|.|+.|.+++...++|+|+|.|++++..++++.+.++ +++.+++++..+.. .....+ T Consensus 24 ~il~~l~~~~g~~VLDiGcG~G~~s~~la~~~~~V~avD~~~~~~~~a~~~~~~~gl~~~v~~~~gd~~~~~--~~~~~~ 101 (192) T 1l3i_A 24 LIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL--CKIPDI 101 (192) T ss_dssp HHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH--TTSCCE T ss_pred HHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHCC--CCCCCC T ss_conf 999866999979999983870499999984399999999062889999999998099988899988621053--000886 Q ss_pred CEEEE Q ss_conf 24786 Q gi|255764511|r 105 DGVVF 109 (341) Q Consensus 105 dgIl~ 109 (341) |-|+. T Consensus 102 D~v~~ 106 (192) T 1l3i_A 102 DIAVV 106 (192) T ss_dssp EEEEE T ss_pred CEEEE T ss_conf 88999 No 16 >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Probab=98.13 E-value=1.2e-05 Score=55.73 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=65.9 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC---CCCEEEECCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 88888998376882889999974890999809989999999985214---885277113278898765312332478622 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~---~~r~~~~~~~F~~i~~~l~~~~vdgIl~DL 111 (341) .+|+.++|+|-|-|+.+.++-..+.+|+++|+||.+...|+.+++.+ ..++.++++...+....+....+|.|++|- T Consensus 92 ~~g~~v~Dl~cG~G~da~alA~~~~~V~~vE~d~~~~~~A~~N~~~~~~~~~~v~~~~~D~~~~l~~~~~~~~d~v~~DP 171 (410) T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP 171 (410) T ss_dssp CTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC T ss_pred CCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCEEEECC T ss_conf 79998998788667999999963998999958999999999848987267882699966688887534677788899766 Q ss_pred C Q ss_conf 5 Q gi|255764511|r 112 G 112 (341) Q Consensus 112 G 112 (341) - T Consensus 172 a 172 (410) T 3ll7_A 172 A 172 (410) T ss_dssp E T ss_pred C T ss_conf 2 No 17 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Probab=98.13 E-value=9.7e-06 Score=56.33 Aligned_cols=85 Identities=16% Similarity=0.294 Sum_probs=69.9 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHH Q ss_conf 986886608388888998376882889999974---8909998099899999999852148--85277113278898765 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYV 99 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l 99 (341) ..-++..+.+.||..++|+-.|.|+-|.+++.. .++|+++|.+++.++.|+++++.+. +++.+++.++.+ .+ T Consensus 99 ~~~Ii~~l~i~PG~rVLEiG~GsG~lt~~LA~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nV~~~~~Di~e---~~ 175 (275) T 1yb2_A 99 ASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIAD---FI 175 (275) T ss_dssp -------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTT---CC T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCHHEEHHHHH---CC T ss_conf 999999719999798999577187899999986089958999908899999999867763156752111011221---02 Q ss_pred HHCCCCEEEEECC Q ss_conf 3123324786225 Q gi|255764511|r 100 PDKGVDGVVFDLG 112 (341) Q Consensus 100 ~~~~vdgIl~DLG 112 (341) .+..+|.|++|+. T Consensus 176 ~~~~fD~V~ld~p 188 (275) T 1yb2_A 176 SDQMYDAVIADIP 188 (275) T ss_dssp CSCCEEEEEECCS T ss_pred CCCCCCCEEEECC T ss_conf 4442330587056 No 18 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Probab=98.07 E-value=9.3e-05 Score=50.00 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=29.5 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEE-CCCHHHHHHHHHHH Q ss_conf 057899999988520244533899872-55023899999986 Q gi|255764511|r 224 EIEELAQGLRSAEKALKAGGLLIVVSF-HSLEDRLVKKFFAS 264 (341) Q Consensus 224 El~~L~~~L~~~~~~L~~gGrl~VISF-HSLEDRiVK~ff~~ 264 (341) ..+.++.++..+.++|+|||++.+++= |---..+++..|.. T Consensus 315 ~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~y~~~l~~~f~~ 356 (381) T 3dmg_A 315 ILDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFGA 356 (381) T ss_dssp CCHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHSC T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCC T ss_conf 889999999999987584848999973888818999986085 No 19 >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Probab=98.06 E-value=4.2e-06 Score=58.72 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=82.8 Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCH Q ss_conf 607833400986886608388888998376882889999974-890999809989999999985214--88527711327 Q gi|255764511|r 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATF 92 (341) Q Consensus 16 ~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F 92 (341) .....+|++.+++++.+..+++ .++|-=.|.|..+..+++. +.+++|+|..++++..|++++... .+++.+.++++ T Consensus 24 ~f~~~y~~~~~~i~~~~~~~~~-~VLDiGcG~G~~~~~la~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~i~~~~~d~ 102 (219) T 3dlc_A 24 LFAPIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV 102 (219) T ss_dssp TTTTHHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT T ss_pred HHHCCHHHHHHHHHHHCCCCCC-EEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCC T ss_conf 7211169999999997299999-399962758599999995369989999797899999987444216666400013653 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCC Q ss_conf 889876531233247862252078887654073 Q gi|255764511|r 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 (341) Q Consensus 93 ~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGF 125 (341) .++. ++...+|.|+.-..+ +++.++...| T Consensus 103 ~~~~--~~~~~fD~V~~~~~l--~h~~d~~~~l 131 (219) T 3dlc_A 103 HNIP--IEDNYADLIVSRGSV--FFWEDVATAF 131 (219) T ss_dssp TBCS--SCTTCEEEEEEESCG--GGCSCHHHHH T ss_pred CCCC--CCCCCCCEEEECCHH--HHCCCHHHHH T ss_conf 3567--544555299984416--7458999999 No 20 >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27} Probab=97.98 E-value=5.3e-05 Score=51.58 Aligned_cols=92 Identities=22% Similarity=0.383 Sum_probs=74.4 Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHH Q ss_conf 833400986886608388888998376882889999974---890999809989999999985214--885277113278 Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFS 93 (341) Q Consensus 19 ~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~ 93 (341) --+|-...-++..+++.||..++|+=.|.|+-|..+.+. .++|+++|.++++++.|+++++.+ .+++.+.++++. T Consensus 79 iiyp~d~~~Ii~~l~i~pG~~VLEiG~GsG~lt~~lA~~v~~~g~V~~~d~~~~~~~~A~~n~~~~~~~~~v~~~~~d~~ 158 (258) T 2pwy_A 79 PTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLE 158 (258) T ss_dssp CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGG T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHH T ss_conf 74779999999971989999999877706799999999728873899984899999999999998089985568836578 Q ss_pred HHHHHHHHCCCCEEEEECC Q ss_conf 8987653123324786225 Q gi|255764511|r 94 QLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 94 ~i~~~l~~~~vdgIl~DLG 112 (341) +. ......+|.|++|+. T Consensus 159 ~~--~~~~~~~d~v~ld~p 175 (258) T 2pwy_A 159 EA--ELEEAAYDGVALDLM 175 (258) T ss_dssp GC--CCCTTCEEEEEEESS T ss_pred HC--CCCCCCCCEEEECCC T ss_conf 85--555643238996488 No 21 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Probab=97.98 E-value=4.9e-05 Score=51.79 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=69.3 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCC Q ss_conf 09868866083888889983768828899999748909998099899999999852148852771132788987653123 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~ 103 (341) .+.+.+..+.+.++..++|.=.|.|.++..+.+.+.+++|+|.+++++..|+++..+...+..++++++.++. .+.. T Consensus 29 ~~~~~~~~~~~~~~~~ILDiGcGtG~~~~~l~~~g~~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~d~~~l~---~~~~ 105 (252) T 1wzn_A 29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA---FKNE 105 (252) T ss_dssp HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC---CCSC T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHHHCC---CCCC T ss_conf 9999999735789898999547586999999976998999974688999999977642875236865542056---6777 Q ss_pred CCEEEE Q ss_conf 324786 Q gi|255764511|r 104 VDGVVF 109 (341) Q Consensus 104 vdgIl~ 109 (341) +|.|+. T Consensus 106 fD~V~~ 111 (252) T 1wzn_A 106 FDAVTM 111 (252) T ss_dssp EEEEEE T ss_pred CCEEEE T ss_conf 548999 No 22 >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} Probab=97.96 E-value=6e-05 Score=51.25 Aligned_cols=84 Identities=21% Similarity=0.225 Sum_probs=60.7 Q ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH---------HCCCCEEEECCCHHHHH-HHH Q ss_conf 66083888889983768828899999748909998099899999999852---------14885277113278898-765 Q gi|255764511|r 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR---------DYKEQFSLFQATFSQLQ-DYV 99 (341) Q Consensus 30 ~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~---------~~~~r~~~~~~~F~~i~-~~l 99 (341) ..+...++..++|||.|.|+.|-.+...+.+|+++|++|......++-++ ....|+.+++++..+.- .+. T Consensus 77 kA~g~~~~~~VLD~taGlG~Da~~lA~~G~~V~~vE~sp~~~~Ll~~~l~~a~~~~~~~~~~~ri~~~~gDa~~~l~~l~ 156 (258) T 2r6z_A 77 KAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALV 156 (258) T ss_dssp HHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHH T ss_pred HHHCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 98588789819990787359999999769989999688899999999999999696876788755710075999999999 Q ss_pred H-HCCCCEEEEECCC Q ss_conf 3-1233247862252 Q gi|255764511|r 100 P-DKGVDGVVFDLGV 113 (341) Q Consensus 100 ~-~~~vdgIl~DLGv 113 (341) . ...+|.|++|-=+ T Consensus 157 ~~~~~~DvIylDPMf 171 (258) T 2r6z_A 157 KTQGKPDIVYLDPMY 171 (258) T ss_dssp HHHCCCSEEEECCCC T ss_pred HCCCCCCEEEECCCC T ss_conf 638998889988999 No 23 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Probab=97.96 E-value=1.8e-05 Score=54.54 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=87.5 Q ss_pred CCCCCCHHHHHHH----HHCCC-CCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH Q ss_conf 7833400986886----60838-888899837688288999997489099980998999999998521488527711327 Q gi|255764511|r 18 GDHVPVLLEKVIA----LLNPA-PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 (341) Q Consensus 18 ~~H~PVll~Evl~----~l~~~-~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F 92 (341) -.|.|.-...+.. .+.+. ++..++|.-.|.|+.|..+...+.+|+|+|..+.+++.|++++...+.++.+.+++. T Consensus 16 ~~~~~~~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~t~~la~~~~~V~gvD~S~~~l~~a~~r~~~~~~~v~~~~~da 95 (263) T 2yqz_A 16 RAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA 95 (263) T ss_dssp HCCCHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCHHHHHCC T ss_conf 65678999999999998612358999899951788699999996699899998989999998740210114410222012 Q ss_pred HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC-----CCCCCCEECC Q ss_conf 8898765312332478622520788876540734-----4566410104 Q gi|255764511|r 93 SQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPLDMR 136 (341) Q Consensus 93 ~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgpLDMR 136 (341) .++. +++..+|.|+.-.++ ++++++.+.|. .+.+|.|=.. T Consensus 96 ~~l~--~~~~sfD~V~~~~~l--~~~~d~~~~l~e~~r~LkPGG~l~~~ 140 (263) T 2yqz_A 96 RAIP--LPDESVHGVIVVHLW--HLVPDWPKVLAEAIRVLKPGGALLEG 140 (263) T ss_dssp TSCC--SCTTCEEEEEEESCG--GGCTTHHHHHHHHHHHEEEEEEEEEE T ss_pred CCCC--CCCCCCCEEEECCHH--HHCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 2234--667610478751227--75589999999999985808389999 No 24 >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Probab=97.92 E-value=0.00012 Score=49.33 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=70.0 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHH Q ss_conf 3400986886608388888998376882889999974---890999809989999999985214--88527711327889 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i 95 (341) +|--..-++..+++.||..++|+-.|.|+-|..+... .++|+|+|.+++++..|+++++.. .+++.+.+..... T Consensus 78 yp~d~~~Ii~~l~i~pG~rVLd~G~GsG~lt~~lar~~~~~G~V~~~D~~~~~~~~A~~n~~~~gl~~~v~~~~~D~~~- 156 (255) T 3mb5_A 78 HPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE- 156 (255) T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG- T ss_pred CHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCHHC- T ss_conf 8899999999719898998998886627999999974388977998349999999999999971998149999461103- Q ss_pred HHHHHHCCCCEEEEECC Q ss_conf 87653123324786225 Q gi|255764511|r 96 QDYVPDKGVDGVVFDLG 112 (341) Q Consensus 96 ~~~l~~~~vdgIl~DLG 112 (341) ......+|.|++|+. T Consensus 157 --~~~~~~~D~V~ld~p 171 (255) T 3mb5_A 157 --GIEEENVDHVILDLP 171 (255) T ss_dssp --CCCCCSEEEEEECSS T ss_pred --CCCCCCCCEEEEECC T ss_conf --555565657999668 No 25 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Probab=97.91 E-value=0.00012 Score=49.28 Aligned_cols=94 Identities=12% Similarity=0.112 Sum_probs=73.7 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHH Q ss_conf 33400986886608388888998376882889999974---8909998099899999999852148-8527711327889 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i 95 (341) -.|-|+..+++.|.++++..++|---|.|.-|..+.+. .++|+++|+|++.+..|+++++..+ +++.+++++..+. T Consensus 59 s~P~~~A~ml~~L~l~~g~~VLeIGtGtGy~aa~la~~~~~~~~V~~iE~~~~l~~~A~~~l~~~g~~nv~~~~gD~~~g 138 (317) T 1dl5_A 59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG 138 (317) T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC T ss_pred CHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHC T ss_conf 67999999999718999998999179764768999886188867999957817899999989973578739998955758 Q ss_pred HHHHHHCCCCEEEEECCCHH Q ss_conf 87653123324786225207 Q gi|255764511|r 96 QDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 96 ~~~l~~~~vdgIl~DLGvSS 115 (341) . .....+|.|+.+.++.. T Consensus 139 ~--~~~~~fD~Iiv~~~~~~ 156 (317) T 1dl5_A 139 V--PEFSPYDVIFVTVGVDE 156 (317) T ss_dssp C--GGGCCEEEEEECSBBSC T ss_pred C--CCCCCCCEEEECCCHHH T ss_conf 8--77899419999687688 No 26 >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Probab=97.90 E-value=4.5e-05 Score=52.05 Aligned_cols=86 Identities=24% Similarity=0.332 Sum_probs=71.1 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHH Q ss_conf 0986886608388888998376882889999974---8909998099899999999852148-85277113278898765 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYV 99 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l 99 (341) .-+++++.+.++++..++|.-.|.|..+..+.+. +++|+|+|..+.++..++++.++.+ .++.+++++..++. + T Consensus 25 ~~~~~l~~~~l~~g~~VLDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~lp--~ 102 (219) T 3dh0_A 25 DPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP--L 102 (219) T ss_dssp CHHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS--S T ss_pred CHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHCCEEHHHHHHHHCCC--C T ss_conf 99999986598993999998788887799999750898399998500377889999767640221001000333277--5 Q ss_pred HHCCCCEEEEEC Q ss_conf 312332478622 Q gi|255764511|r 100 PDKGVDGVVFDL 111 (341) Q Consensus 100 ~~~~vdgIl~DL 111 (341) +...+|.|+.-. T Consensus 103 ~~~sfD~V~~~~ 114 (219) T 3dh0_A 103 PDNTVDFIFMAF 114 (219) T ss_dssp CSSCEEEEEEES T ss_pred CCCCEEEHHHCC T ss_conf 555421357314 No 27 >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334} Probab=97.88 E-value=2.1e-05 Score=54.11 Aligned_cols=110 Identities=14% Similarity=0.118 Sum_probs=84.7 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHH------HHHHHHHHHHHC--CCCEEEECCCH Q ss_conf 0986886608388888998376882889999974---890999809989------999999985214--88527711327 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPF------AVSCGQETMRDY--KEQFSLFQATF 92 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~------ai~~a~~~l~~~--~~r~~~~~~~F 92 (341) .-.++++.+.++||..++|.-.|.|+.|..+.+. .++|+|+|.++. ++..|+++.... .+++.|..... T Consensus 31 ~~~~ll~~~~i~pG~rVLDiGCG~G~~t~~la~~~g~~~~V~gvD~s~~~~~~~~~l~~A~~~~~~~~~~~~i~~~~~d~ 110 (275) T 3bkx_A 31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN 110 (275) T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHH T ss_conf 99999986797986989996653885789999983877752347677777666689999999988557777401020015 Q ss_pred HHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHCCCC-----CCCCCEEC Q ss_conf 889876-53123324786225207888765407344-----56641010 Q gi|255764511|r 93 SQLQDY-VPDKGVDGVVFDLGVSSMQIDCGDRGFSF-----QKSGPLDM 135 (341) Q Consensus 93 ~~i~~~-l~~~~vdgIl~DLGvSS~Qld~~~RGFSf-----~~dgpLDM 135 (341) ...... .++..||.|+.-.+ -+++.++...|.- +..|.|-. T Consensus 111 ~~~~~lp~~~~sFD~V~~~~~--l~~~~d~~~~l~~~~rvLkpGG~l~~ 157 (275) T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHS--LWYFASANALALLFKNMAAVCDHVDV 157 (275) T ss_dssp TTTCCGGGTTCCCSEEEEESC--GGGSSCHHHHHHHHHHHTTTCSEEEE T ss_pred HHHCCCCCCCCCCCEEEEEEE--EECCCCHHHHHHHHHHHCCCCCEEEE T ss_conf 440247644576268978016--33289999999999997687878999 No 28 >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structural genomics; HET: SAH; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.66.1.32 Probab=97.87 E-value=9.1e-05 Score=50.07 Aligned_cols=79 Identities=28% Similarity=0.382 Sum_probs=65.3 Q ss_pred HHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEE Q ss_conf 660838888899837688288999997489-0999809989999999985214885277113278898765312332478 Q gi|255764511|r 30 ALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 (341) Q Consensus 30 ~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl 108 (341) ..+...+|..++|.-.|.|+-+.+.+..++ +|+|+|.|+.++..++++++..+.++.++.++..++ ..++|.|+ T Consensus 43 ~~~~dl~g~~vlDlg~G~G~l~i~a~~~g~~~v~~vDid~~~~~~a~~N~~~~~~~~~~~~~d~~~~-----~~~~D~ii 117 (207) T 1wy7_A 43 YSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-----NSRVDIVI 117 (207) T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-----CCCCSEEE T ss_pred HHCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHH-----HCCCCEEE T ss_conf 8649879898999134256999999974998699987989999999999998399827997667886-----14654644 Q ss_pred EECCC Q ss_conf 62252 Q gi|255764511|r 109 FDLGV 113 (341) Q Consensus 109 ~DLGv 113 (341) .|--+ T Consensus 118 ~npP~ 122 (207) T 1wy7_A 118 MNPPF 122 (207) T ss_dssp ECCCC T ss_pred CCCCC T ss_conf 48885 No 29 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=97.86 E-value=2.5e-05 Score=53.65 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=83.3 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHHHCC Q ss_conf 986886608388888998376882889999974890999809989999999985214-8852771132788987653123 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~i~~~l~~~~ 103 (341) +-=.++.++++||..++|.=.|.|.++..+.+.+++|+|+|..+.++..|+++.... -+++.++++++.++. +++.. T Consensus 10 ~~~l~~~~~~~pg~rVLDiGCGtG~~~~~la~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~d~~~l~--~~d~~ 87 (239) T 1xxl_A 10 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP--FPDDS 87 (239) T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC--SCTTC T ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC--CCCCC T ss_conf 9999998589998989995886859999999709979999799999999998654305654000102223568--88873 Q ss_pred CCEEEEECCCHHHHHHHHHHCCC-----CCCCCCEE Q ss_conf 32478622520788876540734-----45664101 Q gi|255764511|r 104 VDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPLD 134 (341) Q Consensus 104 vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgpLD 134 (341) +|.|+.-. +.+++.|++.-|+ .+.+|.+= T Consensus 88 fD~v~~~~--~l~~~~d~~~~l~ei~r~LkpgG~~~ 121 (239) T 1xxl_A 88 FDIITCRY--AAHHFSDVRKAVREVARVLKQDGRFL 121 (239) T ss_dssp EEEEEEES--CGGGCSCHHHHHHHHHHHEEEEEEEE T ss_pred EEEEHHCC--CHHCCCCHHHHHHHHHHHCCCCCEEE T ss_conf 65302045--12224689999999999808382999 No 30 >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, structural genomics; 2.00A {Methanocaldococcus jannaschii DSM2661} Probab=97.84 E-value=0.00011 Score=49.53 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=74.4 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH----CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHH Q ss_conf 3400986886608388888998376882889999974----8909998099899999999852148-8527711327889 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQL 95 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~----~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i 95 (341) .|-|+--+++.|++++|..++|.--|. |+..++|.. .++|+++|+|++.+..|++++...+ +++.+++++... T Consensus 62 ~P~~~a~~l~~l~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~V~~iE~~~~l~~~a~~~l~~~~~~nv~~~~gd~~~- 139 (215) T 2yxe_A 62 AIHMVGMMCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTL- 139 (215) T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGG- T ss_pred CHHHHHHHHHHHCCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCC- T ss_conf 779999999863589998899827884-199999999848887189995288999999999986156644999888655- Q ss_pred HHHHHHCCCCEEEEECCCHH Q ss_conf 87653123324786225207 Q gi|255764511|r 96 QDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 96 ~~~l~~~~vdgIl~DLGvSS 115 (341) .+.....+|.|+...++.+ T Consensus 140 -g~~~~~~fD~I~v~~~~~~ 158 (215) T 2yxe_A 140 -GYEPLAPYDRIYTTAAGPK 158 (215) T ss_dssp -CCGGGCCEEEEEESSBBSS T ss_pred -CCCCCCCCCEEEEECCCHH T ss_conf -7534688648999456101 No 31 >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Probab=97.81 E-value=0.00014 Score=48.83 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=81.0 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974-890999809989999999985214--8852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~ 100 (341) |++++++.+.+++|..++|.-.|.|+.+..+++. +.+|+|+|..+.++..++++.... ..++.+...++.++. .. T Consensus 49 ~~~~l~~~~~l~~g~~VLDiGcG~G~~~~~~~~~~~~~v~gvD~s~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~ 126 (273) T 3bus_A 49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP--FE 126 (273) T ss_dssp HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--SC T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC--CC T ss_conf 9999998669899798999789799889999984598899997848889999999987177732100134434688--77 Q ss_pred HCCCCEEEEECCCHHHHHHHHHHCCC-----CCCCCCE Q ss_conf 12332478622520788876540734-----4566410 Q gi|255764511|r 101 DKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPL 133 (341) Q Consensus 101 ~~~vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgpL 133 (341) ...+|.|+.-.. .+++.++.+-|+ .+.+|.| T Consensus 127 ~~~fD~v~~~~~--l~h~~d~~~~l~~~~r~LkpgG~l 162 (273) T 3bus_A 127 DASFDAVWALES--LHHMPDRGRALREMARVLRPGGTV 162 (273) T ss_dssp TTCEEEEEEESC--TTTSSCHHHHHHHHHTTEEEEEEE T ss_pred CCCCCEEEECCC--EEECCCHHHHHHHHHHHCCCCCEE T ss_conf 776248986462--650664999999999865999689 No 32 >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Probab=97.79 E-value=3.1e-05 Score=53.13 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=59.7 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH Q ss_conf 33400986886608388888998376882889999974-89099980998999999998521488527711327889876 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~ 98 (341) -.|-|.+-+-.......+..++|+=.|.|++|..++.. +.+|+|+|..+.++..|+++.+..+-++.+++++..++. T Consensus 7 ~~~~l~r~l~~~~~~~~~~~VLDiGcG~G~~~~~~~~~~~~~v~gvD~S~~~i~~a~~~~~~~~~~v~~~~~d~~~l~-- 84 (209) T 2p8j_A 7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-- 84 (209) T ss_dssp SCTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-- T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCEEECCC-- T ss_conf 428999999973010698989997278899999999858998999959799999998622035743653002022368-- Q ss_pred HHHCCCCEEE Q ss_conf 5312332478 Q gi|255764511|r 99 VPDKGVDGVV 108 (341) Q Consensus 99 l~~~~vdgIl 108 (341) .++..+|.|+ T Consensus 85 ~~~~sfD~I~ 94 (209) T 2p8j_A 85 FKDESMSFVY 94 (209) T ss_dssp SCTTCEEEEE T ss_pred CCCCCCCHHH T ss_conf 5434233888 No 33 >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Probab=97.78 E-value=0.00015 Score=48.66 Aligned_cols=89 Identities=19% Similarity=0.282 Sum_probs=71.9 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHH-HC Q ss_conf 886608388888998376882889999974---8909998099899999999852148-852771132788987653-12 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP-DK 102 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~-~~ 102 (341) +...|++++|..++|+--|-||-|.+|.+. .+.|+|+|.++.-+...+++++.++ .++.+++.++..+....+ .. T Consensus 94 ~~~~l~~~~g~~VLD~CAapGgKt~~la~l~~~~~~i~a~D~~~~Rl~~l~~~~~r~g~~~v~~~~~d~~~~~~~~~~~~ 173 (309) T 2b9e_A 94 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYH 173 (309) T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGT T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCCCC T ss_conf 99973999999499967896579999998725896699980878889999876775087349997042444443344455 Q ss_pred CCCEEEEECCCHHH Q ss_conf 33247862252078 Q gi|255764511|r 103 GVDGVVFDLGVSSM 116 (341) Q Consensus 103 ~vdgIl~DLGvSS~ 116 (341) ++|.||+|-=.|.. T Consensus 174 ~fd~IlvDaPCSg~ 187 (309) T 2b9e_A 174 EVHYILLDPSCSGS 187 (309) T ss_dssp TEEEEEECCCCCC- T ss_pred CEEEEEECCCCCCC T ss_conf 11399932897888 No 34 >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Probab=97.78 E-value=0.00043 Score=45.72 Aligned_cols=89 Identities=17% Similarity=0.276 Sum_probs=73.9 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHH--H Q ss_conf 886608388888998376882889999974---8909998099899999999852148-852771132788987653--1 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP--D 101 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~--~ 101 (341) +...|.+++|..++|+--|.||.|.+|... .+.++|+|.++.-+...+++++..+ .++.+.+..+..+..... . T Consensus 75 ~~~~l~~~~g~~vLD~CaapGgKt~~i~~~~~~~~~i~a~d~~~~rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~~~~~ 154 (274) T 3ajd_A 75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE 154 (274) T ss_dssp HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTT T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCC T ss_conf 89758999999799907888688999999853868338732778899999887876511441002243767666531454 Q ss_pred CCCCEEEEECCCHHH Q ss_conf 233247862252078 Q gi|255764511|r 102 KGVDGVVFDLGVSSM 116 (341) Q Consensus 102 ~~vdgIl~DLGvSS~ 116 (341) ..+|.||+|--.|.. T Consensus 155 ~~fD~ILlDaPCSg~ 169 (274) T 3ajd_A 155 IFFDKILLDAPCSGN 169 (274) T ss_dssp CCEEEEEEEECCC-- T ss_pred CCCCEEEECCCCCCC T ss_conf 457679963887666 No 35 >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase, structural genomics; 1.90A {Anabaena variabilis atcc 29413} Probab=97.77 E-value=2.5e-05 Score=53.71 Aligned_cols=97 Identities=22% Similarity=0.317 Sum_probs=75.8 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH Q ss_conf 34009868866083888889983768828899999748909998099899999999852148852771132788987653 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~ 100 (341) .+-+-+++++.|.++||..++|-=.|.|..+..+.+.+++|+|+|.++.++..|++++. ++.+..+++.++. . T Consensus 42 ~~~~~~~ll~~l~~~~g~~VLDiGcG~G~~~~~la~~~~~v~giD~s~~ml~~a~~~~~----~~~~~~~~~~~~~---~ 114 (279) T 3ccf_A 42 VWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYP----HLHFDVADARNFR---V 114 (279) T ss_dssp CSSSCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT----TSCEEECCTTTCC---C T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHCC----CCCEEEHHHCCCC---C T ss_conf 79999999970699996999993585859999999649989999163889999986165----4311100000135---6 Q ss_pred HCCCCEEEEECCCHHHHHHHHHHCCC Q ss_conf 12332478622520788876540734 Q gi|255764511|r 101 DKGVDGVVFDLGVSSMQIDCGDRGFS 126 (341) Q Consensus 101 ~~~vdgIl~DLGvSS~Qld~~~RGFS 126 (341) +..+|.|+.-.. .+++.++.+.+. T Consensus 115 ~~~fD~v~~~~~--l~~~~d~~~~l~ 138 (279) T 3ccf_A 115 DKPLDAVFSNAM--LHWVKEPEAAIA 138 (279) T ss_dssp SSCEEEEEEESC--GGGCSCHHHHHH T ss_pred CCCCCEEEEEEC--CCCCCCHHHHHH T ss_conf 765538977520--145678899999 No 36 >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxylating); porphyrin metabolism, S-adenosyl-methionine, structural genomics; 1.80A {Geobacter metallireducens gs-15} Probab=97.73 E-value=0.00022 Score=47.55 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=53.5 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHH Q ss_conf 8866083888889983768828899999748--909998099899999999852148-85277113278 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFS 93 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~ 93 (341) +++.|.+.||..++|.=.|.|..|.++.... ++|+|+|+|++++..++++++.++ .++.++++... T Consensus 32 ~l~~L~l~pg~~VLDiG~GsG~la~~~a~~~~~~~V~aiD~~~~~~~~a~~n~~~~g~~~~~~~~g~~~ 100 (204) T 3e05_A 32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAP 100 (204) T ss_dssp HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTT T ss_pred HHHHCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 998609999399999831078999999997899679999499999999999999819985899734532 No 37 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Probab=97.72 E-value=0.00017 Score=48.33 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=70.9 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHH Q ss_conf 33400986886608388888998376882889999974-890999809989999999985214--885277113278898 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ 96 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~ 96 (341) -.|-.+..+.+.+.++||..++|.=.|.|+.+..+.+. +.+++|+|.++.++..++++.+.. .+++.+.++.+.++ T Consensus 20 ~~~~~~~~l~~~l~l~pg~rVLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~gl~~~v~~~~~d~~~~- 98 (256) T 1nkv_A 20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY- 98 (256) T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC- T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHC- T ss_conf 8899999999970899999999985888889999998649989999898367789988677606554444113636450- Q ss_pred HHHHHCCCCEEEE Q ss_conf 7653123324786 Q gi|255764511|r 97 DYVPDKGVDGVVF 109 (341) Q Consensus 97 ~~l~~~~vdgIl~ 109 (341) .....+|.|+. T Consensus 99 --~~~~~fD~v~~ 109 (256) T 1nkv_A 99 --VANEKCDVAAC 109 (256) T ss_dssp --CCSSCEEEEEE T ss_pred --CCCCCEEEEEE T ss_conf --56784469999 No 38 >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransferase posttranslational modification; 1.59A {Thermus thermophilus HB8} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Probab=97.71 E-value=0.00037 Score=46.14 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=68.2 Q ss_pred HHHCCCCCCCC--CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE Q ss_conf 11011607833--4009868866083888889983768828899999748909998099899999999852148852771 Q gi|255764511|r 11 SAIHHTIGDHV--PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF 88 (341) Q Consensus 11 ~~~~~~~~~H~--PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~ 88 (341) ..|+--++.|- --||+.+.+. ..++..++|.=.|.|-.+.+..+.+.+|+|+|.||.|+..|+++.+..+-+..++ T Consensus 95 pg~aFGTG~H~TT~l~l~~l~~~--~~~g~~VLDvGcGsGiLsi~aak~G~~V~aiDid~~av~~a~~N~~~N~v~~~~~ 172 (254) T 2nxc_A 95 PGMAFGTGHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFL 172 (254) T ss_dssp CC-----CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEE T ss_pred CCCCCCCCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEE T ss_conf 88767799988999999999841--7997989997177788899998459989999887278899999899709944999 Q ss_pred CCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 13278898765312332478622 Q gi|255764511|r 89 QATFSQLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 89 ~~~F~~i~~~l~~~~vdgIl~DL 111 (341) +++..+ ......+|.|++++ T Consensus 173 ~~~~~~---~~~~~~fDlIvaNi 192 (254) T 2nxc_A 173 EGSLEA---ALPFGPFDLLVANL 192 (254) T ss_dssp ESCHHH---HGGGCCEEEEEEEC T ss_pred ECCHHH---CCCCCCCCEEEEEE T ss_conf 874345---16457866899981 No 39 >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: c.66.1.46 Probab=97.70 E-value=0.00048 Score=45.37 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=67.6 Q ss_pred CCCCHHHHHH-HHH--CCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH Q ss_conf 3340098688-660--8388888998376882889999974890999809989999999985214885277113278898 Q gi|255764511|r 20 HVPVLLEKVI-ALL--NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341) Q Consensus 20 H~PVll~Evl-~~l--~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341) -.|-++.|.+ +.| ...+++.++|+--|.|..+.+.+..+.+++++|.|++|+..+++.++..+-.-.+......... T Consensus 22 pt~~~vre~~f~~l~~~~~~~~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~ai~~~~~N~~~~g~~~~v~~~~~d~~~ 101 (171) T 1ws6_A 22 PSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFL 101 (171) T ss_dssp CCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHH T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHCCCCCEEEEEEHHHHH T ss_conf 67489999999997364579798999620678999999980895300606878999999878860665559997789875 Q ss_pred HH--HHHCCCCEEEEECC Q ss_conf 76--53123324786225 Q gi|255764511|r 97 DY--VPDKGVDGVVFDLG 112 (341) Q Consensus 97 ~~--l~~~~vdgIl~DLG 112 (341) .. .....+|-|++|-= T Consensus 102 ~~~~~~~~~fDlI~~DPP 119 (171) T 1ws6_A 102 PEAKAQGERFTVAFMAPP 119 (171) T ss_dssp HHHHHTTCCEEEEEECCC T ss_pred HHHHHCCCCEEEEEECCC T ss_conf 555533885579998799 No 40 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Probab=97.69 E-value=0.00014 Score=48.93 Aligned_cols=88 Identities=16% Similarity=0.128 Sum_probs=65.6 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898765 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) |..-...+++..+...+++.++|.-.|.|.++..+.+.+.+|+|+|.++.++..++++....+.++.+...+..... T Consensus 104 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~g~~v~gvD~s~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--- 180 (286) T 3m70_A 104 NTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN--- 180 (286) T ss_dssp CCCCCCHHHHHHHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC--- T ss_pred CCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECHHHHHC--- T ss_conf 66314899998588899697999837798999999858997999989889999999865422662024440022110--- Q ss_pred HHCCCCEEEEE Q ss_conf 31233247862 Q gi|255764511|r 100 PDKGVDGVVFD 110 (341) Q Consensus 100 ~~~~vdgIl~D 110 (341) ....+|.|+.. T Consensus 181 ~~~~fD~I~~~ 191 (286) T 3m70_A 181 IQENYDFIVST 191 (286) T ss_dssp CCSCEEEEEEC T ss_pred CCCCCCEEEEE T ss_conf 13567578786 No 41 >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Probab=97.67 E-value=0.00038 Score=46.08 Aligned_cols=92 Identities=17% Similarity=0.319 Sum_probs=74.8 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH-H-CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH Q ss_conf 340098688660838888899837688288999997-4-8909998099899999999852148-852771132788987 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-M-GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD 97 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~-~-~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~ 97 (341) .|=|+-.+++.|++++|..++|-=-|.|.-| ++|. . +++|+++|+|++.+..|+++++.++ .++.+.+++..+. T Consensus 76 ~P~~~A~ml~~L~l~~g~~VLeIGsGtGy~t-a~la~l~g~~V~~IE~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g-- 152 (235) T 1jg1_A 76 APHMVAIMLEIANLKPGMNILEVGTGSGWNA-ALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG-- 152 (235) T ss_dssp CHHHHHHHHHHHTCCTTCCEEEECCTTSHHH-HHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC-- T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEEECCCCCC-- T ss_conf 6899999999704899987999478876789-9999864973999962889999999999980997169998870016-- Q ss_pred HHHHCCCCEEEEECCCHH Q ss_conf 653123324786225207 Q gi|255764511|r 98 YVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 98 ~l~~~~vdgIl~DLGvSS 115 (341) ......+|.|+...++.. T Consensus 153 ~~~~~~fD~I~v~~a~~~ 170 (235) T 1jg1_A 153 FPPKAPYDVIIVTAGAPK 170 (235) T ss_dssp CGGGCCEEEEEECSBBSS T ss_pred CCCCCCCCEEEEECCHHH T ss_conf 665576343676146554 No 42 >3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413} Probab=97.64 E-value=3.2e-05 Score=52.99 Aligned_cols=118 Identities=25% Similarity=0.331 Sum_probs=87.1 Q ss_pred CHHHCCCCCC---CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEE Q ss_conf 0110116078---3340098688660838888899837688288999997489099980998999999998521488527 Q gi|255764511|r 10 SSAIHHTIGD---HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFS 86 (341) Q Consensus 10 ~~~~~~~~~~---H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~ 86 (341) =..+...... ..|-...++++.|.+.++..++|.-.|.|..+..+.+.+.+|+|+|..+.+++.++. ..++. T Consensus 5 y~~~a~~Y~~~r~~~~~~~~~~~~~l~l~~~~~vLDvGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-----~~~~~ 79 (261) T 3ege_A 5 YNSIGKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVV-----HPQVE 79 (261) T ss_dssp --------CCSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCC-----CTTEE T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCC-----CCCHH T ss_conf 8899989877277888999999996599996999996488889999999769989999744531210001-----22101 Q ss_pred EECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC-----CCCCCCEECC Q ss_conf 7113278898765312332478622520788876540734-----4566410104 Q gi|255764511|r 87 LFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPLDMR 136 (341) Q Consensus 87 ~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgpLDMR 136 (341) ++.+.+.++. ++...+|.|+.-. +.+++++++..+. .+.+|.|=+- T Consensus 80 ~~~~d~~~l~--~~~~~fD~v~~~~--~l~~~~d~~~~l~e~~r~LkpgG~l~~~ 130 (261) T 3ege_A 80 WFTGYAENLA--LPDKSVDGVISIL--AIHHFSHLEKSFQEMQRIIRDGTIVLLT 130 (261) T ss_dssp EECCCTTSCC--SCTTCBSEEEEES--CGGGCSSHHHHHHHHHHHBCSSCEEEEE T ss_pred HHHHHHHHCC--CCCCCCCEEEECC--HHHHCCCHHHHHHHHHHHCCCCCEEEEE T ss_conf 3334454302--5676013775401--2774689999999999982818589999 No 43 >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly, inter-subunit disulfide bridge; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Probab=97.63 E-value=0.00056 Score=44.94 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=70.8 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH-HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH Q ss_conf 3340098688660838888899837688288999997-489099980998999999998521488527711327889876 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~-~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~ 98 (341) -.|-|.-.+++.|++++|..++|---|.|..| ++|. ..++|+++|.|++.+..|++++..+ .++.+.+++-.. .+ T Consensus 54 s~p~~~a~~l~~L~l~~g~~VLeIG~GsGy~t-a~La~l~~~V~~vE~~~~~~~~A~~~~~~~-~nv~~~~gDg~~--g~ 129 (231) T 1vbf_A 54 TALNLGIFMLDELDLHKGQKVLEIGTGIGYYT-ALIAEIVDKVVSVEINEKMYNYASKLLSYY-NNIKLILGDGTL--GY 129 (231) T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHH-HHHHHHSSEEEEEESCHHHHHHHHHHHTTC-SSEEEEESCGGG--CC T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHHHCCEEEEECCCHHHHHHHHHHHCCC-CEEEEEECCHHC--CC T ss_conf 14899999999718999798999779877889-999985678767628999999999874068-626898663202--87 Q ss_pred HHHCCCCEEEEECCCHH Q ss_conf 53123324786225207 Q gi|255764511|r 99 VPDKGVDGVVFDLGVSS 115 (341) Q Consensus 99 l~~~~vdgIl~DLGvSS 115 (341) .....+|.|+..-++.. T Consensus 130 ~~~~pfD~Iiv~~~~~~ 146 (231) T 1vbf_A 130 EEEKPYDRVVVWATAPT 146 (231) T ss_dssp GGGCCEEEEEESSBBSS T ss_pred CCCCCEEEEEECCCHHH T ss_conf 34698579998575788 No 44 >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Probab=97.63 E-value=0.00032 Score=46.55 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=65.6 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHCCCCEEEEE Q ss_conf 3888889983768828899999748-90999809989999999985214--88527711327889876531233247862 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341) +.+++.++|.-.|.|.=+.++.+.. ++|+|+|.|+++++.|+++++.. .+++.+++++..++.+.++...+|-|+.| T Consensus 47 ~~~~~~vLDlG~G~G~~~l~la~~~~~~v~~vDi~~~~~~~A~~N~~~n~l~~~v~~~~~D~~~~~~~~~~~~fD~Iv~N 126 (259) T 3lpm_A 47 PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCN 126 (259) T ss_dssp CSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEEC T ss_pred CCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHCCCCCCCCEEEEC T ss_conf 66799799972585899999986789889999998999999999998607330112330011100010355425478857 Q ss_pred CCC Q ss_conf 252 Q gi|255764511|r 111 LGV 113 (341) Q Consensus 111 LGv 113 (341) .-| T Consensus 127 PPy 129 (259) T 3lpm_A 127 PPY 129 (259) T ss_dssp CCC T ss_pred CCC T ss_conf 885 No 45 >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Probab=97.63 E-value=0.00013 Score=49.02 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=77.1 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974-890999809989999999985214--8852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~ 100 (341) |+..+.....+.++..++|.=.|.|+.+..+.+. +.+|+|+|.++.++..|+++.... .+++.+..+++.++. .+ T Consensus 70 ~~~~l~~~~~l~~~~~VLDiGCG~G~~~~~la~~~g~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~--~~ 147 (297) T 2o57_A 70 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--CE 147 (297) T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--SC T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC--CC T ss_conf 9999998469899998999889999899999996398599996742778888764432056766227861222567--66 Q ss_pred HCCCCEEEEECCCHHHHHHHHHHCCC Q ss_conf 12332478622520788876540734 Q gi|255764511|r 101 DKGVDGVVFDLGVSSMQIDCGDRGFS 126 (341) Q Consensus 101 ~~~vdgIl~DLGvSS~Qld~~~RGFS 126 (341) ...+|.|+.-- +.+++.|+.+-|. T Consensus 148 ~~~fD~V~~~~--~l~h~~d~~~~l~ 171 (297) T 2o57_A 148 DNSYDFIWSQD--AFLHSPDKLKVFQ 171 (297) T ss_dssp TTCEEEEEEES--CGGGCSCHHHHHH T ss_pred CCCEEEEEECC--CHHHCCCHHHHHH T ss_conf 65110999857--2442379999999 No 46 >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Probab=97.60 E-value=0.00048 Score=45.42 Aligned_cols=93 Identities=17% Similarity=0.332 Sum_probs=70.4 Q ss_pred CCCCCHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH Q ss_conf 833400986886608-3888889983768828899999748-90999809989999999985214--8852771132788 Q gi|255764511|r 19 DHVPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ 94 (341) Q Consensus 19 ~H~PVll~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~ 94 (341) +..|-+..|-..... ..+|..++|+--|.|+-|..+++.+ .+|+|+|.+|.|+..++++.+.. .+++.+++++..+ T Consensus 107 ~f~~~~~~er~rl~~~~~~g~~VlDl~aG~G~~~l~~a~~~~~~V~avD~n~~a~~~~~~N~~~n~~~~~v~~~~~D~~~ 186 (278) T 2frn_A 107 MFSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRD 186 (278) T ss_dssp CCCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTT T ss_pred EECCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH T ss_conf 24587367999999653699889991770519999999974986999979999999999999980999848999681999 Q ss_pred HHHHHHHCCCCEEEEECCCH Q ss_conf 98765312332478622520 Q gi|255764511|r 95 LQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 95 i~~~l~~~~vdgIl~DLGvS 114 (341) + .....+|.|++++-.+ T Consensus 187 ~---~~~~~~D~Vim~~p~~ 203 (278) T 2frn_A 187 F---PGENIADRILMGYVVR 203 (278) T ss_dssp C---CCCSCEEEEEECCCSS T ss_pred H---CCCCCCCEEEECCCCC T ss_conf 4---4666886999899852 No 47 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Probab=97.59 E-value=0.00016 Score=48.40 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=73.0 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC Q ss_conf 98688660838888899837688288999997489099980998999999998521488527711327889876531233 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~v 104 (341) .+++|+.+.+.+++.++|.=.|.|..+..+++.+.+++|+|..+.+++.|++++. +.+.++++.+.++. + ...+ T Consensus 34 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~S~~mi~~a~~k~~---~~~~~~~~d~~~~~--~-~~~f 107 (220) T 3hnr_A 34 YEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP---KEFSITEGDFLSFE--V-PTSI 107 (220) T ss_dssp HHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC---TTCCEESCCSSSCC--C-CSCC T ss_pred HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC---CCCHHHHHHHHHHC--C-CCCC T ss_conf 9999998426697939997287859999999779989999583577899874256---54103344454440--1-7764 Q ss_pred CEEEEECCCHHHHHHHHHH Q ss_conf 2478622520788876540 Q gi|255764511|r 105 DGVVFDLGVSSMQIDCGDR 123 (341) Q Consensus 105 dgIl~DLGvSS~Qld~~~R 123 (341) |.|+.-.. -+++.++++ T Consensus 108 D~I~~~~~--l~h~~~~~~ 124 (220) T 3hnr_A 108 DTIVSTYA--FHHLTDDEK 124 (220) T ss_dssp SEEEEESC--GGGSCHHHH T ss_pred CEEEEHHH--HHHCCCHHH T ss_conf 88976344--885993789 No 48 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Probab=97.58 E-value=0.00031 Score=46.62 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=70.7 Q ss_pred HHHHHHCC-CCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHC Q ss_conf 68866083-88888998376882889999974-890999809989999999985214--885277113278898765312 Q gi|255764511|r 27 KVIALLNP-APGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK 102 (341) Q Consensus 27 Evl~~l~~-~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~~ 102 (341) .+++.+.. .++..++|-=.|.|+.|..+.+. +++|+|+|.++.++..|+++..+. .+++.++++++.++. .+.. T Consensus 36 ~~l~~l~~l~~~~~VLDIGCG~G~~~~~lA~~~~~~V~giD~s~~~l~~a~~~~~~~~l~~~v~~~~~d~~~l~--~~~~ 113 (267) T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--FRNE 113 (267) T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--CCTT T ss_pred HHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCCCCC--CCCC T ss_conf 99981727999998999627897999999974799899997973165898873232344433100100123567--7888 Q ss_pred CCCEEEEECCCHHHHHHHHHHCC Q ss_conf 33247862252078887654073 Q gi|255764511|r 103 GVDGVVFDLGVSSMQIDCGDRGF 125 (341) Q Consensus 103 ~vdgIl~DLGvSS~Qld~~~RGF 125 (341) .+|.|+.-..+ +.+ +.++.| T Consensus 114 ~FD~I~s~~~l--~~~-~~~~~l 133 (267) T 3kkz_A 114 ELDLIWSEGAI--YNI-GFERGL 133 (267) T ss_dssp CEEEEEESSCG--GGT-CHHHHH T ss_pred CEEEEEECHHH--HHC-CHHHHH T ss_conf 46689740437--838-989999 No 49 >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Probab=97.53 E-value=0.00035 Score=46.25 Aligned_cols=89 Identities=18% Similarity=0.243 Sum_probs=67.0 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCC-EEEECCCHHHHHHHHHHCCC Q ss_conf 886608388888998376882889999974--890999809989999999985214885-27711327889876531233 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQ-FSLFQATFSQLQDYVPDKGV 104 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r-~~~~~~~F~~i~~~l~~~~v 104 (341) +...+.|.++..++|+.-|.||.|..+... .+.++|.|.++.-+...++++...+-. ......... .........+ T Consensus 238 ~~~~l~~~~~~~VLD~CAaPGgKt~~la~~~~~~~i~a~d~~~~r~~~l~~~~~r~g~~~~~~~~~~~~-~~~~~~~~~f 316 (429) T 1sqg_A 238 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY-PSQWCGEQQF 316 (429) T ss_dssp HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC-THHHHTTCCE T ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCC-CHHHCCCCCC T ss_conf 776218421441456068804899999986222465622342677888877786416431110234433-1010354566 Q ss_pred CEEEEECCCHHHH Q ss_conf 2478622520788 Q gi|255764511|r 105 DGVVFDLGVSSMQ 117 (341) Q Consensus 105 dgIl~DLGvSS~Q 117 (341) |.||.|-=.|..= T Consensus 317 D~VLlDaPCSg~G 329 (429) T 1sqg_A 317 DRILLDAPCSATG 329 (429) T ss_dssp EEEEEECCCCCGG T ss_pred CEEEEECCCCCCC T ss_conf 4599707604684 No 50 >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii OT3} Probab=97.53 E-value=0.00033 Score=46.46 Aligned_cols=88 Identities=16% Similarity=0.321 Sum_probs=70.7 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCC Q ss_conf 886608388888998376882889999974---8909998099899999999852148-852771132788987653123 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~ 103 (341) +...|.+.+|..++|+--|-||.|..+.+. .+.++|.|.++.-+....+++...+ .++...........+...... T Consensus 251 ~~~~L~~~~g~~VLD~CAaPGGKT~~la~~~~~~~~i~a~d~~~~rl~~l~~~l~r~g~~~v~~~~~d~~~~~~~~~~~~ 330 (450) T 2yxl_A 251 ASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450) T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCC T ss_conf 89873457898587506886579999999865138503112548778778999997087631676133010643235565 Q ss_pred CCEEEEECCCHH Q ss_conf 324786225207 Q gi|255764511|r 104 VDGVVFDLGVSS 115 (341) Q Consensus 104 vdgIl~DLGvSS 115 (341) +|.||.|-=.|+ T Consensus 331 fD~ILvDaPCSg 342 (450) T 2yxl_A 331 ADKVLLDAPCTS 342 (450) T ss_dssp EEEEEEECCCCC T ss_pred CCEEEECCCCCC T ss_conf 766985188889 No 51 >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Probab=97.51 E-value=0.00045 Score=45.58 Aligned_cols=82 Identities=22% Similarity=0.313 Sum_probs=64.4 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC Q ss_conf 98688660838888899837688288999997489099980998999999998521488527711327889876531233 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~v 104 (341) ++++++-. ..+++.++|-=.|.|.+|..+.+.+.+|+|+|..++++..|+++....+..+.+++++..++. ++...+ T Consensus 28 l~~~~~~~-~~~~~rVLDiGCG~G~~~~~la~~~~~v~g~D~s~~~l~~ak~~~~~~~~~~~~~~~d~~~l~--~~~~sf 104 (227) T 1ve3_A 28 LEPLLMKY-MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS--FEDKTF 104 (227) T ss_dssp HHHHHHHS-CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--SCTTCE T ss_pred HHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCEE T ss_conf 99999984-799897999868888999999965998999967504689999988752765333346533488--767705 Q ss_pred CEEEE Q ss_conf 24786 Q gi|255764511|r 105 DGVVF 109 (341) Q Consensus 105 dgIl~ 109 (341) |.|+. T Consensus 105 D~V~~ 109 (227) T 1ve3_A 105 DYVIF 109 (227) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 89986 No 52 >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Probab=97.49 E-value=0.0016 Score=41.95 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=70.0 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCC Q ss_conf 886608388888998376882889999974---8909998099899999999852148-852771132788987653123 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~ 103 (341) +...|.+++|..++|+--|-||-|..|.+. .+.|+|.|.++.-+....++++.++ .++.+.+.....+..... .. T Consensus 97 ~~~~L~~~pg~~VLDlCAAPGgKt~~la~~l~~~g~l~a~d~~~~R~~~l~~nl~r~g~~n~~v~~~d~~~~~~~~~-~~ 175 (456) T 3m4x_A 97 VGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFS-GF 175 (456) T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHT-TC T ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CC T ss_conf 99970999999898816786479999999700897588630646777899876875278748999325443552124-65 Q ss_pred CCEEEEECCCHH Q ss_conf 324786225207 Q gi|255764511|r 104 VDGVVFDLGVSS 115 (341) Q Consensus 104 vdgIl~DLGvSS 115 (341) +|.||.|-=.|. T Consensus 176 fD~VLvDaPCSG 187 (456) T 3m4x_A 176 FDRIVVDAPCSG 187 (456) T ss_dssp EEEEEEECCCCC T ss_pred CCEEEECCCCCC T ss_conf 557997487677 No 53 >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Probab=97.49 E-value=0.00049 Score=45.34 Aligned_cols=90 Identities=18% Similarity=0.357 Sum_probs=70.4 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHH-HH Q ss_conf 3400986886608388888998376882889999974890999809989999999985214-885277113278898-76 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQ-DY 98 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~i~-~~ 98 (341) ...|++.+++++.+.++..++|.=-|.|..|..+.+...+|+|+|.+++|+..|++..+.. -+++.|++++..... .. T Consensus 271 ~~~l~~~v~~~l~~~~~~~vlDLYcG~G~fsl~La~~~~~V~gvE~~~~Av~~A~~na~~n~~~n~~f~~~~~~~~~~~~ 350 (433) T 1uwv_A 271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ 350 (433) T ss_dssp HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH T ss_conf 99999999998445688779995688517778766505624566354999999999999849975699914756664430 Q ss_pred -HHHCCCCEEEEE Q ss_conf -531233247862 Q gi|255764511|r 99 -VPDKGVDGVVFD 110 (341) Q Consensus 99 -l~~~~vdgIl~D 110 (341) ....++|.|++| T Consensus 351 ~~~~~~~d~vilD 363 (433) T 1uwv_A 351 PWAKNGFDKVLLD 363 (433) T ss_dssp GGGTTCCSEEEEC T ss_pred HHHCCCCCEEEEC T ss_conf 6652799989989 No 54 >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Probab=97.44 E-value=0.00069 Score=44.36 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=65.6 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH-HCC Q ss_conf 886608388888998376882889999974---8909998099899999999852148852771132788987653-123 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP-DKG 103 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~-~~~ 103 (341) -++.+.++||..++|.-.|.|..+..+.+. +++|||+|.+|.++..++++..+. .++.++.........+.. ... T Consensus 69 ~l~~l~lkpG~~VLDlG~G~G~~~~~la~~vg~~G~V~aVD~s~~~l~~a~~~a~~~-~ni~~i~~d~~~~~~~~~~~~~ 147 (233) T 2ipx_A 69 GVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-TNIIPVIEDARHPHKYRMLIAM 147 (233) T ss_dssp TCSCCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-TTEEEECSCTTCGGGGGGGCCC T ss_pred CHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC-CCCCEEEEECCCCHHCCCCCCE T ss_conf 555259999999999657689899999998599967999979999999999975514-6664289753670111566526 Q ss_pred CCEEEEECC Q ss_conf 324786225 Q gi|255764511|r 104 VDGVVFDLG 112 (341) Q Consensus 104 vdgIl~DLG 112 (341) ||.|+.|+. T Consensus 148 vd~i~~~~~ 156 (233) T 2ipx_A 148 VDVIFADVA 156 (233) T ss_dssp EEEEEECCC T ss_pred EEEEECCCC T ss_conf 888531422 No 55 >2esr_A Methyltransferase; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes MGAS10394} SCOP: c.66.1.46 Probab=97.43 E-value=0.0028 Score=40.41 Aligned_cols=89 Identities=18% Similarity=0.264 Sum_probs=68.9 Q ss_pred HHHHH-HHHHCC-CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHH Q ss_conf 09868-866083-8888899837688288999997489-0999809989999999985214--88527711327889876 Q gi|255764511|r 24 LLEKV-IALLNP-APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDY 98 (341) Q Consensus 24 ll~Ev-l~~l~~-~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~ 98 (341) .++|. .+.|.. ..|..++|.--|.|.-+...+..+. +|+++|.|++|+..+++.++.. .+++.+++++..+..+. T Consensus 17 ~vre~lfn~L~~~~~g~~vLDl~~GsG~~~iea~~r~a~~v~~ve~~~~a~~~~~~n~~~~~~~~~v~ii~~D~~~~l~~ 96 (177) T 2esr_A 17 KVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC 96 (177) T ss_dssp -CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHC T ss_conf 99999999877556989799995037999999997386201678342889998887576513555102453115555431 Q ss_pred HHHCCCCEEEEECCC Q ss_conf 531233247862252 Q gi|255764511|r 99 VPDKGVDGVVFDLGV 113 (341) Q Consensus 99 l~~~~vdgIl~DLGv 113 (341) +. ..+|-|++|.=+ T Consensus 97 ~~-~~fDiI~~DPPy 110 (177) T 2esr_A 97 LT-GRFDLVFLDPPY 110 (177) T ss_dssp BC-SCEEEEEECCSS T ss_pred CC-CCCCEEEECCCC T ss_conf 34-678868879974 No 56 >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Probab=97.39 E-value=0.0016 Score=42.08 Aligned_cols=86 Identities=16% Similarity=0.306 Sum_probs=68.1 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCC Q ss_conf 886608388888998376882889999974---8909998099899999999852148-852771132788987653123 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~ 103 (341) +...|.|++|..++|+.-|.||.|..+.+. .+.++|.|.++.-+.....+++..+ .++...+..+..+.. .... T Consensus 110 ~~~~L~~~~g~~vLD~CAaPGgKt~~l~~~~~~~g~i~a~d~~~~R~~~l~~~l~r~g~~~i~~~~~d~~~~~~--~~~~ 187 (315) T 1ixk_A 110 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--LNVE 187 (315) T ss_dssp HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--GCCC T ss_pred HHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEECCCCHHCCC--CCCC T ss_conf 76615899999288957771144665333126884478410788999999999987187652111243000012--3565 Q ss_pred CCEEEEECCCHH Q ss_conf 324786225207 Q gi|255764511|r 104 VDGVVFDLGVSS 115 (341) Q Consensus 104 vdgIl~DLGvSS 115 (341) +|.||.|-=.|+ T Consensus 188 fD~ILlDaPCSg 199 (315) T 1ixk_A 188 FDKILLDAPCTG 199 (315) T ss_dssp EEEEEEECCTTS T ss_pred CCEEEEECCCCC T ss_conf 437986176256 No 57 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Probab=97.39 E-value=0.002 Score=41.38 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=62.9 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974--8909998099899999999852148-852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~ 100 (341) |.+-.++.+...++..++|.=-|.|+.|..++.. +.+|+|+|.||+++..|+++++..+ +++.+..++...+ + T Consensus 110 l~~~e~~~~~l~~g~rVLdiGcG~g~~t~~~~a~~~g~~V~gIDisp~~~~~Ar~~~~~~g~~~v~~~~gD~~~l----~ 185 (298) T 3fpf_A 110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI----D 185 (298) T ss_dssp HHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG----G T ss_pred HHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCC----C T ss_conf 999999854899999899960685699999998568998999969999999999979864995089997355447----8 Q ss_pred HCCCCEEE Q ss_conf 12332478 Q gi|255764511|r 101 DKGVDGVV 108 (341) Q Consensus 101 ~~~vdgIl 108 (341) ...+|.|+ T Consensus 186 ~~~fDvV~ 193 (298) T 3fpf_A 186 GLEFDVLM 193 (298) T ss_dssp GCCCSEEE T ss_pred CCCCCEEE T ss_conf 99989899 No 58 >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Probab=97.37 E-value=0.0019 Score=41.55 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=61.8 Q ss_pred CCCHHHHHHHHH--CCCCCCEEEECCCCCCHHHHHHHH-H---CCEEEEECCCHHHHHHHHHHHHHCC------CCEEEE Q ss_conf 340098688660--838888899837688288999997-4---8909998099899999999852148------852771 Q gi|255764511|r 21 VPVLLEKVIALL--NPAPGKVILDATFGAGGYSRSFCK-M---GSNVIALDRDPFAVSCGQETMRDYK------EQFSLF 88 (341) Q Consensus 21 ~PVll~Evl~~l--~~~~~g~~iD~TlG~GGHS~~iL~-~---~~~liaiDrD~~ai~~a~~~l~~~~------~r~~~~ 88 (341) .|-|.-.+++.| .++||..++|.-.|.|--| ++|. . .++|+++|++++.+..|++++.... .+..+. T Consensus 60 ~P~~~a~~le~L~~~~~pg~~VLdiG~GsGy~t-a~la~lvg~~g~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~~~~~~ 138 (226) T 1i1n_A 60 APHMHAYALELLFDQLHEGAKALDVGSGSGILT-ACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLV 138 (226) T ss_dssp CHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHH-HHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEE T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH-HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEEEE T ss_conf 889999999972530899998999778889999-9999970888649998688999999999986548643102346799 Q ss_pred CCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 13278898765312332478622520 Q gi|255764511|r 89 QATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 89 ~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) .++..+. ......+|.|+.+.++. T Consensus 139 ~gd~~~~--~~~~~~fD~I~~~~~~~ 162 (226) T 1i1n_A 139 VGDGRMG--YAEEAPYDAIHVGAAAP 162 (226) T ss_dssp ESCGGGC--CGGGCCEEEEEECSBBS T ss_pred ECCCCCC--CCCCCCEEEEEECCCHH T ss_conf 6564566--65567601687526776 No 59 >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus HB8} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Probab=97.35 E-value=0.0029 Score=40.39 Aligned_cols=88 Identities=23% Similarity=0.259 Sum_probs=71.5 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCC Q ss_conf 886608388888998376882889999974---89099980998999999998521488527711327889876531233 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGV 104 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~v 104 (341) +...|.+++|..++|+--+-||.|..|.+. .+.|+|.|.++.-+....++++.++-+..+.+..-..+..... ..+ T Consensus 93 ~~~~L~~~~g~~VLDlCAAPGGKt~~la~~l~~~g~l~and~~~~R~~~l~~nl~r~g~~~~v~~~d~~~l~~~~~-~~f 171 (464) T 3m6w_A 93 VGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFG-TYF 171 (464) T ss_dssp HHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHC-SCE T ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCC-CCC T ss_conf 9997299999979883658765599999885358357622431788888988888618861687232243320466-644 Q ss_pred CEEEEECCCHHH Q ss_conf 247862252078 Q gi|255764511|r 105 DGVVFDLGVSSM 116 (341) Q Consensus 105 dgIl~DLGvSS~ 116 (341) |.||.|-=.|.. T Consensus 172 D~ILvDaPCSG~ 183 (464) T 3m6w_A 172 HRVLLDAPCSGE 183 (464) T ss_dssp EEEEEECCCCCG T ss_pred CEEEECCCCCCC T ss_conf 379844876667 No 60 >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} Probab=97.33 E-value=0.001 Score=43.32 Aligned_cols=92 Identities=14% Similarity=0.190 Sum_probs=72.9 Q ss_pred CCCCHHHHHHHHHCCCCC-CEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHH Q ss_conf 334009868866083888-88998376882889999974-890999809989999999985214--88527711327889 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPG-KVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~-g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i 95 (341) .-|=.+.+.|+.+.+.++ ..++|-=.|.|..|..+.+. +.+|+|+|..+.++..|+++..+. .+++.++++...++ T Consensus 29 g~~~~~~~~l~~l~~l~~~~rVLDlGCG~G~~~~~La~~~~~~v~gvD~S~~ml~~a~~~~~~~~~~~~v~~~~~d~~~l 108 (257) T 3f4k_A 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL 108 (257) T ss_dssp CCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC T ss_pred CCHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 99999999998360799979799971779799999998669979999684567788898776432100001113038876 Q ss_pred HHHHHHCCCCEEEEECCC Q ss_conf 876531233247862252 Q gi|255764511|r 96 QDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 96 ~~~l~~~~vdgIl~DLGv 113 (341) . ++...+|.|+.-..+ T Consensus 109 ~--~~~~~fD~V~~~~~l 124 (257) T 3f4k_A 109 P--FQNEELDLIWSEGAI 124 (257) T ss_dssp S--SCTTCEEEEEEESCS T ss_pred H--CCCCCCCEEEEHHHH T ss_conf 2--368852189860547 No 61 >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Probab=97.32 E-value=0.001 Score=43.35 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=57.1 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHH Q ss_conf 09868866083888889983768828899999748--909998099899999999852148-85277113278 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFS 93 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~ 93 (341) +..-+++.|.++||..++|.=.|.|..|..+.... ++|+|+|.|+++++.++++...++ .++.+++..+. T Consensus 13 ~ra~~l~~L~~~pg~~vLDiGcG~G~~a~~~a~~~~~~~V~avD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~ 85 (178) T 3hm2_A 13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAP 85 (178) T ss_dssp HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTT T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9999998559999799999766888899999996897769885089999999999999819997899994362 No 62 >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Probab=97.31 E-value=0.0027 Score=40.52 Aligned_cols=99 Identities=15% Similarity=-0.017 Sum_probs=67.4 Q ss_pred CCCCH---HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH Q ss_conf 33400---986886608388888998376882889999974--8909998099899999999852148852771132788 Q gi|255764511|r 20 HVPVL---LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341) Q Consensus 20 H~PVl---l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341) -.|++ ..+++..+ .+++.++|.=.|.|.++..+++. ..+++|+|.++.++..|++++...+-...+.+.... T Consensus 32 r~~~l~~~~~~i~~~~--~~~~~VLDiGCG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~- 108 (200) T 3fzg_A 32 RVATLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKE- 108 (200) T ss_dssp TGGGHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCH- T ss_pred HHHHHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHH- T ss_conf 7999999999999528--9998799958867877999998789978999859999999998510232885156651013- Q ss_pred HHHHHHHCCCCEEEEECCCHHHHHHHHHHCC Q ss_conf 9876531233247862252078887654073 Q gi|255764511|r 95 LQDYVPDKGVDGVVFDLGVSSMQIDCGDRGF 125 (341) Q Consensus 95 i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGF 125 (341) .......+|.|+.-- .-++++++.+++ T Consensus 109 --~~~~~~~fD~i~~~~--~l~~~~~~~~~l 135 (200) T 3fzg_A 109 --SDVYKGTYDVVFLLK--MLPVLKQQDVNI 135 (200) T ss_dssp --HHHTTSEEEEEEEET--CHHHHHHTTCCH T ss_pred --HHCCCCCCCEEEECC--CHHCCCCHHHHH T ss_conf --334478969898738--332378899999 No 63 >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Probab=97.30 E-value=0.0015 Score=42.21 Aligned_cols=92 Identities=17% Similarity=0.170 Sum_probs=69.6 Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHH Q ss_conf 00986886608388888998376882889999974-890999809989999999985214--885277113278898765 Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYV 99 (341) Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l 99 (341) .|++.+++.....+...++|++-|.|-=+-++.+. ..+|+|+|..++|+..|+++.+.+ .+++.++++++.+.... T Consensus 110 ~Lve~~~~~~~~~~~~~vlDlgtGSG~I~isla~~p~~~V~avDiS~~Al~vA~~Na~~~~~~~~~~~~~~d~~~~~~~- 188 (284) T 1nv8_A 110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE- 188 (284) T ss_dssp HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG- T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC- T ss_conf 9999888765037886799860460598876765201451676397999999999998448986299996321001411- Q ss_pred HHCCCCEEEEECCCHH Q ss_conf 3123324786225207 Q gi|255764511|r 100 PDKGVDGVVFDLGVSS 115 (341) Q Consensus 100 ~~~~vdgIl~DLGvSS 115 (341) ....||.|+.+-=|=+ T Consensus 189 ~~~~fDlIVSNPPYI~ 204 (284) T 1nv8_A 189 KFASIEMILSNPPYVK 204 (284) T ss_dssp GTTTCCEEEECCCCBC T ss_pred CCCCEEEEEECCCCCC T ss_conf 2675308996788888 No 64 >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.50A {Clostridium acetobutylicum atcc 824} SCOP: c.66.1.43 Probab=97.30 E-value=0.00054 Score=45.04 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=60.8 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 888889983768828899999748909998099899999999852148852771132788987653123324786 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) .++..++|.=.|.|.++..+.+.+.+++|+|..+.++..|+++....+.++.+++++..++. ....+|.|+. T Consensus 36 ~~~~~iLDlGCGtG~~~~~l~~~g~~v~gvD~S~~ml~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~V~~ 107 (246) T 1y8c_A 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN---INRKFDLITC 107 (246) T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC---CSCCEEEEEE T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH---CCCCCCCCCE T ss_conf 99892999807462999999974995999967499999876311223443222346677751---0334122412 No 65 >2pbf_A Protein-L-isoaspartate O-methyltransferase beta- aspartate methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum 3D7} Probab=97.30 E-value=0.003 Score=40.21 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=71.1 Q ss_pred CCCHHHHHHHHH--CCCCCCEEEECCCCCCHHHHHHHHH--------CCEEEEECCCHHHHHHHHHHHHHCC------CC Q ss_conf 340098688660--8388888998376882889999974--------8909998099899999999852148------85 Q gi|255764511|r 21 VPVLLEKVIALL--NPAPGKVILDATFGAGGYSRSFCKM--------GSNVIALDRDPFAVSCGQETMRDYK------EQ 84 (341) Q Consensus 21 ~PVll~Evl~~l--~~~~~g~~iD~TlG~GGHS~~iL~~--------~~~liaiDrD~~ai~~a~~~l~~~~------~r 84 (341) .|-|.--+++.| ..+|+..++|-=-|. |+..++|.. .++|+++|+|++....|+++++.+. ++ T Consensus 63 ~P~~~A~~l~~L~~~l~~g~~VLeIGtGs-GY~ta~la~~~~~l~~~~g~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~n 141 (227) T 2pbf_A 63 APHMHALSLKRLINVLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDN 141 (227) T ss_dssp CHHHHHHHHHHHTTTSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTT T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCHHHHCCCC T ss_conf 78999999998786479988699837997-39999999997652245653899970599999999999851044415575 Q ss_pred EEEECCCHHHHH--HHHHHCCCCEEEEECCCHH Q ss_conf 277113278898--7653123324786225207 Q gi|255764511|r 85 FSLFQATFSQLQ--DYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 85 ~~~~~~~F~~i~--~~l~~~~vdgIl~DLGvSS 115 (341) +.+++++..... .......+|.|+.+-++.. T Consensus 142 v~~~~gd~~~~~~~g~~~~~pfD~I~v~~a~~~ 174 (227) T 2pbf_A 142 FKIIHKNIYQVNEEEKKELGLFDAIHVGASASE 174 (227) T ss_dssp EEEEECCGGGCCHHHHHHHCCEEEEEECSBBSS T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEECHHH T ss_conf 899977732012557876788247999404356 No 66 >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative, SAM-dependent methyltransferase; HET: SAI; 1.94A {Leishmania major strain friedlin} SCOP: c.66.1.42 Probab=97.29 E-value=0.00097 Score=43.42 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=68.8 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCC Q ss_conf 986886608388888998376882889999974-8909998099899999999852148852771132788987653123 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~ 103 (341) ..+.|..+.+.+.+.++|+=.|.|..|..+|.. ..+|.|+|..+.++..|++.+... .++.+++.+..++. ..... T Consensus 82 s~~fl~~~~~~~~~~vLDiGcG~G~~t~~ll~~~~~~V~~vD~s~~~l~~a~~~~~~~-~~~~~~~~d~~~~~--~~~~~ 158 (254) T 1xtp_A 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM-PVGKFILASMETAT--LPPNT 158 (254) T ss_dssp HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS-SEEEEEESCGGGCC--CCSSC T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCC-CEEEEEECCHHHCC--CCCCC T ss_conf 9999985733589738996678859999999863985899919889999986401577-42799977875688--87776 Q ss_pred CCEEEEECCCHHHHHHHHH Q ss_conf 3247862252078887654 Q gi|255764511|r 104 VDGVVFDLGVSSMQIDCGD 122 (341) Q Consensus 104 vdgIl~DLGvSS~Qld~~~ 122 (341) +|.|+.-. +.+++.+++ T Consensus 159 fD~I~~~~--~l~hl~d~~ 175 (254) T 1xtp_A 159 YDLIVIQW--TAIYLTDAD 175 (254) T ss_dssp EEEEEEES--CGGGSCHHH T ss_pred CCEEEEEE--EHHCCCHHH T ss_conf 34676421--100476145 No 67 >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Probab=97.28 E-value=0.0017 Score=41.83 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=81.7 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC---CEEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCHH Q ss_conf 334009868866083888889983768828899999748---909998099899999999852148---85277113278 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG---SNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFS 93 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~---~~liaiDrD~~ai~~a~~~l~~~~---~r~~~~~~~F~ 93 (341) |+|--+-+.|..+.+.++..++|.=.|.|..|..+.+.+ .+|+|+|..+.++..+.++.+..+ .++.+..++.. T Consensus 20 ~y~~~~~~~l~~~~~~~~~~VLDiGCGtG~~t~~la~~~~~~~~V~gvD~S~~mi~~a~~~~~~~~~~~~~v~~~~~dae 99 (299) T 3g5t_A 20 SYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299) T ss_dssp CCCHHHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEECHH T ss_conf 84199999999517789996999826088999999996499987999859889999999999863667532468983377 Q ss_pred HHHHH----HHHCCCCEEEEECCCHHHHHHHHHHCCC-----CCCCCCE Q ss_conf 89876----5312332478622520788876540734-----4566410 Q gi|255764511|r 94 QLQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGFS-----FQKSGPL 133 (341) Q Consensus 94 ~i~~~----l~~~~vdgIl~DLGvSS~Qld~~~RGFS-----f~~dgpL 133 (341) ++.-. .....+|.|+.-.. .|+-|+.+.|. .+.+|.| T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~---~h~~d~~~~l~e~~r~LkpgG~l 145 (299) T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVEC---AHWFDFEKFQRSAYANLRKDGTI 145 (299) T ss_dssp CCGGGCTTTTTSSCEEEEEEESC---GGGSCHHHHHHHHHHHEEEEEEE T ss_pred HCCCCCCCCCCCCCCCEEEEECC---EECCCHHHHHHHHHHHHHCCCEE T ss_conf 65442123466556547887003---63156178999999995239989 No 68 >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Probab=97.28 E-value=0.00057 Score=44.92 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=63.4 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC----CCEEEECCCHHHHHHHHHH Q ss_conf 868866083888889983768828899999748909998099899999999852148----8527711327889876531 Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK----EQFSLFQATFSQLQDYVPD 101 (341) Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~----~r~~~~~~~F~~i~~~l~~ 101 (341) .+.+..+.|.+ |.++|.-.|.|.++..+.+.+.+|+|+|..++++..|++++...+ .++.++++++.++. .. T Consensus 73 ~~~~~~~~p~~-g~vLDlGcG~G~~~~~la~~g~~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~d~~~~~---~~ 148 (299) T 3g2m_A 73 REFATRTGPVS-GPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA---LD 148 (299) T ss_dssp HHHHHHHCCCC-SCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC---CS T ss_pred HHHHHHCCCCC-CCEEEEECCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCC---CC T ss_conf 99998349999-979999166778999999779979999699999999999998647663220447860321067---45 Q ss_pred CCCCEEEE Q ss_conf 23324786 Q gi|255764511|r 102 KGVDGVVF 109 (341) Q Consensus 102 ~~vdgIl~ 109 (341) ..+|.|+. T Consensus 149 ~~fD~v~~ 156 (299) T 3g2m_A 149 KRFGTVVI 156 (299) T ss_dssp CCEEEEEE T ss_pred CCCCEEEE T ss_conf 55312489 No 69 >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=97.28 E-value=0.00092 Score=43.56 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=67.7 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCC Q ss_conf 09868866083888889983768828899999748909998099899999999852148852771132788987653123 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~ 103 (341) +-.+++..+.+..+|.++|.-.|.|.++..+.+.+-+|+|+|..+.++..++++.. .+.|.++++.++. ..... T Consensus 29 ~~r~~i~~~~~~~~grVLDiGcG~G~~~~~la~~g~~v~gvD~S~~~l~~ar~~~~----~~~~~~~d~~~l~--~~~~~ 102 (203) T 3h2b_A 29 PDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHP----SVTFHHGTITDLS--DSPKR 102 (203) T ss_dssp TTHHHHHHHHHHCCSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCT----TSEEECCCGGGGG--GSCCC T ss_pred CCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC----CCEEEECCCCCCC--CCCCC T ss_conf 43999998515899849997378879999999779969999697889999974488----7349986210122--34566 Q ss_pred CCEEEEECCCHHHHHH Q ss_conf 3247862252078887 Q gi|255764511|r 104 VDGVVFDLGVSSMQID 119 (341) Q Consensus 104 vdgIl~DLGvSS~Qld 119 (341) +|.|+.- .+.+++. T Consensus 103 fD~I~~~--~vl~h~~ 116 (203) T 3h2b_A 103 WAGLLAW--YSLIHMG 116 (203) T ss_dssp EEEEEEE--SSSTTCC T ss_pred CCEEEEE--CCCCCCC T ss_conf 6689994--6511499 No 70 >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis V583} SCOP: c.66.1.46 Probab=97.28 E-value=0.0041 Score=39.36 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=68.6 Q ss_pred HHHHHH-HHHCC-CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHH Q ss_conf 098688-66083-8888899837688288999997489-0999809989999999985214--88527711327889876 Q gi|255764511|r 24 LLEKVI-ALLNP-APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDY 98 (341) Q Consensus 24 ll~Evl-~~l~~-~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~ 98 (341) .+.|.+ +.|.. .+|..++|+--|.|+-+...+.++. +|+++|.|++++..+++.++.. .+++.+++.+....-+. T Consensus 30 ~vrealfn~l~~~~~~~~vLDlf~GsG~~~~ea~srGa~~v~~Ve~~~~~~~~~~~N~~~~~~~~~~~i~~~d~~~~l~~ 109 (187) T 2fhp_A 30 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQ 109 (187) T ss_dssp HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHH T ss_conf 99999999865115999899988873789999997588835899942467767665554202456417886107888776 Q ss_pred -HH-HCCCCEEEEECCC Q ss_conf -53-1233247862252 Q gi|255764511|r 99 -VP-DKGVDGVVFDLGV 113 (341) Q Consensus 99 -l~-~~~vdgIl~DLGv 113 (341) .. ...+|.|++|==| T Consensus 110 ~~~~~~~fDlIflDPPY 126 (187) T 2fhp_A 110 FYEEKLQFDLVLLDPPY 126 (187) T ss_dssp HHHTTCCEEEEEECCCG T ss_pred HHHCCCCCCEEEECCCC T ss_conf 43026765359978987 No 71 >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A Probab=97.25 E-value=0.001 Score=43.25 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=54.2 Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC----------CCCEEEECCCHHHHHHHHHHCCCC Q ss_conf 8888998376882889999974890999809989999999985214----------885277113278898765312332 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY----------KEQFSLFQATFSQLQDYVPDKGVD 105 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~----------~~r~~~~~~~F~~i~~~l~~~~vd 105 (341) ....++|||.|.|..+..+-..+++|++++++|..-...+.-++.+ ..|+.+++++.-+...-+. ..+| T Consensus 88 ~~~~VlDaTaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~ra~~~~~~~~~~~~ri~l~~~Ds~~~L~~~~-~~~D 166 (258) T 2oyr_A 88 YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT-PRPQ 166 (258) T ss_dssp BCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCS-SCCS T ss_pred CCCEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHCCEEECCCHHHHHHHCC-CCCC T ss_conf 998489878774299999997799689984799999999999999872737789986323787387999986267-6688 Q ss_pred EEEEEC Q ss_conf 478622 Q gi|255764511|r 106 GVVFDL 111 (341) Q Consensus 106 gIl~DL 111 (341) -|++|= T Consensus 167 vIYlDP 172 (258) T 2oyr_A 167 VVYLDP 172 (258) T ss_dssp EEEECC T ss_pred EEEECC T ss_conf 799899 No 72 >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Probab=97.25 E-value=0.00059 Score=44.83 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=65.5 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCEEEEE Q ss_conf 83888889983768828899999748-909998099899999999852148-8527711327889876531233247862 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341) .+.++..++|+=.|.|..+..+|... .+|+|+|..+.++..|++++...+ .++.+++++..++. .....+|.|+.- T Consensus 76 ~~~~~~~vLDiGcG~G~~~~~ll~~~~~~v~~vD~s~~~l~~ar~~~~~~~~~~v~~~~~d~~~l~--~~~~~fD~I~~~ 153 (241) T 2ex4_A 76 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT--PEPDSYDVIWIQ 153 (241) T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC--CCSSCEEEEEEE T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHCC--CCCCCCCEEEEC T ss_conf 777887699901570786999997059989999999999999998776504663489957888715--775783189964 Q ss_pred CCCHHHHHHHHH Q ss_conf 252078887654 Q gi|255764511|r 111 LGVSSMQIDCGD 122 (341) Q Consensus 111 LGvSS~Qld~~~ 122 (341) . +-+++.+++ T Consensus 154 ~--vl~hl~d~~ 163 (241) T 2ex4_A 154 W--VIGHLTDQH 163 (241) T ss_dssp S--CGGGSCHHH T ss_pred C--CHHCCCCHH T ss_conf 6--510475678 No 73 >2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44 Probab=97.24 E-value=0.00052 Score=45.18 Aligned_cols=80 Identities=18% Similarity=0.139 Sum_probs=56.9 Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCC Q ss_conf 68866083888889983768828899999748909998099899999999852148-85277113278898765312332 Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVD 105 (341) Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vd 105 (341) ++++.+...+.|.++|.=.|.|.++..+.+++.+|+|+|.++.++..++++....+ +.+.+....+.. ...+..+| T Consensus 22 ~~~~~~~~l~pgrVLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~fD 98 (199) T 2i6g_A 22 DVLAAAXVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDXNPASMANLERIXAAEGLDNLQTDLVDLNT---LTFDGEYD 98 (199) T ss_dssp HHHHHHTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT---CCCCCCEE T ss_pred HHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHEECCC---CCCCCCEE T ss_conf 999984378989689985889789999985499899995871899999986421376410010000002---46687531 Q ss_pred EEEE Q ss_conf 4786 Q gi|255764511|r 106 GVVF 109 (341) Q Consensus 106 gIl~ 109 (341) .|+. T Consensus 99 ~V~~ 102 (199) T 2i6g_A 99 FILS 102 (199) T ss_dssp EEEE T ss_pred EEEE T ss_conf 9998 No 74 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Probab=97.24 E-value=0.0031 Score=40.13 Aligned_cols=77 Identities=10% Similarity=0.210 Sum_probs=63.2 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CC-EEEEECCCHHHHHHHHHHHHHC----------CCCEEE Q ss_conf 33400986886608388888998376882889999974-89-0999809989999999985214----------885277 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GS-NVIALDRDPFAVSCGQETMRDY----------KEQFSL 87 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~-~liaiDrD~~ai~~a~~~l~~~----------~~r~~~ 87 (341) =.+-++.++++.+.+.++.+|+|.-.|.|+-...+... +. +++|+|..++++..|++..+.+ ..++.| T Consensus 139 ~~~~~~~~i~~~~~l~~~~~~~DiG~G~G~~~~~~a~~~~~~~~~Giei~~~~~~~A~~~~~~~~~~~~~~g~~~~~v~~ 218 (416) T 1nw3_A 139 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 218 (416) T ss_dssp CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 40999999999708999988996688888899999997699889999799999999999999998877762677774599 Q ss_pred ECCCHHHHH Q ss_conf 113278898 Q gi|255764511|r 88 FQATFSQLQ 96 (341) Q Consensus 88 ~~~~F~~i~ 96 (341) ++++|.+.. T Consensus 219 ~~gD~~~~~ 227 (416) T 1nw3_A 219 ERGDFLSEE 227 (416) T ss_dssp EECCTTSHH T ss_pred EECCCCCCC T ss_conf 976656774 No 75 >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Probab=97.20 E-value=0.0045 Score=39.14 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=62.6 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCH-HHHHHHHHH-CCCCEEE Q ss_conf 38888899837688288999997489-0999809989999999985214--88527711327-889876531-2332478 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATF-SQLQDYVPD-KGVDGVV 108 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F-~~i~~~l~~-~~vdgIl 108 (341) .++|..++|+--|.||-|.+.+..+. +|+++|.++.|+..++++.+.. ..+..++.++- ..+...... ..+|.|+ T Consensus 215 ~~~g~~VLDl~~g~G~~si~aa~~ga~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~~~D~~~~l~~~~~~~~~FD~Ii 294 (396) T 2as0_A 215 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 294 (396) T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCCEEE T ss_conf 15897698817877888999997799746887188889999999999839974556996629888788886078998799 Q ss_pred EECCC Q ss_conf 62252 Q gi|255764511|r 109 FDLGV 113 (341) Q Consensus 109 ~DLGv 113 (341) +|.-. T Consensus 295 ~DpP~ 299 (396) T 2as0_A 295 LDPPA 299 (396) T ss_dssp ECCCC T ss_pred ECCHH T ss_conf 76512 No 76 >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransferase domain; 2.90A {Escherichia coli} Probab=97.19 E-value=0.0037 Score=39.67 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=70.2 Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCEE Q ss_conf 08388888998376882889999974---8909998099899999999852148-8527711327889876531233247 Q gi|255764511|r 32 LNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGV 107 (341) Q Consensus 32 l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdgI 107 (341) +.+.+|..++|+.-|-||.|..|... .+.|+|.|.++.-+....++++.++ .++.+.+.....+....+ ..+|.| T Consensus 113 ~~~~~g~~VLDlCAAPGgKT~~la~~~~~~g~lvAnD~~~~R~~~L~~nl~r~g~~nv~~~~~d~~~~~~~~~-~~fD~I 191 (479) T 2frx_A 113 ADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVP-EMFDAI 191 (479) T ss_dssp TTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHST-TCEEEE T ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCC-CCCCEE T ss_conf 2789998699947886589999998624682599653657778899998986389718999354001140131-016789 Q ss_pred EEECCCHHHHH Q ss_conf 86225207888 Q gi|255764511|r 108 VFDLGVSSMQI 118 (341) Q Consensus 108 l~DLGvSS~Ql 118 (341) |.|-=.|..=. T Consensus 192 LvDaPCSG~G~ 202 (479) T 2frx_A 192 LLDAPCSGEGV 202 (479) T ss_dssp EEECCCCCGGG T ss_pred EECCCCCCCCC T ss_conf 96598567864 No 77 >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Probab=97.19 E-value=0.0047 Score=39.02 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=65.2 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHHHHCCCCE Q ss_conf 8388888998376882889999974---8909998099899999999852148---852771132788987653123324 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYVPDKGVDG 106 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~---~r~~~~~~~F~~i~~~l~~~~vdg 106 (341) .......+++..-|.|.=|..+++. .++|+++|.|++....|++.+...+ .++.++.++..++-.-+....+|. T Consensus 53 ~~~~~~~vlEiGt~~G~stl~la~al~~~g~l~tIE~~~e~~~~Ar~~~~~ag~~~~rv~~i~gda~e~L~~l~~~~fDl 132 (221) T 3dr5_A 53 NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQL 132 (221) T ss_dssp CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEE T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCCCE T ss_conf 12389989997280579999999847999789999899999999999999668876246773277899878743478777 Q ss_pred EEEECCCH Q ss_conf 78622520 Q gi|255764511|r 107 VVFDLGVS 114 (341) Q Consensus 107 Il~DLGvS 114 (341) |+.|.--. T Consensus 133 VfiD~~k~ 140 (221) T 3dr5_A 133 VFGQVSPM 140 (221) T ss_dssp EEECCCTT T ss_pred EEECCCHH T ss_conf 99758867 No 78 >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus HB8} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Probab=97.18 E-value=0.0034 Score=39.91 Aligned_cols=84 Identities=21% Similarity=0.203 Sum_probs=63.5 Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHH-HHHHHHH-CCCCEE Q ss_conf 6083888889983768828899999748909998099899999999852148-852771132788-9876531-233247 Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQ-LQDYVPD-KGVDGV 107 (341) Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~-i~~~l~~-~~vdgI 107 (341) .+....|..++|+--|.||-|.++...+.+|+++|.++.|+..++++.+..+ +++.++.++-.+ +...... ..+|.| T Consensus 204 ~~~~~~g~~VLDl~~g~G~~s~~~a~~~~~V~~vD~s~~al~~a~~n~~~ng~~~~~~~~~D~~~~l~~~~~~~~~fD~V 283 (382) T 1wxx_A 204 YMERFRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLV 283 (382) T ss_dssp HGGGCCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEE T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCCCCEE T ss_conf 98762698041046778779999984677267204639999999999997286886678601777777778626799869 Q ss_pred EEECCCH Q ss_conf 8622520 Q gi|255764511|r 108 VFDLGVS 114 (341) Q Consensus 108 l~DLGvS 114 (341) ++|--.+ T Consensus 284 ilDpP~~ 290 (382) T 1wxx_A 284 VLDPPAF 290 (382) T ss_dssp EECCCCS T ss_pred EECCCCC T ss_conf 9827211 No 79 >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Probab=97.16 E-value=0.0018 Score=41.71 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=54.5 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC Q ss_conf 3400986886608388888998376882889999974890999809989999999985214 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY 81 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~ 81 (341) ++--+.+.++.|.+.+|+.++|-=.|.|.++..+.+.+.+|+|+|..+.+|..|+++.... T Consensus 7 ~~~~~~~~~~~l~~~~g~rVLD~GCG~G~~~~~La~~g~~v~gvD~S~~~i~~a~~~~~~~ 67 (203) T 1pjz_A 7 VNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQ 67 (203) T ss_dssp STHHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSC T ss_pred HCHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCC T ss_conf 4889999999649999997999737898889999967987788526599999999972345 No 80 >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1, methyltransferase domain, structural genomics; HET: MSE; 1.60A {Mesorhizobium loti MAFF303099} Probab=97.14 E-value=0.00093 Score=43.55 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=66.1 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCE Q ss_conf 88660838888899837688288999997489-09998099899999999852148852771132788987653123324 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdg 106 (341) +++.+-...|..++|.=.|.|.+|..+.+.+. +|+|+|..+.++..|+++... .++.+.++++.++. .....+|. T Consensus 35 ~~~~~p~~~g~rVLDiGCG~G~~~~~l~~~~~~~V~gvD~S~~~l~~a~~~~~~--~~v~~~~~d~~~~~--~~~~~fD~ 110 (243) T 3bkw_A 35 LRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD--TGITYERADLDKLH--LPQDSFDL 110 (243) T ss_dssp HHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS--SSEEEEECCGGGCC--CCTTCEEE T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCC--CCCCCCCCCCCCCC--CCCCCCCC T ss_conf 998579778899999788898999999975987899987579899999861344--43331002334466--55434545 Q ss_pred EEEECCCHHHHHHHHHHC Q ss_conf 786225207888765407 Q gi|255764511|r 107 VVFDLGVSSMQIDCGDRG 124 (341) Q Consensus 107 Il~DLGvSS~Qld~~~RG 124 (341) |+.- .+.+++.++.+. T Consensus 111 V~~~--~~l~~~~d~~~~ 126 (243) T 3bkw_A 111 AYSS--LALHYVEDVARL 126 (243) T ss_dssp EEEE--SCGGGCSCHHHH T ss_pred CCCE--EEEEECCCHHHH T ss_conf 6551--367616899999 No 81 >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Probab=97.14 E-value=0.0016 Score=42.08 Aligned_cols=68 Identities=18% Similarity=0.278 Sum_probs=53.9 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH Q ss_conf 09868866083888889983768828899999748909998099899999999852148852771132788 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341) .+.+.+..+ +++.++|.-.|.|.++..+.+.+.+|+|+|..+.++..++++.+..+-++.+++.++.+ T Consensus 20 ~l~~~~~~~---~~~~vLDlGcG~G~~~~~la~~G~~V~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~ 87 (202) T 2kw5_A 20 FLVSVANQI---PQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLAD 87 (202) T ss_dssp SHHHHHHHS---CSSEEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTT T ss_pred HHHHHHHCC---CCCCEEEECCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCHHH T ss_conf 999974138---98939998377899999999869914677778999999999888719955899822633 No 82 >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175, PSI-2; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Probab=97.14 E-value=0.0021 Score=41.21 Aligned_cols=89 Identities=15% Similarity=0.248 Sum_probs=67.4 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHH-----HCCCCEEEECCCH Q ss_conf 334009868866083888889983768828899999748--909998099899999999852-----1488527711327 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMR-----DYKEQFSLFQATF 92 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~-----~~~~r~~~~~~~F 92 (341) +.+|||-.. +.+..++.++|.--|.|.-+..+.... .+|+|+|.|++++..|++.++ .+.+|++++++.. T Consensus 23 ~DavLLAa~---~~~~~~~rVLDlG~G~G~i~l~La~r~~~~~v~gvEi~~~~~~lAr~N~~ln~~~~~~~ri~~~~~Di 99 (260) T 2ozv_A 23 MDAMLLASL---VADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV 99 (260) T ss_dssp CHHHHHHHT---CCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT T ss_pred HHHHHHHHH---CCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECHH T ss_conf 279999723---68889899999543676999999985899889999899999999999999865443323535896332 Q ss_pred H-----HHHHHHHHCCCCEEEEEC Q ss_conf 8-----898765312332478622 Q gi|255764511|r 93 S-----QLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 93 ~-----~i~~~l~~~~vdgIl~DL 111 (341) . .+...++...||-|+.+- T Consensus 100 ~~~~~~~~~~~~~~~~fD~VvsNP 123 (260) T 2ozv_A 100 TLRAKARVEAGLPDEHFHHVIMNP 123 (260) T ss_dssp TCCHHHHHHTTCCTTCEEEEEECC T ss_pred HCCCHHHHHHHHCCCCCCEEEECC T ss_conf 132212344331367626798669 No 83 >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Probab=97.11 E-value=0.0044 Score=39.18 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=60.1 Q ss_pred CCHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH Q ss_conf 400986886608-388888998376882889999974--8909998099899999999852148-852771132788987 Q gi|255764511|r 22 PVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD 97 (341) Q Consensus 22 PVll~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~ 97 (341) |=+..|-..... ..+|.+++|+--|-|+.+..+++. ..+|+|+|.+|+|+..++++++..+ .+...+++...++ T Consensus 104 ~r~~~Er~ri~~~v~~ge~VlDl~aG~G~~~i~~ak~~~~~~V~aiDinp~av~~l~~N~~~N~v~n~~~i~~D~r~~-- 181 (272) T 3a27_A 104 QGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-- 181 (272) T ss_dssp GGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-- T ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-- T ss_conf 987799999873458999999937865889999875069509999959999999999999984999759992776534-- Q ss_pred HHHHCCCCEEEEECC Q ss_conf 653123324786225 Q gi|255764511|r 98 YVPDKGVDGVVFDLG 112 (341) Q Consensus 98 ~l~~~~vdgIl~DLG 112 (341) .....+|-|++++- T Consensus 182 -~~~~~fD~Vimn~p 195 (272) T 3a27_A 182 -ELKDVADRVIMGYV 195 (272) T ss_dssp -CCTTCEEEEEECCC T ss_pred -CCCCCCCEEEECCC T ss_conf -55788889997895 No 84 >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Probab=97.10 E-value=0.0014 Score=42.30 Aligned_cols=76 Identities=16% Similarity=0.248 Sum_probs=54.4 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC Q ss_conf 86886608388888998376882889999974890999809989999999985214885277113278898765312332 Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 (341) Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vd 105 (341) .+.+....| +++.++|.=.|.|.++..+.+.+.+|+|+|..|+++..|+++.. ++.++++++.++. .+..+| T Consensus 31 ~~~~~~~~~-~~~~VLDiGcG~G~~~~~la~~g~~v~giD~S~~~l~~a~~~~~----~~~~~~~d~~~~~---~~~~fD 102 (239) T 3bxo_A 31 ADLVRSRTP-EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLP----DATLHQGDMRDFR---LGRKFS 102 (239) T ss_dssp HHHHHHHCT-TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCT----TCEEEECCTTTCC---CSSCEE T ss_pred HHHHHHHCC-CCCEEEEEECCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC----CCCCCCCCCCCCC---CCCCCC T ss_conf 999997489-94989998175849999999739969999696788788863365----4422322112677---331432 Q ss_pred EEEE Q ss_conf 4786 Q gi|255764511|r 106 GVVF 109 (341) Q Consensus 106 gIl~ 109 (341) .|+. T Consensus 103 ~v~~ 106 (239) T 3bxo_A 103 AVVS 106 (239) T ss_dssp EEEE T ss_pred HHEE T ss_conf 1001 No 85 >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Probab=97.10 E-value=0.0016 Score=42.04 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=63.5 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898765 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) .++.+++.+.+.+ .+++.++|.=.|.|.++..+. .+.+|+|+|.+++++..|+++....+.++.++++++.++. T Consensus 19 ~y~~~~~~i~~~~--~~~~~VLD~GCG~G~~~~~la-~~~~v~giD~s~~~l~~a~~~~~~~~~~i~~~~~d~~~~~--- 92 (243) T 3d2l_A 19 PYPEWVAWVLEQV--EPGKRIADIGCGTGTATLLLA-DHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE--- 92 (243) T ss_dssp CHHHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHT-TTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC--- T ss_pred CHHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHH-HCCEEEEEECCHHHHHHHHHHHHHCCCEEEECCCCHHCCC--- T ss_conf 7999999999868--999999996887879999986-1857999988518899988765301202331012000011--- Q ss_pred HHCCCCEEEE Q ss_conf 3123324786 Q gi|255764511|r 100 PDKGVDGVVF 109 (341) Q Consensus 100 ~~~~vdgIl~ 109 (341) ....+|.++. T Consensus 93 ~~~~~d~v~~ 102 (243) T 3d2l_A 93 LPEPVDAITI 102 (243) T ss_dssp CSSCEEEEEE T ss_pred CCCCCCCHHH T ss_conf 2434343134 No 86 >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Probab=97.02 E-value=0.0019 Score=41.58 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=47.2 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCC--CEEEECCC Q ss_conf 838888899837688288999997489-099980998999999998521488--52771132 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKE--QFSLFQAT 91 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~--r~~~~~~~ 91 (341) ...++..++|.-.|.||++..+.+.+. +|+|+|..++++..|+++.+..+. ++.+.... T Consensus 61 ~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~a~~r~~~~~~~~~~~f~~~d 122 (298) T 1ri5_A 61 YTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 122 (298) T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESC T ss_pred HCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEECC T ss_conf 48995989996370878999999669985887589999999999998752887523778645 No 87 >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 1pry_A Probab=97.02 E-value=0.0022 Score=41.12 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=64.0 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974---8909998099899999999852148852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~ 100 (341) ++.-.++.|.++||..++|.-.|.|+-+..+.+. .|+|+|+|..|.++..+.++.+..+ ++..+...-.....+.. T Consensus 61 ~i~~~l~~l~i~pG~~VLDlG~G~G~~~~~la~~vg~~G~V~avD~s~~~l~~l~~~~~~~~-ni~~v~~da~~~~~~~~ 139 (227) T 1g8a_A 61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR-NIVPILGDATKPEEYRA 139 (227) T ss_dssp HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT-TEEEEECCTTCGGGGTT T ss_pred HHHCCHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCHHHCCC T ss_conf 99703531698999999997178788999999984899669999899999999998787669-83499987679446544 Q ss_pred -HCCCCEEEEEC Q ss_conf -12332478622 Q gi|255764511|r 101 -DKGVDGVVFDL 111 (341) Q Consensus 101 -~~~vdgIl~DL 111 (341) ...||.|+.|+ T Consensus 140 ~~~~vd~v~~~~ 151 (227) T 1g8a_A 140 LVPKVDVIFEDV 151 (227) T ss_dssp TCCCEEEEEECC T ss_pred CCCEEEEEEEEE T ss_conf 567199999760 No 88 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Probab=97.02 E-value=0.0027 Score=40.58 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=60.8 Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC Q ss_conf 688660838888899837688288999997489-0999809989999999985214885277113278898765312332 Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 (341) Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vd 105 (341) .+...|.+.++..++|.=.|.|.+|..+.+.++ +|+|+|.-+.++..|+++... .++.+.+.+..++. +....+| T Consensus 35 ~i~~~lp~~~g~~VLDiGcG~G~~~~~l~~~g~~~v~giD~S~~~i~~a~~~~~~--~~~~~~~~d~~~l~--~~~~~fD 110 (253) T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS--PVVCYEQKAIEDIA--IEPDAYN 110 (253) T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC--TTEEEEECCGGGCC--CCTTCEE T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCC--CCCCCCCCCCCCCC--CCCCCCC T ss_conf 9998468789698999837784999999964999899994850656899874034--44322222224566--5675555 Q ss_pred EEEE Q ss_conf 4786 Q gi|255764511|r 106 GVVF 109 (341) Q Consensus 106 gIl~ 109 (341) .|+. T Consensus 111 ~V~~ 114 (253) T 3g5l_A 111 VVLS 114 (253) T ss_dssp EEEE T ss_pred CCCC T ss_conf 3421 No 89 >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Probab=97.02 E-value=0.00058 Score=44.84 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=65.4 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 88888998376882889999974890999809989999999985214885277113278898765312332478622520 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) .++..++|.=.|.|..+..+.+.+.+++|+|..+.++..|+++... .++.+.++...++. .+...+|.|+.-. + T Consensus 52 ~~~~~VLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~--~~~~~~~~~~~~l~--~~~~~fD~i~~~~--~ 125 (242) T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG--PDLSFIKGDLSSLP--FENEQFEAIMAIN--S 125 (242) T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB--TTEEEEECBTTBCS--SCTTCEEEEEEES--C T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCC--CCCCCCCCCCCCCC--CCCCCEEEEEEEC--H T ss_conf 9969799965888599999996499899997974667998750344--42222234435678--8878568985500--2 Q ss_pred HHHHHHHHHCC Q ss_conf 78887654073 Q gi|255764511|r 115 SMQIDCGDRGF 125 (341) Q Consensus 115 S~Qld~~~RGF 125 (341) -++++++...| T Consensus 126 l~hi~d~~~~l 136 (242) T 3l8d_A 126 LEWTEEPLRAL 136 (242) T ss_dssp TTSSSCHHHHH T ss_pred HHHCCCHHHHH T ss_conf 88447999999 No 90 >1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Probab=97.01 E-value=0.0059 Score=38.34 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=60.3 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCC-----CEEEECCCHHHHHHH Q ss_conf 098688660838888899837688288999997489099980998999999998521488-----527711327889876 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKE-----QFSLFQATFSQLQDY 98 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~-----r~~~~~~~F~~i~~~ 98 (341) ...-+++.|...++..++|.=.|.|.++..+.+.+.+|+|+|..++++..|+++...... ++.+...++-.++.- T Consensus 44 ~~~~~~~~l~~~~~~~vLDiGcG~G~~~~~la~~g~~v~gvD~s~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292) T 1xva_A 44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 123 (292) T ss_dssp HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC T ss_conf 99999996413184999990478849999999779969999899999999999998644465631356641110124434 Q ss_pred HH-HCCCCEEEE Q ss_conf 53-123324786 Q gi|255764511|r 99 VP-DKGVDGVVF 109 (341) Q Consensus 99 l~-~~~vdgIl~ 109 (341) ++ ...+|.|+. T Consensus 124 ~~~~~~fD~v~~ 135 (292) T 1xva_A 124 VPAGDGFDAVIC 135 (292) T ss_dssp SCCTTCEEEEEE T ss_pred CCCCCCEEEEEE T ss_conf 566676139999 No 91 >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} Probab=97.00 E-value=0.011 Score=36.48 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=62.8 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHH Q ss_conf 34009868866083888889983768828899999748909998099899999999852148-85277113278898765 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYV 99 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l 99 (341) ...|++.+++++.+.++ .++|.=-|.|..|..+-+...+|+|+|.+++|+..|++..+..+ ++..|+.++-.++.+.+ T Consensus 199 ~~~l~~~v~~~~~~~~~-~vlDLycG~Gt~sl~La~~~~~V~gvE~~~~av~~A~~Na~~n~i~N~~f~~~~a~~~~~~~ 277 (369) T 3bt7_A 199 NIQMLEWALDVTKGSKG-DLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM 277 (369) T ss_dssp HHHHHHHHHHHTTTCCS-EEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHH T ss_pred HHHHHHHHHHHHCCCCC-EEEECCCCCCHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH T ss_conf 99999999987156776-48873789658899987308578899970267899999999759887189972599999887 No 92 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Probab=97.00 E-value=0.0049 Score=38.85 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=73.1 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHHH Q ss_conf 09868866083888889983768828899999748--90999809989999999985214-8852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~i~~~l~ 100 (341) |-..+.+.+...||..++|.=.|.|..+..+.+.+ ++|+|+|.++.++..++...+.. ..++.+..+...++. .. T Consensus 25 ~~~~~~~~~~~~pg~rVLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~--~~ 102 (276) T 3mgg_A 25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP--FE 102 (276) T ss_dssp HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC--SC T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCHHHCC--CC T ss_conf 9999875569999998999558588999999987999789999795676322221122115566421533523204--77 Q ss_pred HCCCCEEEEECCCHHHHHHHHHH Q ss_conf 12332478622520788876540 Q gi|255764511|r 101 DKGVDGVVFDLGVSSMQIDCGDR 123 (341) Q Consensus 101 ~~~vdgIl~DLGvSS~Qld~~~R 123 (341) ...+|.|+.-..+..+ .++.. T Consensus 103 ~~sfD~V~~~~~l~~~--~d~~~ 123 (276) T 3mgg_A 103 DSSFDHIFVCFVLEHL--QSPEE 123 (276) T ss_dssp TTCEEEEEEESCGGGC--SCHHH T ss_pred CCCCCCHHHHHHHHHC--HHHHH T ss_conf 7881211111246313--05999 No 93 >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research center for structural genomics, protein structure initiative, PSI-2; 2.20A {Pyrococcus furiosus} Probab=96.97 E-value=0.0033 Score=39.95 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=56.7 Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCE Q ss_conf 86608388888998376882889999974--8909998099899999999852148852771132788987653123324 Q gi|255764511|r 29 IALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDG 106 (341) Q Consensus 29 l~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdg 106 (341) +......++..++|.-.|.|+.+..+... +.+++|+|.++.++..|+++++.++-...+...+-+.+ ....+..+|. T Consensus 48 ~~~~~~~~~~~vLDig~G~G~~~~~~a~~~~~~~v~~vDi~~~~~~~a~~n~~~~~~~~~i~~~~~~~~-~~~~~~~fD~ 126 (230) T 3evz_A 48 FLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGII-KGVVEGTFDV 126 (230) T ss_dssp HHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSS-TTTCCSCEEE T ss_pred HHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCH-HHCCCCCCCE T ss_conf 998457898989994074439999999977998799998863112467766886066517998521101-2135765248 Q ss_pred EEEE Q ss_conf 7862 Q gi|255764511|r 107 VVFD 110 (341) Q Consensus 107 Il~D 110 (341) |+.| T Consensus 127 Iv~N 130 (230) T 3evz_A 127 IFSA 130 (230) T ss_dssp EEEC T ss_pred EEEC T ss_conf 9989 No 94 >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Probab=96.96 E-value=0.0029 Score=40.35 Aligned_cols=80 Identities=11% Similarity=-0.002 Sum_probs=56.6 Q ss_pred CCCCCEEEECCCCCCHHHHHHHH-HCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 38888899837688288999997-48909998099899999999852148-85277113278898765312332478622 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCK-MGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~-~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdgIl~DL 111 (341) ..+|..++|+=-|.|+.....|. ...+|+|+|.|+.|+..+++..+..+ +++.+++++..+.........+|.|+.|. T Consensus 170 ~~~g~~vldlg~g~g~~l~~~l~~~~~~V~~vDi~~~~l~~a~~~a~~~g~~~i~~~~~d~~~~~~~~~~~~fD~v~~dp 249 (373) T 2qm3_A 170 DLENKDIFVLGDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373) T ss_dssp CSTTCEEEEESCTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC T ss_pred CCCCCEEEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEECC T ss_conf 77899799997992499999997699989999797999999999999819974399853086632454078889899899 Q ss_pred CC Q ss_conf 52 Q gi|255764511|r 112 GV 113 (341) Q Consensus 112 Gv 113 (341) =+ T Consensus 250 p~ 251 (373) T 2qm3_A 250 PE 251 (373) T ss_dssp CS T ss_pred CC T ss_conf 98 No 95 >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Probab=96.95 E-value=0.002 Score=41.41 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=51.0 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 3340098688660838888899837688288999997489099980998999999998521 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341) +.......++..+.+..++.++|.=.|.|+++..+.+.+.+|+|+|.++.++..|+++... T Consensus 36 ~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~l~~~g~~v~gvD~S~~~i~~A~~~~~~ 96 (227) T 3e8s_A 36 RRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAG 96 (227) T ss_dssp HHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSS T ss_pred HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCC T ss_conf 8877899999971558959899976898399999997699699986817889999986014 No 96 >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Probab=96.93 E-value=0.002 Score=41.43 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=49.8 Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH Q ss_conf 8334009868866083888889983768828899999748909998099899999999852 Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 (341) Q Consensus 19 ~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341) .+.|.++-|..-.-...||+.++|.-.|.|.++..+.+.+.+|+|+|.++.++..|+++.. T Consensus 31 ~~~~~~~~~~~l~~~l~pg~rVLDvGCGtG~~a~~La~~g~~V~giD~S~~mi~~Ar~~~~ 91 (226) T 3m33_A 31 GPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAP 91 (226) T ss_dssp SSCTTHHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCT T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHCC T ss_conf 9886799999999518999979998846586457775168689965799999999998589 No 97 >3hvi_A Catechol O-methyltransferase; neurotransmitter degradation, alternative initiation, catecholamine metabolism, cell membrane, cytoplasm; HET: 619; 1.20A {Rattus norvegicus} PDB: 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 2zlb_A 2zth_A* 2zvj_A* 3a7d_A* 3bwm_A* 3bwy_A* 3a7e_A* Probab=96.91 E-value=0.013 Score=36.23 Aligned_cols=80 Identities=11% Similarity=0.210 Sum_probs=63.0 Q ss_pred CCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHH----CCCCE Q ss_conf 8888998376882889999974---89099980998999999998521--488527711327889876531----23324 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPD----KGVDG 106 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~----~~vdg 106 (341) +...+++--.|.|+=|..+.+. .++|+++|.+++....|++.++. +.+++.++.+++.++-.-+.. ..+|. T Consensus 58 kpk~iLEiGt~~G~Stl~la~al~~~g~v~~id~~~~~~~~ar~~~~~agl~~~I~l~~gd~~e~l~~l~~~~~~~~fD~ 137 (221) T 3hvi_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221) T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEECCCHHHHHHHHHHHHHHTCTTTEEEECSCHHHHGGGHHHHHCCSCCSE T ss_pred CCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCEEE T ss_conf 99999997147429999999857999789999888412589999999759977415883779999998775347653258 Q ss_pred EEEECCCHH Q ss_conf 786225207 Q gi|255764511|r 107 VVFDLGVSS 115 (341) Q Consensus 107 Il~DLGvSS 115 (341) |++|---+. T Consensus 138 vfiD~~~~~ 146 (221) T 3hvi_A 138 VFLDHWKDR 146 (221) T ss_dssp EEECSCGGG T ss_pred EEECCCCHH T ss_conf 997467020 No 98 >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=96.91 E-value=0.0013 Score=42.53 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=59.9 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 38888899837688288999997489099980998999999998521488527711327889876531233247862252 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341) ..+++.++|.=.|.|.++..+.+.+.+|+|+|..+.++..|+++... .+++++..+++ +++..+|.|+. +|- T Consensus 52 ~~~~~~VLDiGCGtG~~~~~la~~g~~v~giD~S~~ml~~Ak~~~~~-----~~~~~~~~~l~--~~~~~fD~Iis-~~~ 123 (260) T 2avn_A 52 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLP--FPSGAFEAVLA-LGD 123 (260) T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCC--SCTTCEEEEEE-CSS T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCC-----CCCCCHHHHCC--CCCCCCCHHHH-HHH T ss_conf 79969899989999888999986199899993523788999883632-----20001575088--86467356550-577 Q ss_pred HHHHHHHHHHCC Q ss_conf 078887654073 Q gi|255764511|r 114 SSMQIDCGDRGF 125 (341) Q Consensus 114 SS~Qld~~~RGF 125 (341) .-.++.++++.| T Consensus 124 vl~hi~d~~~~l 135 (260) T 2avn_A 124 VLSYVENKDKAF 135 (260) T ss_dssp HHHHCSCHHHHH T ss_pred HHHCCCCHHHHH T ss_conf 741677899999 No 99 >1r18_A Protein-L-isoaspartate(D-aspartate)-O- methyltransferase; isomerization, protein repair, S- adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Probab=96.89 E-value=0.0077 Score=37.61 Aligned_cols=92 Identities=15% Similarity=0.274 Sum_probs=67.1 Q ss_pred CCCHHHHHHHHH--CCCCCCEEEECCCCCCHHHHHHHHH---------CCEEEEECCCHHHHHHHHHHHHHC------CC Q ss_conf 340098688660--8388888998376882889999974---------890999809989999999985214------88 Q gi|255764511|r 21 VPVLLEKVIALL--NPAPGKVILDATFGAGGYSRSFCKM---------GSNVIALDRDPFAVSCGQETMRDY------KE 83 (341) Q Consensus 21 ~PVll~Evl~~l--~~~~~g~~iD~TlG~GGHS~~iL~~---------~~~liaiDrD~~ai~~a~~~l~~~------~~ 83 (341) -|-|.-.+++.| +.+|+..++|.=-|.| +..++|.. +.+|+++|.|++.+..|+++++.. -. T Consensus 67 ~P~~~a~~l~~L~~~l~pg~~VLeIG~GtG-y~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~A~~~l~~~~~~~l~~~ 145 (227) T 1r18_A 67 APHMHAFALEYLRDHLKPGARILDVGSGSG-YLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG 145 (227) T ss_dssp CHHHHHHHHHHTTTTCCTTCEEEEESCTTS-HHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCHHCCCC T ss_conf 369999999976753899988999579977-9999999985331577766899994789999999999976051020566 Q ss_pred CEEEECCCHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 52771132788987653123324786225207 Q gi|255764511|r 84 QFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 84 r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS 115 (341) ++.+.+++..+. +.....+|.|+.+-++.. T Consensus 146 nv~~~~~D~~~g--~~~~~~fD~I~v~~a~~~ 175 (227) T 1r18_A 146 QLLIVEGDGRKG--YPPNAPYNAIHVGAAAPD 175 (227) T ss_dssp SEEEEESCGGGC--CGGGCSEEEEEECSCBSS T ss_pred CEEEEECCCCCC--CCCCCCCCEEEEEECHHH T ss_conf 369997784557--765565236888511555 No 100 >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Probab=96.87 E-value=0.0019 Score=41.50 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=69.6 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHC Q ss_conf 986886608388888998376882889999974--890999809989999999985214885277113278898765312 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDK 102 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~ 102 (341) ..+.+..+.+.++..++|.=.|.|..+..+.+. .++++|+|..+.++..|++++ .++.+......++ .... T Consensus 22 ~~~ll~~~~~~~~~rVLDiGCGtG~~t~~la~~~~~~~v~gvD~S~~ml~~A~~~~----~~v~~~~~d~~~~---~~~~ 94 (259) T 2p35_A 22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL----PNTNFGKADLATW---KPAQ 94 (259) T ss_dssp HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS----TTSEEEECCTTTC---CCSS T ss_pred HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHC----CCCCCEEEEHHHC---CCCC T ss_conf 99999528888989899981628699999998789987999989879999999725----6631201424212---4354 Q ss_pred CCCEEEEECCCHHHHHHHHHHCCC Q ss_conf 332478622520788876540734 Q gi|255764511|r 103 GVDGVVFDLGVSSMQIDCGDRGFS 126 (341) Q Consensus 103 ~vdgIl~DLGvSS~Qld~~~RGFS 126 (341) .+|.|+.- .+-+.+.|+++.|. T Consensus 95 ~fD~V~s~--~~l~~~~d~~~~l~ 116 (259) T 2p35_A 95 KADLLYAN--AVFQWVPDHLAVLS 116 (259) T ss_dssp CEEEEEEE--SCGGGSTTHHHHHH T ss_pred CCCEECCC--CEEEECCCHHHHHH T ss_conf 55564120--15774688899999 No 101 >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Probab=96.86 E-value=0.0023 Score=41.03 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=72.1 Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH Q ss_conf 83340098688660838888899837688288999997489099980998999999998521488527711327889876 Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 (341) Q Consensus 19 ~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~ 98 (341) .+.|.+++....++ .++.++|.=.|.|..+..+.+.+.+++|+|..++++..+++++. +++.++++.+.++. T Consensus 28 ~~~~~~~~~~~~~~---~~~~VLDiGCG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~---~~~~~~~~~~~~~~-- 99 (250) T 2p7i_A 28 VMHPFMVRAFTPFF---RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK---DGITYIHSRFEDAQ-- 99 (250) T ss_dssp THHHHHHHHHGGGC---CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC---SCEEEEESCGGGCC-- T ss_pred HHHHHHHHHHHCCC---CCCCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHH---CCCCEEECCHHHCC-- T ss_conf 99999999853107---99939999289879999999509979999671688889998630---35420202222126-- Q ss_pred HHHCCCCEEEEECCCHHHHHHHHHHCC Q ss_conf 531233247862252078887654073 Q gi|255764511|r 99 VPDKGVDGVVFDLGVSSMQIDCGDRGF 125 (341) Q Consensus 99 l~~~~vdgIl~DLGvSS~Qld~~~RGF 125 (341) ....+|.|++ .-+-.++.+|.+-+ T Consensus 100 -~~~~fD~I~~--~~vleh~~dp~~~L 123 (250) T 2p7i_A 100 -LPRRYDNIVL--THVLEHIDDPVALL 123 (250) T ss_dssp -CSSCEEEEEE--ESCGGGCSSHHHHH T ss_pred -CCCCCCHHHH--HHHHHHCCCHHHHH T ss_conf -6556657886--42464068999999 No 102 >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Probab=96.86 E-value=0.0067 Score=38.01 Aligned_cols=97 Identities=13% Similarity=0.198 Sum_probs=74.5 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898765 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) +.+-.++.+++...+.++..+++.--|.|.=|..+|+...+|+|++.|+......++++..+ +++.++++.+-+++ . T Consensus 14 ~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~~~~v~avEiD~~l~~~L~~~~~~~-~n~~ii~~D~l~~~--~ 90 (244) T 1qam_A 14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH-DNFQVLNKDILQFK--F 90 (244) T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC-CSEEEECCCGGGCC--C T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCC-CCEEEEECHHHCCC--C T ss_conf 79999999999567899997999738871999999855583069985301779999741447-76577300122256--5 Q ss_pred HHCCCCEEEEECCC--HHHHHH Q ss_conf 31233247862252--078887 Q gi|255764511|r 100 PDKGVDGVVFDLGV--SSMQID 119 (341) Q Consensus 100 ~~~~vdgIl~DLGv--SS~Qld 119 (341) +...-.-|+.+|=| ||.=+. T Consensus 91 ~~~~~~~vv~NLPYnIss~Il~ 112 (244) T 1qam_A 91 PKNQSYKIFGNIPYNISTDIIR 112 (244) T ss_dssp CSSCCCEEEEECCGGGHHHHHH T ss_pred CCCCCEEEEEECHHHHHHHHHH T ss_conf 4467547997430552389998 No 103 >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assembly S-adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Probab=96.85 E-value=0.0071 Score=37.84 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=75.9 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898765 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) +.+-.++.+++...+.++..+++.--|.|.=|.++|+...+|+|++.|+..+...++++..+ .++.++++.+-.++ + T Consensus 34 ~d~~i~~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~-~n~~ii~~D~l~~d--~ 110 (295) T 3gru_A 34 IDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY-NNIEIIWGDALKVD--L 110 (295) T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHC-SSEEEEESCTTTSC--G T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHC-CCEEEEECCCCCCC--H T ss_conf 89999999999638999995999799746999999816896699998879999999767642-77368851210377--1 Q ss_pred HHCCCCEEEEECCC--HHHHH Q ss_conf 31233247862252--07888 Q gi|255764511|r 100 PDKGVDGVVFDLGV--SSMQI 118 (341) Q Consensus 100 ~~~~vdgIl~DLGv--SS~Ql 118 (341) ......-|+.+|=| ||.=+ T Consensus 111 ~~~~~~~vv~NLPYnIss~il 131 (295) T 3gru_A 111 NKLDFNKVVANLPYQISSPIT 131 (295) T ss_dssp GGSCCSEEEEECCGGGHHHHH T ss_pred HHCCCCEEEEEEHHHHCCHHH T ss_conf 333755378620264254113 No 104 >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold; HET: SAM; 2.00A {Mycobacterium tuberculosis H37RV} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Probab=96.80 E-value=0.012 Score=36.42 Aligned_cols=86 Identities=17% Similarity=0.195 Sum_probs=67.4 Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHH Q ss_conf 00986886608388888998376882889999974-8909998099899999999852148--85277113278898765 Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYV 99 (341) Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l 99 (341) =+++.+++.|.+++|..++|.=.|.||-+..+.+. +.+|+|+|.+++.+..++++....+ +++.+....+.++ T Consensus 77 ~k~~~i~~~l~l~~g~rVLDIGCG~G~~a~~~a~~~g~~v~gi~is~~q~~~a~~~~~~~gl~~~~~~~~~d~~~~---- 152 (318) T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---- 152 (318) T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---- T ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHH---- T ss_conf 9999999963999999898978873699999998369638999899999999999987638741001654106550---- Q ss_pred HHCCCCEEEEECCC Q ss_conf 31233247862252 Q gi|255764511|r 100 PDKGVDGVVFDLGV 113 (341) Q Consensus 100 ~~~~vdgIl~DLGv 113 (341) ...+|.|+.-.-+ T Consensus 153 -~~~fD~i~si~~~ 165 (318) T 2fk8_A 153 -AEPVDRIVSIEAF 165 (318) T ss_dssp -CCCCSEEEEESCG T ss_pred -CCCCCEEEEHHHH T ss_conf -3787635204688 No 105 >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14 Probab=96.78 E-value=0.0066 Score=38.04 Aligned_cols=99 Identities=10% Similarity=0.113 Sum_probs=66.6 Q ss_pred CCHHHHHHHHHC--CCCCCEEEECCCCCCHHHHHHHHH----CCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHH Q ss_conf 400986886608--388888998376882889999974----8909998099899999999852148--85277113278 Q gi|255764511|r 22 PVLLEKVIALLN--PAPGKVILDATFGAGGYSRSFCKM----GSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFS 93 (341) Q Consensus 22 PVll~Evl~~l~--~~~~g~~iD~TlG~GGHS~~iL~~----~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~ 93 (341) ..+.+.+...+. .+++..++|.=.|.|..+..+++. +.+++|+|..+.++..|+++++.++ .++.+.++.+. T Consensus 42 ~~~~~~i~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~k~~~~~~~~~~~~~~~d~~ 121 (244) T 1im8_A 42 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR 121 (244) T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTT T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 99999999999986799798999200222889998863369980899976978999999864431065432110123210 Q ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHC Q ss_conf 8987653123324786225207888765407 Q gi|255764511|r 94 QLQDYVPDKGVDGVVFDLGVSSMQIDCGDRG 124 (341) Q Consensus 94 ~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RG 124 (341) ++ +..+.|.++.-..+.-...++..+- T Consensus 122 ~~----~~~~~d~i~~~~~l~~~~~~d~~~~ 148 (244) T 1im8_A 122 HV----EIKNASMVILNFTLQFLPPEDRIAL 148 (244) T ss_dssp TC----CCCSEEEEEEESCGGGSCGGGHHHH T ss_pred CC----CCCCCCEEEEEEEEEECCHHHHHHH T ss_conf 00----1243212688642230561788999 No 106 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Probab=96.76 E-value=0.0038 Score=39.60 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=55.5 Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 6083888889983768828899999748909998099899999999852148852771132788987653123324786 Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) .|...+.+.++|.-.|.|.++..+.+.+.+|+|+|..+.|+..|+++.... .++.+....+.+. .....+|.|+. T Consensus 46 ~l~~~~~~~vLDvGcG~G~~~~~la~~~~~v~gvD~s~~~l~~a~~~~~~~-~~i~~~~~d~~~~---~~~~~fD~V~~ 120 (216) T 3ofk_A 46 SLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW-SHISWAATDILQF---STAELFDLIVV 120 (216) T ss_dssp HTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC-SSEEEEECCTTTC---CCSCCEEEEEE T ss_pred HCCCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCC-CEEECCCCCHHHH---CCCCCCCEEEE T ss_conf 479989990999638898999999970998999969989999999861546-2231010202232---35787148998 No 107 >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Probab=96.74 E-value=0.002 Score=41.34 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=58.7 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHC Q ss_conf 986886608388888998376882889999974890999809989999999985214--885277113278898765312 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDK 102 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~~ 102 (341) +.+.++.+.. +.+.++|.=.|.|.++..+.+.+.+|+|+|..+.|+..++++.... ..++.+.++++.++. ... T Consensus 56 l~~~~~~~~~-~~~rVLdlGCG~G~~~~~la~~g~~V~giD~S~~ai~~a~~~~~~~~~~~~v~~~~~D~~~~~---~~~ 131 (235) T 3lcc_A 56 IVHLVDTSSL-PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR---PTE 131 (235) T ss_dssp HHHHHHTTCS-CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC---CSS T ss_pred HHHHHHHCCC-CCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHHHC---CCC T ss_conf 9999985799-999489943888789999986698799974669999999998764154421002325676717---556 Q ss_pred CCCEEE Q ss_conf 332478 Q gi|255764511|r 103 GVDGVV 108 (341) Q Consensus 103 ~vdgIl 108 (341) .+|.|+ T Consensus 132 ~fD~i~ 137 (235) T 3lcc_A 132 LFDLIF 137 (235) T ss_dssp CEEEEE T ss_pred CCCEEE T ss_conf 645799 No 108 >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Probab=96.73 E-value=0.015 Score=35.82 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=49.6 Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHHHHH-HH-CCCCEEEE Q ss_conf 888899837688288999997489-09998099899999999852148---85277113278898765-31-23324786 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQDYV-PD-KGVDGVVF 109 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~---~r~~~~~~~F~~i~~~l-~~-~~vdgIl~ 109 (341) +|..++|+--|.||-|.+.+..+. +|+++|.++.|+..+++..+..+ .+..+++++..+..+.+ .. ..+|.|++ T Consensus 220 ~g~rVLdlf~~tG~~si~Aa~~GA~~V~~vD~s~~al~~a~~N~~~Ngl~~~~~~~i~~d~~~~l~~~~~~~~~fD~Iil 299 (396) T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396) T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE T ss_pred CCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEE T ss_conf 99868753886688999999779975999989899999999999982998434578942299999999875359998998 Q ss_pred ECC Q ss_conf 225 Q gi|255764511|r 110 DLG 112 (341) Q Consensus 110 DLG 112 (341) |-= T Consensus 300 DPP 302 (396) T 3c0k_A 300 DPP 302 (396) T ss_dssp CCS T ss_pred CCC T ss_conf 783 No 109 >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Probab=96.72 E-value=0.0029 Score=40.36 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=60.6 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHH Q ss_conf 86886608388888998376882889999974---890999809989999999985214--8852771132788987653 Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~ 100 (341) ..+...| .||..++|.=.|.|+++..+... +.+|+|+|.++++++.|+++.... .+++.+.++++.++. . T Consensus 110 ~~~~~~l--~~g~~vLDvGcG~G~~~~~l~~~~~p~~~v~gvD~S~~~l~~A~~~~~~~~l~~~~~~~~~d~~~l~---~ 184 (305) T 3ocj_A 110 RALQRHL--RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD---T 184 (305) T ss_dssp HHHHHHC--CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC---C T ss_pred HHHHHCC--CCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHC---C T ss_conf 9999409--9959999944747699999999718995899997988899999753022012322233200088742---4 Q ss_pred HCCCCEEEEEC Q ss_conf 12332478622 Q gi|255764511|r 101 DKGVDGVVFDL 111 (341) Q Consensus 101 ~~~vdgIl~DL 111 (341) ..++|.|+... T Consensus 185 ~~~~d~iv~~~ 195 (305) T 3ocj_A 185 REGYDLLTSNG 195 (305) T ss_dssp CSCEEEEECCS T ss_pred CCCCCEEEEEC T ss_conf 66401799813 No 110 >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI- 2, protein structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Probab=96.72 E-value=0.018 Score=35.23 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=67.4 Q ss_pred CCCCCCCCHHHHHHH------HHC-CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC--C-CCE Q ss_conf 607833400986886------608-388888998376882889999974890999809989999999985214--8-852 Q gi|255764511|r 16 TIGDHVPVLLEKVIA------LLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--K-EQF 85 (341) Q Consensus 16 ~~~~H~PVll~Evl~------~l~-~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~-~r~ 85 (341) +.+.|+-+.++.-.. .+. ..++..++|+=-|.||.|.+.+..+.+|+++|..+.|+..|+++.+-. . .++ T Consensus 126 ~~g~ktG~FlDqr~nr~~l~~~~~~~~kg~rVLdlF~ytG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~lNg~~~~~~ 205 (332) T 2igt_A 126 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPI 205 (332) T ss_dssp CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCE T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCE T ss_conf 77875634521066899999986631589758872677777899999789849999387999999999999848988858 Q ss_pred EEECCCHHH-HHHHHHH-CCCCEEEEEC Q ss_conf 771132788-9876531-2332478622 Q gi|255764511|r 86 SLFQATFSQ-LQDYVPD-KGVDGVVFDL 111 (341) Q Consensus 86 ~~~~~~F~~-i~~~l~~-~~vdgIl~DL 111 (341) .+++++.-+ +...... ..+|.|++|- T Consensus 206 ~~i~~Da~~~l~~~~~~g~~fD~IilDP 233 (332) T 2igt_A 206 RWICEDAMKFIQREERRGSTYDIILTDP 233 (332) T ss_dssp EEECSCHHHHHHHHHHHTCCBSEEEECC T ss_pred EEEECCHHHHHHHHHHHCCCCCEEEECC T ss_conf 9992679999999997189976899789 No 111 >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Probab=96.69 E-value=0.0068 Score=37.94 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=60.7 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-CCC Q ss_conf 8866083888889983768828899999748--9099980998999999998521488527711327889876531-233 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-KGV 104 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~-~~v 104 (341) -++.|.++||..++|.-.|.|..+..+.+.. ++|+|+|..|.++..++++.+.. .++.++...-.....+... ..+ T Consensus 66 ~l~~l~ikpg~~VLDlGcGtG~~~~~la~~~~~G~V~aVDiSp~mi~~a~~~a~~~-~ni~~i~~d~~~~~~~~~~~~~v 144 (230) T 1fbn_A 66 GLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-ENIIPILGDANKPQEYANIVEKV 144 (230) T ss_dssp TCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-TTEEEEECCTTCGGGGTTTSCCE T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCEE T ss_conf 57626879999999967977989999997589965999979989999999877644-87317984135864235666359 Q ss_pred CEEEEECC Q ss_conf 24786225 Q gi|255764511|r 105 DGVVFDLG 112 (341) Q Consensus 105 dgIl~DLG 112 (341) |-++.|+- T Consensus 145 d~i~~~~~ 152 (230) T 1fbn_A 145 DVIYEDVA 152 (230) T ss_dssp EEEEECCC T ss_pred EEEEEECC T ss_conf 99971012 No 112 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Probab=96.67 E-value=0.0047 Score=38.97 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=67.8 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 8388888998376882889999974---8909998099899999999852148852771132788987653123324786 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) .+.++..++|.-.|.|..+..+.+. +++|+|+|.++.++..|+++.+..+.++.+.++++.++. ....+|.|+. T Consensus 19 k~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~---~~~~fD~V~~ 95 (284) T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE---LNDKYDIAIC 95 (284) T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC---CSSCEEEEEE T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEECCCCCCCC---CCCCEEEEEE T ss_conf 5699897999548798999999985779988999849899999999866641420012001112479---8997579988 Q ss_pred ECCCHHHHHHHHHHCC Q ss_conf 2252078887654073 Q gi|255764511|r 110 DLGVSSMQIDCGDRGF 125 (341) Q Consensus 110 DLGvSS~Qld~~~RGF 125 (341) ... .+++.+++..+ T Consensus 96 ~~~--l~h~~d~~~~l 109 (284) T 3gu3_A 96 HAF--LLHMTTPETML 109 (284) T ss_dssp ESC--GGGCSSHHHHH T ss_pred HHH--HHCCCCHHHHH T ss_conf 647--65678899999 No 113 >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.90A {Bacillus halodurans c-125} Probab=96.67 E-value=0.015 Score=35.72 Aligned_cols=99 Identities=14% Similarity=0.150 Sum_probs=74.4 Q ss_pred CCCCCCHHHHHHHHHC----CCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEEC Q ss_conf 7833400986886608----388888998376882889999974--890999809989999999985214--88527711 Q gi|255764511|r 18 GDHVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQ 89 (341) Q Consensus 18 ~~H~PVll~Evl~~l~----~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~ 89 (341) ..+.|++-.++.++|. ..+...+++-..|.|.-|..+... .++|+++|.+++....|++.++.. .+++.++. T Consensus 32 ~~~~pii~~~~~~~l~~l~~~~~~~~VLEIGtg~G~Stl~la~~~p~~~v~tiD~~~~~~~~A~~~~~~~gl~~~I~~~~ 111 (233) T 2gpy_A 32 EQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF 111 (233) T ss_dssp HTTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC T ss_pred HCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEE T ss_conf 75999778899999999988658998999611212999999987899779999704899999999999974212112653 Q ss_pred CCHHHHHHHHH-HCCCCEEEEECCCHHH Q ss_conf 32788987653-1233247862252078 Q gi|255764511|r 90 ATFSQLQDYVP-DKGVDGVVFDLGVSSM 116 (341) Q Consensus 90 ~~F~~i~~~l~-~~~vdgIl~DLGvSS~ 116 (341) ++..++...+. ...+|.|+.|-.-..+ T Consensus 112 gda~d~l~~l~~~~~fD~ifiD~~k~~~ 139 (233) T 2gpy_A 112 GDALQLGEKLELYPLFDVLFIDAAKGQY 139 (233) T ss_dssp SCGGGSHHHHTTSCCEEEEEEEGGGSCH T ss_pred CCHHHHHHHHCCCCCCCEEEECCCHHHH T ss_conf 3287777751135776289972766768 No 114 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Probab=96.66 E-value=0.0058 Score=38.41 Aligned_cols=63 Identities=19% Similarity=0.283 Sum_probs=48.7 Q ss_pred CCCHHHHHHHH--HCCCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHCCC Q ss_conf 34009868866--083888889983768828899999748-9099980998999999998521488 Q gi|255764511|r 21 VPVLLEKVIAL--LNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKE 83 (341) Q Consensus 21 ~PVll~Evl~~--l~~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~~~ 83 (341) ..+|+...++- +.+..+..++|--.|.||+....++.+ .+|+|+|.++++|..|++|...... T Consensus 31 K~~lI~~~~~~~~~~~~~~~~VLDlgcG~GgDl~K~~~~~~~~vvGiDiS~~~I~~A~~R~~~~~~ 96 (302) T 2vdw_A 31 KTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96 (302) T ss_dssp HHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCC T ss_conf 999999998775026888997999950004527999966998899997989999999999997212 No 115 >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, NYSGXRC, structural genomics; 2.00A {Lactobacillus delbrueckii subsp} Probab=96.63 E-value=0.019 Score=35.13 Aligned_cols=94 Identities=18% Similarity=0.159 Sum_probs=59.2 Q ss_pred HHCCCCCCCC-CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCC-CCEEEE Q ss_conf 1011607833-40098688660838888899837688288999997489-09998099899999999852148-852771 Q gi|255764511|r 12 AIHHTIGDHV-PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK-EQFSLF 88 (341) Q Consensus 12 ~~~~~~~~H~-PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~-~r~~~~ 88 (341) .+.--++.|. .-|.-+.|+.. +.++..++|.=.|.|..+.++.+.+. +|+|+|.||+|+..|+++.+..+ ..+... T Consensus 36 ~~aFGtG~H~tT~l~l~~L~~~-~~~~~~VLDlGcGsG~~~~~~ak~g~~~V~~iDis~~al~~A~~N~~~n~~~~~~~~ 114 (205) T 3grz_A 36 GLAFGTGNHQTTQLAMLGIERA-MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQ 114 (205) T ss_dssp C-----CCHHHHHHHHHHHHHH-CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEE T ss_pred CCCCCCCCCHHHHHHHHHHHHC-CCCCCEEEEEECCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEE T ss_conf 4466799888999999999834-799599999952622999999875996899998989999999999997376676887 Q ss_pred CCCHHHHHHHHHHCCCCEEEEE Q ss_conf 1327889876531233247862 Q gi|255764511|r 89 QATFSQLQDYVPDKGVDGVVFD 110 (341) Q Consensus 89 ~~~F~~i~~~l~~~~vdgIl~D 110 (341) ....-. .....+|-|+++ T Consensus 115 ~~~~~~----~~~~~fD~Ivan 132 (205) T 3grz_A 115 KTSLLA----DVDGKFDLIVAN 132 (205) T ss_dssp ESSTTT----TCCSCEEEEEEE T ss_pred ECCHHH----CCCCCCCEEEEC T ss_conf 343444----045556899985 No 116 >3id6_C Fibrillarin-like rRNA/TRNA 2'-O- methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, RNA-binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* Probab=96.62 E-value=0.0094 Score=37.03 Aligned_cols=84 Identities=13% Similarity=0.050 Sum_probs=58.8 Q ss_pred HHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH-HHCCC Q ss_conf 86608388888998376882889999974---890999809989999999985214885277113278898765-31233 Q gi|255764511|r 29 IALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV-PDKGV 104 (341) Q Consensus 29 l~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l-~~~~v 104 (341) ++.+.++||..++|--.|.|..+..+.+. .++|||+|..|.++..+.++.+..+ ++..+.....+...+- ....+ T Consensus 69 l~~~~lkpG~~VLdLG~G~G~~~~~la~~Vg~~G~V~aVD~s~~~l~~a~~~a~~~~-n~~~v~~d~~~~~~~~~~~~~v 147 (232) T 3id6_C 69 LKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP-NIFPLLADARFPQSYKSVVENV 147 (232) T ss_dssp CSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCT-TEEEEECCTTCGGGTTTTCCCE T ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCC-CCCCEEECCCCHHHCCCCCCEE T ss_conf 330588999999996771889999999971568769999799999999997656546-7763010146754537777369 Q ss_pred CEEEEECCC Q ss_conf 247862252 Q gi|255764511|r 105 DGVVFDLGV 113 (341) Q Consensus 105 dgIl~DLGv 113 (341) |.|+.|+.. T Consensus 148 d~i~~~~~~ 156 (232) T 3id6_C 148 DVLYVDIAQ 156 (232) T ss_dssp EEEEECCCC T ss_pred EEEEEECCC T ss_conf 999985257 No 117 >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Probab=96.62 E-value=0.023 Score=34.57 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=62.4 Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCEEEEECC Q ss_conf 888899837688288999997489--09998099899999999852148-852771132788987653123324786225 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341) ++-+++|-=+|.|.++..+.+.++ +++|+|..+.++..+.++.+..+ +++.++++++..+.+......+|.|+...- T Consensus 38 ~~p~vLEIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~da~~l~~~~~~~~~d~v~i~fp 117 (213) T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213) T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCEEEEEEECC T ss_conf 99529998035889999999868998289998359999999999998388544678436588775137764358887135 No 118 >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Probab=96.62 E-value=0.009 Score=37.15 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=50.1 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH Q ss_conf 388888998376882889999974890999809989999999985214885277113278898 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341) ..++..++|.=.|.|..+..+.+.+.+|+|+|.++.++..|+++... .++.+.+.+..++. T Consensus 54 ~~~~~~vLDvGCG~G~~~~~la~~g~~v~gvD~s~~~i~~Ar~~~~~--~~~~~~~~d~~~~~ 114 (245) T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA--ANISYRLLDGLVPE 114 (245) T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC--TTEEEEECCTTCHH T ss_pred CCCCCEEEEECCCCCHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCC--CCEEEEEEECCCCC T ss_conf 69998589975879787999763784599850999999999986746--75069995013653 No 119 >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Probab=96.61 E-value=0.0046 Score=39.08 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=64.7 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECC Q ss_conf 888889983768828899999748--909998099899999999852148852771132788987653123324786225 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341) .+++.++|.=.|.|..+..++..+ .+++|+|.++.++..+++++...+.++.+....... ..+...+|.|++ - T Consensus 131 ~~~~~vlD~GcG~G~~~~~l~~~~~~~~v~g~D~s~~~i~~a~~~~~~~~~~~~~~~~d~~~---~~~~~~fD~v~~--~ 205 (281) T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLE---DRLDEPADVTLL--L 205 (281) T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTT---SCCCSCCSEEEE--T T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECHHH---HCCCCCCCEEEE--H T ss_conf 99986998389888899999974997749996599999999999998668873899813544---076556567765--3 Q ss_pred CHHHHHHHHHHC Q ss_conf 207888765407 Q gi|255764511|r 113 VSSMQIDCGDRG 124 (341) Q Consensus 113 vSS~Qld~~~RG 124 (341) -+-+++++.+++ T Consensus 206 ~vl~hl~~~~~~ 217 (281) T 3lcv_B 206 KTLPCLETQQRG 217 (281) T ss_dssp TCHHHHHHHSTT T ss_pred HHHHHCCHHHHH T ss_conf 448754927799 No 120 >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Probab=96.59 E-value=0.0085 Score=37.34 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=62.3 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC------CCCEEEECCCHHHH Q ss_conf 09868866083888889983768828899999748--90999809989999999985214------88527711327889 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY------KEQFSLFQATFSQL 95 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~------~~r~~~~~~~F~~i 95 (341) .++.+++.|....+..++|.=.|.|..+..+++.+ .+|+|+|.+++++..|++++... ..++.+.......+ T Consensus 17 r~~~v~~~l~~~~~~rVLDvGcG~G~~~~~l~~~~~~~~v~gvD~s~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (217) T 3jwh_A 17 RMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQ 96 (217) T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSC T ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHC T ss_conf 99999997332183989998188879999999847652252103899999999998876245311222210012664344 Q ss_pred HHHHHHCCCCEEEEEC Q ss_conf 8765312332478622 Q gi|255764511|r 96 QDYVPDKGVDGVVFDL 111 (341) Q Consensus 96 ~~~l~~~~vdgIl~DL 111 (341) . .+...+|.|+.-. T Consensus 97 ~--~~~~~fD~I~~~~ 110 (217) T 3jwh_A 97 D--KRFHGYDAATVIE 110 (217) T ss_dssp C--GGGCSCSEEEEES T ss_pred H--HCCCCCCEEEEEH T ss_conf 0--0047656550103 No 121 >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Probab=96.59 E-value=0.023 Score=34.49 Aligned_cols=69 Identities=29% Similarity=0.430 Sum_probs=53.6 Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCH Q ss_conf 009868866083888889983768828899999748--909998099899999999852148-8527711327 Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF 92 (341) Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F 92 (341) .|++.++......+ ..++|.-.|.|-=+.++.... .+++|+|.+++|+..|+++.+.++ .++.++++++ T Consensus 97 ~lv~~~l~~~~~~~-~~ilDlgtGsG~I~i~la~~~p~~~v~a~Dis~~Al~~A~~Na~~~~~~~v~~~~~D~ 168 (276) T 2b3t_A 97 CLVEQALARLPEQP-CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW 168 (276) T ss_dssp HHHHHHHHHSCSSC-CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST T ss_pred HHHHHHHHHCCCCC-CEEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 99999987514578-6176414653299999998689875886417668899999999974998779997576 No 122 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Probab=96.58 E-value=0.011 Score=36.66 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=57.9 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CC-EEEEECCCHHHHHHHHHHHHHCCC Q ss_conf 11607833400986886608388888998376882889999974-89-099980998999999998521488 Q gi|255764511|r 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GS-NVIALDRDPFAVSCGQETMRDYKE 83 (341) Q Consensus 14 ~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~-~liaiDrD~~ai~~a~~~l~~~~~ 83 (341) ....++=-|=++.++++.+.+.++.+++|-=.|.|+.+..+... ++ +++|+|..+.++..|++..+++.. T Consensus 220 ~~vYGE~~p~~i~~Il~~l~Lkpgd~fLDLGCG~G~vvl~aA~~~g~~~viGIDis~~~l~~A~~~~~e~~~ 291 (433) T 1u2z_A 220 NYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKK 291 (433) T ss_dssp GGCCCCBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHH T ss_pred CCEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHH T ss_conf 763000688999999998289999989974899989999999975998799997999999999999999887 No 123 >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Probab=96.58 E-value=0.0086 Score=37.29 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=50.2 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC Q ss_conf 098688660838888899837688288999997489--0999809989999999985214 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY 81 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~ 81 (341) .+.++++.|...++..++|.=.|.|..+..+.+.++ +|+|+|.++.++..|++++... T Consensus 17 r~~~v~~~l~~~~~~rVLDvGCG~G~~~~~La~~~~~~~v~gvD~s~~~l~~a~~~~~~~ 76 (219) T 3jwg_A 17 RLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID 76 (219) T ss_dssp HHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC T ss_conf 999999964112849899981878999999998389745632259999999999986550 No 124 >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 Probab=96.55 E-value=0.019 Score=35.09 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=59.9 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCHHH-HHHHHHH-CCCCEE Q ss_conf 38888899837688288999997489-09998099899999999852148---852771132788-9876531-233247 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQ-LQDYVPD-KGVDGV 107 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~---~r~~~~~~~F~~-i~~~l~~-~~vdgI 107 (341) ..+|..++|+--|.||-|.+.+..+. .|+++|.++.|+..+++..+-.+ +++.++.++.-+ +...... ..+|.| T Consensus 210 ~~~g~rVLDlfs~tGgfsl~aa~~gA~~V~~vD~s~~a~~~a~~N~~~N~l~~~~~~~~~~D~~~~L~~~~~~~~~fD~I 289 (385) T 2b78_A 210 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385) T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE T ss_pred HCCCCCEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCEE T ss_conf 55999168636768789999987799588852676999999999899848997644777266999999998648988889 Q ss_pred EEE Q ss_conf 862 Q gi|255764511|r 108 VFD 110 (341) Q Consensus 108 l~D 110 (341) ++| T Consensus 290 ilD 292 (385) T 2b78_A 290 IID 292 (385) T ss_dssp EEC T ss_pred EEC T ss_conf 989 No 125 >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Probab=96.53 E-value=0.0093 Score=37.06 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=54.9 Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 60838888899837688288999997489-09998099899999999852148852771132788987653123324786 Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) .+....|..++|.-.|.|.-+.+.+..++ +|+|+|.|++|+..|++++. ++.+++++..++ ..++|-|+. T Consensus 46 ~~gd~~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~a~~N~~----~~~~~~~d~~~~-----~~~fD~Vi~ 116 (200) T 1ne2_A 46 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----GVNFMVADVSEI-----SGKYDTWIM 116 (200) T ss_dssp HHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT----TSEEEECCGGGC-----CCCEEEEEE T ss_pred HCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH----HCCCEEEEHHHC-----CCCCCEEEE T ss_conf 66998939899875751099999996799879675089999999999898----578537652105-----775488987 Q ss_pred ECCC Q ss_conf 2252 Q gi|255764511|r 110 DLGV 113 (341) Q Consensus 110 DLGv 113 (341) |-=+ T Consensus 117 NPPf 120 (200) T 1ne2_A 117 NPPF 120 (200) T ss_dssp CCCC T ss_pred CCCC T ss_conf 7986 No 126 >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Probab=96.51 E-value=0.014 Score=35.96 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=73.5 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHH Q ss_conf 334009868866083888889983768828899999748909998099899999999852148--852771132788987 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQD 97 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~ 97 (341) ..|-.++.+++...+.++..++..--|.|.=|.++|+.+.+|+|++.|+..+...++++..+. .++.++++.+-.++- T Consensus 12 ~d~~i~~~Iv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~ii~~D~l~~d~ 91 (285) T 1zq9_A 12 KNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 91 (285) T ss_dssp CCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC T ss_pred CCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCEEEECHHHHHCHH T ss_conf 79899999999708999997999689721999999804996699998789999999876201210034454066541105 Q ss_pred HHHHCCCCEEEEECCCH Q ss_conf 65312332478622520 Q gi|255764511|r 98 YVPDKGVDGVVFDLGVS 114 (341) Q Consensus 98 ~l~~~~vdgIl~DLGvS 114 (341) ....-++.+|=|+ T Consensus 92 ----~~~~~vVgNLPYn 104 (285) T 1zq9_A 92 ----PFFDTCVANLPYQ 104 (285) T ss_dssp ----CCCSEEEEECCGG T ss_pred ----HHHHHEECCCHHH T ss_conf ----5443211022165 No 127 >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Geobacter sulfurreducens pca} Probab=96.50 E-value=0.015 Score=35.66 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=66.2 Q ss_pred CCCCCHHHHHHHHHC----CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEEC Q ss_conf 833400986886608----388888998376882889999974---890999809989999999985214--88527711 Q gi|255764511|r 19 DHVPVLLEKVIALLN----PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQ 89 (341) Q Consensus 19 ~H~PVll~Evl~~l~----~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~ 89 (341) .+.|.+-.++-.+|. ..+...+++--.|.|.-|..+.+. +++|+++|.|++.++.|++.++.. .+++.+++ T Consensus 35 ~~~p~i~~~~g~~L~~L~~~~~~~~ILEiGtg~G~st~~la~~~~~~g~v~~id~~~~~~~~ar~~~~~~g~~~~i~~~~ 114 (210) T 3c3p_A 35 RNIPIVDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQV 114 (210) T ss_dssp TTCCCCCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEE T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE T ss_conf 39997898999999999885680989995081439999999975568199999775103789998798729873267861 Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 32788987653123324786225207 Q gi|255764511|r 90 ATFSQLQDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 90 ~~F~~i~~~l~~~~vdgIl~DLGvSS 115 (341) ++..++.. ....+|.|+.|..... T Consensus 115 gda~~~~~--~~~~fDlifiD~~~~~ 138 (210) T 3c3p_A 115 GDPLGIAA--GQRDIDILFMDCDVFN 138 (210) T ss_dssp SCHHHHHT--TCCSEEEEEEETTTSC T ss_pred CCHHHCCC--CCCCCCEEEECCCHHH T ss_conf 34543022--3688678998575666 No 128 >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Probab=96.48 E-value=0.0096 Score=36.98 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=49.5 Q ss_pred CCCHHHHHHHHH--CCCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHC Q ss_conf 340098688660--83888889983768828899999748-90999809989999999985214 Q gi|255764511|r 21 VPVLLEKVIALL--NPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDY 81 (341) Q Consensus 21 ~PVll~Evl~~l--~~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~ 81 (341) ..+|....+..+ ...++..++|.-.|.||+....++.+ ++++|+|.++++|..|+++.... T Consensus 17 K~~LI~~~~~~~~~~~~~~~~VLDlGCG~G~dl~k~~~~~~~~v~GiDis~~~i~~A~~r~~~~ 80 (313) T 3bgv_A 17 KSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDM 80 (313) T ss_dssp HHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC T ss_conf 9999999998743157897979997347768899999659997999959999999999998854 No 129 >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 2zzm_A* Probab=96.47 E-value=0.011 Score=36.62 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=48.0 Q ss_pred CCCHHHHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH Q ss_conf 3400986886608-388888998376882889999974890999809989999999985214--8852771132788 Q gi|255764511|r 21 VPVLLEKVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ 94 (341) Q Consensus 21 ~PVll~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~ 94 (341) .|.+..|-..... ..++..++|+--|.|+-+.++. ...+|+|+|.+|.|+..++++.+.. .+++.++++...+ T Consensus 179 ~~~~~~er~ri~~~~~~~~~vlD~f~g~G~~~i~~~-~~~~v~a~d~n~~a~~~~~~N~~~N~~~~~v~~~~~D~~~ 254 (336) T 2yx1_A 179 SPRLGGERARIMKKVSLNDVVVDMFAGVGPFSIACK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVRE 254 (336) T ss_dssp CGGGHHHHHHHHHHCCTTCEEEETTCTTSHHHHHTT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGG T ss_pred CCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHCC-CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHH T ss_conf 476107888766411789889996576467665313-5516999979999999999999982998758999575345 No 130 >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Probab=96.47 E-value=0.036 Score=33.27 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=64.5 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974-890999809989999999985214--8852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~ 100 (341) +++.+++.+.+++|..++|.=.|-||-+..+.+. +++|+|++..++-+..++++.++. .+++.+....+... T Consensus 60 k~~~~~~~l~l~~g~rVLDiGCGwG~~a~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~~~~~d~~~~----- 134 (302) T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----- 134 (302) T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----- T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC----- T ss_conf 999999970899989898857885399999999869838998377889999999998740021233444043234----- Q ss_pred HCCCCEEEE Q ss_conf 123324786 Q gi|255764511|r 101 DKGVDGVVF 109 (341) Q Consensus 101 ~~~vdgIl~ 109 (341) +..+|.|+. T Consensus 135 ~~~fD~ivS 143 (302) T 3hem_A 135 DEPVDRIVS 143 (302) T ss_dssp CCCCSEEEE T ss_pred CCCCCEEEE T ss_conf 788675531 No 131 >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Probab=96.47 E-value=0.0072 Score=37.80 Aligned_cols=52 Identities=29% Similarity=0.533 Sum_probs=43.3 Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH Q ss_conf 68866083888889983768828899999748909998099899999999852 Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 (341) Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341) ..++.+.+ +++.++|.-.|.|..+..+.+.+.+|+|+|..++++..|+++.. T Consensus 38 ~ll~~~~~-~~~~vLDlGCG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~~ 89 (195) T 3cgg_A 38 RLIDAMAP-RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP 89 (195) T ss_dssp HHHHHHSC-TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT T ss_pred HHHHHCCC-CCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHCC T ss_conf 99996589-99989997688859999999769989999797277899997302 No 132 >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Probab=96.46 E-value=0.032 Score=33.60 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=75.2 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH Q ss_conf 33400986886608388888998376882889999974-8909998099899999999852148-852771132788987 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD 97 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~ 97 (341) -.|-|+-.+++.|+++++..+++-=-|. |+..++|.. .+.+++++.+++....++++++..+ .++.+++++..+ . T Consensus 61 s~P~~~A~~l~~L~~~~g~~VLeIGsGt-GY~tAlla~l~~~v~~ve~~~~~~~~a~~~~~~~~~~nv~~~~gdg~~--g 137 (210) T 3lbf_A 61 SQPYMVARMTELLELTPQSRVLEIGTGS-GYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQ--G 137 (210) T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG--C T ss_pred CCCHHHHHHHHHCCCCCCCEEEEECCCH-HHHHHHHHHHHCEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC--C T ss_conf 4436747678756568998799967840-699999998628325454222899999999886266671799857776--7 Q ss_pred HHHHCCCCEEEEECCCHH Q ss_conf 653123324786225207 Q gi|255764511|r 98 YVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 98 ~l~~~~vdgIl~DLGvSS 115 (341) +.....+|.|+..-++.. T Consensus 138 ~~~~~pyD~Iiv~~a~~~ 155 (210) T 3lbf_A 138 WQARAPFDAIIVTAAPPE 155 (210) T ss_dssp CGGGCCEEEEEESSBCSS T ss_pred CCCCCCCCEEEEEECCCH T ss_conf 755698037999641202 No 133 >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Probab=96.46 E-value=0.026 Score=34.24 Aligned_cols=86 Identities=15% Similarity=0.134 Sum_probs=61.2 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHHH Q ss_conf 98688660838888899837688288999997489--09998099899999999852148--852771132788987653 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYVP 100 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l~ 100 (341) |..+.+++ .+|..++|+=.|.|.-+.++++.+. +|+|+|.++.++..|+++++.++ +++.+++++.-+. ... T Consensus 6 L~~i~~~v--~~g~~ilDiG~g~G~~~~~l~~~~~~~~v~avDi~~~~l~~a~~n~~~~~l~~~i~~~~~D~~~~--~~~ 81 (225) T 3kr9_A 6 LELVASFV--SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA--FEE 81 (225) T ss_dssp HHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG--CCG T ss_pred HHHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCHH--HHC T ss_conf 99999558--99898999618569999999980999889971099999999999999829998779998874132--203 Q ss_pred HCCCCEEE-EECCCH Q ss_conf 12332478-622520 Q gi|255764511|r 101 DKGVDGVV-FDLGVS 114 (341) Q Consensus 101 ~~~vdgIl-~DLGvS 114 (341) ...+|.|+ +..|.. T Consensus 82 ~~~~d~iviag~g~~ 96 (225) T 3kr9_A 82 TDQVSVITIAGMGGR 96 (225) T ss_dssp GGCCCEEEEEEECHH T ss_pred CCCCCHHHCCCCCHH T ss_conf 466772105387789 No 134 >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Probab=96.43 E-value=0.021 Score=34.81 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=67.9 Q ss_pred CCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHH Q ss_conf 83340098688660838888899837688288999997489--09998099899999999852148--852771132788 Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQ 94 (341) Q Consensus 19 ~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~ 94 (341) ++.+-=|..+.+++ .+|..++|.-.|-|.-+..+++.+. +|+|+|.+|.++..|+++++.++ +++.+++++--+ T Consensus 6 m~ls~RL~~ia~~v--~~g~~vlDIG~g~G~l~i~l~~~~~~~~viavDi~~~~l~~A~~n~~~~gl~~~I~~~~~Dgl~ 83 (230) T 3lec_A 6 LQLSKRLQKVANYV--PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLS 83 (230) T ss_dssp CCCCHHHHHHHTTS--CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGG T ss_pred HHHHHHHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 05999999999658--9989999952864999999998399987999309999999999999983998757999887541 Q ss_pred HHHHHHHCCC-CEEEEECCCHH Q ss_conf 9876531233-24786225207 Q gi|255764511|r 95 LQDYVPDKGV-DGVVFDLGVSS 115 (341) Q Consensus 95 i~~~l~~~~v-dgIl~DLGvSS 115 (341) ...+...+ +.+++..|... T Consensus 84 --~~~~~e~~d~iiiag~g~~~ 103 (230) T 3lec_A 84 --AFEEADNIDTITICGMGGRL 103 (230) T ss_dssp --GCCGGGCCCEEEEEEECHHH T ss_pred --CCCCCCCCEEEEECCCCHHH T ss_conf --00455541278642875889 No 135 >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, coiled coil, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus dsm 4304} SCOP: c.66.1.3 Probab=96.43 E-value=0.019 Score=35.14 Aligned_cols=79 Identities=14% Similarity=0.075 Sum_probs=56.8 Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-CCCCEEE Q ss_conf 08388888998376882889999974--89099980998999999998521488527711327889876531-2332478 Q gi|255764511|r 32 LNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVV 108 (341) Q Consensus 32 l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~-~~vdgIl 108 (341) +.++||..++|.-.|.|.-+..+.+. .++|+|+|..|.++..+.++.+.. .+...+.........+-.. ..+|.++ T Consensus 53 l~ikpg~~VLDlG~GtG~~~~~la~~~~~g~V~avD~s~~~i~~a~~~a~~~-~n~~~i~~~~~~~~~~~~~~~~v~~i~ 131 (210) T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-NNIIPLLFDASKPWKYSGIVEKVDLIY 131 (210) T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-SSEEEECSCTTCGGGTTTTCCCEEEEE T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCEEEEEE T ss_conf 6889989999956888888999997436985999969999999999778648-970799940567411224332135887 Q ss_pred EEC Q ss_conf 622 Q gi|255764511|r 109 FDL 111 (341) Q Consensus 109 ~DL 111 (341) .|+ T Consensus 132 ~~~ 134 (210) T 1nt2_A 132 QDI 134 (210) T ss_dssp ECC T ss_pred EEC T ss_conf 202 No 136 >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, protein structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides 2} Probab=96.43 E-value=0.018 Score=35.18 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=63.4 Q ss_pred HHHHHHC-CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC Q ss_conf 6886608-388888998376882889999974890999809989999999985214885277113278898765312332 Q gi|255764511|r 27 KVIALLN-PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 (341) Q Consensus 27 Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vd 105 (341) +...+|. +.||..++|.=.|.|..+..+...+.+|+|+|..++++..|++++...+..+.+....-..+.. ....+| T Consensus 35 ~~~~~l~~~~pg~~vLdvGcG~G~~~~~l~~~g~~v~g~D~S~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~fD 112 (261) T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKE--LAGHFD 112 (261) T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGG--GTTCCS T ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEECCHHHCCC--CCCCCC T ss_conf 999997179999979998897888999999679989997778999999999746405653302122532334--578846 Q ss_pred EEEEEC Q ss_conf 478622 Q gi|255764511|r 106 GVVFDL 111 (341) Q Consensus 106 gIl~DL 111 (341) .|+... T Consensus 113 ~Vv~~~ 118 (261) T 3iv6_A 113 FVLNDR 118 (261) T ss_dssp EEEEES T ss_pred EEEECC T ss_conf 899813 No 137 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Probab=96.42 E-value=0.0076 Score=37.65 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=59.9 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECC Q ss_conf 83888889983768828899999748909998099899999999852148852771132788987653123324786225 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341) ...+++.++|.=.|.|-++..+...+.+|+|+|..+.++..|++. ..+++.+.++++.++. ....+|.|+... T Consensus 43 ~~~~~~~vLDvGcG~G~~~~~la~~g~~v~gvD~S~~~l~~a~~~---~~~~v~~~~~d~~~~~---~~~~fD~V~~~~- 115 (218) T 3ou2_A 43 AGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRH---GLDNVEFRQQDLFDWT---PDRQWDAVFFAH- 115 (218) T ss_dssp TTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGG---CCTTEEEEECCTTSCC---CSSCEEEEEEES- T ss_pred CCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHH---HCCCEEECCCHHHCCC---CCCCCEEEEEEE- T ss_conf 668899799988988789999996199899997831789999973---0551110011010125---688732899721- Q ss_pred CHHHHHH Q ss_conf 2078887 Q gi|255764511|r 113 VSSMQID 119 (341) Q Consensus 113 vSS~Qld 119 (341) +.+++. T Consensus 116 -~l~h~~ 121 (218) T 3ou2_A 116 -WLAHVP 121 (218) T ss_dssp -CGGGSC T ss_pred -EHHHCC T ss_conf -266489 No 138 >2f8l_A Hypothetical protein LMO1582; 16411011, structural genomics, PSI, protein structure initiative, joint center for structural genomics; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Probab=96.37 E-value=0.013 Score=36.13 Aligned_cols=87 Identities=17% Similarity=0.218 Sum_probs=59.5 Q ss_pred HHHHHH-HHHCCCCCCEEEECCCCCCHHHHHHHHH----C---CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH Q ss_conf 098688-6608388888998376882889999974----8---9099980998999999998521488527711327889 Q gi|255764511|r 24 LLEKVI-ALLNPAPGKVILDATFGAGGYSRSFCKM----G---SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL 95 (341) Q Consensus 24 ll~Evl-~~l~~~~~g~~iD~TlG~GGHS~~iL~~----~---~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i 95 (341) ++-+.+ .++.++++..++|.+.|.|+=..++++. . .+++|+|.|+.++..|+..+.-.+..+.++++++-. T Consensus 117 ~m~~l~~~~~~~~~~~~vlDp~cGsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~n~~~~~~~~~~~~~d~~~- 195 (344) T 2f8l_A 117 IVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLA- 195 (344) T ss_dssp HHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTS- T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCCCCHHHHHCCCCCC- T ss_conf 9999999983789998899548996689999999987536776189999899999999996400022212331001100- Q ss_pred HHHHHHCCCCEEEEECCC Q ss_conf 876531233247862252 Q gi|255764511|r 96 QDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 96 ~~~l~~~~vdgIl~DLGv 113 (341) ......+|.|+.+-=+ T Consensus 196 --~~~~~~fD~iv~NPP~ 211 (344) T 2f8l_A 196 --NLLVDPVDVVISDLPV 211 (344) T ss_dssp --CCCCCCEEEEEEECCC T ss_pred --CCCCCCCCCCCCCCCC T ss_conf --1346776721157996 No 139 >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Probab=96.35 E-value=0.0061 Score=38.25 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=56.3 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEE Q ss_conf 3888889983768828899999748-90999809989999999985214885277113278898765312332478 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVV 108 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl 108 (341) ..+++.++|.=.|.|..+..+.+.+ .+|+|+|.++.++..++++..+. .++.+.+.++.++. .+...+|.|+ T Consensus 40 l~~~~~iLDiGCG~G~~~~~L~~~g~~~v~giD~s~~~i~~~~~~~~~~-~~~~~~~~D~~~l~--~~~~sFD~Vi 112 (215) T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV-PQLRWETMDVRKLD--FPSASFDVVL 112 (215) T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC-TTCEEEECCTTSCC--SCSSCEEEEE T ss_pred CCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCC-CEEEEECCCCCCCC--CCCCCEEEEE T ss_conf 8999989996377779999999848983999827625667999983478-63543214544577--8999778999 No 140 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Probab=96.33 E-value=0.01 Score=36.73 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=60.7 Q ss_pred CCCCHHHHHHHHH---CCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH Q ss_conf 3340098688660---83888889983768828899999748--909998099899999999852148852771132788 Q gi|255764511|r 20 HVPVLLEKVIALL---NPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ 94 (341) Q Consensus 20 H~PVll~Evl~~l---~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~ 94 (341) |.-.+.+.+.+.+ .+.+++.++|.--|.|.++..+.+.. ..++|+|..+.++..|+++. .++.+..++..+ T Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~gvD~s~~~l~~a~~~~----~~~~~~~~d~~~ 141 (269) T 1p91_A 66 HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY----PQVTFCVASSHR 141 (269) T ss_dssp TTHHHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC----TTSEEEECCTTS T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCC----CCCCCEECCHHH T ss_conf 6389999999999854788899699968989699999998689968999979588999998517----754300023421 Q ss_pred HHHHHHHCCCCEEEE Q ss_conf 987653123324786 Q gi|255764511|r 95 LQDYVPDKGVDGVVF 109 (341) Q Consensus 95 i~~~l~~~~vdgIl~ 109 (341) +. +....+|.|+. T Consensus 142 lp--~~d~sfD~v~~ 154 (269) T 1p91_A 142 LP--FSDTSMDAIIR 154 (269) T ss_dssp CS--BCTTCEEEEEE T ss_pred CC--CCCCCEEEEEC T ss_conf 67--89985778742 No 141 >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Probab=96.28 E-value=0.023 Score=34.52 Aligned_cols=88 Identities=11% Similarity=0.003 Sum_probs=59.8 Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEE Q ss_conf 60838888899837688288999997489099980998999999998521488527711327889876531233247862 Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341) Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341) .+...+++.++|.=.|.|..+..+ ..+.+|+|+|.++.++..|++++...+-.+.+.+.... .......+|.|+.- T Consensus 100 ~~~~~~~~~VLDlGCG~G~l~~~~-~~~~~v~gvD~s~~~l~~ar~~~~~~~~~~~~~~~d~~---~~~~~~~~D~v~~~ 175 (253) T 3frh_A 100 IFSAETPRRVLDIACGLNPLALYE-RGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVL---CAPPAEAGDLALIF 175 (253) T ss_dssp HTSSCCCSEEEEETCTTTHHHHHH-TTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTT---TSCCCCBCSEEEEE T ss_pred HHCCCCCCEEEEECCCCCHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCHH---HCCCCCCCCHHHHH T ss_conf 845899985999678888999997-68983899979799999999999982997048855622---24577674410542 Q ss_pred CCCHHHHHHHHHHC Q ss_conf 25207888765407 Q gi|255764511|r 111 LGVSSMQIDCGDRG 124 (341) Q Consensus 111 LGvSS~Qld~~~RG 124 (341) + .-+++++++++ T Consensus 176 -~-vl~~l~~~~~~ 187 (253) T 3frh_A 176 -K-LLPLLEREQAG 187 (253) T ss_dssp -S-CHHHHHHHSTT T ss_pred -C-HHHHCCHHHHH T ss_conf -4-48648987899 No 142 >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S- adenosylmethionine-dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Probab=96.26 E-value=0.019 Score=35.04 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=59.3 Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCEEEEE Q ss_conf 888899837688288999997489--09998099899999999852148-8527711327889876531233247862 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341) .+-+++|--.|.|.++.++-+.++ +++|+|..+.++..|.++..+.+ .++.+++++..++.+.++...+|.|... T Consensus 41 ~~p~iLEIGcG~G~~~~~lA~~~P~~~~igiD~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~l~~~~~~~~~d~v~~~ 118 (214) T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214) T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE T ss_pred CCCCEEEEEEECCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCEEEEEECC T ss_conf 997189994108699999999789997797407788899999999983998644552369887421257743111124 No 143 >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Probab=96.22 E-value=0.074 Score=31.27 Aligned_cols=102 Identities=17% Similarity=0.076 Sum_probs=67.4 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC--CCEEEECCCHHHHHHHH Q ss_conf 098688660838888899837688288999997489--09998099899999999852148--85277113278898765 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK--EQFSLFQATFSQLQDYV 99 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~--~r~~~~~~~F~~i~~~l 99 (341) -|..+.+++ .+|..++|.=.|.|--+..+++.+. +|+|+|.++.++..|+++++.++ +++.+++++..+.. . T Consensus 11 RL~~ia~~v--~~g~~vlDiGcg~G~l~~~l~~~~~~~~V~avDi~~~~l~~A~~n~~~~gl~~~I~~~~~D~~~~~--~ 86 (244) T 3gnl_A 11 RLEKVASYI--TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI--E 86 (244) T ss_dssp HHHHHHTTC--CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--C T ss_pred HHHHHHHHC--CCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHHHH--C T ss_conf 999999658--999989997186489999999809998899963889999999999998299986799988750432--1 Q ss_pred HHCCCCE-EEEECCCHHHHHHHHHHCCCCCCC Q ss_conf 3123324-786225207888765407344566 Q gi|255764511|r 100 PDKGVDG-VVFDLGVSSMQIDCGDRGFSFQKS 130 (341) Q Consensus 100 ~~~~vdg-Il~DLGvSS~Qld~~~RGFSf~~d 130 (341) ....+|. +++-.|...+ .+--+.+...... T Consensus 87 ~~~~~d~~viag~g~~~i-~~il~~~~~~l~~ 117 (244) T 3gnl_A 87 KKDAIDTIVIAGMGGTLI-RTILEEGAAKLAG 117 (244) T ss_dssp GGGCCCEEEEEEECHHHH-HHHHHHTGGGGTT T ss_pred CCCCCCEEEECCCCHHHH-HHHHHHHHHHHCC T ss_conf 557876899848888999-9999998997077 No 144 >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 Probab=96.20 E-value=0.014 Score=35.91 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=12.4 Q ss_pred CCHHHHHHHHHCCCCCC----EEEECCCCCC Q ss_conf 40098688660838888----8998376882 Q gi|255764511|r 22 PVLLEKVIALLNPAPGK----VILDATFGAG 48 (341) Q Consensus 22 PVll~Evl~~l~~~~~g----~~iD~TlG~G 48 (341) -+...++++.|...+++ +|+|=-++.| T Consensus 16 ~l~~GD~l~~l~~L~~~sVdlIytDPPYn~~ 46 (323) T 1boo_A 16 SMYIGDSLELLESFPEESISLVMTSPPFALQ 46 (323) T ss_dssp EEEESCHHHHGGGSCSSCEEEEEECCCCSSS T ss_pred EEEECCHHHHHHHCCCCCCCEEEECCCCCCC T ss_conf 6996628999862704897989989998577 No 145 >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Probab=96.20 E-value=0.025 Score=34.33 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=51.1 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 340098688660838888899837688288999997489099980998999999998521 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341) -|.|.+-.-+.+...+++.++|-=.|.|=++..+.+++-+|+|+|.-+.|+..+.+.... T Consensus 53 ~p~L~~~~~~~~~~~~~~rvL~pgCG~G~da~~LA~~G~~V~gvD~S~~Ai~~a~~~~~~ 112 (252) T 2gb4_A 53 HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL 112 (252) T ss_dssp CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCC T ss_conf 989999999860889999899989878088999984898489981629999999987545 No 146 >1qyr_A KSGA, high level kasugamycin resistance protein, S-; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 Probab=96.20 E-value=0.011 Score=36.73 Aligned_cols=75 Identities=9% Similarity=0.164 Sum_probs=64.9 Q ss_pred CCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH Q ss_conf 3400986886608388888998376882889999974890999809989999999985214885277113278898 Q gi|255764511|r 21 VPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341) Q Consensus 21 ~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341) .+-.++++++.+.+.++..++..--|-|.=|.++|+.+.+|+|++.|+..+...++++... +++.++++.+-+++ T Consensus 6 d~~i~~~iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~L~~~~~~~-~~~~ii~~D~l~~~ 80 (252) T 1qyr_A 6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG-PKLTIYQQDAMTFN 80 (252) T ss_dssp CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG-GGEEEECSCGGGCC T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC-CCEEEEECHHHHHC T ss_conf 8899999998448999796999899872999999816897699996212889999876317-76256501145523 No 147 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Probab=96.19 E-value=0.0039 Score=39.53 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=43.4 Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHH Q ss_conf 6886608388888998376882889999974890999809989999999985 Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 (341) Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l 78 (341) +.+..+...+.+.++|.-.|.|..+..+++.+++|+|+|.++.++..+++++ T Consensus 8 ~~~~~l~~~~~~~VLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~a~~~~ 59 (170) T 3i9f_A 8 EYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKF 59 (170) T ss_dssp TTHHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHC T ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCEEEEEECCCCCCCEECCCC T ss_conf 9998755789697999808997999999962998999945642010001221 No 148 >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Probab=96.17 E-value=0.01 Score=36.83 Aligned_cols=80 Identities=20% Similarity=0.255 Sum_probs=52.2 Q ss_pred HHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCC Q ss_conf 88660838888899837688288999997489--0999809989999999985214885277113278898765312332 Q gi|255764511|r 28 VIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVD 105 (341) Q Consensus 28 vl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vd 105 (341) .++.|.+.+++.++|-=.|.|.-+..+++.++ +|+++|.++.|+..|+++++..+-...++.++- ...+ +..+| T Consensus 188 Ll~~l~~~~~~~VLDlGcG~G~l~~~la~~~p~~~v~~vD~s~~al~~ar~n~~~n~l~~~~~~~d~---~~~~-~~~fD 263 (343) T 2pjd_A 188 LLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV---FSEV-KGRFD 263 (343) T ss_dssp HHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TTTC-CSCEE T ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCC---HHCC-CCCCC T ss_conf 9985650589829993252779999999978997899998999999999999998499379996440---1226-65545 Q ss_pred EEEEEC Q ss_conf 478622 Q gi|255764511|r 106 GVVFDL 111 (341) Q Consensus 106 gIl~DL 111 (341) .|+.|. T Consensus 264 ~Iv~Np 269 (343) T 2pjd_A 264 MIISNP 269 (343) T ss_dssp EEEECC T ss_pred EEEECC T ss_conf 899887 No 149 >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Probab=96.13 E-value=0.019 Score=35.10 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=35.2 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHH Q ss_conf 98688660838888899837688288999997489--0999809989999999985214--885277113278 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFS 93 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~ 93 (341) ...+++.+.......++|.--|.|.++.++++.++ +++++|. |+++..++++..+. .+|+.+..++|- T Consensus 179 ~~~~~~~~~~~~~~~vlDiG~G~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~gD~~ 250 (359) T 1x19_A 179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIY 250 (359) T ss_dssp HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTT T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECC-HHHHHHHHHHHHHCCCCCCCEEEECCHH T ss_conf 99999847876787799767989799999998399228998166-8889999986675077634527834577 No 150 >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Probab=96.10 E-value=0.045 Score=32.65 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=66.1 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974-890999809989999999985214--8852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~ 100 (341) +++.+++-+.+++|..++|-=.|.||=+..+.+. +++|.|++..++-+..++++..+. .+++.+....+.+++ T Consensus 52 k~~~l~~~l~l~~G~~VLDiGCG~G~~a~~~A~~~g~~v~git~s~~q~~~a~~~~~~~~~~~~~~~~~~d~~~~~---- 127 (287) T 1kpg_A 52 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---- 127 (287) T ss_dssp HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---- T ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC---- T ss_conf 9999999719999998999688525999999996798469996899999999999876145401578874366413---- Q ss_pred HCCCCEEEE Q ss_conf 123324786 Q gi|255764511|r 101 DKGVDGVVF 109 (341) Q Consensus 101 ~~~vdgIl~ 109 (341) ..+|.|.. T Consensus 128 -~~fD~i~s 135 (287) T 1kpg_A 128 -EPVDRIVS 135 (287) T ss_dssp -CCCSEEEE T ss_pred -CCCCCEEE T ss_conf -77640555 No 151 >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, tRNA processing; HET: SAM; 1.50A {Escherichia coli K12} PDB: 3dxx_A* 3dxz_A* Probab=96.10 E-value=0.069 Score=31.44 Aligned_cols=75 Identities=15% Similarity=0.242 Sum_probs=59.1 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCH-HHHHHHHHHCCCCEEEE Q ss_conf 8888899837688288999997489--09998099899999999852148-8527711327-88987653123324786 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYK-EQFSLFQATF-SQLQDYVPDKGVDGVVF 109 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F-~~i~~~l~~~~vdgIl~ 109 (341) .++-+++|.-+|.|.++..+-..++ .++|+|.-+..+..+.++.+..+ .++.+++++. .-+..+++...+|.|.. T Consensus 33 ~~~pliLEIGcG~G~~l~~~A~~~P~~~~iGiEi~~~~v~~a~~~~~~~~l~Ni~~~~~da~~~l~~~~~~~s~d~I~i 111 (218) T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL 111 (218) T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEECCCEEEEHHHCCHHHHCCCCEECCCHHHHHHHHCCCCCCCCCEE T ss_conf 9995399972688899999999689998899997235055303212012104550564538999987524564544323 No 152 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Probab=95.98 E-value=0.045 Score=32.64 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=47.8 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 888889983768828899999748909998099899999999852148852771132788987653123324786 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) .++..++|.=.|.|..+..+.+.+.+++|+|..+.++..|++++ .....++.....-.++..+|.|++ T Consensus 40 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GiD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~~~fD~V~~ 107 (240) T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKF-------NVVKSDAIEYLKSLPDKYLDGVMI 107 (240) T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTS-------EEECSCHHHHHHTSCTTCBSEEEE T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHC-------CCCHHHHHHHHCCCCCCCCCEEEE T ss_conf 89996999738785999999977995999967707878876511-------100100666402354347658876 No 153 >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Probab=95.93 E-value=0.045 Score=32.65 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=47.4 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHH Q ss_conf 334009868866083888889983768828899999748909998099899999999852 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMR 79 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341) ..+..|.+.+..+ .+++.++|-=.|.|..+..+.+.+.+|+|+|..+.++..|++++. T Consensus 29 ~~~~~l~~~~~~l--~~~~~VLDvGCG~G~~~~~l~~~g~~v~gvD~s~~~i~~a~~~~~ 86 (211) T 3e23_A 29 PRSATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLG 86 (211) T ss_dssp CCCHHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHC--CCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHCC T ss_conf 5669999999618--998989998688869999999759923234146999999998608 No 154 >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A Probab=95.92 E-value=0.042 Score=32.87 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=6.0 Q ss_pred HHHHHHHHHCCCCCC Q ss_conf 098688660838888 Q gi|255764511|r 24 LLEKVIALLNPAPGK 38 (341) Q Consensus 24 ll~Evl~~l~~~~~g 38 (341) +...+++.|...+++ T Consensus 25 ~~GD~le~lk~L~d~ 39 (297) T 2zig_A 25 HVGDAREVLASFPEA 39 (297) T ss_dssp EESCHHHHHTTSCTT T ss_pred EECCHHHHHHHCCCC T ss_conf 947689999628677 No 155 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Probab=95.88 E-value=0.019 Score=35.10 Aligned_cols=92 Identities=10% Similarity=-0.035 Sum_probs=67.1 Q ss_pred HHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC-----CCCEEEECCCHHHHHHHH Q ss_conf 688660838888899837688288999997489--0999809989999999985214-----885277113278898765 Q gi|255764511|r 27 KVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQDYV 99 (341) Q Consensus 27 Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~-----~~r~~~~~~~F~~i~~~l 99 (341) +-+.-+.++++.+++|.=.|.|..+..+.+.++ +|+|+|.+++++..+..+.... ..++.+..++..++.... T Consensus 15 ~~l~~~~~~~~~~vLDvGcG~G~~~~~la~~~p~~~vvGvD~s~~~l~~a~~~~~~~~~~~~~~~v~~~~~d~~~lp~~~ 94 (225) T 3p2e_A 15 DELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFEL 94 (225) T ss_dssp HHHHHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGG T ss_pred HHHHHHHCCCCCEEEEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCC T ss_conf 99998648899989992276739999999868997899986788999999988887544037864333205174498430 Q ss_pred HHCCCCEEEEECCCHHHHHH Q ss_conf 31233247862252078887 Q gi|255764511|r 100 PDKGVDGVVFDLGVSSMQID 119 (341) Q Consensus 100 ~~~~vdgIl~DLGvSS~Qld 119 (341) . ...+.+-+|+-.+...+. T Consensus 95 ~-~~~~~~~~~~~~~~~~~~ 113 (225) T 3p2e_A 95 K-NIADSISILFPWGTLLEY 113 (225) T ss_dssp T-TCEEEEEEESCCHHHHHH T ss_pred C-CCCCEEEEEECHHHHHHH T ss_conf 4-775349997400355675 No 156 >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8} Probab=95.86 E-value=0.0054 Score=38.59 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=58.5 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 38888899837688288999997489099980998999999998521488527711327889876531233247862252 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341) ..+|..++|.=.|.|..+..+ ...+|+|+|..+.++..|+++. .++.+.+.+..++. ++...+|.|+.-. T Consensus 34 l~~g~~iLDiGCG~G~~~~~l--~~~~v~g~D~s~~~l~~A~~~~----~~~~~~~~~~~~l~--~~~~~fD~V~~~~-- 103 (211) T 2gs9_A 34 LPPGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRA----PEATWVRAWGEALP--FPGESFDVVLLFT-- 103 (211) T ss_dssp CCCCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHC----TTSEEECCCTTSCC--SCSSCEEEEEEES-- T ss_pred CCCCCEEEEECCCCHHHHHHC--CCCCEEEEECCHHHHHHHHHCC----CCCEEEECCHHCCC--CCCCCCCHHHHHH-- T ss_conf 799998999899860999973--7686899838999999876336----65203434231178--8756422798754-- Q ss_pred HHHHHHHHHHCC Q ss_conf 078887654073 Q gi|255764511|r 114 SSMQIDCGDRGF 125 (341) Q Consensus 114 SS~Qld~~~RGF 125 (341) +.+++.++++.+ T Consensus 104 ~l~h~~d~~~~l 115 (211) T 2gs9_A 104 TLEFVEDVERVL 115 (211) T ss_dssp CTTTCSCHHHHH T ss_pred HHHHCCCHHHHH T ss_conf 787248999999 No 157 >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Probab=95.75 E-value=0.0013 Score=42.68 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=76.1 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898765 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) +.|..++.+++.+.+.++..+++.--|.|.=|..+++.+.+|+|++.|+.....+++++..+ .++.++++.+-+++ + T Consensus 13 ~d~~i~~~Iv~~~~~~~~d~VlEIGpG~G~LT~~L~~~~~~v~aiE~D~~l~~~l~~~~~~~-~n~~ii~~D~l~~~--~ 89 (245) T 1yub_A 13 TSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN-TRVTLIHQDILQFQ--F 89 (245) T ss_dssp CCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC-SEEEECCSCCTTTT--C T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCC-CCCHHHHCCHHCCC--C T ss_conf 89899999999458999996899799735999999961650040340446689887554113-40002201100014--4 Q ss_pred HHCCCCEEEEECC--CHHHHHH Q ss_conf 3123324786225--2078887 Q gi|255764511|r 100 PDKGVDGVVFDLG--VSSMQID 119 (341) Q Consensus 100 ~~~~vdgIl~DLG--vSS~Qld 119 (341) +.....-|+.+|= +||.=+. T Consensus 90 ~~~~~~~vv~NLPY~Iss~il~ 111 (245) T 1yub_A 90 PNKQRYKIVGNIPYHLSTQIIK 111 (245) T ss_dssp CCSSEEEEEEECCSSSCHHHHH T ss_pred CCCCCEEEEECCCHHHHHHHHH T ss_conf 4578656871675787648999 No 158 >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, DNA binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A Probab=95.75 E-value=0.036 Score=33.29 Aligned_cols=46 Identities=28% Similarity=0.335 Sum_probs=21.5 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 8888899837688288999997489099980998999999998521 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341) .+|++++|...|.|--..|-.+.+-+.||+|.|++....|.+|++. T Consensus 241 ~~gdiVLDpF~GSGTT~~AA~~lgR~~IG~Ei~~~y~~ia~~Ri~~ 286 (319) T 1eg2_A 241 HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF 286 (319) T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH T ss_pred CCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 8999999879988489999998199399994899999999999997 No 159 >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A Probab=95.61 E-value=0.047 Score=32.54 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=55.3 Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH----C-CCCEEEECCC-HHHHHHHHHHCC Q ss_conf 083888889983768828899999748--9099980998999999998521----4-8852771132-788987653123 Q gi|255764511|r 32 LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD----Y-KEQFSLFQAT-FSQLQDYVPDKG 103 (341) Q Consensus 32 l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~----~-~~r~~~~~~~-F~~i~~~l~~~~ 103 (341) ..+.|..+.| .=.|.||=.+.+|+.. .++..+|.|++.+..|++-+.. + ..|+.++.+. +.-+.+ ..+.. T Consensus 117 ~h~~PkrVLI-IGgGdG~~~revlk~~~v~~v~~VEID~~Vi~~a~~~fp~~~~~~~dprv~iii~Dg~~~l~~-~~~~~ 194 (334) T 1xj5_A 117 SIPNPKKVLV-IGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKN-AAEGS 194 (334) T ss_dssp TSSCCCEEEE-ETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHT-SCTTC T ss_pred CCCCCCEEEE-ECCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHH-CCCCC T ss_conf 1999886999-889948999999974996533575058999999997534430235799879998627999751-53356 Q ss_pred CCEEEEECC Q ss_conf 324786225 Q gi|255764511|r 104 VDGVVFDLG 112 (341) Q Consensus 104 vdgIl~DLG 112 (341) +|.|+.|+- T Consensus 195 yDvIIvD~~ 203 (334) T 1xj5_A 195 YDAVIVDSS 203 (334) T ss_dssp EEEEEECCC T ss_pred CCEEEEECC T ss_conf 677999789 No 160 >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Probab=95.60 E-value=0.035 Score=33.36 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=40.0 Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHHCCCCEEEEE Q ss_conf 888899837688288999997489--0999809989999999985214--88527711327889876531233247862 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPDKGVDGVVFD 110 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~~~vdgIl~D 110 (341) .+..++|.--|.|.++.++++.++ +++++|. |.++..++++.... .+|+.+...+|-+.+ ...++|.|++- T Consensus 165 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~Dl-p~~~~~a~~~~~~~~l~~rv~~~~~d~~~~~---~~~~~D~v~~~ 239 (335) T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDW-ASVLEVAKENARIQGVASRYHTIAGSAFEVD---YGNDYDLVLLP 239 (335) T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHHTCGGGEEEEESCTTTSC---CCSCEEEEEEE T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCEEEECC-HHHHHHHHHHHHHHCCCEEEEECCCCHHHCC---CCCCHHHHHHH T ss_conf 898799979996299999998589877377446-7888999987886087435653245332055---43313588863 No 161 >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.05A {Escherichia coli K12} SCOP: c.66.1.46 Probab=95.58 E-value=0.11 Score=30.25 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=64.5 Q ss_pred HHHHHH-HHHCC-CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHHH Q ss_conf 098688-66083-8888899837688288999997489-0999809989999999985214-885277113278898765 Q gi|255764511|r 24 LLEKVI-ALLNP-APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDYV 99 (341) Q Consensus 24 ll~Evl-~~l~~-~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~i~~~l 99 (341) .+.|.| +.|.. ..+..++|.=-|.|.-+..-|.++. +|+.+|.|+.|+...++.++.. .+++.++.++--..... T Consensus 40 rvrealFn~L~~~~~~~~vLDLfaGsG~lgiEalsRGa~~v~fVE~~~~a~~~l~~N~~~~~~~~~~ii~~d~~~~l~~- 118 (202) T 2fpo_A 40 RVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ- 118 (202) T ss_dssp HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS- T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHH- T ss_conf 9999999986643289869988878558899987079988689997033356788789874635535995324565541- Q ss_pred HHCCCCEEEEECCCH Q ss_conf 312332478622520 Q gi|255764511|r 100 PDKGVDGVVFDLGVS 114 (341) Q Consensus 100 ~~~~vdgIl~DLGvS 114 (341) ....+|.|++|==|. T Consensus 119 ~~~~fDlIflDPPY~ 133 (202) T 2fpo_A 119 KGTPHNIVFVDPPFR 133 (202) T ss_dssp CCCCEEEEEECCSSS T ss_pred CCCCCCEEEECCCCC T ss_conf 277666899769987 No 162 >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 1f3l_A* Probab=95.52 E-value=0.066 Score=31.58 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=58.2 Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCCCEEE Q ss_conf 0838888899837688288999997489-099980998999999998521--4885277113278898765312332478 Q gi|255764511|r 32 LNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVV 108 (341) Q Consensus 32 l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~vdgIl 108 (341) ....++.+++|.--|.|..|....+.+. +|+|+|..+.++..+ +.... ..+++.+++++..++. +....+|.|+ T Consensus 60 ~~~~~~k~VLDlGcGtG~ls~~aA~~Ga~~V~avd~s~~~~~a~-~~~~~~~~~~~i~~i~~d~~~l~--~~~~~~D~iv 136 (340) T 2fyt_A 60 PHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM-DIIRLNKLEDTITLIKGKIEEVH--LPVEKVDVII 136 (340) T ss_dssp GGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHH-HHHHHTTCTTTEEEEESCTTTSC--CSCSCEEEEE T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHCCCCCEEEEEEEHHHCC--CCCCCCCEEE T ss_conf 21059698999327747999999975998899980989999999-99997454775168981488764--7646676899 Q ss_pred EECCCH Q ss_conf 622520 Q gi|255764511|r 109 FDLGVS 114 (341) Q Consensus 109 ~DLGvS 114 (341) .+.-.+ T Consensus 137 se~~~~ 142 (340) T 2fyt_A 137 SEWMGY 142 (340) T ss_dssp ECCCBT T ss_pred EECCCE T ss_conf 963210 No 163 >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Probab=95.51 E-value=0.08 Score=31.05 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=19.7 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCH Q ss_conf 8999999885202445338998725502 Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHSLE 254 (341) Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHSLE 254 (341) +...+|..+.+.|+|||+++|+-+-..+ T Consensus 265 ~~~~iL~~~~~~L~pgG~lli~d~~~~~ 292 (374) T 1qzz_A 265 DALTILRGCVRALEPGGRLLVLDRADVE 292 (374) T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECCH-- T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCC T ss_conf 9999999999862989889999802479 No 164 >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 Probab=95.50 E-value=0.066 Score=31.58 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=64.5 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC------CCCE Q ss_conf 116078334009868866083888889983768828899999748--90999809989999999985214------8852 Q gi|255764511|r 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY------KEQF 85 (341) Q Consensus 14 ~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~------~~r~ 85 (341) .++..+|. |+--+--.+.+.| ..++..=+|.||=+..+|+.. .++.++|.||+.+..|++.+... ..|+ T Consensus 58 ~de~~Yhe--~l~h~~l~~~~~p-k~vLiiG~G~G~~~~~ll~~~~~~~i~~VEiDp~Vi~~a~~~f~~~~~~~~~dprv 134 (314) T 1uir_A 58 RDEYIYHE--TLVHPAMLTHPEP-KRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRA 134 (314) T ss_dssp TTHHHHHH--HHHHHHHHHSSCC-CEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTE T ss_pred CCHHHHHH--HHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCEE T ss_conf 41778899--9888888609997-87999889837999999865996779874021899999875183013453568706 Q ss_pred EEECCCHHHHHHHHHHCCCCEEEEECC Q ss_conf 771132788987653123324786225 Q gi|255764511|r 86 SLFQATFSQLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 86 ~~~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341) .++.+.....-+-. ...+|.|+.|+- T Consensus 135 ~v~~~Da~~~l~~~-~~~yDvIi~D~~ 160 (314) T 1uir_A 135 VLVIDDARAYLERT-EERYDVVIIDLT 160 (314) T ss_dssp EEEESCHHHHHHHC-CCCEEEEEEECC T ss_pred EEEECHHHHHHHHC-CCCCCEEEECCC T ss_conf 99972599999748-776788998788 No 165 >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Probab=95.44 E-value=0.06 Score=31.82 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=17.7 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCHH Q ss_conf 89999998852024453389987255023 Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHSLED 255 (341) Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHSLED 255 (341) .....|..+.+.|+|||+++|+.+-.-+| T Consensus 265 ~~~~~L~~~~~aL~pgG~lli~e~~~~~~ 293 (352) T 3mcz_A 265 EAREVIGHAAGLVKPGGALLILTMTMNDD 293 (352) T ss_dssp HHHHHHHHHHHTEEEEEEEEEEEECCCTT T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCC T ss_conf 99999999998629881899998204898 No 166 >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 Probab=95.35 E-value=0.029 Score=33.92 Aligned_cols=87 Identities=16% Similarity=0.287 Sum_probs=57.2 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---------------CCEEEEECCCHHHHHHHHHHHHHCC---CCE Q ss_conf 0986886608388888998376882889999974---------------8909998099899999999852148---852 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---------------GSNVIALDRDPFAVSCGQETMRDYK---EQF 85 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---------------~~~liaiDrD~~ai~~a~~~l~~~~---~r~ 85 (341) +.+-+++.+.|.++..++|-+.|.||-..+..+. ...++|+|.|+.+...|+-.+.-.+ ... T Consensus 159 Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~~~~~~~~~~~~~~~~~~~~~~~i~G~e~~~~~~~la~~nl~l~~~~~~~~ 238 (445) T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 238 (445) T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC T ss_pred HHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCEECEECCHHHHHHHHHHCCCCCCCCCCC T ss_conf 99999976079999978127889766599999999873122777755301014234120999999996231027764320 Q ss_pred EEECCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 7711327889876531233247862252 Q gi|255764511|r 86 SLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 86 ~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341) .+.+..+.+ .-....+|.|+.+-=+ T Consensus 239 ~i~~~d~~~---~~~~~~fD~Ii~NPPf 263 (445) T 2okc_A 239 PIVCEDSLE---KEPSTLVDVILANPPF 263 (445) T ss_dssp SEEECCTTT---SCCSSCEEEEEECCCS T ss_pred EEECCCHHH---HCCCCCCCEEECCCCC T ss_conf 122153032---0243468722458997 No 167 >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Probab=95.34 E-value=0.082 Score=30.96 Aligned_cols=77 Identities=9% Similarity=0.138 Sum_probs=57.4 Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHH--------C-CCCEEEECCCHHH-HHHHHHH Q ss_conf 38888899837688288999997489--099980998999999998521--------4-8852771132788-9876531 Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRD--------Y-KEQFSLFQATFSQ-LQDYVPD 101 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~--------~-~~r~~~~~~~F~~-i~~~l~~ 101 (341) ..+.-+++|.-+|.|+++..+-..++ +++|+|.++.++..+.+++.. . -.++.+++++..+ +.+++.. T Consensus 47 ~~~~p~iLeIGcG~G~~l~~lA~~~p~~~~iGiEi~~~~v~~~~~ri~~~~~~~a~~~~l~Ni~~~~~da~~~l~~~~~~ 126 (246) T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246) T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCC T ss_conf 68998799982689989999998689875898850368999999999999874787749871999937348888875146 Q ss_pred CCCCEEEEE Q ss_conf 233247862 Q gi|255764511|r 102 KGVDGVVFD 110 (341) Q Consensus 102 ~~vdgIl~D 110 (341) ..+|.|.+. T Consensus 127 ~s~d~v~i~ 135 (246) T 2vdv_E 127 GQLSKMFFC 135 (246) T ss_dssp TCEEEEEEE T ss_pred CCCCEEEEE T ss_conf 776734898 No 168 >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Probab=95.30 E-value=0.052 Score=32.25 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=72.8 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214-88527711327889876 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQLQDY 98 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~i~~~ 98 (341) +.|-.++.+++.+.+.++..+++.--|.|.=|.++|+.+.+|+|++.|+..+...++.+... ..++.++++.+.... T Consensus 26 ~D~~i~~kIv~~~~~~~~d~VLEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~e~~~~~~~~~~~~i~~D~~~~~-- 103 (299) T 2h1r_A 26 KNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-- 103 (299) T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC-- T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHH-- T ss_conf 898999999984589998989996897279999998239907999777089999997543213333332034420000-- Q ss_pred HHHCCCCEEEEECCCH-HHHH Q ss_conf 5312332478622520-7888 Q gi|255764511|r 99 VPDKGVDGVVFDLGVS-SMQI 118 (341) Q Consensus 99 l~~~~vdgIl~DLGvS-S~Ql 118 (341) ..+..-|+.+|=|+ |.++ T Consensus 104 --~~~~~~vVgNLPY~ISs~i 122 (299) T 2h1r_A 104 --FPKFDVCTANIPYKISSPL 122 (299) T ss_dssp --CCCCSEEEEECCGGGHHHH T ss_pred --CCCCCEEECCCCHHHHHHH T ss_conf --2454346147884789999 No 169 >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* Probab=95.28 E-value=0.16 Score=29.18 Aligned_cols=56 Identities=30% Similarity=0.429 Sum_probs=45.2 Q ss_pred CCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 40098688660838888899837688288999997489099980998999999998521 Q gi|255764511|r 22 PVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 22 PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341) ..|++++++. .++..++|.=-|-|--|..+.+...+|+|+|.++.|+..|++..+. T Consensus 279 ~~L~~~v~~~---~~~~~vlDLycG~G~fsl~LA~~~~~V~gvE~~~~av~~A~~na~~ 334 (425) T 2jjq_A 279 VNLVRKVSEL---VEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEI 334 (425) T ss_dssp HHHHHHHHHH---CCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH T ss_pred HHHHHHHHCC---CCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH T ss_conf 5421222203---6877787626786688899874285545750468889999998987 No 170 >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Probab=95.15 E-value=0.013 Score=36.18 Aligned_cols=82 Identities=16% Similarity=0.245 Sum_probs=59.8 Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 00986886608388888998376882889999974---890999809989999999985214885277113278898765 Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) -+.+-+++.+.+.++..++|-+.|.|+=-.++++. ..+++|+|.|+.|+..|+ ...+++++|-..+ T Consensus 26 ~i~~~~~~~l~~~~~~~IlDPacGsG~FL~~~~~~~~~~~~i~G~did~~~~~la~--------~~~i~~~D~l~~~--- 94 (421) T 2ih2_A 26 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP--------WAEGILADFLLWE--- 94 (421) T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT--------TEEEEESCGGGCC--- T ss_pred HHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHH--------HHHHHHCCCCCCC--- T ss_conf 99999999478999699996877646999999986776786999979899999999--------7427737733368--- Q ss_pred HHCCCCEEEEECCCHH Q ss_conf 3123324786225207 Q gi|255764511|r 100 PDKGVDGVVFDLGVSS 115 (341) Q Consensus 100 ~~~~vdgIl~DLGvSS 115 (341) ...++|.|+.+=-+.. T Consensus 95 ~~~~fD~VigNPPy~~ 110 (421) T 2ih2_A 95 PGEAFDLILGNPPYGI 110 (421) T ss_dssp CSSCEEEEEECCCCCC T ss_pred CCCCCCEEEECCCCCC T ss_conf 5457777872576554 No 171 >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Probab=95.14 E-value=0.082 Score=30.98 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=60.4 Q ss_pred HHHHHHHHHCCC--CCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCH-HHHH Q ss_conf 098688660838--8888998376882889999974--890999809989999999985214--88527711327-8898 Q gi|255764511|r 24 LLEKVIALLNPA--PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATF-SQLQ 96 (341) Q Consensus 24 ll~Evl~~l~~~--~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F-~~i~ 96 (341) ++.++|...... +....+|.=.|.|.=+-.+... +.+++|+|.|++|++.|++..+.. .+++.+++... ..+. T Consensus 51 ~i~dlL~~~~~~~~~~~~~lDiGtGsg~I~~~L~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~i~~~~~~~~~~i~ 130 (254) T 2h00_A 51 WVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLM 130 (254) T ss_dssp HHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSST T ss_pred HHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH T ss_conf 99999705466667775489956787899999999779975999989999999999999983876522456523277676 Q ss_pred HHH---HHCCCCEEEEECCC Q ss_conf 765---31233247862252 Q gi|255764511|r 97 DYV---PDKGVDGVVFDLGV 113 (341) Q Consensus 97 ~~l---~~~~vdgIl~DLGv 113 (341) +.+ ....+|.|+.+-=| T Consensus 131 ~~~~~~~~~~fD~iv~NPPY 150 (254) T 2h00_A 131 DALKEESEIIYDFCMCNPPF 150 (254) T ss_dssp TTSTTCCSCCBSEEEECCCC T ss_pred HHHHHHCCCCEEEEEECCCC T ss_conf 66666436765499936855 No 172 >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Probab=95.03 E-value=0.094 Score=30.57 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=23.4 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCHHH Q ss_conf 899999988520244533899872550238 Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 (341) Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHSLEDR 256 (341) .-...|..+.+.|+|||+++|+-+-..+|. T Consensus 266 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~ 295 (360) T 1tw3_A 266 DAVRILTRCAEALEPGGRILIHERDDLHEN 295 (360) T ss_dssp HHHHHHHHHHHTEEEEEEEEEEECCBCGGG T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCCCC T ss_conf 999999999997199838999972468998 No 173 >3cc8_A Putative methyltransferase; NP_977653.1, structural genomics, joint center for structural genomics, JCSG; 1.64A {Bacillus cereus atcc 10987} Probab=95.01 E-value=0.038 Score=33.12 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=43.0 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHH Q ss_conf 0986886608388888998376882889999974890999809989999999985 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETM 78 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l 78 (341) +-.++++.+. ..+..++|.=.|.|..+..+.+.+.+++|+|.++.++..|+++. T Consensus 21 ~~~~~~~~~~-~~~~~ILDIGcG~G~~~~~l~~~~~~v~giD~s~~~i~~a~~~~ 74 (230) T 3cc8_A 21 VNPNLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL 74 (230) T ss_dssp CCHHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS T ss_pred HHHHHHHHCC-CCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHCC T ss_conf 8999997368-57996999518886999999975998999967256666654113 No 174 >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Probab=94.80 E-value=0.23 Score=28.01 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=65.6 Q ss_pred HHHHHHHC-CCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHH-HH Q ss_conf 86886608-388888998376882889999974---890999809989999999985214--885277113278898-76 Q gi|255764511|r 26 EKVIALLN-PAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQ-DY 98 (341) Q Consensus 26 ~Evl~~l~-~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~-~~ 98 (341) -+.+..|. ......++.--.+.|--|..+.+. .|+|+.+|.|++....|++.++.. .+++.++.++..++. .. T Consensus 59 g~lL~~L~~~~~~k~vLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~ag~~~~i~~~~g~a~e~l~~l 138 (237) T 3c3y_A 59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNL 138 (237) T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH T ss_conf 99999999973998899970525789999997489984899996026768999999998499813899962200001788 Q ss_pred HH----HCCCCEEEEECCCHHHHHHHHHHCC Q ss_conf 53----1233247862252078887654073 Q gi|255764511|r 99 VP----DKGVDGVVFDLGVSSMQIDCGDRGF 125 (341) Q Consensus 99 l~----~~~vdgIl~DLGvSS~Qld~~~RGF 125 (341) +. ...+|.|+.|---+.+. +.-+.-+ T Consensus 139 ~~~~~~~~~fD~IFiDadk~~y~-~y~e~~~ 168 (237) T 3c3y_A 139 LQGQESEGSYDFGFVDADKPNYI-KYHERLM 168 (237) T ss_dssp HHSTTCTTCEEEEEECSCGGGHH-HHHHHHH T ss_pred HHHCCCCCCCCEEEECCCHHHHH-HHHHHHH T ss_conf 87403577765899728888899-9999998 No 175 >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Probab=94.79 E-value=0.059 Score=31.87 Aligned_cols=47 Identities=23% Similarity=0.354 Sum_probs=41.5 Q ss_pred CCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC Q ss_conf 888889983768828899999748--90999809989999999985214 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY 81 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~ 81 (341) ..+..++|.=.|.|..+..+.+.. .+|+|+|.+++++..|+++++.+ T Consensus 45 ~~~~~vLDiGCG~G~~~i~la~~~~~~~v~GiDis~~~i~~A~~n~~~~ 93 (292) T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHY 93 (292) T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--- T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHH T ss_conf 6999599985797899999998789988999709889999999999983 No 176 >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 Probab=94.74 E-value=0.03 Score=33.75 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=46.3 Q ss_pred HHHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCE Q ss_conf 9868866083--8888899837688288999997489-09998099899999999852148852 Q gi|255764511|r 25 LEKVIALLNP--APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQF 85 (341) Q Consensus 25 l~Evl~~l~~--~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~ 85 (341) +....+.+.+ .+|..++|.-.|.|.|+..+.+.++ +|+|+|.-+.+|+.|+++....+..+ T Consensus 42 ~~~~~~~~~~~~~~g~~vLDlGCG~G~~~~~~a~~~~~~V~giD~S~~~i~~a~~~~~~~~~~~ 105 (263) T 2a14_A 42 LECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAY 105 (263) T ss_dssp HHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCC T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCC T ss_conf 9999998166888998899978886289999998479768995189999999999998657651 No 177 >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Probab=94.61 E-value=0.25 Score=27.82 Aligned_cols=81 Identities=9% Similarity=0.099 Sum_probs=58.2 Q ss_pred CCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHH-HHHHH----HCCCC Q ss_conf 8888998376882889999974---890999809989999999985214--88527711327889-87653----12332 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL-QDYVP----DKGVD 105 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i-~~~l~----~~~vd 105 (341) ....++.-..+.|-=+..+... .|+|+++|.|++....|++.++.. .+++.++.+...+. .+++. ...|| T Consensus 79 ~ak~iLEIGT~~GySal~~a~al~~~g~l~tie~~~~~~~~Ar~~~~~ag~~~kI~~~~g~A~e~L~~l~~~~~~~~~fD 158 (247) T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 158 (247) T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCC T ss_conf 99779996321589999999858546369998517787899999998620145058994428999999985313477644 Q ss_pred EEEEECCCHHH Q ss_conf 47862252078 Q gi|255764511|r 106 GVVFDLGVSSM 116 (341) Q Consensus 106 gIl~DLGvSS~ 116 (341) .|+.|---..+ T Consensus 159 fIFIDadK~~Y 169 (247) T 1sui_A 159 FIFVDADKDNY 169 (247) T ss_dssp EEEECSCSTTH T ss_pred EEEECCCHHHH T ss_conf 79963888888 No 178 >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA processing, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Probab=94.49 E-value=0.13 Score=29.58 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=56.0 Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC-------CCCEEEECCCH-HHHHHHHHHCCCC Q ss_conf 888899837688288999997489--0999809989999999985214-------88527711327-8898765312332 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY-------KEQFSLFQATF-SQLQDYVPDKGVD 105 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~-------~~r~~~~~~~F-~~i~~~l~~~~vd 105 (341) ++-.++|.-+|.|.++..+-..++ +++|+|..+..+..+..+.+.. -+++.+++++. ..+.+++....|| T Consensus 46 ~~~~iLeIGcG~G~~l~~lA~~~P~~~~iGiei~~~~~~~~~~~~~~~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~s~d 125 (235) T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235) T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCH T ss_conf 89879998226869999999868687289886135899999989999999987088569998544487766651355400 Q ss_pred EEEEE Q ss_conf 47862 Q gi|255764511|r 106 GVVFD 110 (341) Q Consensus 106 gIl~D 110 (341) .|.+. T Consensus 126 ~v~i~ 130 (235) T 3ckk_A 126 KMFFL 130 (235) T ss_dssp EEEEE T ss_pred HCEEE T ss_conf 10576 No 179 >3bwc_A Spermidine synthase; SAM, SGPP, structural genomics, PSI, protein structure initiative; HET: MSE SAM; 2.30A {Trypanosoma cruzi strain cl brener} PDB: 3bwb_A* Probab=94.47 E-value=0.19 Score=28.59 Aligned_cols=94 Identities=18% Similarity=0.237 Sum_probs=58.3 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC-----CCCEEE Q ss_conf 16078334009868866083888889983768828899999748--90999809989999999985214-----885277 Q gi|255764511|r 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY-----KEQFSL 87 (341) Q Consensus 15 ~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~-----~~r~~~ 87 (341) ++..+|. |+--+.-...+.|..+.| .=.|.||=..++|+.. .++..+|.||+.+..+++-+... ..|+.+ T Consensus 77 De~~YhE--~l~h~~l~~h~~pk~VLI-iGgGdG~~~rellk~~~v~~v~~VEID~~Vi~~~~~~~p~~~~~~~dprv~i 153 (304) T 3bwc_A 77 DEFVYHE--VLGHTSLCSHPKPERVLI-IGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATV 153 (304) T ss_dssp THHHHHH--HHHHHHHTTSSSCCEEEE-EECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEE T ss_pred CHHHHHH--HHHHHHHHCCCCCCEEEE-ECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEE T ss_conf 5888999--988888743999786999-8389379999999659942799980588999999986544301114986489 Q ss_pred ECCCHHH-HHHHHHHCCCCEEEEECC Q ss_conf 1132788-987653123324786225 Q gi|255764511|r 88 FQATFSQ-LQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 88 ~~~~F~~-i~~~l~~~~vdgIl~DLG 112 (341) +.+.-.. +.+ ..+..+|.|+.|+- T Consensus 154 ii~D~~~~l~~-~~~~~yDvIi~D~~ 178 (304) T 3bwc_A 154 RVGDGLAFVRQ-TPDNTYDVVIIDTT 178 (304) T ss_dssp EESCHHHHHHS-SCTTCEEEEEEECC T ss_pred EECHHHHHHHH-CCCCCCCEEEEECC T ss_conf 98669999974-63468768999089 No 180 >2pt6_A Spermidine synthase; transferase, structural genomics consortium, SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum 3D7} PDB: 2pss_A* 2pt9_A* Probab=94.45 E-value=0.2 Score=28.50 Aligned_cols=93 Identities=18% Similarity=0.310 Sum_probs=60.6 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC-----CCCEEE Q ss_conf 16078334009868866083888889983768828899999748--90999809989999999985214-----885277 Q gi|255764511|r 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY-----KEQFSL 87 (341) Q Consensus 15 ~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~-----~~r~~~ 87 (341) ++..+|. |+--+.-.+.+.|. .++-.=.|.||=.+.+|+.. .++...|.|++.++.|++.+... ..|+.+ T Consensus 98 de~~YhE--~l~h~pl~~~~~pk-~VLIiGgGdG~~~rellk~~~~~~v~~VEID~~Vv~~ak~~f~~~~~~~~dprv~v 174 (321) T 2pt6_A 98 DEFAYHE--MMTHVPMTVSKEPK-NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNV 174 (321) T ss_dssp THHHHHH--HHHHHHHHHSSSCC-EEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEE T ss_pred CHHHHHH--HHHHHHHHCCCCCC-EEEEECCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 5768889--98716865199957-69998489539999999729964147852579999999986266234436876269 Q ss_pred ECCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 113278898765312332478622 Q gi|255764511|r 88 FQATFSQLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 88 ~~~~F~~i~~~l~~~~vdgIl~DL 111 (341) +.+.-.+.-+-. ...+|.|+.|+ T Consensus 175 ~~~Da~~~l~~~-~~~yDvIi~D~ 197 (321) T 2pt6_A 175 FIEDASKFLENV-TNTYDVIIVDS 197 (321) T ss_dssp EESCHHHHHHHC-CSCEEEEEEEC T ss_pred EECHHHHHHHHC-CCCCCEEEEEC T ss_conf 961699998736-67667799937 No 181 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Probab=94.37 E-value=0.064 Score=31.65 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=43.6 Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHH Q ss_conf 0098688660838888899837688288999997489--0999809989999999985214--885277113278 Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFS 93 (341) Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~ 93 (341) ....++++.+.....+.++|.--|.|..+.+++++++ +++++|. |+.+..++++..+. .+|+.+...+|- T Consensus 156 ~~~~~~~~~~~~~~~~~vlDvGgG~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~ 229 (332) T 3i53_A 156 LDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332) T ss_dssp HHHTTGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEC-HHHHHHHHHHHHHCCCCCCEEEECCCCC T ss_conf 7899999737864674787528997699999999789986999978-4389999987564167874577337512 No 182 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} Probab=94.36 E-value=0.11 Score=30.18 Aligned_cols=79 Identities=20% Similarity=0.347 Sum_probs=50.3 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHH Q ss_conf 98688660838888899837688288999997489--0999809989999999985214--8852771132788987653 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVP 100 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~ 100 (341) ..++.+.+.. .+..++|.--|.|.++.+++++++ +++++|. |+++..+++++... .+|+.+..++|-+ . .+ T Consensus 157 ~~~~~~~~d~-~~~~vlDvG~G~G~~~~~l~~~~P~l~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~gd~~~--~-~p 231 (334) T 2ip2_A 157 FHEIPRLLDF-RGRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ--E-VP 231 (334) T ss_dssp HHHHHHHSCC-TTCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT--C-CC T ss_pred HHHHHHHHCC-CCCEEEECCCCCCHHHHHHHHHCCCEEEEEECC-CCHHHHHHHHHHHCCCCCEEEEECCCHHH--C-CC T ss_conf 9998886077-888673038987688888898699649998228-51128998767650777706997177654--3-88 Q ss_pred HCCCCEEEE Q ss_conf 123324786 Q gi|255764511|r 101 DKGVDGVVF 109 (341) Q Consensus 101 ~~~vdgIl~ 109 (341) .++|.|++ T Consensus 232 -~~~D~v~~ 239 (334) T 2ip2_A 232 -SNGDIYLL 239 (334) T ss_dssp -SSCSEEEE T ss_pred -CCCCEEEE T ss_conf -75708999 No 183 >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 Probab=94.34 E-value=0.3 Score=27.33 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=54.5 Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC-----CCCEEEECCCHHHHHHHHHHCCC Q ss_conf 083888889983768828899999748--90999809989999999985214-----88527711327889876531233 Q gi|255764511|r 32 LNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQDYVPDKGV 104 (341) Q Consensus 32 l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~-----~~r~~~~~~~F~~i~~~l~~~~v 104 (341) ..+.|. .++=.-.|.||=.+.+|+.. .++..+|.|++.+..|++-+... ..|+.++.+.-...-+- ....+ T Consensus 105 ~~~~pk-~VLIiGgGdG~~~rellk~~~v~~v~~VEID~~Vi~~a~~~~~~~~~~~~dprv~i~~~Da~~~l~~-~~~~y 182 (314) T 2b2c_A 105 AHPDPK-RVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HKNEF 182 (314) T ss_dssp HSSSCC-EEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CTTCE T ss_pred CCCCCC-EEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCHHHCCCCCCCCEEEEECHHHHHHHC-CCCCC T ss_conf 399978-7999889846999999974995458999608899999976363322545666527997108999741-78888 Q ss_pred CEEEEEC Q ss_conf 2478622 Q gi|255764511|r 105 DGVVFDL 111 (341) Q Consensus 105 dgIl~DL 111 (341) |.|+.|+ T Consensus 183 DvII~D~ 189 (314) T 2b2c_A 183 DVIITDS 189 (314) T ss_dssp EEEEECC T ss_pred CEEEEEC T ss_conf 8899968 No 184 >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, antibiotic resistance, methyltransferase; 1.44A {Aquifex aeolicus VF5} PDB: 3ftc_A 3fte_A 3ftf_A* Probab=94.30 E-value=0.15 Score=29.29 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=68.7 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH Q ss_conf 3340098688660838888899837688288999997489-099980998999999998521488527711327889876 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~ 98 (341) +.|..++.+++.+++.++..+|+.--|.|-=|+++|+.++ +|+|++.|+..+...+ ..+.+++.++++.+-.++-. T Consensus 15 ~d~~~~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~~v~aiE~D~~l~~~l~---~~~~~~~~ii~~D~l~~~~~ 91 (249) T 3ftd_A 15 VSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLK---SIGDERLEVINEDASKFPFC 91 (249) T ss_dssp ECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHT---TSCCTTEEEECSCTTTCCGG T ss_pred CCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCHHHHH---HHCCCCEEEEECCHHHCCHH T ss_conf 898999999995489998949996998769899999704570789998662001322---22044328996340117864 Q ss_pred HHHCCCCEEEEECCCH Q ss_conf 5312332478622520 Q gi|255764511|r 99 VPDKGVDGVVFDLGVS 114 (341) Q Consensus 99 l~~~~vdgIl~DLGvS 114 (341) .. ..-.-|+.+|-|+ T Consensus 92 ~~-~~~~~vVgNLPY~ 106 (249) T 3ftd_A 92 SL-GKELKVVGNLPYN 106 (249) T ss_dssp GS-CSSEEEEEECCTT T ss_pred HC-CCCCEEEECCCHH T ss_conf 62-9762586144210 No 185 >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Probab=94.22 E-value=0.32 Score=27.17 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEC Q ss_conf 8999999885202445338998725 Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFH 251 (341) Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFH 251 (341) .-...|..+...|+|||++.|+-+- T Consensus 285 ~~~~iL~~~~~aL~pgG~lli~e~~ 309 (369) T 3gwz_A 285 DVVRILRRIATAMKPDSRLLVIDNL 309 (369) T ss_dssp HHHHHHHHHHTTCCTTCEEEEEEEB T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 9999999999965999789999834 No 186 >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} Probab=94.22 E-value=0.32 Score=27.17 Aligned_cols=76 Identities=13% Similarity=0.059 Sum_probs=57.5 Q ss_pred CCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHH-CCCCEEEECCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 8888998376882889999974--89099980998999999998521-4885277113278898765312332478622 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRD-YKEQFSLFQATFSQLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~-~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DL 111 (341) ....+++.=.|+|.-++.++.. +.++.++|.||+.+..+++.+.- -..|+.++.+.-.+.-.-.....+|.|+.|+ T Consensus 89 ~p~rvL~lG~G~g~l~r~l~~~~P~~~v~~VEidp~vi~~ar~~f~~~~~~rv~v~~~Da~~~l~~~~~~~~D~Iv~D~ 167 (317) T 3gjy_A 89 SKLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDV 167 (317) T ss_dssp GGCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEEC T ss_conf 8877999899689999999997899869999798899999998679988997689978499999750557887799957 No 187 >2i7c_A Spermidine synthase; transferase, structural genomics consortium, SGC; HET: AAT 1PG; 1.71A {Plasmodium falciparum 3D7} PDB: 2hte_A* 3b7p_A* 2pwp_A* Probab=94.16 E-value=0.24 Score=27.98 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=60.4 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC-----CCCEEEECCCHHHHH Q ss_conf 09868866083888889983768828899999748--90999809989999999985214-----885277113278898 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQ 96 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~-----~~r~~~~~~~F~~i~ 96 (341) |+--+.-.+.+.|. .++=.=+|.||=.+.+|+.. .++...|.||+.+..|++.+... ..|+.++...-...- T Consensus 67 ~l~h~~~~~~~~pk-~vLiiGgG~G~~~~ellk~~~~~~i~~VEiD~~Vi~~a~~~f~~~~~~~~d~rv~v~~~Da~~~l 145 (283) T 2i7c_A 67 MMTHVPMTVSKEPK-NVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFL 145 (283) T ss_dssp HHHHHHHTTSSSCC-EEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHH T ss_pred HHHHHHHHCCCCCC-EEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHH T ss_conf 99878865299824-49998388349999999749963799974789999999987465024224876528960689999 Q ss_pred HHHHHCCCCEEEEEC Q ss_conf 765312332478622 Q gi|255764511|r 97 DYVPDKGVDGVVFDL 111 (341) Q Consensus 97 ~~l~~~~vdgIl~DL 111 (341) +-. ...+|.|+.|+ T Consensus 146 ~~~-~~~yDvIi~D~ 159 (283) T 2i7c_A 146 ENV-TNTYDVIIVDS 159 (283) T ss_dssp HHC-CSCEEEEEEEC T ss_pred HHC-CCCCCEEEEEC T ss_conf 746-88777799947 No 188 >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Probab=94.01 E-value=0.35 Score=26.91 Aligned_cols=94 Identities=16% Similarity=0.120 Sum_probs=66.3 Q ss_pred CCHHHHHH-HHHCC-CCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCHHHH Q ss_conf 40098688-66083-8888899837688288999997489-09998099899999999852148---8527711327889 Q gi|255764511|r 22 PVLLEKVI-ALLNP-APGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQL 95 (341) Q Consensus 22 PVll~Evl-~~l~~-~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~---~r~~~~~~~F~~i 95 (341) |-.++|.| +.|.. ..+..++|.=-|.|.-+.+-|.+|. +++.+|.|+.|+...++.++..+ ..+.+........ T Consensus 37 ~~~vrealFn~l~~~~~~~~~LDLFaGSG~lglEAlSRGA~~v~fVE~~~~a~~~l~~N~~~l~~~~~~~~~~~~d~~~~ 116 (201) T 2ift_A 37 GDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDF 116 (201) T ss_dssp -CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHH T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCHHEEEEHHHHHH T ss_conf 48999999998776429987998788828989999988993999997405577899999998386632002320345655 Q ss_pred HHHHH-HCCCCEEEEECCCHH Q ss_conf 87653-123324786225207 Q gi|255764511|r 96 QDYVP-DKGVDGVVFDLGVSS 115 (341) Q Consensus 96 ~~~l~-~~~vdgIl~DLGvSS 115 (341) ..... ...+|-|++|==|.. T Consensus 117 l~~~~~~~~fDlIFlDPPY~~ 137 (201) T 2ift_A 117 LKQPQNQPHFDVVFLDPPFHF 137 (201) T ss_dssp TTSCCSSCCEEEEEECCCSSS T ss_pred HHHCCCCCCCCEEEECCCCCC T ss_conf 430024676655885797555 No 189 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Probab=93.94 E-value=0.12 Score=29.87 Aligned_cols=76 Identities=17% Similarity=0.294 Sum_probs=57.6 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 838888899837688288999997489-099980998999999998521--48852771132788987653123324786 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) ...++.+++|.--|.|..|....+.+. +|+|+|..+ +...+++.... +.+++++++++..++. ++...+|-|+. T Consensus 54 ~~~~~~~VLDiG~G~G~ls~~aa~~Ga~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~~~~~~~~l~--~~~~~~Dvivs 130 (340) T 1or8_A 54 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVE--LPVEKVDIIIS 130 (340) T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--CSSSCEEEEEE T ss_pred HCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHH-HHHHHHHHHHHCCCCCEEEEEEEEEEECC--CCCCCCCEEEE T ss_conf 1059497999837887999999980898899964619-99999999997287832799973134303--78653107997 Q ss_pred EC Q ss_conf 22 Q gi|255764511|r 110 DL 111 (341) Q Consensus 110 DL 111 (341) ++ T Consensus 131 E~ 132 (340) T 1or8_A 131 EW 132 (340) T ss_dssp CC T ss_pred EE T ss_conf 50 No 190 >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Probab=93.93 E-value=0.36 Score=26.81 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=67.7 Q ss_pred CCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH-HHHHHHH---CCCC Q ss_conf 88888998376882889999974---890999809989999999985214--8852771132788-9876531---2332 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ-LQDYVPD---KGVD 105 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~-i~~~l~~---~~vd 105 (341) .....++..-.|.|-=+..+... +++|+.+|.|++....|++.++.. .+++.++.++..+ +.+++.. ..+| T Consensus 68 ~~~k~vLEiGt~~GySal~lA~al~~~g~v~tie~~~~~~~~Ar~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~fD 147 (229) T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229) T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE T ss_pred HCCCEEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHCCCCCCE T ss_conf 49978999844468999999943799978999957465999999999976998856999950045677776413577721 Q ss_pred EEEEECCCHHHHHHHHHHCCCCCCCC Q ss_conf 47862252078887654073445664 Q gi|255764511|r 106 GVVFDLGVSSMQIDCGDRGFSFQKSG 131 (341) Q Consensus 106 gIl~DLGvSS~Qld~~~RGFSf~~dg 131 (341) .|+.|-.-+.+. +.-+......+.| T Consensus 148 ~iFiDa~k~~y~-~~~~~~~~lL~~g 172 (229) T 2avd_A 148 VAVVDADKENCS-AYYERCLQLLRPG 172 (229) T ss_dssp EEEECSCSTTHH-HHHHHHHHHEEEE T ss_pred EEEECCCHHHHH-HHHHHHHHHCCCC T ss_conf 899438877779-9999999655898 No 191 >1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Probab=93.79 E-value=0.057 Score=31.99 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=51.6 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898765 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) |......++...-...|++.++|.=.|.|..+..+ .+++|+|..+.++..|+++ .+.+++++..++. . T Consensus 31 ~~~~~~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l----~~~~giD~s~~~i~~a~~~------~i~~~~~d~~~l~--~ 98 (219) T 1vlm_A 31 HRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR------GVFVLKGTAENLP--L 98 (219) T ss_dssp THHHHHHHHHHHHHHCCSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT------TCEEEECBTTBCC--S T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH----HHEEEEECCHHHHHHHHHC------CCEEEECCHHHCC--C T ss_conf 58999999999972389990999858677999977----5869994999999999986------9989987778789--9 Q ss_pred HHCCCCEEEEE Q ss_conf 31233247862 Q gi|255764511|r 100 PDKGVDGVVFD 110 (341) Q Consensus 100 ~~~~vdgIl~D 110 (341) +...+|.|+.- T Consensus 99 ~~~sfD~V~~~ 109 (219) T 1vlm_A 99 KDESFDFALMV 109 (219) T ss_dssp CTTCEEEEEEE T ss_pred CCCCCCEECCC T ss_conf 87873320313 No 192 >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* Probab=93.77 E-value=0.38 Score=26.63 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=54.2 Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHH-----------CCCCEEEECCCHHHHHHH Q ss_conf 6083888889983768828899999748-9099980998999999998521-----------488527711327889876 Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRD-----------YKEQFSLFQATFSQLQDY 98 (341) Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~-----------~~~r~~~~~~~F~~i~~~ 98 (341) ...+.|. .++-.=+|.||=...+|+.. .++.++|.||+.+..|++.+.. ..+|+.++...-...-+ T Consensus 71 ~~~~~p~-~VLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~vi~~a~~~~~~~~~~~e~~~~~~d~rv~v~~~Da~~~l~- 148 (281) T 1mjf_A 71 LAHPKPK-RVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK- 148 (281) T ss_dssp HHSSCCC-EEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH- T ss_pred HCCCCCC-EEEEEECCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECHHHHHHH- T ss_conf 5099988-79999289439999998438835899706889999999851114213445303579966999621899973- Q ss_pred HHHCCCCEEEEEC Q ss_conf 5312332478622 Q gi|255764511|r 99 VPDKGVDGVVFDL 111 (341) Q Consensus 99 l~~~~vdgIl~DL 111 (341) ...++|.|+.|+ T Consensus 149 -~~~~yDvIi~D~ 160 (281) T 1mjf_A 149 -NNRGFDVIIADS 160 (281) T ss_dssp -HCCCEEEEEEEC T ss_pred -CCCCCCEEEEEC T ss_conf -078878899918 No 193 >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca YX} Probab=93.71 E-value=0.15 Score=29.29 Aligned_cols=76 Identities=17% Similarity=0.280 Sum_probs=55.6 Q ss_pred HHHHHHHHCCCCC-CEEEECCCCCC--HHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH Q ss_conf 9868866083888-88998376882--889999974---89099980998999999998521488527711327889876 Q gi|255764511|r 25 LEKVIALLNPAPG-KVILDATFGAG--GYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY 98 (341) Q Consensus 25 l~Evl~~l~~~~~-g~~iD~TlG~G--GHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~ 98 (341) +...+.+|....| ..|||.=.|.| |++..++.. ..+|+++|.||.++..++.++... .+..+++..+.+...+ T Consensus 65 l~Ravr~la~~~GirqfLDlGcG~gt~~~~he~a~~~~P~arVv~vD~dp~~la~ara~l~~~-~~~~~v~aD~~~p~~i 143 (274) T 2qe6_A 65 LVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD-PNTAVFTADVRDPEYI 143 (274) T ss_dssp HHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC-TTEEEEECCTTCHHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCC-CCEEEEECCCCCHHHH T ss_conf 999999998745977899947388986419999998789977999959788999987650479-9768997430273434 Q ss_pred HHH Q ss_conf 531 Q gi|255764511|r 99 VPD 101 (341) Q Consensus 99 l~~ 101 (341) +.. T Consensus 144 l~~ 146 (274) T 2qe6_A 144 LNH 146 (274) T ss_dssp HHS T ss_pred HCC T ss_conf 225 No 194 >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} Probab=93.58 E-value=0.39 Score=26.60 Aligned_cols=32 Identities=13% Similarity=0.111 Sum_probs=23.7 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHH Q ss_conf 78999999885202445338998725502389 Q gi|255764511|r 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRL 257 (341) Q Consensus 226 ~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRi 257 (341) +....+|..+.+.|+|||+++|+.+-.-+++. T Consensus 264 ~~~~~iL~~i~~~L~pgG~lli~d~~~~~~~~ 295 (363) T 3dp7_A 264 EEVISILTRVAQSIGKDSKVYIMETLWDRQRY 295 (363) T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEECCTTSCSS T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC T ss_conf 44545799999668888289999831589887 No 195 >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* Probab=93.55 E-value=0.29 Score=27.40 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=61.0 Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH----C-CCCEEE Q ss_conf 16078334009868866083888889983768828899999748--9099980998999999998521----4-885277 Q gi|255764511|r 15 HTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD----Y-KEQFSL 87 (341) Q Consensus 15 ~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~----~-~~r~~~ 87 (341) ++..+|. |+--+--...+.|. .++=.=.|.||=...+|+.. .++..+|.|++.+..|++-+.. + ..|+.+ T Consensus 77 de~~YhE--~l~h~pl~~~~~pk-~VLIiGgG~G~~~~ellk~~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dpRv~i 153 (304) T 2o07_A 77 DEFSYQE--MIANLPLCSHPNPR-KVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTL 153 (304) T ss_dssp THHHHHH--HHHHHHHTTSSSCC-EEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEE T ss_pred CHHHHHH--HHHHHHHHCCCCCC-EEEEECCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 4888889--88879986199978-69998799459999998659853268760469999999985555334435772489 Q ss_pred ECCCHHHHHHHHHHCCCCEEEEECC Q ss_conf 1132788987653123324786225 Q gi|255764511|r 88 FQATFSQLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 88 ~~~~F~~i~~~l~~~~vdgIl~DLG 112 (341) +.....+.-+- ....+|.|+.|+- T Consensus 154 ~~~Da~~~l~~-~~~~yDvIi~D~~ 177 (304) T 2o07_A 154 HVGDGFEFMKQ-NQDAFDVIITDSS 177 (304) T ss_dssp EESCHHHHHHT-CSSCEEEEEEECC T ss_pred EEHHHHHHHHH-CCCCCCEEEECCC T ss_conf 96079999974-7777888999089 No 196 >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Probab=93.41 E-value=0.1 Score=30.37 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=60.9 Q ss_pred HHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCHHHHHHH-H Q ss_conf 098688660838888-899837688288999997489-0999809989999999985214885277-11327889876-5 Q gi|255764511|r 24 LLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSL-FQATFSQLQDY-V 99 (341) Q Consensus 24 ll~Evl~~l~~~~~g-~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~-~~~~F~~i~~~-l 99 (341) =|.+.++.+.+...| +.+|.--..||.|..+|+.+. +|||+|.--.-+. ..+.. ..|+.. -..|+.++... + T Consensus 24 KL~~al~~f~i~~~gk~~lDiGaStGGFTd~lLq~GA~~V~aVDVG~~qL~---~~lr~-d~rV~~~E~~n~R~~~~~~~ 99 (232) T 3opn_A 24 KLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLA---WKIRS-DERVVVMEQFNFRNAVLADF 99 (232) T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCC---HHHHT-CTTEEEECSCCGGGCCGGGC T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCHHHH---HHHHC-CCCCCCHHHHCCCCCCHHHC T ss_conf 999999977998689989985889858999999809878999943703430---77743-98703202101445533330 Q ss_pred HHCCCCEEEEECCCHHH Q ss_conf 31233247862252078 Q gi|255764511|r 100 PDKGVDGVVFDLGVSSM 116 (341) Q Consensus 100 ~~~~vdgIl~DLGvSS~ 116 (341) ....+|.|..|+-.-|. T Consensus 100 ~~~~~Dlvv~DvSFISl 116 (232) T 3opn_A 100 EQGRPSFTSIDVSFISL 116 (232) T ss_dssp CSCCCSEEEECCSSSCG T ss_pred CCCCCCEEEECCCHHHH T ss_conf 46888789970651769 No 197 >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Probab=93.36 E-value=0.38 Score=26.65 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=60.7 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH----C-CCCEE Q ss_conf 116078334009868866083888889983768828899999748--9099980998999999998521----4-88527 Q gi|255764511|r 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD----Y-KEQFS 86 (341) Q Consensus 14 ~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~----~-~~r~~ 86 (341) .++..+|. |+--+--...+.|.. ++=.=.|.||=...+|+.. .++..+|.||+.+..|++-+.. + ..|+. T Consensus 56 ~de~~Yhe--~l~h~~l~~~~~pk~-VLiiGgG~G~~~~~~l~~~~~~~v~~VEiD~~Vi~~a~~~~~~~~~~~~dprv~ 132 (275) T 1iy9_A 56 KDEFVYHE--MVAHVPLFTHPNPEH-VLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVD 132 (275) T ss_dssp TTHHHHHH--HHHHHHHHHSSSCCE-EEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEE T ss_pred CCCCHHHH--HHHHHHHHCCCCCCE-EEEEECCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCHHHCCCCCCCCCE T ss_conf 78006679--987788750999675-999907963999999965996469999708899999998572313532387743 Q ss_pred EECCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 7113278898765312332478622 Q gi|255764511|r 87 LFQATFSQLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 87 ~~~~~F~~i~~~l~~~~vdgIl~DL 111 (341) ++...-...-.- ....+|.|+.|+ T Consensus 133 i~~~Da~~~l~~-~~~~yDvIi~D~ 156 (275) T 1iy9_A 133 VQVDDGFMHIAK-SENQYDVIMVDS 156 (275) T ss_dssp EEESCSHHHHHT-CCSCEEEEEESC T ss_pred EEECHHHHHHHC-CCCCCCEEEEEC T ss_conf 898858998750-567767899938 No 198 >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer, dimer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Probab=93.25 E-value=0.19 Score=28.54 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=57.9 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 838888899837688288999997489-099980998999999998521--48852771132788987653123324786 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) ...++.+++|.--|.|..|....+.+. +|+|+|.++. +..|++..+. ..+++.+++++..++. +....+|.|+. T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~aa~~Ga~~V~a~d~s~~-~~~a~~~~~~~~~~~~i~~i~~~~~~~~--~~~~~~D~vvs 111 (328) T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSI-IEMAKELVELNGFSDKITLLRGKLEDVH--LPFPKVDIIIS 111 (328) T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTH-HHHHHHHHHHTTCTTTEEEEESCTTTSC--CSSSCEEEEEE T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECHHH-HHHHHHHHHHCCCCCEEEEEEEEEECCC--CCCCCCCEEEE T ss_conf 00697999997899779999999719998999959799-9999999987387623899971210055--77666429999 Q ss_pred ECCC Q ss_conf 2252 Q gi|255764511|r 110 DLGV 113 (341) Q Consensus 110 DLGv 113 (341) ++-. T Consensus 112 e~~~ 115 (328) T 1g6q_1 112 EWMG 115 (328) T ss_dssp CCCB T ss_pred EECC T ss_conf 7332 No 199 >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Probab=93.01 E-value=0.51 Score=25.85 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=63.1 Q ss_pred HHHHHCCCCC-CEEEECCCCCCHHHHHHHHH----C----CEEEEECCCHHHHHHHHHHHHHCC----CCEEEECCCHHH Q ss_conf 8866083888-88998376882889999974----8----909998099899999999852148----852771132788 Q gi|255764511|r 28 VIALLNPAPG-KVILDATFGAGGYSRSFCKM----G----SNVIALDRDPFAVSCGQETMRDYK----EQFSLFQATFSQ 94 (341) Q Consensus 28 vl~~l~~~~~-g~~iD~TlG~GGHS~~iL~~----~----~~liaiDrD~~ai~~a~~~l~~~~----~r~~~~~~~F~~ 94 (341) +++.+...+. ..++|.=.|.|..+..||+. . .+++|+|..+.++..++++++..+ -++.+....+.. T Consensus 43 ~l~~~~~~~~~~~VLdiGcG~G~~~~~il~~l~~~~~~~~~~~~~vD~s~~~l~~ak~~~~~~~~~~~~~~~~~~~~~~~ 122 (292) T 2aot_A 43 IIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSE 122 (292) T ss_dssp HSSSTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHH T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH T ss_conf 99985167999869998797997789999988874478777599998988999999999887413355301102351654 Q ss_pred HHHH----HHHCCCCEEEEECCCHHHHHHHHHHCC Q ss_conf 9876----531233247862252078887654073 Q gi|255764511|r 95 LQDY----VPDKGVDGVVFDLGVSSMQIDCGDRGF 125 (341) Q Consensus 95 i~~~----l~~~~vdgIl~DLGvSS~Qld~~~RGF 125 (341) .... .....+|.|++= -+-++++++..-+ T Consensus 123 ~~~~~~~~~~~~~fD~I~~~--~~l~~~~d~~~~l 155 (292) T 2aot_A 123 YQSRMLEKKELQKWDFIHMI--QMLYYVKDIPATL 155 (292) T ss_dssp HHHHHHTTTCCCCEEEEEEE--SCGGGCSCHHHHH T ss_pred CCCHHHCCCCCCCEEEEEEC--CHHHHHHHHHHHH T ss_conf 04422155678986799976--8044310399999 No 200 >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Probab=92.99 E-value=0.47 Score=26.04 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=56.4 Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHC-----CCCEEEECCCHHHHHHHHHHCC Q ss_conf 6083888889983768828899999748--90999809989999999985214-----8852771132788987653123 Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDY-----KEQFSLFQATFSQLQDYVPDKG 103 (341) Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~-----~~r~~~~~~~F~~i~~~l~~~~ 103 (341) .+.+.|..+.| .=+|.||=...+|+.. .++..+|.||+.+..|++-+... ..|+.++.+.....-.-. ... T Consensus 86 ~~~~~pk~VLi-iGgG~G~~~~e~l~~~~~~~v~~VEID~~Vi~~a~~~~~~~~~~~~d~rv~ii~~Da~~~l~~~-~~~ 163 (296) T 1inl_A 86 FLHPNPKKVLI-IGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF-KNE 163 (296) T ss_dssp HHSSSCCEEEE-EECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC-SSC T ss_pred HHCCCCCEEEE-ECCCCHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHC-CCC T ss_conf 61999787999-8798279999999649977178863578999999987676224336996089961489999747-887 Q ss_pred CCEEEEECC Q ss_conf 324786225 Q gi|255764511|r 104 VDGVVFDLG 112 (341) Q Consensus 104 vdgIl~DLG 112 (341) +|.|+.|+- T Consensus 164 yDvIi~D~~ 172 (296) T 1inl_A 164 FDVIIIDST 172 (296) T ss_dssp EEEEEEEC- T ss_pred CCEEEEECC T ss_conf 768999089 No 201 >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Probab=92.88 E-value=0.53 Score=25.73 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=62.1 Q ss_pred CCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHHHH---CCCCEE Q ss_conf 8888998376882889999974---890999809989999999985214--88527711327889876531---233247 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYVPD---KGVDGV 107 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l~~---~~vdgI 107 (341) +...+++--.|.|.=|..+.+. .++++++|.+++....|++.+... .+++.+..+...+.-..+.. ..+|.| T Consensus 58 ~pk~ILEiGt~~G~St~~la~al~~~g~i~tie~~~~~~~~a~~~~~~~g~~~~i~~~~~~~~d~l~~L~~~~~~~fD~i 137 (223) T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFI 137 (223) T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEE T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE T ss_conf 99889998344278999999748888859999448888999999999849976466873452367777650578766599 Q ss_pred EEECCCHHH Q ss_conf 862252078 Q gi|255764511|r 108 VFDLGVSSM 116 (341) Q Consensus 108 l~DLGvSS~ 116 (341) +.|-.-..+ T Consensus 138 fiD~~~~~~ 146 (223) T 3duw_A 138 FIDADKQNN 146 (223) T ss_dssp EECSCGGGH T ss_pred EEECCHHHH T ss_conf 996574668 No 202 >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Probab=92.78 E-value=0.54 Score=25.65 Aligned_cols=78 Identities=24% Similarity=0.326 Sum_probs=52.6 Q ss_pred HHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHH-- Q ss_conf 9868866083-88888998376882889999974---89099980998999999998521488527711327889876-- Q gi|255764511|r 25 LEKVIALLNP-APGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDY-- 98 (341) Q Consensus 25 l~Evl~~l~~-~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~-- 98 (341) |.|+.+-+.. +++..++|.--+-||-++.+++. .++++|+|.-+ .++. ....++++++.+.... T Consensus 10 L~EI~~k~~l~~~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vd~~~---------~~~i-~~~~~~~gd~~~~~~~~~ 79 (180) T 1ej0_A 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---------MDPI-VGVDFLQGDFRDELVMKA 79 (180) T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---------CCCC-TTEEEEESCTTSHHHHHH T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEECCC---------CCCC-CCCEEECCCCHHHHHHHH T ss_conf 999999848667898699973258964289887528984089974564---------6556-896785155002345665 Q ss_pred ----HHHCCCCEEEEECC Q ss_conf ----53123324786225 Q gi|255764511|r 99 ----VPDKGVDGVVFDLG 112 (341) Q Consensus 99 ----l~~~~vdgIl~DLG 112 (341) ....++|-|+.|.+ T Consensus 80 ~~~~~~~~~~DlVlSD~a 97 (180) T 1ej0_A 80 LLERVGDSKVQVVMSDMA 97 (180) T ss_dssp HHHHHTTCCEEEEEECCC T ss_pred HHHHCCCCCCCEEECCCC T ss_conf 543224654248852357 No 203 >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* Probab=92.76 E-value=0.084 Score=30.91 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=45.9 Q ss_pred HHHHHHHH--CCCCCCEEEECCCCCCHHHHHHHHHC-CEEEEECCCHHHHHHHHHHHHHCCCCE Q ss_conf 98688660--83888889983768828899999748-909998099899999999852148852 Q gi|255764511|r 25 LEKVIALL--NPAPGKVILDATFGAGGYSRSFCKMG-SNVIALDRDPFAVSCGQETMRDYKEQF 85 (341) Q Consensus 25 l~Evl~~l--~~~~~g~~iD~TlG~GGHS~~iL~~~-~~liaiDrD~~ai~~a~~~l~~~~~r~ 85 (341) +.++.+.+ .+.+|..++|.-.|.|.|+..++... .+|+|+|..+.++..|++.+...+..+ T Consensus 43 ~~~l~~~~~~~~~~g~~vLDlGCG~G~~~~~l~~~~~~~V~giD~S~~~i~~a~~~~~~~~~~~ 106 (265) T 2i62_A 43 LKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAF 106 (265) T ss_dssp HHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCC T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCC T ss_conf 9999997278888898899967877676999997219989995699999999999987547762 No 204 >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus} Probab=92.67 E-value=0.41 Score=26.45 Aligned_cols=75 Identities=13% Similarity=0.261 Sum_probs=56.4 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCCCEEEE Q ss_conf 838888899837688288999997489-099980998999999998521--48852771132788987653123324786 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVVF 109 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~vdgIl~ 109 (341) ..-++.+++|.--|.|-.|...-+++. +|+|+|..+ +...|++..+. +.+++++++++..++. + ..++|-|+- T Consensus 155 ~~~~~kvVLDvGcGtGiLs~~AA~aGA~kV~avE~S~-~a~~A~~~v~~Ngl~d~I~vi~g~~e~l~--l-pe~vDvIVS 230 (480) T 3b3j_A 155 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--L-PEQVDIIIS 230 (480) T ss_dssp GGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--C-SSCEEEEEC T ss_pred HHCCCCEEEEECCCCCHHHHHHHHCCCCEEEEECCHH-HHHHHHHHHHHCCCCCCEEEEECCHHHCC--C-CCCCCEEEE T ss_conf 5359898999688836999999985998899990959-99999999997499861689975276567--6-766678999 Q ss_pred EC Q ss_conf 22 Q gi|255764511|r 110 DL 111 (341) Q Consensus 110 DL 111 (341) ++ T Consensus 231 E~ 232 (480) T 3b3j_A 231 EP 232 (480) T ss_dssp CC T ss_pred EC T ss_conf 83 No 205 >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Probab=92.53 E-value=0.59 Score=25.43 Aligned_cols=75 Identities=13% Similarity=0.131 Sum_probs=58.7 Q ss_pred CCCCHHHHHHHHHCCC------CCCEEEECCCCCCHHHHHHHHH-CC-EEEEECCCHHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 3340098688660838------8888998376882889999974-89-09998099899999999852148852771132 Q gi|255764511|r 20 HVPVLLEKVIALLNPA------PGKVILDATFGAGGYSRSFCKM-GS-NVIALDRDPFAVSCGQETMRDYKEQFSLFQAT 91 (341) Q Consensus 20 H~PVll~Evl~~l~~~------~~g~~iD~TlG~GGHS~~iL~~-~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~ 91 (341) ..|-+.+.+++.++.. .+..+||.-=|.|.-|.++|+. .+ ++++++.|+.-+..-++.++. .++.+++.. T Consensus 36 ~d~~l~~kIv~~l~l~~~~~~~~~~~IlEIgPG~G~lT~~Ll~~~~pk~~i~iE~D~~~~~~L~~~~~~--~~~~ii~~D 113 (353) T 1i4w_A 36 WNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG--SPLQILKRD 113 (353) T ss_dssp CCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT--SSCEEECSC T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCC--CCCEEEECC T ss_conf 899999999987367633357789969998999889999998525887699997778899999987145--884799464 Q ss_pred HHHHH Q ss_conf 78898 Q gi|255764511|r 92 FSQLQ 96 (341) Q Consensus 92 F~~i~ 96 (341) .-..+ T Consensus 114 ~l~~~ 118 (353) T 1i4w_A 114 PYDWS 118 (353) T ss_dssp TTCHH T ss_pred HHHHH T ss_conf 56532 No 206 >3b3f_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, catalytic domain, alternative splicing, chromatin regulator; HET: SAH; 2.20A {Rattus norvegicus} PDB: 3b3g_A 2v74_B* 2v7e_A Probab=92.52 E-value=0.5 Score=25.91 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=56.4 Q ss_pred HCCCCCCEEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHHHHHHHHCCCCEEE Q ss_conf 0838888899837688288999997489-099980998999999998521--4885277113278898765312332478 Q gi|255764511|r 32 LNPAPGKVILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQLQDYVPDKGVDGVV 108 (341) Q Consensus 32 l~~~~~g~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i~~~l~~~~vdgIl 108 (341) ....++.+++|.--|.|..|....+.+. +|+|+|..+.+ ..+++..+. +.++++++++...++. ++ .++|.|+ T Consensus 42 ~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~~~e~s~~~-~~~~~~~~~n~~~~~I~~i~~~~~~l~--l~-~~~Dviv 117 (341) T 3b3f_A 42 HTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVS--LP-EQVDIII 117 (341) T ss_dssp GGGTTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCC--CS-SCEEEEE T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHH-HHHHHHHHHCCCCCCCEEEEEEHHHCC--CC-CCCCEEE T ss_conf 4225979899966685399999997699989999790999-999999998599864007960366525--67-6633798 Q ss_pred EEC Q ss_conf 622 Q gi|255764511|r 109 FDL 111 (341) Q Consensus 109 ~DL 111 (341) .++ T Consensus 118 se~ 120 (341) T 3b3f_A 118 SEP 120 (341) T ss_dssp CCC T ss_pred EEC T ss_conf 750 No 207 >3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A Probab=92.49 E-value=0.17 Score=28.88 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=59.5 Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHH-----C-CCCE Q ss_conf 116078334009868866083888889983768828899999748--9099980998999999998521-----4-8852 Q gi|255764511|r 14 HHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRD-----Y-KEQF 85 (341) Q Consensus 14 ~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~-----~-~~r~ 85 (341) .++..+|. |+--+--...+.|. .++-.-+|.||=..++|+.. .++..+|.||+.+..|++.+.. + ..|+ T Consensus 64 ~de~~Yhe--~l~h~pl~~~~~p~-~VLiiGgG~G~~~~e~lk~~~v~~v~~VEiD~~Vi~~a~~~~~~~~~~~~~dprv 140 (294) T 3adn_A 64 RDEFIYHE--MMTHVPLLAHGHAK-HVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRF 140 (294) T ss_dssp TTHHHHHH--HHHHHHHHHSTTCC-EEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTC T ss_pred CCHHHHHH--HHHHHHHHCCCCCC-EEEEECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCE T ss_conf 76789999--99888875099856-6999889837999999981996638997178999999874484113554678857 Q ss_pred EEECCCHHHHHHHHHHCCCCEEEEEC Q ss_conf 77113278898765312332478622 Q gi|255764511|r 86 SLFQATFSQLQDYVPDKGVDGVVFDL 111 (341) Q Consensus 86 ~~~~~~F~~i~~~l~~~~vdgIl~DL 111 (341) .++.+.-...-+- ....+|.|+.|+ T Consensus 141 ~i~~~Da~~~l~~-~~~~yDvIi~D~ 165 (294) T 3adn_A 141 KLVIDDGVNFVNQ-TSQTFDVIISDC 165 (294) T ss_dssp CEECSCSCC---C-CCCCEEEEEECC T ss_pred EEEECHHHHHHHH-CCCCCCEEEEEC T ss_conf 9995168999851-688777899808 No 208 >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Probab=91.57 E-value=0.64 Score=25.18 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=54.2 Q ss_pred CCCCCC----HHHHHHHHH-CCEEEEE-CCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 376882----889999974-8909998-099899999999852148-852771132788987653123324786225207 Q gi|255764511|r 43 ATFGAG----GYSRSFCKM-GSNVIAL-DRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 43 ~TlG~G----GHS~~iL~~-~~~liai-DrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS 115 (341) +-.|.| +|..+++.. +.+|+|+ |.|+..+..+++.+++++ .....+...|++.++++...++|.|+.=.- .. T Consensus 24 ~iiG~G~~g~~h~~~~~~~~~~~~vav~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD~V~I~tp-~~ 102 (444) T 2ixa_A 24 AFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP-WE 102 (444) T ss_dssp EEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC-GG T ss_pred EEECCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCC-CH T ss_conf 99948199999999997089948999976988899999999998289630002654366999963899988998588-27 Q ss_pred HHHHHHHH Q ss_conf 88876540 Q gi|255764511|r 116 MQIDCGDR 123 (341) Q Consensus 116 ~Qld~~~R 123 (341) .|.+-... T Consensus 103 ~H~~~~~~ 110 (444) T 2ixa_A 103 WHHEHGVA 110 (444) T ss_dssp GHHHHHHH T ss_pred HHHHHHHH T ss_conf 68999999 No 209 >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Probab=91.22 E-value=0.82 Score=24.50 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=55.1 Q ss_pred CCCEEEECCCCCCHHHHHHH-HH---CCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHHHHHH-H-------- Q ss_conf 88889983768828899999-74---890999809989999999985214--885277113278898765-3-------- Q gi|255764511|r 36 PGKVILDATFGAGGYSRSFC-KM---GSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQLQDYV-P-------- 100 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~iL-~~---~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i~~~l-~-------- 100 (341) ....++.-.-+. |+|...+ +. .++|+.+|.|++....|++.++.. .+++.++.++..+.-.-+ . T Consensus 60 ~ak~iLEiGT~~-GySal~lA~al~~~g~v~tie~~~~~~~~A~~~~~~ag~~~~I~~~~g~A~e~L~~L~~~~~~~~~~ 138 (239) T 2hnk_A 60 GAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239) T ss_dssp TCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG T ss_pred CCCEEEEEECCC-CHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHCCCCCCCC T ss_conf 997799972545-8899999971787886899945388899999999987996259999616899999988452333211 Q ss_pred ------HCCCCEEEEECCCHHHH Q ss_conf ------12332478622520788 Q gi|255764511|r 101 ------DKGVDGVVFDLGVSSMQ 117 (341) Q Consensus 101 ------~~~vdgIl~DLGvSS~Q 117 (341) ...+|.|++|--=..+. T Consensus 139 ~~~~~~~~~fD~IFiDa~K~~Y~ 161 (239) T 2hnk_A 139 SDFAFGPSSIDLFFLDADKENYP 161 (239) T ss_dssp TTTCCSTTCEEEEEECSCGGGHH T ss_pred CCCCCCCCCCCEEEEECCHHHHH T ss_conf 00124677756899937877759 No 210 >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 Probab=90.52 E-value=0.42 Score=26.39 Aligned_cols=90 Identities=16% Similarity=0.081 Sum_probs=55.3 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH----HC----------------CEEEEECCCHHHHHHHHHHHHHCCC Q ss_conf 098688660838888899837688288999997----48----------------9099980998999999998521488 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK----MG----------------SNVIALDRDPFAVSCGQETMRDYKE 83 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~----~~----------------~~liaiDrD~~ai~~a~~~l~~~~~ 83 (341) +.+-+++.+.|.++..++|.+.|.||--.+..+ .. ..++|+|.|+.+...|+-.+--.+- T Consensus 157 Iv~~mv~ll~p~~~~~I~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~g~ 236 (541) T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 236 (541) T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC T ss_conf 99999986289988730465778560579999999984366211104678888876663020669999999864663456 Q ss_pred C------EEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 5------277113278898765312332478622520 Q gi|255764511|r 84 Q------FSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 84 r------~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) . ..+...++-.-+ .....++|.|+.+-=++ T Consensus 237 ~~~~~~~~~~~~~~~l~~d-~~~~~~fD~Vl~NPPfg 272 (541) T 2ar0_A 237 EGNLDHGGAIRLGNTLGSD-GENLPKAHIVATNPPFG 272 (541) T ss_dssp CCBGGGTBSEEESCTTSHH-HHTSCCEEEEEECCCCT T ss_pred CCCCCCCCCHHCCCCHHHC-CCCCCCCCEEEECCCCC T ss_conf 3011347502104504330-44443466687369976 No 211 >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Probab=90.46 E-value=0.67 Score=25.09 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=42.5 Q ss_pred HHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHH Q ss_conf 86886608388888998376882889999974---89099980998999999998521 Q gi|255764511|r 26 EKVIALLNPAPGKVILDATFGAGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 26 ~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~ 80 (341) .-|++.|.-..-..+||--.|.|.--..+|+. ..+++|+|.|..++..+.++|.. T Consensus 711 ~aVl~iLr~~~akkVlDLGCGEGkLL~~LL~~~~~iE~IvGVDIS~~~Le~A~~rL~~ 768 (950) T 3htx_A 711 EYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHV 768 (950) T ss_dssp HHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHHCCC T ss_conf 9999999875998899738887099999862876600799997799999999874484 No 212 >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Probab=90.14 E-value=1 Score=23.88 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=63.2 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH Q ss_conf 33400986886608388888998376882889999974890999809989999999985214885277113278898765 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV 99 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l 99 (341) ..+..++++++..++.++ .+|+---|.|.=|+.+++.+.+|+|++.|+.......+++..+. ...++..+...+ .. T Consensus 31 ~d~~i~~~iv~~~~~~~~-~VlEIGpG~G~LT~~L~~~~~~v~avE~D~~l~~~L~~~~~~~~--~~~i~~~~~~~~-~~ 106 (271) T 3fut_A 31 VSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLP--VRLVFQDALLYP-WE 106 (271) T ss_dssp CCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSS--EEEEESCGGGSC-GG T ss_pred CCHHHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCC--HHHHHHHHHHHH-HH T ss_conf 898999999996589999-88996797719999999608967999837067888875433301--033346555310-33 Q ss_pred HHCCCCEEEEECC--CHHHHH Q ss_conf 3123324786225--207888 Q gi|255764511|r 100 PDKGVDGVVFDLG--VSSMQI 118 (341) Q Consensus 100 ~~~~vdgIl~DLG--vSS~Ql 118 (341) ...+..-|+.+|= +||.=+ T Consensus 107 ~~~~~~~vv~NLPY~Ist~ii 127 (271) T 3fut_A 107 EVPQGSLLVANLPYHIATPLV 127 (271) T ss_dssp GSCTTEEEEEEECSSCCHHHH T ss_pred CCCCCEEEECCCCHHHHHHHH T ss_conf 077642672365213267999 No 213 >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Probab=88.90 E-value=0.93 Score=24.16 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=66.6 Q ss_pred CCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH Q ss_conf 0783340098688660838888899837688288----999997489099980998999999998521488527711327 Q gi|255764511|r 17 IGDHVPVLLEKVIALLNPAPGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF 92 (341) Q Consensus 17 ~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F 92 (341) +....|-+-+.+++.++.+.--.+| |-|.+|= ++.+++.+.+|+..|+++++.+.+.+..+.++.++.++..+. T Consensus 15 ~p~~~p~~~~~~mdlf~L~gKvalV--TGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~g~~~~~~~~Dv 92 (279) T 3ctm_A 15 LPTKAPTLSKNVLDLFSLKGKVASV--TGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNI 92 (279) T ss_dssp SSCCCCCCCSSGGGGGCCTTCEEEE--TTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCT T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEE--ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 9999999888873444889998999--48786999999999998799899996886889999999986599569999527 Q ss_pred HH---HHHHHHH-----CCCCEEEEECCCH Q ss_conf 88---9876531-----2332478622520 Q gi|255764511|r 93 SQ---LQDYVPD-----KGVDGVVFDLGVS 114 (341) Q Consensus 93 ~~---i~~~l~~-----~~vdgIl~DLGvS 114 (341) ++ +.+.+.. .++|.++-.-|++ T Consensus 93 s~~~~v~~~~~~~~~~~G~iDilVnnAG~~ 122 (279) T 3ctm_A 93 SDPKSVEETISQQEKDFGTIDVFVANAGVT 122 (279) T ss_dssp TCHHHHHHHHHHHHHHHSCCSEEEECGGGS T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 999999999999999849988999888543 No 214 >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} Probab=88.13 E-value=1.4 Score=22.97 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=32.8 Q ss_pred CCCCCHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHH-H-CCEEE---E-EC-CCHHHHHHHHHHH Q ss_conf 83340098688660----838888899837688288999997-4-89099---9-80-9989999999985 Q gi|255764511|r 19 DHVPVLLEKVIALL----NPAPGKVILDATFGAGGYSRSFCK-M-GSNVI---A-LD-RDPFAVSCGQETM 78 (341) Q Consensus 19 ~H~PVll~Evl~~l----~~~~~g~~iD~TlG~GGHS~~iL~-~-~~~li---a-iD-rD~~ai~~a~~~l 78 (341) .=.+|+.+|+.++= .+.+|+++..+++-.. + +..|. + ..+|+ + +. .+.+.+...-..+ T Consensus 16 GlE~~la~El~~lg~~~~~~~~g~V~f~~~~~~~-~-~~~l~sR~a~RV~~~l~~f~~~~~d~Ly~~~~~i 84 (385) T 3ldu_A 16 GMEKMLAREITNLGYEIIKTEDGRITYKTDEFGI-A-KSNMWLRCAERVHLKIAEFEAKSFDELFENTKRI 84 (385) T ss_dssp TCHHHHHHHHHHTTCEEEEEETTEEEEEECTTHH-H-HHHHHCSSCSCCEEEEEEEECSSHHHHHHHHHTS T ss_pred CHHHHHHHHHHHCCCCCCEEECCEEEEEECHHHH-H-HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCC T ss_conf 5499999999965986318866689999789999-9-9998623298773101100059999999887429 No 215 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=88.05 E-value=0.37 Score=26.70 Aligned_cols=41 Identities=20% Similarity=0.425 Sum_probs=33.1 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHC Q ss_conf 78999999885202445338998725502389999998641 Q gi|255764511|r 226 EELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 (341) Q Consensus 226 ~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~ 266 (341) ...+.+|..+..+|+|||++++..|..-++..++.++..+. T Consensus 101 ~d~~~~l~ei~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~ 141 (239) T 1xxl_A 101 SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLN 141 (239) T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHH T ss_conf 68999999999980838299999878889989999999998 No 216 >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Probab=87.86 E-value=1.5 Score=22.86 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=54.9 Q ss_pred CCCEEEECCCCCCHHHH-HHHHH---CCEEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHHH-HHHHHH---CCCC Q ss_conf 88889983768828899-99974---89099980998999999998521--488527711327889-876531---2332 Q gi|255764511|r 36 PGKVILDATFGAGGYSR-SFCKM---GSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQL-QDYVPD---KGVD 105 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~-~iL~~---~~~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~i-~~~l~~---~~vd 105 (341) +..++-=+| +. |+|. .+... .++|+.+|.||+....|++.++. +.+++.++.++..+. .++... ..+| T Consensus 73 ak~iLEiGT-~~-GyStl~lA~al~~~g~v~tiE~~~~~~~~A~~~~~~ag~~~~i~~~~g~a~e~l~~l~~~~~~~~fD 150 (232) T 3cbg_A 73 AKQVLEIGV-FR-GYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232) T ss_dssp CCEEEEECC-TT-SHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE T ss_pred CCEEEEEEC-CC-CHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHCCCCCCCE T ss_conf 978999843-43-8999999985899858999976741489999999986998628999625899999997325677601 Q ss_pred EEEEECCCHHH Q ss_conf 47862252078 Q gi|255764511|r 106 GVVFDLGVSSM 116 (341) Q Consensus 106 gIl~DLGvSS~ 116 (341) .|+.|---+.+ T Consensus 151 ~iFiDadK~~y 161 (232) T 3cbg_A 151 LIFIDADKRNY 161 (232) T ss_dssp EEEECSCGGGH T ss_pred EEEEECCHHHH T ss_conf 89960888889 No 217 >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} Probab=87.65 E-value=1.5 Score=22.78 Aligned_cols=78 Identities=15% Similarity=0.305 Sum_probs=50.9 Q ss_pred HHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH------HHH Q ss_conf 9868866083-888889983768828899999748909998099899999999852148852771132788------987 Q gi|255764511|r 25 LEKVIALLNP-APGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ------LQD 97 (341) Q Consensus 25 l~Evl~~l~~-~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~------i~~ 97 (341) |.|+.+-+.. +++..++|.--+-||-++.+.+..++++|+|..+- .+. ..+.++++++.+ +.. T Consensus 13 L~EI~~kf~l~k~~~~vlDLg~aPGgw~q~~~~~~~~v~~vd~~~~---------~~~-~~v~~~~gD~~~~~~~~~~~~ 82 (191) T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM---------EEI-AGVRFIRCDIFKETIFDDIDR 82 (191) T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC---------CCC-TTCEEEECCTTSSSHHHHHHH T ss_pred HHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCC---------CCC-CCEEEECCCCCCHHHHHHHHH T ss_conf 9999998487679987998410298064876612662265504556---------566-781785255542568898888 Q ss_pred HHH---HCCCCEEEEECC Q ss_conf 653---123324786225 Q gi|255764511|r 98 YVP---DKGVDGVVFDLG 112 (341) Q Consensus 98 ~l~---~~~vdgIl~DLG 112 (341) +.. ..++|-|+.|.+ T Consensus 83 ~~~~~~~~~~DlVlSD~a 100 (191) T 3dou_A 83 ALREEGIEKVDDVVSDAM 100 (191) T ss_dssp HHHHHTCSSEEEEEECCC T ss_pred HHHHCCCCCCCEEECCCC T ss_conf 776504786688980464 No 218 >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Probab=86.68 E-value=0.49 Score=25.93 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEECCCHHH Q ss_conf 57899999988520244533899872550238 Q gi|255764511|r 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDR 256 (341) Q Consensus 225 l~~L~~~L~~~~~~L~~gGrl~VISFHSLEDR 256 (341) ++.+...|..+..+|+|||+++++||.+-+.| T Consensus 135 ~~~~~~~l~e~~r~LkpgG~~i~~~~~~p~~r 166 (215) T 2pxx_A 135 VHTVDQVLSEVSRVLVPGGRFISMTSAAPHFR 166 (215) T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEESCCHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH T ss_conf 43199999999987735878999956983777 No 219 >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} Probab=86.41 E-value=1.8 Score=22.35 Aligned_cols=56 Identities=21% Similarity=0.325 Sum_probs=35.6 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH-----------------HCCEEEEECCCHHHHHHHHHHHHHC Q ss_conf 98688660838888899837688288999997-----------------4890999809989999999985214 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCK-----------------MGSNVIALDRDPFAVSCGQETMRDY 81 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~-----------------~~~~liaiDrD~~ai~~a~~~l~~~ 81 (341) .+=+++.+.|.++ .++|.+.|.||--.+..+ ...+++|+|.|+.+...|+-.+--. T Consensus 234 v~lmv~ll~p~~~-~I~DPacGsGgfLi~a~~~i~~~~~~~~~~~~~~~~~~~l~G~Ei~~~~~~la~~nm~l~ 306 (544) T 3khk_A 234 VTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR 306 (544) T ss_dssp HHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCCCC-CEECCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHCEEECCCCCHHHHHHHHHHHHHC T ss_conf 9999862389988-370377776178999999999824522222022220110615038779999999889861 No 220 >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, antibiotic biosynthesis, NADPH; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Probab=85.82 E-value=1.9 Score=22.16 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=52.1 Q ss_pred CCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHH---HHH----H-CCCCEEEEEC Q ss_conf 76882889----9999748909998099899999999852148852771132788987---653----1-2332478622 Q gi|255764511|r 44 TFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVP----D-KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~---~l~----~-~~vdgIl~DL 111 (341) |-|.+|== +.+++.+.+|+..||+++.+..+.+.++..+.++.++..+.++.+. .+. . .++|.++-+- T Consensus 13 TGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilVnNA 92 (247) T 2jah_A 13 TGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNA 92 (247) T ss_dssp ESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 38787899999999998799899998989999999999985499389999108999999999999999859970999899 Q ss_pred CCHH Q ss_conf 5207 Q gi|255764511|r 112 GVSS 115 (341) Q Consensus 112 GvSS 115 (341) |++. T Consensus 93 G~~~ 96 (247) T 2jah_A 93 GIML 96 (247) T ss_dssp CCCC T ss_pred CCCC T ss_conf 8788 No 221 >2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A* Probab=85.65 E-value=1.9 Score=22.11 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=22.8 Q ss_pred EEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHH Q ss_conf 99837688288999997489-09998099899999999852 Q gi|255764511|r 40 ILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMR 79 (341) Q Consensus 40 ~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~ 79 (341) ++=.=.|.||=.+.+|+..+ +|..+|.||+.+..|++-+. T Consensus 192 VLIIGGGdG~~~revlk~~~~~V~~VEID~~Vve~akk~~~ 232 (364) T 2qfm_A 192 VLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMR 232 (364) T ss_dssp EEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCC T ss_pred EEEEECCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH T ss_conf 99996994399999986178428997103899999998656 No 222 >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme structure, ATP-binding, nucleotide-binding; HET: SAM; 1.70A {Yokose virus} Probab=85.56 E-value=0.28 Score=27.48 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=52.2 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-C-CEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974-8-909998099899999999852148-852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-G-SNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~-~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~ 100 (341) =|.|+++-+...+.|.+||-=.+.||-|...+.. + .+|+|+|.-...... .-+...+. +.+.+.. ... + ..+. T Consensus 78 KL~~~~ekf~l~p~g~VVDLGaapGGWSqva~~~~g~~~V~gvDvG~~~~~~-p~~~~~~~~n~v~~~~-~~d-v-~~~~ 153 (282) T 3gcz_A 78 KLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEK-PIMRTTLGWNLIRFKD-KTD-V-FNME 153 (282) T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCC-CCCCCBTTGGGEEEEC-SCC-G-GGSC T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCC-CCCCCCCCCCCEEEEE-CHH-H-HHCC T ss_conf 9999998468575883887377898489999875388679999817876677-6102114776156542-000-2-3238 Q ss_pred HCCCCEEEEECCCHH Q ss_conf 123324786225207 Q gi|255764511|r 101 DKGVDGVVFDLGVSS 115 (341) Q Consensus 101 ~~~vdgIl~DLGvSS 115 (341) ...+|-|+-|+|-|| T Consensus 154 ~~~~D~VlcDia~sS 168 (282) T 3gcz_A 154 VIPGDTLLCDIGESS 168 (282) T ss_dssp CCCCSEEEECCCCCC T ss_pred CCCCCEEEECCCCCC T ss_conf 876898995787778 No 223 >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* Probab=85.53 E-value=0.36 Score=26.79 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=52.8 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHH-HC-CEEEEECCCHHHHHHHHHHH-HHCCCC-EEEECCCHHHHHHHH Q ss_conf 098688660838888899837688288999997-48-90999809989999999985-214885-277113278898765 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCK-MG-SNVIALDRDPFAVSCGQETM-RDYKEQ-FSLFQATFSQLQDYV 99 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~-~~-~~liaiDrD~~ai~~a~~~l-~~~~~r-~~~~~~~F~~i~~~l 99 (341) =|.++++-+...+.|.+||.=.|.||-|...+. .+ ..|+|+|.-..-. ...+. ..+... +.+. .. .....+ T Consensus 70 KL~~~~ekf~l~~~g~VVDLGas~GGwTqva~~~~ga~~V~avDvG~~~~--~~p~~~~~~~~n~~~~~-~~--~dv~~~ 144 (276) T 2wa2_A 70 KLAWIDERGGVELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGH--EKPRLVETFGWNLITFK-SK--VDVTKM 144 (276) T ss_dssp HHHHHHHTTSCCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTS--CCCCCCCCTTGGGEEEE-CS--CCGGGC T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCC--CCCCCCCCCCCCHHHHH-HH--HHHHHC T ss_conf 99999983797768848980778870999998764885799998278765--57533320035612100-33--322112 Q ss_pred HHCCCCEEEEECCCHHH Q ss_conf 31233247862252078 Q gi|255764511|r 100 PDKGVDGVVFDLGVSSM 116 (341) Q Consensus 100 ~~~~vdgIl~DLGvSS~ 116 (341) ....+|-|+.|+|.||. T Consensus 145 ~~~~~D~vvcDis~~S~ 161 (276) T 2wa2_A 145 EPFQADTVLCDIGESNP 161 (276) T ss_dssp CCCCCSEEEECCCCCCS T ss_pred CCCCCCEEEEECCCCCC T ss_conf 89988889980544578 No 224 >3cvo_A Methyltransferase-like protein of unknown function; YP_167254.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} Probab=85.12 E-value=1.7 Score=22.46 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=44.2 Q ss_pred CCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH-CCEEEEECCCHHHHHHHHHHHH Q ss_conf 987776432011011607833400986886608388888998376882889999974-8909998099899999999852 Q gi|255764511|r 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM-GSNVIALDRDPFAVSCGQETMR 79 (341) Q Consensus 1 ~~~~~~~~m~~~~~~~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~-~~~liaiDrD~~ai~~a~~~l~ 79 (341) |.+++-++|.--+.+.- -..-+|.+.++ ++.+++- +|.||=|..+++. +.+++.+|-|++-....++.+. T Consensus 2 ~~~~~~~~~~p~lt~~~--~e~~~l~~~l~-----~~~~iLE--~GSGgST~~~a~~~~~~I~SVE~d~~W~~~v~~~l~ 72 (202) T 3cvo_A 2 MDDQSGDQMRPELTMPP--AEAEALRMAYE-----EAEVILE--YGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLA 72 (202) T ss_dssp -------CCCCCCCSCH--HHHHHHHHHHH-----HCSEEEE--ESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCH--HHHHHHHHHHC-----CCCEEEE--ECCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH T ss_conf 87667776687778998--89999999825-----7999999--689898999998179808996799999999999865 Q ss_pred HC Q ss_conf 14 Q gi|255764511|r 80 DY 81 (341) Q Consensus 80 ~~ 81 (341) .. T Consensus 73 ~~ 74 (202) T 3cvo_A 73 AN 74 (202) T ss_dssp HS T ss_pred HC T ss_conf 41 No 225 >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311} Probab=84.24 E-value=1.7 Score=22.44 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=62.5 Q ss_pred HHHHHHHHHCCCCCC-EEEECCCCCCHHHHHHHHHCC-EEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCHHHHHHH-H Q ss_conf 098688660838888-899837688288999997489-0999809989999999985214885277-11327889876-5 Q gi|255764511|r 24 LLEKVIALLNPAPGK-VILDATFGAGGYSRSFCKMGS-NVIALDRDPFAVSCGQETMRDYKEQFSL-FQATFSQLQDY-V 99 (341) Q Consensus 24 ll~Evl~~l~~~~~g-~~iD~TlG~GGHS~~iL~~~~-~liaiDrD~~ai~~a~~~l~~~~~r~~~-~~~~F~~i~~~-l 99 (341) =|...++.+.+...| +.+|----.||-|..+|+.+. +|||+|.-..-+. ..|.. ..|+.. -..|+.++... + T Consensus 72 KL~~al~~f~i~v~gkicLDIGaSTGGFTdvLLq~GA~~VyaVDVG~~QL~---~~Lr~-D~RV~~~E~tN~R~l~~~~~ 147 (291) T 3hp7_A 72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLV---WKLRQ-DDRVRSMEQYNFRYAEPVDF 147 (291) T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSC---HHHHT-CTTEEEECSCCGGGCCGGGC T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCC---HHHHC-CCCEEEECCCCHHHHHHHHH T ss_conf 999999976976166699977878750999999849876999835722105---99865-99854312763866028661 Q ss_pred HHCCCCEEEEECCCHHHH Q ss_conf 312332478622520788 Q gi|255764511|r 100 PDKGVDGVVFDLGVSSMQ 117 (341) Q Consensus 100 ~~~~vdgIl~DLGvSS~Q 117 (341) .+..+|.|..|+-.-|.. T Consensus 148 ~~~~~Dliv~DvSFISl~ 165 (291) T 3hp7_A 148 TEGLPSFASIDVSFISLN 165 (291) T ss_dssp TTCCCSEEEECCSSSCGG T ss_pred CCCCCCEEEEECCHHHHH T ss_conf 777877788502212199 No 226 >2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7 Probab=83.07 E-value=0.45 Score=26.20 Aligned_cols=45 Identities=27% Similarity=0.455 Sum_probs=35.3 Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCCHHHHHHH Q ss_conf 899986222578998999744630268899999999752-124321379999 Q gi|255764511|r 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQS-APFQTTQDLSSL 194 (341) Q Consensus 144 A~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~-~~i~TT~eL~~i 194 (341) --+.||+.+.++|..+ .. -..+.|++||.+|+. ++|.+-.||.++ T Consensus 30 ~L~~iNtAs~~eL~~l-pg-----Ig~~~A~~Iv~~R~~~G~f~sledL~~v 75 (98) T 2edu_A 30 ILDLLNEGSARDLRSL-QR-----IGPKKAQLIVGWRELHGPFSQVEDLERV 75 (98) T ss_dssp HHHHHHHSCHHHHHHS-TT-----CCHHHHHHHHHHHHHHCCCSSGGGGGGS T ss_pred HCCCCCCCCHHHHHHC-CC-----CCHHHHHHHHHHHHHCCCCCCHHHHHCC T ss_conf 4100437899999647-99-----8999999999999985992889998448 No 227 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Probab=81.55 E-value=0.63 Score=25.26 Aligned_cols=29 Identities=14% Similarity=0.465 Sum_probs=24.4 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 05789999998852024453389987255 Q gi|255764511|r 224 EIEELAQGLRSAEKALKAGGLLIVVSFHS 252 (341) Q Consensus 224 El~~L~~~L~~~~~~L~~gGrl~VISFHS 252 (341) .++..+.+|..+..+|+|||+++|+.|.. T Consensus 87 ~~~~~~~~l~~i~r~LkpgG~l~i~~~~~ 115 (170) T 3i9f_A 87 DMDDKQHVISEVKRILKDDGRVIIIDWRK 115 (170) T ss_dssp TCSCHHHHHHHHHHHEEEEEEEEEEEECS T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 17799999999999758780999999075 No 228 >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, human, structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Probab=80.71 E-value=3 Score=20.84 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=53.0 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHH---HHH----H-CC Q ss_conf 8888998376882889----9999748909998099899999999852148852771132788987---653----1-23 Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVP----D-KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~---~l~----~-~~ 103 (341) .|.+ +=-|-|.+|== +.+++.+.+|+..|||++.++...+.++..+.++..+....++-++ .+. . .+ T Consensus 30 ~GKv-alITGas~GIG~a~A~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 108 (272) T 1yb1_A 30 TGEI-VLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 108 (272) T ss_dssp TTCE-EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC T ss_pred CCCE-EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC T ss_conf 9988-999385769999999999987998999989999999999999854993899997279989999999999997299 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++-+-|++ T Consensus 109 iDilVnnAG~~ 119 (272) T 1yb1_A 109 VSILVNNAGVV 119 (272) T ss_dssp CSEEEECCCCC T ss_pred CEEEEECCCCC T ss_conf 64999899777 No 229 >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis ma-4680} PDB: 3go4_A* Probab=80.33 E-value=3.1 Score=20.76 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=56.0 Q ss_pred HHHHHHHHCCCCC-CEEEECCCC--CCHHHHHHHHH---CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHH Q ss_conf 9868866083888-889983768--82889999974---8909998099899999999852148-852771132788987 Q gi|255764511|r 25 LEKVIALLNPAPG-KVILDATFG--AGGYSRSFCKM---GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQD 97 (341) Q Consensus 25 l~Evl~~l~~~~~-g~~iD~TlG--~GGHS~~iL~~---~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~ 97 (341) |.-.+.+|....| ..|||.--| ..|+.-.+... .++|+.+|.||.++..++.++.... .+..++...+.+.+. T Consensus 66 l~RaVr~la~e~GirQfLDlGsGlPt~~n~heva~~~~P~arVvyvD~dp~vlaharalL~~~~~~~~~~v~aD~rdp~~ 145 (277) T 3giw_A 66 MNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPAS 145 (277) T ss_dssp HHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCEEEEECCCCCCHH T ss_conf 99999999985798789994638898874999998748997699994978899999997337987738999576668345 Q ss_pred HHHH Q ss_conf 6531 Q gi|255764511|r 98 YVPD 101 (341) Q Consensus 98 ~l~~ 101 (341) ++.. T Consensus 146 il~~ 149 (277) T 3giw_A 146 ILDA 149 (277) T ss_dssp HHTC T ss_pred HHCC T ss_conf 4315 No 230 >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Probab=80.00 E-value=3.2 Score=20.70 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=49.8 Q ss_pred CCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH---HHHHHHHHH-----CCCCEEEEEC Q ss_conf 76882889----99997489099980998999999998521488527711327---889876531-----2332478622 Q gi|255764511|r 44 TFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF---SQLQDYVPD-----KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F---~~i~~~l~~-----~~vdgIl~DL 111 (341) |=|.+|=- +.+++.+.+|+..||+++.+..+.+.+++.+.++.++..+. +++.+.+.. ..+|.++-+- T Consensus 13 TGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnnA 92 (262) T 1zem_A 13 TGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA 92 (262) T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 38787899999999998799899998998999999999985299389998238999999999999999839997999898 Q ss_pred CCH Q ss_conf 520 Q gi|255764511|r 112 GVS 114 (341) Q Consensus 112 GvS 114 (341) |++ T Consensus 93 g~~ 95 (262) T 1zem_A 93 GYQ 95 (262) T ss_dssp CCC T ss_pred CCC T ss_conf 766 No 231 >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} Probab=79.84 E-value=3.2 Score=20.66 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=52.4 Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHH-----CCEEEEECCCHHHHHHHHHHHHHCC---CCEEEECCCHHHHHH-HHHHCC Q ss_conf 8388888998376882889999974-----8909998099899999999852148---852771132788987-653123 Q gi|255764511|r 33 NPAPGKVILDATFGAGGYSRSFCKM-----GSNVIALDRDPFAVSCGQETMRDYK---EQFSLFQATFSQLQD-YVPDKG 103 (341) Q Consensus 33 ~~~~~g~~iD~TlG~GGHS~~iL~~-----~~~liaiDrD~~ai~~a~~~l~~~~---~r~~~~~~~F~~i~~-~l~~~~ 103 (341) .+.++..+.|-+.|.||=-.+..+. ...++|.|.|+.+...|+-.+--.+ .++.+.++++-.-+. .....+ T Consensus 218 ~~~~~~~I~DPacGsGgfL~~a~~~~~~~~~~~~~G~e~~~~~~~la~~nl~l~g~~~~~~~i~~~d~l~~~~~~~~~~~ 297 (542) T 3lkd_A 218 EDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTN 297 (542) T ss_dssp TTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCC T ss_pred CCCCCCEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCC T ss_conf 56789868327788455889888877500555787442667999999998787246542220320565444443232320 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.|+.+-=++ T Consensus 298 fD~Il~NPPfg 308 (542) T 3lkd_A 298 FDGVLMNPPYS 308 (542) T ss_dssp BSEEEECCCTT T ss_pred EEEEEECCCCC T ss_conf 00356348867 No 232 >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} Probab=79.55 E-value=3.3 Score=20.61 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=55.7 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCC--EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH-HHHHHH Q ss_conf 098688660838888899837688288999997489--09998099899999999852148852771132788-987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGS--NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ-LQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~--~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~-i~~~l~ 100 (341) +++..++.....+ |.++.|-++.|+-...+.+..+ +++|||.=...- -....++..++.++|.+ +..++. T Consensus 29 ~l~~a~~~~~~~~-G~vlE~Gv~~G~s~~~l~~~l~~r~i~gFDtF~g~~------~~~~~~~~~lv~G~~~eTlp~f~~ 101 (174) T 3iht_A 29 CLEHAIAQTAGLS-GPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASH------PDSTPPEAQLILGDIRETLPATLE 101 (174) T ss_dssp HHHHHHHHTTTCC-SCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCC------GGGCCCGGGEEESCHHHHHHHHHH T ss_pred HHHHHHHHHCCCC-CCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCCC------CCCCCCCCEEEEECCHHHHHHHHH T ss_conf 9999998626899-868998414764499999877998699997635789------989999747983071777799997 Q ss_pred HC--CCCEEEEECCCHH Q ss_conf 12--3324786225207 Q gi|255764511|r 101 DK--GVDGVVFDLGVSS 115 (341) Q Consensus 101 ~~--~vdgIl~DLGvSS 115 (341) .. .+..+-+|+|.=+ T Consensus 102 ~~~~~iaflHiD~d~y~ 118 (174) T 3iht_A 102 RFGATASLVHADLGGHN 118 (174) T ss_dssp HHCSCEEEEEECCCCSC T ss_pred HCCCCEEEEEEECCCCC T ss_conf 47885689997147575 No 233 >3imf_A Short chain dehydrogenase; structural genomics, infectious diseases, center for structural genomics of infectious diseases, oxidoreductase; HET: MSE; 1.99A {Bacillus anthracis str} Probab=79.38 E-value=3.3 Score=20.57 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=51.5 Q ss_pred CCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEE Q ss_conf 37688288----999997489099980998999999998521488527711327889---876531-----233247862 Q gi|255764511|r 43 ATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFD 110 (341) Q Consensus 43 ~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~D 110 (341) -|-|.+|= ++.+++.+.+|+..|++++.++.+.+.++.++.++.++..+.++- .+.+.. ..+|.++-. T Consensus 11 ITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn 90 (257) T 3imf_A 11 ITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRIDILINN 90 (257) T ss_dssp ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEC T ss_conf 93898789999999999879989999798899999999998569948999930899999999999999983999799989 Q ss_pred CCCH Q ss_conf 2520 Q gi|255764511|r 111 LGVS 114 (341) Q Consensus 111 LGvS 114 (341) -|+. T Consensus 91 AG~~ 94 (257) T 3imf_A 91 AAGN 94 (257) T ss_dssp CCCC T ss_pred CCCC T ss_conf 9788 No 234 >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferase; tRNA modification enzyme, guanine 26, N(2),N(2)- dimethyltransferase; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* Probab=79.14 E-value=3.4 Score=20.52 Aligned_cols=96 Identities=17% Similarity=0.074 Sum_probs=65.1 Q ss_pred CCCCEEEECCCCCCHHHHHHHH-HC-CEEEEECCCHHHHHHHHHHHHHCC----------------CCEEEECCCHHHHH Q ss_conf 8888899837688288999997-48-909998099899999999852148----------------85277113278898 Q gi|255764511|r 35 APGKVILDATFGAGGYSRSFCK-MG-SNVIALDRDPFAVSCGQETMRDYK----------------EQFSLFQATFSQLQ 96 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~iL~-~~-~~liaiDrD~~ai~~a~~~l~~~~----------------~r~~~~~~~F~~i~ 96 (341) ..+..++|+.-|.|.-+.-.+. .+ .+|++.|.|++|++.++++++-.. +++.+.+.....+. T Consensus 46 ~~~~~iLD~~sasG~r~iRya~E~~~~~V~~nDi~~~A~~~i~~N~~~N~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 125 (378) T 2dul_A 46 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 125 (378) T ss_dssp HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH T ss_pred HCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHH T ss_conf 29998999788722999999985899889999699899999999999708653343334332245543675211278898 Q ss_pred HHHHHCCCCEEEEEC-CCHHHHHHHHHHCCCCCCCCCE Q ss_conf 765312332478622-5207888765407344566410 Q gi|255764511|r 97 DYVPDKGVDGVVFDL-GVSSMQIDCGDRGFSFQKSGPL 133 (341) Q Consensus 97 ~~l~~~~vdgIl~DL-GvSS~Qld~~~RGFSf~~dgpL 133 (341) . -....+|.|-+|- |-+++-||.+-|.- +..|-| T Consensus 126 ~-~~~~~~DvIDiDPfGsp~pfldsA~~a~--~~gGll 160 (378) T 2dul_A 126 A-ERHRYFHFIDLDPFGSPMEFLDTALRSA--KRRGIL 160 (378) T ss_dssp H-HSTTCEEEEEECCSSCCHHHHHHHHHHE--EEEEEE T ss_pred H-HCCCCCCEECCCCCCCHHHHHHHHHHHH--CCCCEE T ss_conf 7-4478774331389998189999999970--558889 No 235 >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Probab=78.92 E-value=1.8 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=20.5 Q ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEC Q ss_conf 78999999885202445338998725 Q gi|255764511|r 226 EELAQGLRSAEKALKAGGLLIVVSFH 251 (341) Q Consensus 226 ~~L~~~L~~~~~~L~~gGrl~VISFH 251 (341) ++-...|..+.+.|+|||+++|+-+- T Consensus 263 ~~~~~iL~~~~~~L~pgG~lli~d~~ 288 (348) T 3lst_A 263 EDSVRILTNCRRVMPAHGRVLVIDAV 288 (348) T ss_dssp HHHHHHHHHHHHTCCTTCEEEEEECC T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEEE T ss_conf 99999999999966999889999860 No 236 >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* Probab=78.86 E-value=0.5 Score=25.89 Aligned_cols=88 Identities=20% Similarity=0.226 Sum_probs=54.8 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHHH Q ss_conf 0986886608388888998376882889999974--8909998099899999999852148-852771132788987653 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYVP 100 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l~ 100 (341) =|.|+++-+...+.+.+||.-.+.||-|...+.. ..+|+|+|.-...... .-..+.++ +.+.+.... ++ ..++ T Consensus 61 KL~~~~~~~~~~~~~~vvDlG~~~Ggwt~~~~~~~~v~~V~gvdvG~~~~~~-P~~~~~~g~nlv~~~~~~--dv-~~l~ 136 (269) T 2px2_A 61 KLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEE-PMLMQSYGWNIVTMKSGV--DV-FYKP 136 (269) T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCC-CCCCCSTTGGGEEEECSC--CG-GGSC T ss_pred HHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCCCC-CCCHHHHCCCEEEEEECC--CH-HHCC T ss_conf 9999998378565880898068898289999873377467999945776557-621132146504665500--02-1068 Q ss_pred HCCCCEEEEECCCHH Q ss_conf 123324786225207 Q gi|255764511|r 101 DKGVDGVVFDLGVSS 115 (341) Q Consensus 101 ~~~vdgIl~DLGvSS 115 (341) ...+|-|+-|.|-|| T Consensus 137 ~~~~D~vlcDi~esS 151 (269) T 2px2_A 137 SEISDTLLCDIGESS 151 (269) T ss_dssp CCCCSEEEECCCCCC T ss_pred CCCCCEEEECCCCCC T ss_conf 887898984687788 No 237 >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} Probab=78.36 E-value=2.3 Score=21.66 Aligned_cols=134 Identities=17% Similarity=0.104 Sum_probs=71.1 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC--CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH Q ss_conf 09868866083888889983768828899999748--9099980998999999998521488527711327889876531 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG--SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD 101 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~--~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~ 101 (341) =|.++.+-+...+.|.+||--.|.||-|....... ..+.|+|.--+-.. .....+.++-.+.-.....+ + .+++. T Consensus 62 KL~~~~e~~~~~~~g~vvDlg~~~Ggws~~~~~~~~v~~V~G~tlG~dghe-~P~~~~~~g~nii~~~~~~D-v-~~~~~ 138 (265) T 2oxt_A 62 KLAWMEERGYVELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHE-VPRITESYGWNIVKFKSRVD-I-HTLPV 138 (265) T ss_dssp HHHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCC-CCCCCCBTTGGGEEEECSCC-T-TTSCC T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEEEECCCCCC-CCCCCCCCCCCEEEEECCCC-E-EECCC T ss_conf 999999746766488288806788718999976337654677894577666-77322347865474442673-2-75599 Q ss_pred CCCCEEEEECCCHHHHHHHHH-HCCCCCCCCCEECCCC-----CCCCCHHHHHHHCCHHH---HHHHHHHHCC Q ss_conf 233247862252078887654-0734456641010435-----56841899986222578---9989997446 Q gi|255764511|r 102 KGVDGVVFDLGVSSMQIDCGD-RGFSFQKSGPLDMRMS-----CSGISASDVVNQANVKD---LTRILGILGE 165 (341) Q Consensus 102 ~~vdgIl~DLGvSS~Qld~~~-RGFSf~~dgpLDMRmd-----~~~~tA~eiln~~s~~~---L~~i~~~yGe 165 (341) ..+|-||.|.|.||..-+..+ |=. ..|+|-.+ |.+--...++.-|..+. |....+.||. T Consensus 139 ~~~DtvlcDigess~~~~ve~~Rtl-----~Vlel~~~wl~~~p~g~Fv~KVl~py~p~vie~L~~lqr~~gg 206 (265) T 2oxt_A 139 ERTDVIMCDVGESSPKWSVESERTI-----KILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKWGG 206 (265) T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHH-----HHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHHCC T ss_pred CCCCEEEECCCCCCCCCCCCCCHHH-----HHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 8688899678778997432210347-----9999999998268997399999158997899999999987099 No 238 >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, ATP-binding, capsid protein, cleavage on PAIR of basic residues; HET: GTA SAH; 1.45A {Yellow fever virus 17D} PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* Probab=77.78 E-value=0.34 Score=26.95 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=30.1 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH------CCEEEEECCC Q ss_conf 986886608388888998376882889999974------8909998099 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM------GSNVIALDRD 67 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~------~~~liaiDrD 67 (341) |.|+.+-...+|++.+||.=.|-||-|+...+. .+.++|+|.. T Consensus 63 L~eI~ek~~lkp~~~VVDLGaAPGGWSQvaa~~~~v~~~~G~vigvDl~ 111 (277) T 3evf_A 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGH 111 (277) T ss_dssp HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTC T ss_pred HHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCEEEEEECCC T ss_conf 9999980685779879992678868999999855546771399941287 No 239 >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A Probab=77.61 E-value=0.4 Score=26.49 Aligned_cols=76 Identities=7% Similarity=-0.114 Sum_probs=46.6 Q ss_pred HHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CCEEEECCCHHHHHHHH--HHCCCCEE Q ss_conf 6083888889983768828899999748909998099899999999852148-85277113278898765--31233247 Q gi|255764511|r 31 LLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQFSLFQATFSQLQDYV--PDKGVDGV 107 (341) Q Consensus 31 ~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r~~~~~~~F~~i~~~l--~~~~vdgI 107 (341) .+.|.|. -++-.-.|.||=.+.+|+...++...|.||+.+..|++.+..+. .|+.+....-. .++ ....+|.| T Consensus 68 ~~hp~pk-~VLiIGgG~G~~~re~lk~~~~v~~VEiD~~Vi~~a~~~fp~~~d~r~~~~~~D~~---~~l~~~~~~yDvI 143 (262) T 2cmg_A 68 CTKKELK-EVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK---QLLDLDIKKYDLI 143 (262) T ss_dssp TTSSCCC-EEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEES---SGGGSCCCCEEEE T ss_pred HCCCCCC-EEEEECCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCCCCCCCCHHHHHHH---HHHHHCCCCCCEE T ss_conf 5399867-79994599669999984589747999838999999998684223543360155799---9986154677889 Q ss_pred EEE Q ss_conf 862 Q gi|255764511|r 108 VFD 110 (341) Q Consensus 108 l~D 110 (341) +.| T Consensus 144 i~D 146 (262) T 2cmg_A 144 FCL 146 (262) T ss_dssp EES T ss_pred EEC T ss_conf 988 No 240 >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Probab=77.33 E-value=3.8 Score=20.18 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=52.3 Q ss_pred CCCEEEECCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CC Q ss_conf 888899837688288----99999748909998099899999999852148852771132788---9876531-----23 Q gi|255764511|r 36 PGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~ 103 (341) .|.+. =-|-|.+|= ++.+++.+.+|+..||+++.+....+.+++++.++.++..+.++ +...+.. .+ T Consensus 27 ~gKva-lITGas~GIG~aiA~~la~~Ga~Vv~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 105 (270) T 3ftp_A 27 DKQVA-IVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA 105 (270) T ss_dssp TTCEE-EETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC T ss_pred CCCEE-EEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 99989-99386858999999999986999999979889999999999965994699997369999999999999998399 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++-.-|+. T Consensus 106 iDiLVnnAg~~ 116 (270) T 3ftp_A 106 LNVLVNNAGIT 116 (270) T ss_dssp CCEEEECCCCC T ss_pred CEEEEECCCCC T ss_conf 61999878557 No 241 >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Probab=75.79 E-value=4.2 Score=19.92 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=50.2 Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC Q ss_conf 7688288----99999748909998099899999999852148852771132788---9876531-----2332478622 Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341) |-|.+|= ++.+++.+.+|+..||+++.++.+.+.++..+.++.++..+.++ +...... .++|..+-+- T Consensus 8 TGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnnA 87 (256) T 1geg_A 8 TGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVIVNNA 87 (256) T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEEEECC T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 16655899999999998799899997989999999999996399299999428999999999999999759997999899 Q ss_pred CCH Q ss_conf 520 Q gi|255764511|r 112 GVS 114 (341) Q Consensus 112 GvS 114 (341) |++ T Consensus 88 G~~ 90 (256) T 1geg_A 88 GVA 90 (256) T ss_dssp CCC T ss_pred CCC T ss_conf 889 No 242 >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str} Probab=75.28 E-value=4.3 Score=19.83 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=31.4 Q ss_pred CCCCCCCCHHHHHHHH---HCCCCCCEEEECCCCCCHHHHHHHH-H-CCEEE---E-E-CCCHHHHHHHHHHH Q ss_conf 6078334009868866---0838888899837688288999997-4-89099---9-8-09989999999985 Q gi|255764511|r 16 TIGDHVPVLLEKVIAL---LNPAPGKVILDATFGAGGYSRSFCK-M-GSNVI---A-L-DRDPFAVSCGQETM 78 (341) Q Consensus 16 ~~~~H~PVll~Evl~~---l~~~~~g~~iD~TlG~GGHS~~iL~-~-~~~li---a-i-DrD~~ai~~a~~~l 78 (341) +...=.+|+.+|+-+. ..+..|+++..+++-.. + +..|. + ..+|+ + + -.+.+.+...-..+ T Consensus 21 ~~~GLE~~la~El~~lg~~~~~~~g~V~f~g~~~~~-y-~~~l~sR~a~RVl~~l~~f~a~~~~~Ly~~~~~i 91 (393) T 3k0b_A 21 AASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAI-A-RANLWLRVADRVKIVVGVFKATTFDELFEKTKAL 91 (393) T ss_dssp CCTTCHHHHHHHHHHTTCCCEEETTEEEEEECHHHH-H-HHHHHCSSCSCEEEEEEEEECSSHHHHHHHHHTS T ss_pred ECCCHHHHHHHHHHHCCCCCEEECCEEEEEECHHHH-H-HHHHHCCCHHHHEEEEEEECCCCHHHHHHHHHCC T ss_conf 087559999999997389778950379999899999-9-9998521577518772231169999999998719 No 243 >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Probab=74.93 E-value=4.4 Score=19.78 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=53.1 Q ss_pred CCCE-EEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-C Q ss_conf 8888-998376882889----9999748909998099899999999852148852771132788---987653----1-2 Q gi|255764511|r 36 PGKV-ILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-K 102 (341) Q Consensus 36 ~~g~-~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~ 102 (341) .|.+ +| |=|.+|== +.+++.+.+|+..|||++.+..+.+.+++++.++..+..+.++ +...+. . . T Consensus 21 ~gKVAlV--TGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~G 98 (277) T 2rhc_B 21 DSEVALV--TGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277) T ss_dssp TSCEEEE--ETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC T ss_pred CCCEEEE--ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCC T ss_conf 9978999--27675999999999998799999997998999999999985399289999207999999999999999759 Q ss_pred CCCEEEEECCCH Q ss_conf 332478622520 Q gi|255764511|r 103 GVDGVVFDLGVS 114 (341) Q Consensus 103 ~vdgIl~DLGvS 114 (341) ++|.++-+-|+. T Consensus 99 ~iDiLVnnAG~~ 110 (277) T 2rhc_B 99 PVDVLVNNAGRP 110 (277) T ss_dssp SCSEEEECCCCC T ss_pred CCCEEEECCCCC T ss_conf 997999899999 No 244 >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A Probab=74.36 E-value=4.6 Score=19.69 Aligned_cols=61 Identities=23% Similarity=0.236 Sum_probs=39.5 Q ss_pred CCCCHH-HHHH----HHHCCCCCCEEEECCCCCCHHH--HHHHHH--CCEEEEECCCHHHHHHHHHHHHH Q ss_conf 334009-8688----6608388888998376882889--999974--89099980998999999998521 Q gi|255764511|r 20 HVPVLL-EKVI----ALLNPAPGKVILDATFGAGGYS--RSFCKM--GSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 20 H~PVll-~Evl----~~l~~~~~g~~iD~TlG~GGHS--~~iL~~--~~~liaiDrD~~ai~~a~~~l~~ 80 (341) -.||-| .|+. .++.-+..-..-|+-.|+|+-- ..+|.. .-+|+|-|.|++++..|.++|.- T Consensus 30 ~FPVRLAsEifqRal~~~~~~~p~tlwDPCCGsgYlLTvlgLLh~~~l~~v~aSDVd~~al~LA~~NL~L 99 (250) T 1o9g_A 30 AFPVRLATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLAL 99 (250) T ss_dssp CCCHHHHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 8518999999999998636888730430577720899999884305777777335887899998852211 No 245 >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Probab=69.87 E-value=5.8 Score=19.03 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=47.7 Q ss_pred CCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-C-CCCEEEE Q ss_conf 37688288----99999748909998099899999999852148852771132788---987653----1-2-3324786 Q gi|255764511|r 43 ATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-K-GVDGVVF 109 (341) Q Consensus 43 ~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~-~vdgIl~ 109 (341) -|=|.+|= ++.+++.+.+|+..||+++.+..+.+.++..+.++..+..+.++ +.+++. . . .+|.++- T Consensus 14 VTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~idilvn 93 (260) T 2ae2_A 14 VTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVN 93 (260) T ss_dssp EESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTCCCEEEE T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 94888889999999999869999999698899999999987249828999877899999999999999984999539998 Q ss_pred ECCCH Q ss_conf 22520 Q gi|255764511|r 110 DLGVS 114 (341) Q Consensus 110 DLGvS 114 (341) .-|+. T Consensus 94 nAG~~ 98 (260) T 2ae2_A 94 NAGIV 98 (260) T ss_dssp CCCCC T ss_pred CCCCC T ss_conf 99878 No 246 >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Probab=69.35 E-value=2.6 Score=21.26 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.8 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 89999998852024453389987255 Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHS 252 (341) Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHS 252 (341) ....+|..+..+|+|||+|.|...+| T Consensus 129 d~~~~l~E~~RvLkpgG~l~i~e~~~ 154 (215) T 2zfu_A 129 NIRDFLEEANRVLKPGGLLKVAEVSS 154 (215) T ss_dssp CHHHHHHHHHHHEEEEEEEEEEECGG T ss_pred CHHHHHHHHHHHCCCCEEEEEEEECC T ss_conf 98999999998538983999999410 No 247 >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransferase, viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* Probab=69.05 E-value=0.79 Score=24.62 Aligned_cols=43 Identities=14% Similarity=0.099 Sum_probs=34.3 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHC------CEEEEECC Q ss_conf 09868866083888889983768828899999748------90999809 Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMG------SNVIALDR 66 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~------~~liaiDr 66 (341) =|.|+.+-....|++.+||.=.|-||-|+.+.+.. +.++|+|. T Consensus 69 KL~ei~ek~~l~p~g~VVDLG~aPGGWSQvaa~~~~v~~v~G~vvGiDl 117 (300) T 3eld_A 69 KIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEG 117 (300) T ss_dssp HHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCC T ss_conf 9999997067045883898377896499999875376776069980456 No 248 >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* 3evg_A* Probab=68.87 E-value=3.3 Score=20.62 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=25.9 Q ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECC Q ss_conf 986886608388888998376882889999974--890999809 Q gi|255764511|r 25 LEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDR 66 (341) Q Consensus 25 l~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDr 66 (341) |.|+.+-+-.+|+|.+||-=.|-||-|...... ...+.|+|. T Consensus 71 L~ei~EK~~ikp~g~VVDLGcAPGGWSQvaa~~~~v~~V~G~~i 114 (305) T 2p41_A 71 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK 114 (305) T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC T ss_pred HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEEE T ss_conf 99999734757698688737689838999986226662168994 No 249 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Probab=68.66 E-value=4.7 Score=19.60 Aligned_cols=67 Identities=12% Similarity=0.155 Sum_probs=40.1 Q ss_pred HHHHHHHHHC-CEEEEE-CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC Q ss_conf 8899999748-909998-09989999999985214885277113278898765312332478622520788876540734 Q gi|255764511|r 49 GYSRSFCKMG-SNVIAL-DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFS 126 (341) Q Consensus 49 GHS~~iL~~~-~~liai-DrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFS 126 (341) .|..++.+.. -.|+|+ |+|++.. +.+...+.+ |.++++++....+|.|+.-.=.. .|++-...-.. T Consensus 24 ~h~~~~~~~~~~eiv~v~d~~~~~~-------~~~~~~~~~----~~~~~ell~~~~~D~V~I~tp~~-~H~~~~~~al~ 91 (315) T 3c1a_A 24 NYIRTIAGLPGAALVRLASSNPDNL-------ALVPPGCVI----ESDWRSVVSAPEVEAVIIATPPA-THAEITLAAIA 91 (315) T ss_dssp THHHHHHHCTTEEEEEEEESCHHHH-------TTCCTTCEE----ESSTHHHHTCTTCCEEEEESCGG-GHHHHHHHHHH T ss_pred HHHHHHHHCCCCEEEEEECCCHHHH-------HHHCCCCCC----CCCHHHHHCCCCCCEEEECCCHH-HHHHHHHHHHH T ss_conf 9999997189948999987999999-------975357973----59999995599999899928788-87999999996 Q ss_pred C Q ss_conf 4 Q gi|255764511|r 127 F 127 (341) Q Consensus 127 f 127 (341) . T Consensus 92 ~ 92 (315) T 3c1a_A 92 S 92 (315) T ss_dssp T T ss_pred H T ss_conf 1 No 250 >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} Probab=67.49 E-value=3 Score=20.90 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=49.7 Q ss_pred HHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHH--CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH----- Q ss_conf 0986886608388888998376882889999974--890999809989999999985214885277113278898----- Q gi|255764511|r 24 LLEKVIALLNPAPGKVILDATFGAGGYSRSFCKM--GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ----- 96 (341) Q Consensus 24 ll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~--~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~----- 96 (341) =|.|+.+-+...|.|.+||-=.|.||-|..-... ...|.|+|.--+ +.+-+..+.-+..|+-.+. T Consensus 82 KL~~i~Ek~~l~p~G~VVDLGcapGGWSqvAa~~~~v~~V~G~tlG~d--------~~e~P~~v~t~g~niv~~k~~~dv 153 (321) T 3lkz_A 82 KLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP--------GHEEPQLVQSYGWNIVTMKSGVDV 153 (321) T ss_dssp HHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST--------TSCCCCCCCBTTGGGEEEECSCCT T ss_pred HHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCCEEEEEECCC--------CCCCCCCCCCCCCCCCCHHHCCCE T ss_conf 999999805855088688747688718899875336663047994676--------553885320037773341111301 Q ss_pred HHHHHCCCCEEEEECCCHHHH Q ss_conf 765312332478622520788 Q gi|255764511|r 97 DYVPDKGVDGVVFDLGVSSMQ 117 (341) Q Consensus 97 ~~l~~~~vdgIl~DLGvSS~Q 117 (341) ..+.....|-||-|.|-||.. T Consensus 154 ~~~~~~~~DtvlcDigesS~~ 174 (321) T 3lkz_A 154 FYRPSECCDTLLCDIGESSSS 174 (321) T ss_dssp TSSCCCCCSEEEECCCCCCSC T ss_pred EECCCCCCCEEEECCCCCCCC T ss_conf 354789988898437677998 No 251 >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Probab=67.47 E-value=2.3 Score=21.56 Aligned_cols=73 Identities=11% Similarity=0.082 Sum_probs=43.4 Q ss_pred CCCCCCHHHHHHHHH---CCEEEEE-----CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 376882889999974---8909998-----09989999999985214885277113278898765312332478622520 Q gi|255764511|r 43 ATFGAGGYSRSFCKM---GSNVIAL-----DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 43 ~TlG~GGHS~~iL~~---~~~liai-----DrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) |-.|.|||....|+. ..++.++ |+|.+. +++..++|+-... -|+++++++....+|+|+. .-.- T Consensus 6 ~iiG~G~~~~~~l~~l~~~~~i~~v~~~~~~~~~~~---~~~~~~~~~~~~~----~y~~~~ell~~~~iD~V~i-~tp~ 77 (337) T 3ip3_A 6 CVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSK---LEKAISEMNIKPK----KYNNWWEMLEKEKPDILVI-NTVF 77 (337) T ss_dssp EEECSSSCHHHHHTTCCTTEEEEEEECSSTTCCCHH---HHHHHHTTTCCCE----ECSSHHHHHHHHCCSEEEE-CSSH T ss_pred EEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHH---HHHHHHHHCCCCE----EECCHHHHHCCCCCCEEEE-ECCC T ss_conf 999259999999997321699899995778858999---9999998499970----4099999964899888999-5886 Q ss_pred HHHHHHHHH Q ss_conf 788876540 Q gi|255764511|r 115 SMQIDCGDR 123 (341) Q Consensus 115 S~Qld~~~R 123 (341) ..|.+-... T Consensus 78 ~~H~~~~~~ 86 (337) T 3ip3_A 78 SLNGKILLE 86 (337) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 167999999 No 252 >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Probab=66.97 E-value=6.6 Score=18.65 Aligned_cols=81 Identities=12% Similarity=0.133 Sum_probs=50.7 Q ss_pred CCCCCEEEECCCCCCHHH--HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----HCCC Q ss_conf 388888998376882889--9999748909998099899999999852148852771132788---987653----1233 Q gi|255764511|r 34 PAPGKVILDATFGAGGYS--RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----DKGV 104 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS--~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~~~v 104 (341) ++..-++|=+--++=|.+ +.+.+.+.+|+..||+++.+....+.+++.+.++.++....++ +..+.. ..++ T Consensus 5 ~knk~vlITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 84 (252) T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL 84 (252) T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCE T ss_conf 99998999758558999999999987999999989999999999999963983999977768999999888777642750 Q ss_pred CEEEEECCCH Q ss_conf 2478622520 Q gi|255764511|r 105 DGVVFDLGVS 114 (341) Q Consensus 105 dgIl~DLGvS 114 (341) |.++..-|.+ T Consensus 85 d~lv~nag~~ 94 (252) T 3h7a_A 85 EVTIFNVGAN 94 (252) T ss_dssp EEEEECCCCC T ss_pred EEEECCCEEC T ss_conf 1230143215 No 253 >2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=66.14 E-value=2.9 Score=20.92 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.3 Q ss_pred HHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 999998852024453389987255 Q gi|255764511|r 229 AQGLRSAEKALKAGGLLIVVSFHS 252 (341) Q Consensus 229 ~~~L~~~~~~L~~gGrl~VISFHS 252 (341) ..+|..+.++|||||++++-.+.. T Consensus 84 ~~~l~e~~rvLKPgG~~~~~~~~~ 107 (182) T 2yui_A 84 AEILAEIARILRPGGCLFLKEPVE 107 (182) T ss_dssp HHHHHHHHHHBCTTSCCEEEEEEC T ss_pred HHHHHHHHHHHCCCEEEEEEECCC T ss_conf 999999999706886999983265 No 254 >3ndi_A Methyltransferase; S-adenosylmethionine, kijanose, tetronitrose, tetradeoxysuga micromonospora chalcea, TCAB9, SUGA methylation; HET: SAM TMP; 1.50A {Micromonospora chalcea} PDB: 3ndj_A* Probab=66.04 E-value=6.9 Score=18.53 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=47.7 Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHH Q ss_conf 60783340098688660838888899837688288999997489099980998999999998 Q gi|255764511|r 16 TIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSNVIALDRDPFAVSCGQET 77 (341) Q Consensus 16 ~~~~H~PVll~Evl~~l~~~~~g~~iD~TlG~GGHS~~iL~~~~~liaiDrD~~ai~~a~~~ 77 (341) ++..|.--+.+.+++.....+++.++|---|.|.--..+-+.+.+++|+|-.+.....+.+. T Consensus 87 ~~~~~~~~~~~~l~~~~~~~~~~~ileIG~~dG~lL~~~~~~~~~~~Gidps~~~~~~~~~~ 148 (416) T 3ndi_A 87 VMREHFAMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK 148 (416) T ss_dssp HHHHHHHHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECSCHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHCCC T ss_conf 99999999999999874347787799835888705443342035324422562034443035 No 255 >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Probab=62.94 E-value=7.6 Score=18.24 Aligned_cols=64 Identities=22% Similarity=0.214 Sum_probs=41.1 Q ss_pred CCCCCHHH-HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-CCCCEEEEECCCH Q ss_conf 76882889-99997489099980998999999998521488527711327889876531-2332478622520 Q gi|255764511|r 44 TFGAGGYS-RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGVS 114 (341) Q Consensus 44 TlG~GGHS-~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~-~~vdgIl~DLGvS 114 (341) |=+-|.+. +.+++++-+|+++.|+++. +.....++.++..+..+.+.+... .++|.|+.-+|.+ T Consensus 13 tG~iG~~l~~~Ll~~g~~V~~l~R~~~~-------~~~~~~~~~~i~~D~~d~~~l~~~~~~~d~vi~~~~~~ 78 (227) T 3dhn_A 13 SGFVGSALLNEALNRGFEVTAVVRHPEK-------IKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPG 78 (227) T ss_dssp CHHHHHHHHHHHHTTTCEEEEECSCGGG-------CCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC- T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCHHH-------CCCCCCCEEEEECCCCCHHHHHHHHCCCCCCEEECCCC T ss_conf 9889999999999784989999868476-------22246623776135554666898860775110341455 No 256 >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Probab=62.80 E-value=7 Score=18.48 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=50.6 Q ss_pred CHHHHHHHHHCCCCCCEEEECCCCCCHHHHH---HHHH---CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH Q ss_conf 0098688660838888899837688288999---9974---890999809989999999985214885277113278898 Q gi|255764511|r 23 VLLEKVIALLNPAPGKVILDATFGAGGYSRS---FCKM---GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ 96 (341) Q Consensus 23 Vll~Evl~~l~~~~~g~~iD~TlG~GGHS~~---iL~~---~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~ 96 (341) +++.|.|.-+. | .++|-.=.+.||=+.. +++. .++++|+|.|+...... ....+++.++.++..+.. T Consensus 71 ~~~qeli~~~K--P-k~ILEIG~~~GgS~~~~a~~l~~~~~~~~I~~iDId~~~~~~~----~~~~~~I~~~~gds~d~~ 143 (236) T 2bm8_A 71 AVYHDMLWELR--P-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP----ASDMENITLHQGDCSDLT 143 (236) T ss_dssp HHHHHHHHHHC--C-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC----GGGCTTEEEEECCSSCSG T ss_pred HHHHHHHHHHC--C-CEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH----HCCCCCCEEEEECCCCHH T ss_conf 99999999859--7-9899973880825999999997457884599733665665544----314666379992252188 Q ss_pred --HHHHHCCCCEEEEECCCH Q ss_conf --765312332478622520 Q gi|255764511|r 97 --DYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 97 --~~l~~~~vdgIl~DLGvS 114 (341) +.+.....+-|+.|=+=+ T Consensus 144 ~~~~l~~~~~dlIfID~~H~ 163 (236) T 2bm8_A 144 TFEHLREMAHPLIFIDNAHA 163 (236) T ss_dssp GGGGGSSSCSSEEEEESSCS T ss_pred HHHHHHHHCCCEEEEECCCC T ss_conf 99999975586899938873 No 257 >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} Probab=61.71 E-value=8.2 Score=18.02 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=45.1 Q ss_pred HHHHHHHHHCC--EEEEE-CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHH----H Q ss_conf 88999997489--09998-09989999999985214885277113278898765312332478622520788876----5 Q gi|255764511|r 49 GYSRSFCKMGS--NVIAL-DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC----G 121 (341) Q Consensus 49 GHS~~iL~~~~--~liai-DrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~----~ 121 (341) .|...+++..+ +|+|+ |+|++......+ +|+-... .|+++.+.+....+|+|+.=. ....|++- - T Consensus 37 ~h~~~~~~~~~~~~lvav~d~~~~~a~~~a~---~~~~~~~----~y~~~~ell~~~~iDaV~I~T-p~~~H~~~~~~al 108 (357) T 3ec7_A 37 DHLRRLANTVSGVEVVAVCDIVAGRAQAALD---KYAIEAK----DYNDYHDLINDKDVEVVIITA-SNEAHADVAVAAL 108 (357) T ss_dssp HHHHHHHHTCTTEEEEEEECSSTTHHHHHHH---HHTCCCE----EESSHHHHHHCTTCCEEEECS-CGGGHHHHHHHHH T ss_pred HHHHHHHHCCCCCEEEEEECCCHHHHHHHHH---HHCCCCC----CCCCHHHHHCCCCCCEEEECC-CCCCCHHHHHHHH T ss_conf 9999998469997899997899999999999---8399983----119999996599988899889-8500004578898 Q ss_pred HHCCCCCCCCCEE Q ss_conf 4073445664101 Q gi|255764511|r 122 DRGFSFQKSGPLD 134 (341) Q Consensus 122 ~RGFSf~~dgpLD 134 (341) +.|.-.--+-||- T Consensus 109 ~~GkhVl~EKPla 121 (357) T 3ec7_A 109 NANKYVFCEKPLA 121 (357) T ss_dssp HTTCEEEEESSSC T ss_pred HCCCEEEECCCCH T ss_conf 5177699758813 No 258 >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Probab=61.63 E-value=8.3 Score=18.02 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=39.6 Q ss_pred H-HHHHHHHCCEEEEECCCHHHHHHHH-----HHHHHCCCCEEEECCCHH---HHHHHHHHCCCCEEEEECCCHH Q ss_conf 8-9999974890999809989999999-----985214885277113278---8987653123324786225207 Q gi|255764511|r 50 Y-SRSFCKMGSNVIALDRDPFAVSCGQ-----ETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 50 H-S~~iL~~~~~liaiDrD~~ai~~a~-----~~l~~~~~r~~~~~~~F~---~i~~~l~~~~vdgIl~DLGvSS 115 (341) | .+.+++++..|+|+||.+.+..... ........++.++..+.. .+.+++...++|.|+-=-|.++ T Consensus 16 ~L~~~Ll~~g~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~D~ViHlAa~~~ 90 (372) T 1db3_A 16 YLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSH 90 (372) T ss_dssp HHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSEEEECCCCCT T ss_pred HHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEECCHHHH T ss_conf 999999978598999978986556566888875032048975999854789899999986149979998411311 No 259 >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Probab=61.04 E-value=8.5 Score=17.95 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=50.6 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHH----HC-- Q ss_conf 8888998376882889----999974890999809989999999985214885277113278---8987653----12-- Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVP----DK-- 102 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~---~i~~~l~----~~-- 102 (341) .|.+.| -|=|.+|== +.+++.+.+|+..|++++.++.+.+.++..+.++.++..+.+ ++.+.+. .. T Consensus 20 ~GK~al-ITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~G 98 (273) T 1ae1_A 20 KGTTAL-VTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 98 (273) T ss_dssp TTCEEE-EESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC T ss_conf 999899-9288869999999999987999999979989999999999832995489982589999999999999998289 Q ss_pred CCCEEEEECCC Q ss_conf 33247862252 Q gi|255764511|r 103 GVDGVVFDLGV 113 (341) Q Consensus 103 ~vdgIl~DLGv 113 (341) .+|.++-.-|+ T Consensus 99 ~idiLVnnAG~ 109 (273) T 1ae1_A 99 KLNILVNNAGV 109 (273) T ss_dssp CCCEEEECCCC T ss_pred CCCEEEECCCC T ss_conf 98499989987 No 260 >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Probab=59.70 E-value=8.9 Score=17.80 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=45.3 Q ss_pred CCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHH---HHH----H-CCCCEEEEE Q ss_conf 37688288----99999748909998099899999999852148852771132788987---653----1-233247862 Q gi|255764511|r 43 ATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQD---YVP----D-KGVDGVVFD 110 (341) Q Consensus 43 ~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~---~l~----~-~~vdgIl~D 110 (341) -|-|.+|= ++.+++.+.+|+..||+++.+.... +++++++.++....++.+. .+. . ..+|.++-+ T Consensus 10 ITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~---~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLvnN 86 (281) T 3m1a_A 10 VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLV---AAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVLVNN 86 (281) T ss_dssp ETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHH---HHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEEC T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 9088869999999999987999999989999999999---9768957999973799999999999999982998499988 Q ss_pred CCCH Q ss_conf 2520 Q gi|255764511|r 111 LGVS 114 (341) Q Consensus 111 LGvS 114 (341) -|+. T Consensus 87 AG~~ 90 (281) T 3m1a_A 87 AGRT 90 (281) T ss_dssp CCCE T ss_pred CCCC T ss_conf 9788 No 261 >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 Probab=59.35 E-value=9 Score=17.76 Aligned_cols=29 Identities=7% Similarity=0.151 Sum_probs=15.2 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 578998999744630268899999999752 Q gi|255764511|r 153 VKDLTRILGILGEEKQASRIAHAIVKRRQS 182 (341) Q Consensus 153 ~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~ 182 (341) .+++.++.....|+. |++.-.+++.+|-. T Consensus 171 ~~~~~~~~~~L~D~~-Sr~~~~~~L~~rl~ 199 (409) T 2py6_A 171 IPAFQTLAQRLADDY-SVQTLYAVLNFHLT 199 (409) T ss_dssp HHHHHHHHHHCSSHH-HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHH-HHHHHHHHHHHHHC T ss_conf 999999998744387-89999999999872 No 262 >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Probab=59.22 E-value=9.1 Score=17.75 Aligned_cols=80 Identities=23% Similarity=0.237 Sum_probs=54.4 Q ss_pred CCCCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH----- Q ss_conf 388888998376882889----9999748909998099899999999852148852771132788---9876531----- Q gi|255764511|r 34 PAPGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD----- 101 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~----- 101 (341) +.+|.+.| -|=|.+|== +.+++.+.+|+..||+++.++.+.+.+...+.++..+..+.++ +.+.+.. T Consensus 11 ~L~gKval-VTGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (260) T 2zat_A 11 PLENKVAL-VTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLH 89 (260) T ss_dssp TTTTCEEE-ESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH T ss_pred CCCCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 88999799-92778789999999999879999999798899999999988349836899765799999999999999980 Q ss_pred CCCCEEEEECCCH Q ss_conf 2332478622520 Q gi|255764511|r 102 KGVDGVVFDLGVS 114 (341) Q Consensus 102 ~~vdgIl~DLGvS 114 (341) .++|.++.+-|+. T Consensus 90 G~iDiLVnnAG~~ 102 (260) T 2zat_A 90 GGVDILVSNAAVN 102 (260) T ss_dssp SCCCEEEECCCCC T ss_pred CCCCEEEECCCCC T ss_conf 9971999898555 No 263 >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Probab=58.41 E-value=9.4 Score=17.66 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=53.3 Q ss_pred CCCEEEECCCCCCHHHHHH----HHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHH----H-CC Q ss_conf 8888998376882889999----97489099980998999999998521488527711327889---87653----1-23 Q gi|255764511|r 36 PGKVILDATFGAGGYSRSF----CKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVP----D-KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~i----L~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~----~-~~ 103 (341) .|.+ +=-|-|.+|==+++ ++.+.+|+..||+++.+..+.+.+++++.+..++..+.++- ...+. . .. T Consensus 43 enKv-alITGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvtd~~~v~~~~~~~~~~~G~ 121 (285) T 2c07_A 43 ENKV-ALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 121 (285) T ss_dssp SSCE-EEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC T ss_pred CCCE-EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 9978-999088878999999999986999999979999999999999963994899983489999999999999997299 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++-.-|+. T Consensus 122 iDiLVnNAG~~ 132 (285) T 2c07_A 122 VDILVNNAGIT 132 (285) T ss_dssp CCEEEECCCCC T ss_pred CEEEEECCCCC T ss_conf 70999899766 No 264 >2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus HB8} SCOP: a.60.2.7 Probab=57.69 E-value=1.4 Score=22.95 Aligned_cols=38 Identities=29% Similarity=0.555 Sum_probs=30.3 Q ss_pred HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 86222578998999744630268899999999752124321379999 Q gi|255764511|r 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 (341) Q Consensus 148 ln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~i 194 (341) ||+.+.++|..+- | -...+|++|+++| +|.+-.||.++ T Consensus 21 iN~As~~eL~~lp---G---ig~~~A~~Iv~~R---~f~s~~dL~~v 58 (75) T 2duy_A 21 LNEASLEELMALP---G---IGPVLARRIVEGR---PYARVEDLLKV 58 (75) T ss_dssp TTTCCHHHHTTST---T---CCHHHHHHHHHTC---CCSSGGGGGGS T ss_pred CCCCCHHHHHHCC---C---CCHHHHHHHHHCC---CCCCHHHHHHC T ss_conf 7128799997778---9---8999999999858---98989999757 No 265 >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Probab=54.83 E-value=11 Score=17.28 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=43.2 Q ss_pred CEEEECCCCC-CHH-HHHHHHHCCEEEEECCCHHHHHHHHHHHHH--CCCCEEEECCCHHH---HHHHHHHCCCCEEEEE Q ss_conf 8899837688-288-999997489099980998999999998521--48852771132788---9876531233247862 Q gi|255764511|r 38 KVILDATFGA-GGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQATFSQ---LQDYVPDKGVDGVVFD 110 (341) Q Consensus 38 g~~iD~TlG~-GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~F~~---i~~~l~~~~vdgIl~D 110 (341) .++|=|--|. |.| .+.+|+++-+|+|+||+..+... .++.. ..+++.++..+..+ +...+....+++++.- T Consensus 16 ~vLITGatGfIGs~l~~~Ll~~g~~V~~i~r~~~~~~~--~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~ 93 (335) T 1rpn_A 16 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL 93 (335) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCH--HHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCCC T ss_conf 49997588789999999999784989999899976517--7798733368948998215672321000223332222222 Q ss_pred CCCHHHHHH Q ss_conf 252078887 Q gi|255764511|r 111 LGVSSMQID 119 (341) Q Consensus 111 LGvSS~Qld 119 (341) .+.++.+.. T Consensus 94 a~~~~~~~~ 102 (335) T 1rpn_A 94 AAQSFVGAS 102 (335) T ss_dssp CSCCCHHHH T ss_pred CCCCCCCCC T ss_conf 222223222 No 266 >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Probab=54.75 E-value=11 Score=17.28 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=42.3 Q ss_pred HHHHHHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHH---HHHHHHHCCCCEEEEECCCHHH--HHHHHHHCC Q ss_conf 999974890999809989999999985214-8852771132788---9876531233247862252078--887654073 Q gi|255764511|r 52 RSFCKMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQ---LQDYVPDKGVDGVVFDLGVSSM--QIDCGDRGF 125 (341) Q Consensus 52 ~~iL~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~---i~~~l~~~~vdgIl~DLGvSS~--Qld~~~RGF 125 (341) +.+|+.+..|+|+|+-..+........+.+ ..++.+++.+..+ +.+.+...++|.|+-==++++. -.+++...+ T Consensus 18 ~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~ 97 (338) T 1udb_A 18 VQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYY 97 (338) T ss_dssp HHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHH T ss_pred HHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCHHHHH T ss_conf 99997849899997888763556677886157887699801789899999997569989998987666165676989999 Q ss_pred CCCCC Q ss_conf 44566 Q gi|255764511|r 126 SFQKS 130 (341) Q Consensus 126 Sf~~d 130 (341) --+.. T Consensus 98 ~~Nv~ 102 (338) T 1udb_A 98 DNNVN 102 (338) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 267 >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genomics, NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus VF5} PDB: 2z95_A* Probab=54.29 E-value=11 Score=17.23 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=44.3 Q ss_pred EEEECCCCCCH-H-HHHHHHHCCEEEEECCCHHHHHHHHHHHH--HCCCCEEEECCCHHH---HHHHHHHCCCCEEEEEC Q ss_conf 89983768828-8-99999748909998099899999999852--148852771132788---98765312332478622 Q gi|255764511|r 39 VILDATFGAGG-Y-SRSFCKMGSNVIALDRDPFAVSCGQETMR--DYKEQFSLFQATFSQ---LQDYVPDKGVDGVVFDL 111 (341) Q Consensus 39 ~~iD~TlG~GG-H-S~~iL~~~~~liaiDrD~~ai~~a~~~l~--~~~~r~~~~~~~F~~---i~~~l~~~~vdgIl~DL 111 (341) ++|=|--|.=| | .+.+|+++..|+|+|+.+...... ++. ....++.++..+..+ +...+...++|.|+.=. T Consensus 6 ilVTG~tGfIGs~lv~~Ll~~g~~V~~~dr~~~~~~~~--~~~~~~~~~~~~~v~~Di~d~~~~~~~~~~~~~d~V~hlA 83 (345) T 2z1m_A 6 ALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASW--RLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLA 83 (345) T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTH--HHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEECC T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHH--HHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECC T ss_conf 99989987899999999997839899998999764345--5887432689779980367857724556237971999735 Q ss_pred CCHHH Q ss_conf 52078 Q gi|255764511|r 112 GVSSM 116 (341) Q Consensus 112 GvSS~ 116 (341) ++++. T Consensus 84 a~~~~ 88 (345) T 2z1m_A 84 AQSFV 88 (345) T ss_dssp CCCCH T ss_pred CCCCC T ss_conf 33761 No 268 >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Probab=54.18 E-value=11 Score=17.22 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=46.6 Q ss_pred CCCCCCHHHH-HHHH---HC--CEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 3768828899-9997---48--90999-8099899999999852148852771132788987653123324786225207 Q gi|255764511|r 43 ATFGAGGYSR-SFCK---MG--SNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 43 ~TlG~GGHS~-~iL~---~~--~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS 115 (341) +-.|.|+-.. .++. .. .+|+| .|+|++..+...+....-..++. .|+++++++....+|.|+.-.--. T Consensus 87 ~iiG~G~~g~~~~~~~~~~~~~~~lvav~d~~~~~a~~~~~~~~~~~~~~~----~~~~~~~ll~~~~iD~V~i~tp~~- 161 (433) T 1h6d_A 87 AIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY----DYSNFDKIAKDPKIDAVYIILPNS- 161 (433) T ss_dssp EEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEE----CSSSGGGGGGCTTCCEEEECSCGG- T ss_pred EEEECHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCCCCCCC----CCCCHHHHHCCCCCCEEEEECCHH- T ss_conf 999081999999999997299978999992999999999997199834466----768999995699987899909879- Q ss_pred HHH----HHHHHCCCCCCCCCEEC Q ss_conf 888----76540734456641010 Q gi|255764511|r 116 MQI----DCGDRGFSFQKSGPLDM 135 (341) Q Consensus 116 ~Ql----d~~~RGFSf~~dgpLDM 135 (341) .|. +--+.|--.--+-|+-+ T Consensus 162 ~H~~~~~~al~aGkhv~~EKP~a~ 185 (433) T 1h6d_A 162 LHAEFAIRAFKAGKHVMCEKPMAT 185 (433) T ss_dssp GHHHHHHHHHHTTCEEEECSSCCS T ss_pred HHHHHHHHHHHCCCEEEEECCCCC T ss_conf 999999999987991999578412 No 269 >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum 3D7} Probab=53.52 E-value=11 Score=17.15 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=32.3 Q ss_pred HHHHHHHHCC-CCCCEEEECCCCCCHHHHHHHHHC----CEEEEECCCH Q ss_conf 9868866083-888889983768828899999748----9099980998 Q gi|255764511|r 25 LEKVIALLNP-APGKVILDATFGAGGYSRSFCKMG----SNVIALDRDP 68 (341) Q Consensus 25 l~Evl~~l~~-~~~g~~iD~TlG~GGHS~~iL~~~----~~liaiDrD~ 68 (341) |.|+.+-+.. +++..++|.=-+-||-++.+.+.. +.++++|..+ T Consensus 10 L~eI~~~~~l~~~~~~vvDLg~aPGgw~q~~~~~~~~~~~~~~~~~~~~ 58 (201) T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201) T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCCC T ss_conf 9999998382579987999478997799999998417888378613433 No 270 >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Probab=53.39 E-value=10 Score=17.44 Aligned_cols=78 Identities=10% Similarity=0.171 Sum_probs=46.6 Q ss_pred HHHHHHHH----HCCEEEEE-CCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHH- Q ss_conf 88999997----48909998-0998999999998521488527711327889876531233247862252078887654- Q gi|255764511|r 49 GYSRSFCK----MGSNVIAL-DRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGD- 122 (341) Q Consensus 49 GHS~~iL~----~~~~liai-DrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~- 122 (341) +|...++. .+..|+|+ |+|++......+. |+. . ..|+++++++....||+|+.=. -.+.|.+-.. T Consensus 15 ~~~~~~~~~~~~~~~elvav~d~~~~~~~~~~~~---~~~-~----~~~~~~~ell~~~~iDaV~I~t-p~~~H~~~~~~ 85 (336) T 2p2s_A 15 NHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSL---FPS-V----PFAASAEQLITDASIDLIACAV-IPCDRAELALR 85 (336) T ss_dssp THHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHH---STT-C----CBCSCHHHHHTCTTCCEEEECS-CGGGHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH---CCC-C----CEECCHHHHHCCCCCCEEEEEC-CHHHHHHHHHH T ss_conf 9999999886508978999989999999999987---799-8----3789999995599989999968-82778999999 Q ss_pred ---HCCCCCCCCCEEC Q ss_conf ---0734456641010 Q gi|255764511|r 123 ---RGFSFQKSGPLDM 135 (341) Q Consensus 123 ---RGFSf~~dgpLDM 135 (341) .|.-.--+-||-+ T Consensus 86 al~~gk~Vl~EKPla~ 101 (336) T 2p2s_A 86 TLDAGKDFFTAKPPLT 101 (336) T ss_dssp HHHTTCEEEECSSCCS T ss_pred HHHCCCEEEECCCCCC T ss_conf 9985990896278532 No 271 >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Probab=52.01 E-value=12 Score=17.00 Aligned_cols=71 Identities=14% Similarity=0.210 Sum_probs=50.7 Q ss_pred CCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC Q ss_conf 7688288999----99748909998099899999999852148852771132788---9876531-----2332478622 Q gi|255764511|r 44 TFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341) |-|.+|==++ +++.+.+|+..||+++.++.+.+.+++++.++.++..+..+ +.+++.. .++|.++.+- T Consensus 11 TGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 90 (247) T 3lyl_A 11 TGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAIDILVNNA 90 (247) T ss_dssp SSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCCSEEEECC T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 28886899999999998699999997988999999999985499589999107999999999999999729976999877 Q ss_pred CCH Q ss_conf 520 Q gi|255764511|r 112 GVS 114 (341) Q Consensus 112 GvS 114 (341) |+. T Consensus 91 g~~ 93 (247) T 3lyl_A 91 GIT 93 (247) T ss_dssp CCC T ss_pred CCC T ss_conf 457 No 272 >3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens} Probab=51.11 E-value=7 Score=18.49 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.3 Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 999862225789989997446302688999 Q gi|255764511|r 145 SDVVNQANVKDLTRILGILGEEKQASRIAH 174 (341) Q Consensus 145 ~eiln~~s~~~L~~i~~~yGee~~a~~IA~ 174 (341) ..-|..-++..+.+++.+||++.-|||||= T Consensus 66 DldLqkdD~~~r~~Li~KfGa~nVArRiaF 95 (111) T 3k6g_A 66 DIDLQKDDEDTREALVKKFGAQNVARRIEF 95 (111) T ss_dssp HHHHTCCCHHHHHHHHHHHCHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHCCHHHHHHHHH T ss_conf 687763899999999999750436777553 No 273 >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Probab=50.73 E-value=12 Score=16.87 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=51.6 Q ss_pred CCCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEE Q ss_conf 37688288999----99748909998099899999999852148852771132788---9876531-----233247862 Q gi|255764511|r 43 ATFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFD 110 (341) Q Consensus 43 ~TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~D 110 (341) -|-|.+|=-.+ +++.+.+|+..||+++.+....+.+++++.++.++..+.++ +.+.+.. ..+|.++-+ T Consensus 16 ITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn 95 (255) T 1fmc_A 16 ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNN 95 (255) T ss_dssp ETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEEC T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 93897589999999999879989999799899999999999639938999922899999999999999974999899989 Q ss_pred CCCH Q ss_conf 2520 Q gi|255764511|r 111 LGVS 114 (341) Q Consensus 111 LGvS 114 (341) -|++ T Consensus 96 AG~~ 99 (255) T 1fmc_A 96 AGGG 99 (255) T ss_dssp CCCC T ss_pred CCCC T ss_conf 9999 No 274 >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Probab=50.70 E-value=12 Score=16.87 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=53.3 Q ss_pred CCCE-EEECCCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----C Q ss_conf 8888-9983768828899----999748909998099899999999852148852771132788---9876531-----2 Q gi|255764511|r 36 PGKV-ILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----K 102 (341) Q Consensus 36 ~~g~-~iD~TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~ 102 (341) +|.+ +| |-|.+|==+ .+++.+.+|+..|++++.++...+.+++++.++.++..+.++ +.+++.. . T Consensus 11 ~gKvalI--TGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 88 (256) T 3gaf_A 11 NDAVAIV--TGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFG 88 (256) T ss_dssp TTCEEEE--CSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS T ss_pred CCCEEEE--ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 9998999--48676899999999998799999997988999999999996499389998018999999999999999749 Q ss_pred CCCEEEEECCCH Q ss_conf 332478622520 Q gi|255764511|r 103 GVDGVVFDLGVS 114 (341) Q Consensus 103 ~vdgIl~DLGvS 114 (341) ++|.++-.=|+. T Consensus 89 ~iDiLVnnAG~~ 100 (256) T 3gaf_A 89 KITVLVNNAGGG 100 (256) T ss_dssp CCCEEEECCCCC T ss_pred CCCEEEECCCCC T ss_conf 998999899999 No 275 >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Probab=49.40 E-value=12 Score=16.88 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=44.5 Q ss_pred HHHCCC-CCCEEEECCCCCCH-H-HHHHHHHCCEEEEECCCHHHHHH------HHHHHHHCCCCEEEECCCH---HHHHH Q ss_conf 660838-88889983768828-8-99999748909998099899999------9998521488527711327---88987 Q gi|255764511|r 30 ALLNPA-PGKVILDATFGAGG-Y-SRSFCKMGSNVIALDRDPFAVSC------GQETMRDYKEQFSLFQATF---SQLQD 97 (341) Q Consensus 30 ~~l~~~-~~g~~iD~TlG~GG-H-S~~iL~~~~~liaiDrD~~ai~~------a~~~l~~~~~r~~~~~~~F---~~i~~ 97 (341) .++... +.-++|=+--|.=| | ++.+|+++..|+|+||..++... .+.......+++.++.++. +.+.. T Consensus 17 ~~~~~~Mkk~~LITGatGfIGs~l~~~Ll~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~ 96 (375) T 1t2a_A 17 KYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVK 96 (375) T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHH T ss_pred HHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCHHHHCCCCCEEEECCCCCHHHHHH T ss_conf 02440798769996086289999999999784989999798755551238887546465424780899841578688788 Q ss_pred HHHHCCCCEEEEECCCH Q ss_conf 65312332478622520 Q gi|255764511|r 98 YVPDKGVDGVVFDLGVS 114 (341) Q Consensus 98 ~l~~~~vdgIl~DLGvS 114 (341) .+...+.+.|+.=.+.+ T Consensus 97 ~~~~~~~~~v~~~aa~~ 113 (375) T 1t2a_A 97 IINEVKPTEIYNLGAQS 113 (375) T ss_dssp HHHHHCCSEEEECCSCC T ss_pred HHHHCCCCCEEEECCCC T ss_conf 88623874013200125 No 276 >3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901} Probab=49.34 E-value=13 Score=16.73 Aligned_cols=68 Identities=7% Similarity=0.114 Sum_probs=47.9 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH----HHHHHHHHHCC Q ss_conf 890999809989999999985214885277113278898765312332478622520----78887654073 Q gi|255764511|r 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS----SMQIDCGDRGF 125 (341) Q Consensus 58 ~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS----S~Qld~~~RGF 125 (341) +-+|.-+|-|+.........|+.++-.+....+.-..+..+.....+|.|++|+.+. -.++-..-|.+ T Consensus 5 ~~rILiVDD~~~~~~~l~~~L~~~g~~v~~a~~g~eAl~~l~~~~~~dlillD~~mp~g~dG~e~~~~ir~~ 76 (140) T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI 76 (140) T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHC T ss_conf 999999959899999999999987999999898999999998469998999726653357899999999856 No 277 >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Probab=47.90 E-value=14 Score=16.59 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=42.9 Q ss_pred EECCCCCCHH-HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHH-CCCCEEEEECCC Q ss_conf 9837688288-999997489099980998999999998521488527711327889876531-233247862252 Q gi|255764511|r 41 LDATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPD-KGVDGVVFDLGV 113 (341) Q Consensus 41 iD~TlG~GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~-~~vdgIl~DLGv 113 (341) +=||-+-|.| .+.+|+++-+|+++.||+.. ........+.++..++.+-+.+... .++|.|+.-+|. T Consensus 9 ~GatG~iG~~l~~~ll~~g~~V~~~~R~~~~------~~~~~~~~~~~v~~D~~d~~~l~~a~~~~d~Vi~~~g~ 77 (206) T 1hdo_A 9 FGATGQTGLTTLAQAVQAGYEVTVLVRDSSR------LPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (206) T ss_dssp ESTTSHHHHHHHHHHHHTTCEEEEEESCGGG------SCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHH------CCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEECC T ss_conf 9998689999999999786989999848365------65433566158960243367899997699799997136 No 278 >3cxt_A Dehydrogenase with different specificities; rossman fold, oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis} PDB: 3cxr_A* Probab=47.55 E-value=14 Score=16.55 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=53.9 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CC Q ss_conf 8888998376882889----9999748909998099899999999852148852771132788---987653----1-23 Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~ 103 (341) .|.+.| -|=|.+|== +.+.+.+.+|+..|++++.++.+.+.++..+.++.++..+.++ +.+.+. . .+ T Consensus 33 ~gK~al-VTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 111 (291) T 3cxt_A 33 KGKIAL-VTGASYGIGFAIASAYAKAGATIVFNDINQELVDRGMAAYKAAGINAHGYVCDVTDEDGIQAMVAQIESEVGI 111 (291) T ss_dssp TTCEEE-EETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTCC T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC T ss_conf 998799-9287859999999999987998999979999999999999854995899996289999999999999997699 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++-.-|+. T Consensus 112 iDilVnnAG~~ 122 (291) T 3cxt_A 112 IDILVNNAGII 122 (291) T ss_dssp CCEEEECCCCC T ss_pred CCEEEECCCCC T ss_conf 86899899989 No 279 >2b4a_A BH3024; 10175646, structural genomics, joint center for structural genomics, JCSG, protein structure initiative PSI, unknown function; 2.42A {Bacillus halodurans c-125} SCOP: c.23.1.1 Probab=45.69 E-value=15 Score=16.37 Aligned_cols=65 Identities=9% Similarity=0.010 Sum_probs=49.7 Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC---HHHHHHHHHH Q ss_conf 9099980998999999998521488527711327889876531233247862252---0788876540 Q gi|255764511|r 59 SNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV---SSMQIDCGDR 123 (341) Q Consensus 59 ~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv---SS~Qld~~~R 123 (341) -+|.-+|=|+.........|+..+-.+....+...-+..+.....+|-|+.|++. |-.++-..=| T Consensus 16 ~rILvVDDd~~~~~~l~~~L~~~G~~v~~~~~g~~al~~l~~~~~~DlvilD~~lP~~dG~~l~~~ir 83 (138) T 2b4a_A 16 FRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVK 83 (138) T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHT T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH T ss_conf 88999969999999999999985997998099999999998369998899858889988899999999 No 280 >2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Probab=45.65 E-value=15 Score=16.37 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=12.1 Q ss_pred HHHHHHHCCHHHHHHHHHHH Q ss_conf 89998622257899899974 Q gi|255764511|r 144 ASDVVNQANVKDLTRILGIL 163 (341) Q Consensus 144 A~eiln~~s~~~L~~i~~~y 163 (341) ..++.+..+.+.++.++-+. T Consensus 514 ~~~v~~~~D~ea~~~llar~ 533 (769) T 2nut_A 514 IQNIAASFDQEAAAILMARL 533 (769) T ss_dssp HHHHHHTBCHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHH T ss_conf 99999724999999999999 No 281 >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=44.74 E-value=15 Score=16.28 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=49.7 Q ss_pred CCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHC---CCCEEEECCCHHH---HHHHHHH-----CCCCEE Q ss_conf 37688288----9999974890999809989999999985214---8852771132788---9876531-----233247 Q gi|255764511|r 43 ATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQATFSQ---LQDYVPD-----KGVDGV 107 (341) Q Consensus 43 ~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~---~~r~~~~~~~F~~---i~~~l~~-----~~vdgI 107 (341) -|=|.+|= ++.+++.+.+|+..||+++.++.+.+.+.+. +.++.++..+.++ +.+.+.. ..+|.+ T Consensus 11 ITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDil 90 (280) T 1xkq_A 11 ITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVL 90 (280) T ss_dssp ETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 93768699999999999879989999898899999999999658888857999902899999999999999975999799 Q ss_pred EEECCCHH Q ss_conf 86225207 Q gi|255764511|r 108 VFDLGVSS 115 (341) Q Consensus 108 l~DLGvSS 115 (341) +-.-|++. T Consensus 91 VnnAG~~~ 98 (280) T 1xkq_A 91 VNNAGAAI 98 (280) T ss_dssp EECCCCCC T ss_pred EECCCCCC T ss_conf 98998788 No 282 >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Probab=44.28 E-value=16 Score=16.23 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=50.6 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CC Q ss_conf 8888998376882889----9999748909998099899999999852148852771132788---9876531-----23 Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~ 103 (341) .|.+.| -|=|.+|== +.+++.+.+|+..||+++.++.+.+.+...+ ++..+..+.++ +++.... .. T Consensus 28 ~gKval-VTGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 105 (276) T 2b4q_A 28 AGRIAL-VTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGELSAR 105 (276) T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHHHCSC T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHHHHHCCC T ss_conf 998799-92888789999999999869989999798899999999975049-8799990289999999999999997399 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++..-|+. T Consensus 106 iD~lVnnAG~~ 116 (276) T 2b4q_A 106 LDILVNNAGTS 116 (276) T ss_dssp CSEEEECCCCC T ss_pred CCEEEECCCCC T ss_conf 61999899668 No 283 >2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus} Probab=42.97 E-value=16 Score=16.10 Aligned_cols=66 Identities=9% Similarity=-0.018 Sum_probs=47.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH---HHHHHHHHHC Q ss_conf 890999809989999999985214885277113278898765312332478622520---7888765407 Q gi|255764511|r 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS---SMQIDCGDRG 124 (341) Q Consensus 58 ~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS---S~Qld~~~RG 124 (341) .++|+-+|-|+.........|+.++-++....+.-.-+ +.+....+|.|++|+.+. -.++-..=|. T Consensus 1 a~rILiVdd~~~~~~~~~~~L~~~g~~v~~a~~~~~al-~~l~~~~pdlvllD~~lp~~~G~~l~~~lr~ 69 (119) T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTAL-DQLDLLQPIVILMAWPPPDQSCLLLLQHLRE 69 (119) T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHH-HHHHHHCCSEEEEECSTTCCTHHHHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHH-HHHHHCCCCEEEEECCCCCCCHHHHHHHHHH T ss_conf 99899997999999999999998899999989999999-9998179998999637999999999999982 No 284 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* Probab=42.52 E-value=17 Score=16.06 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=41.4 Q ss_pred CCCHHHH--HHHHHC--CEEEEECCCHHHHHHHHHHHH---------H---CCCCEEEECCCHHHHHHHHH----HCCCC Q ss_conf 8828899--999748--909998099899999999852---------1---48852771132788987653----12332 Q gi|255764511|r 46 GAGGYSR--SFCKMG--SNVIALDRDPFAVSCGQETMR---------D---YKEQFSLFQATFSQLQDYVP----DKGVD 105 (341) Q Consensus 46 G~GGHS~--~iL~~~--~~liaiDrD~~ai~~a~~~l~---------~---~~~r~~~~~~~F~~i~~~l~----~~~vd 105 (341) |.=|.|. ++.+.+ .+|+|+|+|++.+..|.+.-- + +..-+.++...-..+.+++. ..+-+ T Consensus 42 G~mG~siA~~L~~~g~~~~V~g~D~~~~~~~~a~~~g~id~~~~~~~~~~~~~~dlIilavP~~~~~~vl~~l~~~l~~~ 121 (314) T 3ggo_A 42 GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLSYILSED 121 (314) T ss_dssp SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHHHHHHHHHSCTT T ss_pred CHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCC T ss_conf 88999999999806999889999799999999998699751148988872568888998355043210455431110345 Q ss_pred EEEEECCCHH Q ss_conf 4786225207 Q gi|255764511|r 106 GVVFDLGVSS 115 (341) Q Consensus 106 gIl~DLGvSS 115 (341) .++.|.|-.- T Consensus 122 ~iI~Dv~SvK 131 (314) T 3ggo_A 122 ATVTDQGSVK 131 (314) T ss_dssp CEEEECCSCC T ss_pred CCCCCCCCCC T ss_conf 5445645541 No 285 >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Probab=41.76 E-value=17 Score=15.98 Aligned_cols=31 Identities=10% Similarity=0.219 Sum_probs=22.4 Q ss_pred HHHHHHHHCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 8999997489099980998999999998521 Q gi|255764511|r 50 YSRSFCKMGSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 50 HS~~iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341) =+..++..+-.|+-+|++++++..+.++++. T Consensus 30 iA~~~a~~G~~V~l~D~~~e~l~~~~~~i~~ 60 (302) T 1f0y_A 30 IAQVAAATGHTVVLVDQTEDILAKSKKGIEE 60 (302) T ss_dssp HHHHHHHTTCEEEEECSCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 9999995899879998987899999999999 No 286 >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Probab=41.41 E-value=17 Score=15.95 Aligned_cols=78 Identities=17% Similarity=0.265 Sum_probs=50.2 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH---HHHHHHH----- Q ss_conf 8888998376882889----999974890999809989999999985214--8852771132788---9876531----- Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ---LQDYVPD----- 101 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~---i~~~l~~----- 101 (341) +|.+.| -|-|.+|== +.+++.+.+|+..||+++.+..+.+.++.. ..++.++..+.++ +...+.. T Consensus 31 kgKval-ITGas~GIG~aiA~~la~~Ga~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 109 (279) T 1xg5_A 31 RDRLAL-VTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 109 (279) T ss_dssp TTCEEE-EESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC T ss_conf 998899-9277878999999999987999999979889999999999856999519999745899999999999999973 Q ss_pred CCCCEEEEECCCH Q ss_conf 2332478622520 Q gi|255764511|r 102 KGVDGVVFDLGVS 114 (341) Q Consensus 102 ~~vdgIl~DLGvS 114 (341) ..+|.++-+-|+. T Consensus 110 g~iDiLVnnAG~~ 122 (279) T 1xg5_A 110 SGVDICINNAGLA 122 (279) T ss_dssp CCCSEEEECCCCC T ss_pred CCCCEEEECCCCC T ss_conf 9975899888779 No 287 >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Probab=40.71 E-value=18 Score=15.88 Aligned_cols=75 Identities=27% Similarity=0.359 Sum_probs=48.2 Q ss_pred CCCEEEECCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CC Q ss_conf 888899837688288----99999748909998099899999999852148852771132788---9876531-----23 Q gi|255764511|r 36 PGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~ 103 (341) +|.+.| -|=|.+|= ++.+++.+.+|+..||+++.++...+.+ +.+..++..+.++ +...... .+ T Consensus 8 ~gK~al-VTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 83 (261) T 3n74_A 8 EGKVAL-ITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAALSKFGK 83 (261) T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHSC T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHHHHHHHHHHHHHHHCC T ss_conf 999899-9388878999999999987998999989999999999983---896799996279999999999999998099 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++..-|+. T Consensus 84 iD~lVnnAG~~ 94 (261) T 3n74_A 84 VDILVNNAGIG 94 (261) T ss_dssp CCEEEECCCCC T ss_pred CEEEEECCCCC T ss_conf 70999898545 No 288 >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Probab=40.54 E-value=18 Score=15.86 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=42.6 Q ss_pred HHHHHHHH-CCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHH----HHHH Q ss_conf 89999974-890999-80998999999998521488527711327889876531233247862252078887----6540 Q gi|255764511|r 50 YSRSFCKM-GSNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID----CGDR 123 (341) Q Consensus 50 HS~~iL~~-~~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld----~~~R 123 (341) |..++... +-.|+| .|+|++..+... +.|+. .. -|+++.+++....+|+|+.= --...|.+ -.++ T Consensus 21 h~~~l~~~~~~~lvav~d~~~~~~~~~a---~~~~~-~~----~~~~~~~ll~~~~iD~V~I~-tp~~~H~~~~~~al~~ 91 (359) T 3m2t_A 21 LLPSLLQMQDIRIVAACDSDLERARRVH---RFISD-IP----VLDNVPAMLNQVPLDAVVMA-GPPQLHFEMGLLAMSK 91 (359) T ss_dssp HHHHHHTCTTEEEEEEECSSHHHHGGGG---GTSCS-CC----EESSHHHHHHHSCCSEEEEC-SCHHHHHHHHHHHHHT T ss_pred HHHHHHHCCCCEEEEEECCCHHHHHHHH---HHCCC-CC----EECCHHHHHCCCCCCEEEEC-CCHHHHHHHHHHHHHC T ss_conf 9999983999589999889999999999---88499-85----31899999659999989987-8635435899999843 Q ss_pred CCCCCCCCCEE Q ss_conf 73445664101 Q gi|255764511|r 124 GFSFQKSGPLD 134 (341) Q Consensus 124 GFSf~~dgpLD 134 (341) |-..--+-|+- T Consensus 92 Gk~V~~EKP~a 102 (359) T 3m2t_A 92 GVNVFVEKPPC 102 (359) T ss_dssp TCEEEECSCSC T ss_pred CCEEEEEECCC T ss_conf 98099985330 No 289 >2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A* Probab=40.54 E-value=18 Score=15.86 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=22.5 Q ss_pred HHHHH--HHHHCCEEEEECCCHHHHHHHHHHHH Q ss_conf 88999--99748909998099899999999852 Q gi|255764511|r 49 GYSRS--FCKMGSNVIALDRDPFAVSCGQETMR 79 (341) Q Consensus 49 GHS~~--iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341) |++-+ ++..+-.|+-+|++++++..+.++.+ T Consensus 18 G~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~ 50 (319) T 2dpo_A 18 GRSWAMLFASGGFRVKLYDIEPRQITGALENIR 50 (319) T ss_dssp HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH T ss_conf 999999999689928999799899999999999 No 290 >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: NAP; 2.07A {Thermotoga maritima MSB8} SCOP: c.2.1.2 Probab=40.39 E-value=18 Score=15.85 Aligned_cols=89 Identities=20% Similarity=0.343 Sum_probs=54.2 Q ss_pred CCCCCHHHHHHHHHCCCCCCE-EEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHH-HHHCCCCEEEECCCH Q ss_conf 833400986886608388888-998376882889----99997489099980998999999998-521488527711327 Q gi|255764511|r 19 DHVPVLLEKVIALLNPAPGKV-ILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQET-MRDYKEQFSLFQATF 92 (341) Q Consensus 19 ~H~PVll~Evl~~l~~~~~g~-~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~-l~~~~~r~~~~~~~F 92 (341) .|.-+|-+ .++. .|.+ +| |=|.+|== +.+++.+.+|+..|++++.+..+.+. .+.++.++.++..+. T Consensus 8 ~~~~~M~~----lf~L-~gKvalI--TGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dv 80 (267) T 1vl8_A 8 HHHHHMKE----VFDL-RGRVALV--TGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDV 80 (267) T ss_dssp -------------CCC-TTCEEEE--ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCT T ss_pred CCHHHCCC----CCCC-CCCEEEE--ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 12354051----6288-9998999--489878999999999987998999979889999999999997099579999348 Q ss_pred HHHH---HHHH----H-CCCCEEEEECCCH Q ss_conf 8898---7653----1-2332478622520 Q gi|255764511|r 93 SQLQ---DYVP----D-KGVDGVVFDLGVS 114 (341) Q Consensus 93 ~~i~---~~l~----~-~~vdgIl~DLGvS 114 (341) ++-+ +.+. . .++|.++-.-|+. T Consensus 81 ~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 110 (267) T 1vl8_A 81 SNYEEVKKLLEAVKEKFGKLDTVVNAAGIN 110 (267) T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCC T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 999999999999999759998999899989 No 291 >2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20 Probab=39.97 E-value=18 Score=15.81 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=49.9 Q ss_pred HHCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCCCHHHHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHHCC Q ss_conf 62225789989997446302-6889999999975212432137999999----887643127712578888887665134 Q gi|255764511|r 149 NQANVKDLTRILGILGEEKQ-ASRIAHAIVKRRQSAPFQTTQDLSSLIQ----KTVYFSKNNRIHPATRSFQALRIFVNN 223 (341) Q Consensus 149 n~~s~~~L~~i~~~yGee~~-a~~IA~~Iv~~R~~~~i~TT~eL~~iI~----~~~~~~~~~k~hpatr~FQALRI~VN~ 223 (341) |..+-.-|..|-..|++... -++||+-|......-+..|..+|++-.. ..+++.++-+. .-|+.+|+++-+ T Consensus 2 ~~m~~~~l~~I~~~~~~Lt~~E~~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~Rf~kklGf----~gf~efk~~l~~ 77 (111) T 2o3f_A 2 NAMATGGLAIIQSMXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGL----KGFQDLXMRVAG 77 (111) T ss_dssp --CCCCHHHHHHHHGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTC----SSHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCC----CCHHHHHHHHHH T ss_conf 7201679999998634179999999999995924764378999998979898799999999277----989999999999 Q ss_pred CHH Q ss_conf 057 Q gi|255764511|r 224 EIE 226 (341) Q Consensus 224 El~ 226 (341) |+. T Consensus 78 ~~~ 80 (111) T 2o3f_A 78 DLA 80 (111) T ss_dssp HHH T ss_pred HHH T ss_conf 975 No 292 >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Probab=39.63 E-value=18 Score=15.77 Aligned_cols=61 Identities=13% Similarity=0.264 Sum_probs=38.2 Q ss_pred CCCCH----HHHHHHHHCC--EEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 68828----8999997489--0999-80998999999998521488527711327889876531233247862252 Q gi|255764511|r 45 FGAGG----YSRSFCKMGS--NVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 45 lG~GG----HS~~iL~~~~--~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341) .|.|. |...++...+ .++| .|+|+++.+.+.+. |+.. ..|.++++++....+|+|+.---- T Consensus 14 IG~G~~g~~~~~~~~~~~~~~~l~~i~d~~~~~~~~~~~~---~~~~-----~~~~~~~~ll~~~~vD~v~I~tp~ 81 (346) T 3cea_A 14 IGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE---LGVE-----TTYTNYKDMIDTENIDAIFIVAPT 81 (346) T ss_dssp ECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT---TCCS-----EEESCHHHHHTTSCCSEEEECSCG T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH---CCCC-----CCCCCHHHHHCCCCCCEEEEECHH T ss_conf 9884999999999985499968999987999999999998---2998-----515999999648998889995717 No 293 >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Probab=38.87 E-value=19 Score=15.70 Aligned_cols=75 Identities=20% Similarity=0.300 Sum_probs=46.7 Q ss_pred EEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHH-HHHHHHCCCCEEEECCCHHHH---HHHHH----H-CCCCE Q ss_conf 998376882889----99997489099980998999999-998521488527711327889---87653----1-23324 Q gi|255764511|r 40 ILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCG-QETMRDYKEQFSLFQATFSQL---QDYVP----D-KGVDG 106 (341) Q Consensus 40 ~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a-~~~l~~~~~r~~~~~~~F~~i---~~~l~----~-~~vdg 106 (341) .+=-|=|.+|== +.+++.+.+|+..|++++....+ .+..++++.++.++..+.++- .+... . .++|. T Consensus 16 ~alVTGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi 95 (265) T 1h5q_A 16 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISG 95 (265) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCSEEE T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCE T ss_conf 79992888789999999999879989999797788999999999970995799990189999999999999997299989 Q ss_pred EEEECCCH Q ss_conf 78622520 Q gi|255764511|r 107 VVFDLGVS 114 (341) Q Consensus 107 Il~DLGvS 114 (341) ++-.-|++ T Consensus 96 lVnnAG~~ 103 (265) T 1h5q_A 96 LIANAGVS 103 (265) T ss_dssp EEECCCCC T ss_pred EEECCCCC T ss_conf 99899889 No 294 >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Probab=38.76 E-value=19 Score=15.69 Aligned_cols=68 Identities=18% Similarity=0.156 Sum_probs=42.8 Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEEC Q ss_conf 7688288----999997489099980998999999998521488527711327889---876531-----2332478622 Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~DL 111 (341) |=|.+|= ++.+++.+.+|+..|++++.++...+.+ +++..++..+.++. .+++.. .++|.++-+- T Consensus 13 TGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~el---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idilvnnA 89 (260) T 1nff_A 13 SGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---ADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVLVNNA 89 (260) T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---GGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 488878999999999987999999979889999999985---18717999847999999999999999749998999899 Q ss_pred CCH Q ss_conf 520 Q gi|255764511|r 112 GVS 114 (341) Q Consensus 112 GvS 114 (341) |+. T Consensus 90 G~~ 92 (260) T 1nff_A 90 GIL 92 (260) T ss_dssp CCC T ss_pred CCC T ss_conf 999 No 295 >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Probab=37.83 E-value=20 Score=15.59 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=49.0 Q ss_pred CCCCCHH----HHHHHHH-CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH-----HCCCCEEEEE Q ss_conf 7688288----9999974-890999809989999999985214885277113278898---7653-----1233247862 Q gi|255764511|r 44 TFGAGGY----SRSFCKM-GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP-----DKGVDGVVFD 110 (341) Q Consensus 44 TlG~GGH----S~~iL~~-~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~-----~~~vdgIl~D 110 (341) |-|..|= ++.+++. +.+|+..+|+++..+.+.+.++..+.+..++....++.+ .... ..++|.++-+ T Consensus 10 TGas~GIG~a~A~~la~~~g~~Vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iDiLVnN 89 (276) T 1wma_A 10 TGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNN 89 (276) T ss_dssp SSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEEC T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 77887899999999998189989999799899999999998559957999932899999999999999972997789976 Q ss_pred CCCHH Q ss_conf 25207 Q gi|255764511|r 111 LGVSS 115 (341) Q Consensus 111 LGvSS 115 (341) =|+.. T Consensus 90 AGi~~ 94 (276) T 1wma_A 90 AGIAF 94 (276) T ss_dssp CCCCC T ss_pred CCCCC T ss_conf 72367 No 296 >1xhl_A Short-chain dehydrogenase/reductase family member (5L265), putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=37.54 E-value=20 Score=15.56 Aligned_cols=93 Identities=18% Similarity=0.210 Sum_probs=56.5 Q ss_pred CCCCHHHHHHHHHCCCCCCEEEECCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHC---CCCEEEECCCH Q ss_conf 3340098688660838888899837688288----9999974890999809989999999985214---88527711327 Q gi|255764511|r 20 HVPVLLEKVIALLNPAPGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQATF 92 (341) Q Consensus 20 H~PVll~Evl~~l~~~~~g~~iD~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~---~~r~~~~~~~F 92 (341) |-|=|...--. ..-..|.+ +=-|=|.+|= ++.+++.+.+|+..||+++.+..+.+.+.+. ..++..+..+. T Consensus 10 ~~~g~~~rg~~-M~rL~GKv-alVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~g~~~~~v~~~~~Dv 87 (297) T 1xhl_A 10 HSSGLVPRGSH-MARFSGKS-VIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 87 (297) T ss_dssp --------------CCTTCE-EEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCT T ss_pred CCCCCCCCCCC-CCCCCCCE-EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEEC T ss_conf 46788869898-88889988-99947786899999999998799899998999999999999997489876368998008 Q ss_pred HH---HHHHHHH-----CCCCEEEEECCCH Q ss_conf 88---9876531-----2332478622520 Q gi|255764511|r 93 SQ---LQDYVPD-----KGVDGVVFDLGVS 114 (341) Q Consensus 93 ~~---i~~~l~~-----~~vdgIl~DLGvS 114 (341) ++ +..++.. .++|.++-+-|++ T Consensus 88 s~~~~v~~~~~~~~~~~G~iDiLVnnAG~~ 117 (297) T 1xhl_A 88 TEASGQDDIINTTLAKFGKIDILVNNAGAN 117 (297) T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCC T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 999999999999999829987899888656 No 297 >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Probab=37.03 E-value=3.5 Score=20.47 Aligned_cols=39 Identities=26% Similarity=0.450 Sum_probs=29.3 Q ss_pred HHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 986222578998999744630268899999999752124321379999 Q gi|255764511|r 147 VVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 (341) Q Consensus 147 iln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~i 194 (341) =||+.+.++|..+ .-. ...+|++||++ +|+.+..||.++ T Consensus 56 dlN~A~~~eL~~l-pGi-----g~~~A~~Iv~~---gpf~svedl~~v 94 (134) T 1s5l_U 56 DLNNTNIAAFIQY-RGL-----YPTLAKLIVKN---APYESVEDVLNI 94 (134) T ss_dssp ETTTSCGGGGGGS-TTC-----THHHHHHHHHT---CCCSSGGGGGGC T ss_pred ECCCCCHHHHHHH-HHH-----HHHHHHHHHHC---CCCCCHHHHHCC T ss_conf 1640789999771-034-----69999999982---784879999617 No 298 >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Probab=35.75 E-value=21 Score=15.38 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=51.1 Q ss_pred CCCE-EEECCCCCC---HH--HHHHHHHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEECCCHHH---HHHHHHH---- Q ss_conf 8888-998376882---88--9999974890999809989999999985214-8852771132788---9876531---- Q gi|255764511|r 36 PGKV-ILDATFGAG---GY--SRSFCKMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLFQATFSQ---LQDYVPD---- 101 (341) Q Consensus 36 ~~g~-~iD~TlG~G---GH--S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~~~~F~~---i~~~l~~---- 101 (341) .|.+ +| |-|.| |. ++.+++.+.+|+..|++++.+..+.+.+.+. ..++.++..+.++ ++..... T Consensus 21 ~gKvalI--TGasg~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 98 (266) T 3o38_A 21 KGKVVLV--TAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK 98 (266) T ss_dssp TTCEEEE--SSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH T ss_pred CCCEEEE--ECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 9997999--49997489999999999879989999798899999999998517984899991589999999999999998 Q ss_pred -CCCCEEEEECCCHH Q ss_conf -23324786225207 Q gi|255764511|r 102 -KGVDGVVFDLGVSS 115 (341) Q Consensus 102 -~~vdgIl~DLGvSS 115 (341) .++|.++-+-|+.. T Consensus 99 ~g~iDilVnnAG~~~ 113 (266) T 3o38_A 99 AGRLDVLVNNAGLGG 113 (266) T ss_dssp HSCCCEEEECCCCCC T ss_pred HCCCCEEEECCCCCC T ss_conf 099859998998899 No 299 >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Probab=35.74 E-value=21 Score=15.38 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=48.6 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----H-CC Q ss_conf 8888998376882889----9999748909998099899999999852148852771132788---987653----1-23 Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----D-KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~-~~ 103 (341) +|.+. =-|=|.+|== +.+++.+.+|+..|++++.++.+.+.+.. .+++.++..+.++ +...+. . .. T Consensus 15 ~gKva-lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 92 (278) T 2bgk_A 15 QDKVA-IITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-PDVISFVHCDVTKDEDVRNLVDTTIAKHGK 92 (278) T ss_dssp TTCEE-EEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC T ss_pred CCCEE-EEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHHHHHCC T ss_conf 99989-9948687899999999998799899997988999999998358-996799985789999999999999998299 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++..-|+. T Consensus 93 iDilVnnAG~~ 103 (278) T 2bgk_A 93 LDIMFGNVGVL 103 (278) T ss_dssp CCEEEECCCCC T ss_pred CCEEECCCCCC T ss_conf 88740156536 No 300 >3bz1_U Photosystem II 12 kDa extrinsic protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 2axt_U* 3bz2_U* 3kzi_U* 3a0b_U* 3a0h_U* Probab=34.99 E-value=4.5 Score=19.73 Aligned_cols=38 Identities=26% Similarity=0.487 Sum_probs=28.7 Q ss_pred HHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 86222578998999744630268899999999752124321379999 Q gi|255764511|r 148 VNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSL 194 (341) Q Consensus 148 ln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~i 194 (341) ||+.+..+|..+ .-. ...+|++||++ +||.+..||.++ T Consensus 27 lN~As~~eL~~l-pGi-----g~~~A~~Iv~~---gpf~s~~dL~~V 64 (104) T 3bz1_U 27 LNNTNIAAFIQY-RGL-----YPTLAKLIVKN---APYESVEDVLNI 64 (104) T ss_dssp TTSSCGGGGGGS-TTT-----THHHHHHHHHS---CCCSSGGGGGGC T ss_pred CCCCCHHHHHHC-CCC-----CHHHHHHHHHC---CCCCCHHHHHCC T ss_conf 840899999658-997-----99999999974---997989999638 No 301 >2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1 Probab=34.78 E-value=22 Score=15.29 Aligned_cols=27 Identities=22% Similarity=0.594 Sum_probs=21.8 Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 688999999997521243213799999 Q gi|255764511|r 169 ASRIAHAIVKRRQSAPFQTTQDLSSLI 195 (341) Q Consensus 169 a~~IA~~Iv~~R~~~~i~TT~eL~~iI 195 (341) -++.+..|+.+|++++|++=.||.+-| T Consensus 141 GKK~~~~IleeR~k~~FeSFedi~~Rv 167 (205) T 2i5h_A 141 GKKMMWAIIEERKKRPFESFEDIAQRV 167 (205) T ss_dssp CHHHHHHHHHHHHHSCCCSHHHHHHHS T ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 589999999996558988999999884 No 302 >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1G07440, reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Probab=34.35 E-value=22 Score=15.24 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=51.1 Q ss_pred CCCEEEECCCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHH----HH--C Q ss_conf 88889983768828899----999748909998099899999999852148852771132788---98765----31--2 Q gi|255764511|r 36 PGKVILDATFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYV----PD--K 102 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l----~~--~ 102 (341) .|.+.| -|=|.+|=-+ .+++.+.+|+..||+++.+..+.+.+.....++.++..+.++ +..++ .. . T Consensus 13 ~gK~al-ITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 91 (266) T 1xq1_A 13 KAKTVL-VTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 91 (266) T ss_dssp TTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC T ss_conf 999899-9279868999999999987999999979999999999998732980899985689999999999999998299 Q ss_pred CCCEEEEECCCH Q ss_conf 332478622520 Q gi|255764511|r 103 GVDGVVFDLGVS 114 (341) Q Consensus 103 ~vdgIl~DLGvS 114 (341) .+|.++..-|+. T Consensus 92 ~id~lvnnAG~~ 103 (266) T 1xq1_A 92 KLDILINNLGAI 103 (266) T ss_dssp CCSEEEEECCC- T ss_pred CCEEEEECCCCC T ss_conf 970999899878 No 303 >3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A Probab=34.35 E-value=22 Score=15.24 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=40.2 Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 899986222578998999744630268899999999752124321379999998876 Q gi|255764511|r 144 ASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVY 200 (341) Q Consensus 144 A~eiln~~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~~~i~TT~eL~~iI~~~~~ 200 (341) .-+-+|.+++++....|..-.+-+.| |..++..| ||.+..+|......++. T Consensus 26 ~L~~~N~l~~~ea~~~l~~~~~~~~W---a~~~~~~R---PF~s~~~L~~a~~~~~~ 76 (189) T 3o7i_A 26 ALSQFNSLSKDEAAGLLAPCVALPAW---GETLVSLR---PFASRHALLQTAREAMA 76 (189) T ss_dssp CHHHHHHSCHHHHHHHHGGGCSCHHH---HHHHHHTC---CCSCHHHHHHHHHHHHH T ss_pred CHHHHHCCCHHHHHHHHHHHHCCHHH---HHHHHHCC---CCCCHHHHHHHHHHHHH T ss_conf 49988678999999999999678899---99999769---99999999999999998 No 304 >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Probab=34.29 E-value=22 Score=15.24 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=49.1 Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHC---CCCEEEECCCHHH---HHHHHHH-----CCCCEE Q ss_conf 376882889----999974890999809989999999985214---8852771132788---9876531-----233247 Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQATFSQ---LQDYVPD-----KGVDGV 107 (341) Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~---~~r~~~~~~~F~~---i~~~l~~-----~~vdgI 107 (341) -|=|.+|== +.+++.+.+|+..||+++.++.+.+.+... ..++..+..+.++ +.+.+.. .++|.+ T Consensus 11 VTGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL 90 (278) T 1spx_A 11 ITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDIL 90 (278) T ss_dssp ETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 94858789999999999879989999798899999999999657877765799855799999999999999981999889 Q ss_pred EEECCCHH Q ss_conf 86225207 Q gi|255764511|r 108 VFDLGVSS 115 (341) Q Consensus 108 l~DLGvSS 115 (341) +-.-|+.. T Consensus 91 VnnAG~~~ 98 (278) T 1spx_A 91 VNNAGAAI 98 (278) T ss_dssp EECCC--- T ss_pred EECCCCCC T ss_conf 98998678 No 305 >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Probab=33.89 E-value=23 Score=15.19 Aligned_cols=72 Identities=18% Similarity=0.128 Sum_probs=46.1 Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHH--CCCCEEEECCC---HHHHHHHHHH-----CCCCEEE Q ss_conf 376882889----99997489099980998999999998521--48852771132---7889876531-----2332478 Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRD--YKEQFSLFQAT---FSQLQDYVPD-----KGVDGVV 108 (341) Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~--~~~r~~~~~~~---F~~i~~~l~~-----~~vdgIl 108 (341) -|-|.+|== +.+++.+.+|+..|++++.+..+.+.++. .+.++.++..+ .+++...... ..+|.++ T Consensus 13 ITGas~GIG~a~a~~la~~Ga~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~G~iDiLv 92 (319) T 3ioy_A 13 VTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFGPVSILC 92 (319) T ss_dssp EETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTCCEEEEE T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 92888789999999999879989999898899999999998407898089997668999999999999999749977899 Q ss_pred EECCCH Q ss_conf 622520 Q gi|255764511|r 109 FDLGVS 114 (341) Q Consensus 109 ~DLGvS 114 (341) -+=|++ T Consensus 93 nNAGi~ 98 (319) T 3ioy_A 93 NNAGVN 98 (319) T ss_dssp ECCCCC T ss_pred ECCCCC T ss_conf 878646 No 306 >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Probab=33.50 E-value=23 Score=15.15 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=23.9 Q ss_pred HHHHH--HHHHCCEEEEECCCHHHHHHHHHHHHH Q ss_conf 88999--997489099980998999999998521 Q gi|255764511|r 49 GYSRS--FCKMGSNVIALDRDPFAVSCGQETMRD 80 (341) Q Consensus 49 GHS~~--iL~~~~~liaiDrD~~ai~~a~~~l~~ 80 (341) |+.-+ ++..+..|+-+|.|++++..+.++++. T Consensus 17 G~~IA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~ 50 (483) T 3mog_A 17 GAGIAEVAASHGHQVLLYDISAEALTRAIDGIHA 50 (483) T ss_dssp HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH T ss_conf 9999999995899689997999999999999999 No 307 >3lls_A 3-ketoacyl-(acyl-carrier-protein) reductase; niaid, emerald biostructures, UW, SBRI, oxidoreductase, structural genomics; 2.40A {Mycobacterium tuberculosis} Probab=33.44 E-value=7.8 Score=18.17 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=5.3 Q ss_pred HCCEEEEECCCH Q ss_conf 489099980998 Q gi|255764511|r 57 MGSNVIALDRDP 68 (341) Q Consensus 57 ~~~~liaiDrD~ 68 (341) .+.+|+..|+++ T Consensus 257 ~GA~Vvi~dr~~ 268 (475) T 3lls_A 257 DGAHVVAIDVES 268 (475) T ss_dssp TTCEEEEEECGG T ss_pred CCCEEEEEECCH T ss_conf 699899995966 No 308 >3cg0_A Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor; signal receiver domain; 2.15A {Desulfovibrio desulfuricans subsp} Probab=33.42 E-value=23 Score=15.15 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=43.4 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 89099980998999999998521488527711327889876531233247862252 Q gi|255764511|r 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 58 ~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341) .++|.-+|-|+......+..|+.++-.+.-...+-.+..+.+....+|.|+.|+.. T Consensus 9 ~~~ILvVDD~~~~~~~l~~~L~~~G~~v~~~a~~~~eal~~~~~~~~dlvi~D~~m 64 (140) T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIML 64 (140) T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSC T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCC T ss_conf 99899997999999999999998799899997899999999982799889997678 No 309 >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogenase; structural genomics, short-chain dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Probab=32.78 E-value=24 Score=15.08 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=48.6 Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH---HHHHHHH-----CCCCEEE Q ss_conf 376882889----999974890999809989999999985214--8852771132788---9876531-----2332478 Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ---LQDYVPD-----KGVDGVV 108 (341) Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl 108 (341) -|=|.+|== +.+++.+.+|+..|++++....+.+.+.+. +.++.++..+.++ +.+.+.. .++|.++ T Consensus 12 ITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV 91 (267) T 2gdz_A 12 VTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILV 91 (267) T ss_dssp EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 92858789999999999879989999797888999999999752798489999527999999999999999729988999 Q ss_pred EECCCHH Q ss_conf 6225207 Q gi|255764511|r 109 FDLGVSS 115 (341) Q Consensus 109 ~DLGvSS 115 (341) -+-|+++ T Consensus 92 nNAG~~~ 98 (267) T 2gdz_A 92 NNAGVNN 98 (267) T ss_dssp ECCCCCC T ss_pred ECCCCCC T ss_conf 8998797 No 310 >2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Probab=32.00 E-value=24 Score=15.00 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=41.9 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 89099980998999999998521488527711327889876531233247862252 Q gi|255764511|r 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 58 ~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341) -++|+-+|=|+.....-+..|+.++.++... .+-.+..+.+....+|.||.|+.+ T Consensus 3 ~~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a-~~~~~al~~l~~~~~dlillDl~m 57 (140) T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITL-SSPVSLSTVLREENPEVVLLDMNF 57 (140) T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEE-CCHHHHHHHHHHSCEEEEEEETTT T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEECCC T ss_conf 9989999799999999999999789999998-999999999972799999991688 No 311 >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Probab=31.69 E-value=25 Score=14.96 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=43.3 Q ss_pred CCCCHHH----HHHHHH-CCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHH Q ss_conf 6882889----999974-890999-8099899999999852148852771132788987653123324786225207888 Q gi|255764511|r 45 FGAGGYS----RSFCKM-GSNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQI 118 (341) Q Consensus 45 lG~GGHS----~~iL~~-~~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Ql 118 (341) .|.|+-+ ..++.. +..|+| .|+|++...... ++|+.- ..|+++++++....+|+|+.=.=- +.|. T Consensus 6 IG~G~~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~---~~~~~~-----~~~~~~~e~l~~~~iD~v~i~tp~-~~H~ 76 (332) T 2glx_A 6 IGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYA---TENGIG-----KSVTSVEELVGDPDVDAVYVSTTN-ELHR 76 (332) T ss_dssp ESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHH---HHTTCS-----CCBSCHHHHHTCTTCCEEEECSCG-GGHH T ss_pred ECCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH---HHHCCC-----CEECCHHHHHCCCCCCEEEECCCC-HHHH T ss_conf 9966999999999973899789999849999999999---980999-----401899999569999999996884-4657 Q ss_pred HHHH----HCCCCCCCCCE Q ss_conf 7654----07344566410 Q gi|255764511|r 119 DCGD----RGFSFQKSGPL 133 (341) Q Consensus 119 d~~~----RGFSf~~dgpL 133 (341) +-.. +|--.--+-|| T Consensus 77 ~~~~~al~~gk~v~~EKP~ 95 (332) T 2glx_A 77 EQTLAAIRAGKHVLCEKPL 95 (332) T ss_dssp HHHHHHHHTTCEEEECSSS T ss_pred HHHHHHHHCCCCEECCCCC T ss_conf 8899999869987536773 No 312 >3cg4_A Response regulator receiver domain protein (CHEY- like); structural genomics, unknown function, uncharacterized protein; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Probab=31.52 E-value=25 Score=14.95 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=43.8 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 4890999809989999999985214885277113278898765312332478622520 Q gi|255764511|r 57 MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 57 ~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) ..++|+-+|=|+......++.|+.++-++.. -.+-.+.-+.+....+|-|++|+.+. T Consensus 6 ~k~~VLiVDD~~~~r~~l~~~L~~~g~~v~~-a~~g~eal~~l~~~~~dliilD~~mP 62 (142) T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIIS-ADSGGQCIDLLKKGFSGVVLLDIMMP 62 (142) T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEE-ESSHHHHHHHHHTCCCEEEEEESCCS T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEECCCC T ss_conf 9995999979899999999999987999999-89999999999717999999838999 No 313 >1k2w_A Sorbitol dehydrogenase; short-chain dehydrogenase, enzyme, oxidoreductase; 2.40A {Rhodobacter sphaeroides} SCOP: c.2.1.2 Probab=31.28 E-value=25 Score=14.92 Aligned_cols=68 Identities=15% Similarity=0.161 Sum_probs=44.7 Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEEC Q ss_conf 7688288----99999748909998099899999999852148852771132788---9876531-----2332478622 Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DL 111 (341) |=|.+|= ++.+++.+.+|+..|++++.+....+. ++.++..+..+.++ +.+.+.. .++|.++-.- T Consensus 11 TGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA 87 (256) T 1k2w_A 11 TGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE---IGPAACAIALDVTDQASIDRCVAELLDRWGSIDILVNNA 87 (256) T ss_dssp ETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH---HCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---HCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 38886899999999998799899997989999999998---589569999738999999999999999769997999899 Q ss_pred CCH Q ss_conf 520 Q gi|255764511|r 112 GVS 114 (341) Q Consensus 112 GvS 114 (341) |+. T Consensus 88 G~~ 90 (256) T 1k2w_A 88 ALF 90 (256) T ss_dssp CCC T ss_pred CCC T ss_conf 999 No 314 >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Probab=31.00 E-value=25 Score=14.89 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=49.4 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHH---HHHHHHH----- Q ss_conf 8888998376882889----999974890999809989999999985214--8852771132788---9876531----- Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQ---LQDYVPD----- 101 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~---i~~~l~~----- 101 (341) .|.+.| -|=|.+|== +.+++.+.+|+..|++++.++.+.+.+.+. +.++..+..+.++ +...+.. T Consensus 12 ~gKval-VTGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 90 (267) T 1iy8_A 12 TDRVVL-ITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF 90 (267) T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC T ss_conf 979899-9378878999999999987998999978888899999999984799739999714899999999999999974 Q ss_pred CCCCEEEEECCCH Q ss_conf 2332478622520 Q gi|255764511|r 102 KGVDGVVFDLGVS 114 (341) Q Consensus 102 ~~vdgIl~DLGvS 114 (341) .++|.++-+-|++ T Consensus 91 G~iDiLVnNAG~~ 103 (267) T 1iy8_A 91 GRIDGFFNNAGIE 103 (267) T ss_dssp SCCSEEEECCCCC T ss_pred CCCCEEEECCCCC T ss_conf 9998999899888 No 315 >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Probab=30.72 E-value=25 Score=14.86 Aligned_cols=75 Identities=15% Similarity=0.248 Sum_probs=45.1 Q ss_pred EEEE-CCCCCCHH-HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEE Q ss_conf 8998-37688288-99999748909998099899999999852148852771132788---9876531-----2332478 Q gi|255764511|r 39 VILD-ATFGAGGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVV 108 (341) Q Consensus 39 ~~iD-~TlG~GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl 108 (341) ++|= |+=|-|-. ++.+++.+.+|+..||+++.++...+.+... .++..+.....+ +...... ..+|.++ T Consensus 24 vLVTGas~GIG~aiA~~la~~Ga~Vvl~~r~~e~l~~~~~el~~~-~~~~~~~~dv~~~~~~~~~~~~~~~~~g~iDilV 102 (272) T 2nwq_A 24 LFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLI 102 (272) T ss_dssp EEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEEE T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCC-CCEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 999875879999999999987998999989999999999985047-8779999512227888887655687648841999 Q ss_pred EECCCH Q ss_conf 622520 Q gi|255764511|r 109 FDLGVS 114 (341) Q Consensus 109 ~DLGvS 114 (341) -+-|+. T Consensus 103 nnAG~~ 108 (272) T 2nwq_A 103 NNAGLA 108 (272) T ss_dssp ECCCCC T ss_pred ECCCCC T ss_conf 878646 No 316 >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Probab=30.51 E-value=26 Score=14.84 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=21.3 Q ss_pred HHHHHHHHHHHHHCCC---CCCEEEEEEEC---CCHHHHHHH Q ss_conf 5789999998852024---45338998725---502389999 Q gi|255764511|r 225 IEELAQGLRSAEKALK---AGGLLIVVSFH---SLEDRLVKK 260 (341) Q Consensus 225 l~~L~~~L~~~~~~L~---~gGrl~VISFH---SLEDRiVK~ 260 (341) -+.-...|..+.+.|+ ||||+.|+-+- ..+|+.... T Consensus 266 d~~~~~iL~~~~~Al~~~~pgg~vli~e~~~~~~~~~~~~~~ 307 (358) T 1zg3_A 266 DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTE 307 (358) T ss_dssp HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHH T ss_conf 689999999999970646998289999842588888630267 No 317 >3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile 630} Probab=30.39 E-value=18 Score=15.89 Aligned_cols=26 Identities=4% Similarity=-0.036 Sum_probs=9.2 Q ss_pred CCCHHHH-HHHHHHHHHCCCCEEEECC Q ss_conf 0998999-9999985214885277113 Q gi|255764511|r 65 DRDPFAV-SCGQETMRDYKEQFSLFQA 90 (341) Q Consensus 65 DrD~~ai-~~a~~~l~~~~~r~~~~~~ 90 (341) ..+++.+ ..+.+....-.+-+.+.-+ T Consensus 28 ~~t~~e~l~~~~~~~~~~aD~vElRlD 54 (258) T 3js3_A 28 GKNKKDIIKEAKELKDACLDIIEWRVD 54 (258) T ss_dssp CSSHHHHHHHHHHHTTSSCSEEEEEGG T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 899899999999873459998999860 No 318 >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structural genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Probab=30.12 E-value=26 Score=14.80 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=57.9 Q ss_pred CCCCCEEEECCCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHH----HH- Q ss_conf 38888899837688288999----99748909998099899999999852148852771132788---98765----31- Q gi|255764511|r 34 PAPGKVILDATFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYV----PD- 101 (341) Q Consensus 34 ~~~~g~~iD~TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l----~~- 101 (341) |..|.+.| .|=|.+|==.+ +++.+.+|+..||+++.++...+.++.++.+...++..-.+ +..+. .+ T Consensus 2 pL~GKv~l-ITG~s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~l~~~~~~~~ 80 (260) T 2qq5_A 2 PMNGQVCV-VTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260) T ss_dssp TTTTCEEE-ESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHH T ss_pred CCCCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 99998899-95858699999999999879989999798899999999999649938999767899999999998646864 Q ss_pred -CCCCEEEEECCCHHHHHHH Q ss_conf -2332478622520788876 Q gi|255764511|r 102 -KGVDGVVFDLGVSSMQIDC 120 (341) Q Consensus 102 -~~vdgIl~DLGvSS~Qld~ 120 (341) ..+|.++.+-|+...+.-+ T Consensus 81 ~g~iDilVnnag~~~~~~~~ 100 (260) T 2qq5_A 81 QGRLDVLVNNAYAGVQTILN 100 (260) T ss_dssp TTCCCEEEECCCTTHHHHHH T ss_pred CCCCCEEEECCCCCCCCCCC T ss_conf 69876899706302444456 No 319 >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Probab=30.04 E-value=26 Score=14.79 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=41.1 Q ss_pred CEEEECCCCCCH-H-HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHHCCCCEEEEECC Q ss_conf 889983768828-8-9999974890999809989999999985214885277113278---8987653123324786225 Q gi|255764511|r 38 KVILDATFGAGG-Y-SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVPDKGVDGVVFDLG 112 (341) Q Consensus 38 g~~iD~TlG~GG-H-S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~---~i~~~l~~~~vdgIl~DLG 112 (341) .++|=|--|.=| | .+.+|+.+..|+++|++........+.. ...+++.++.+... .+.+......++.|+.--+ T Consensus 11 kILVTGgtGfIGs~L~~~Ll~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~~~~~v~h~aa 89 (357) T 1rkx_A 11 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETA-RVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAA 89 (357) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHT-TTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCS T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEC T ss_conf 8999689978999999999977998999978998617677654-014797699853689799999986148717898630 Q ss_pred CH Q ss_conf 20 Q gi|255764511|r 113 VS 114 (341) Q Consensus 113 vS 114 (341) .+ T Consensus 90 ~~ 91 (357) T 1rkx_A 90 QP 91 (357) T ss_dssp CC T ss_pred CC T ss_conf 57 No 320 >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Probab=29.90 E-value=26 Score=14.77 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=46.6 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHH----HCCC Q ss_conf 8888998376882889----9999748909998099899999999852148852771132788---987653----1233 Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVP----DKGV 104 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~----~~~v 104 (341) .|.+.| -|=|.+|== +.+++.+.+|+..||+++.+..+.+.+.. .+..++..+.++ +..... ..++ T Consensus 10 ~gKval-VTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~v~~~g~i 86 (254) T 2wsb_A 10 DGACAA-VTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGA--AVAARIVADVTDAEAMTAAAAEAEAVAPV 86 (254) T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GEEEEEECCTTCHHHHHHHHHHHHHHSCC T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC--CCEEEEEEECCCHHHHHHHHHHHHHHCCC T ss_conf 999899-948887899999999998799999997988999999998478--85689997489999999999999966999 Q ss_pred CEEEEECCCH Q ss_conf 2478622520 Q gi|255764511|r 105 DGVVFDLGVS 114 (341) Q Consensus 105 dgIl~DLGvS 114 (341) |.++-+-|+. T Consensus 87 DilVnnAG~~ 96 (254) T 2wsb_A 87 SILVNSAGIA 96 (254) T ss_dssp CEEEECCCCC T ss_pred CEEEECCCCC T ss_conf 8999899889 No 321 >1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Probab=29.42 E-value=27 Score=14.72 Aligned_cols=55 Identities=11% Similarity=0.039 Sum_probs=42.0 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 0999809989999999985214885277113278898765312332478622520 Q gi|255764511|r 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 60 ~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) +|.-+|=|+......+..|+..+-++.-...+-.+.-+.+....+|-||.|+.+. T Consensus 15 rILIVDDd~~~r~~l~~~L~~~G~~vv~~a~~g~eal~~~~~~~pDlillDi~MP 69 (205) T 1s8n_A 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMP 69 (205) T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCS T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCC T ss_conf 8999829899999999999986997999989999999999837999999964045 No 322 >1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Probab=29.34 E-value=27 Score=14.71 Aligned_cols=21 Identities=0% Similarity=0.121 Sum_probs=12.5 Q ss_pred HHHHHHHCCHHHHHHHHHHHC Q ss_conf 899986222578998999744 Q gi|255764511|r 144 ASDVVNQANVKDLTRILGILG 164 (341) Q Consensus 144 A~eiln~~s~~~L~~i~~~yG 164 (341) ..++.+..+++.++-++-+.. T Consensus 516 ~~~i~~s~D~ea~~~llar~a 536 (768) T 1m2o_A 516 TPAIAASFDQEAAAVLMARIA 536 (768) T ss_dssp CHHHHHTBCHHHHHHHHHHHH T ss_pred HHHHHHHCCHHHHHHHHHHHH T ss_conf 799987339999999999999 No 323 >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* Probab=28.84 E-value=27 Score=14.65 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=14.5 Q ss_pred CHHHHHHHHHHHHHCCCCCCEEEEEEECC Q ss_conf 05789999998852024453389987255 Q gi|255764511|r 224 EIEELAQGLRSAEKALKAGGLLIVVSFHS 252 (341) Q Consensus 224 El~~L~~~L~~~~~~L~~gGrl~VISFHS 252 (341) -+..|..++.-+..++++||++..+-=-. T Consensus 159 Ava~l~~ll~~~~~~lk~~g~~l~~KG~~ 187 (249) T 3g89_A 159 AVAPLCVLSELLLPFLEVGGAAVAMKGPR 187 (249) T ss_dssp SSCCHHHHHHHHGGGEEEEEEEEEEECSC T ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 52549999998644316798999989999 No 324 >2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=28.82 E-value=19 Score=15.71 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.8 Q ss_pred HHCCHHHHHHHHHHHCCCCH Q ss_conf 62225789989997446302 Q gi|255764511|r 149 NQANVKDLTRILGILGEEKQ 168 (341) Q Consensus 149 n~~s~~~L~~i~~~yGee~~ 168 (341) ..|+|++|..+|..||+... T Consensus 27 ~~~te~~L~~~F~~yG~V~~ 46 (100) T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLN 46 (100) T ss_dssp CSCCHHHHHHHHHTTSCEEE T ss_pred CCCCHHHHHHHHHHCCCEEE T ss_conf 99699999999974799559 No 325 >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Probab=28.81 E-value=27 Score=14.65 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=38.0 Q ss_pred CCCC--H--HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEE-CCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 6882--8--899999748909998099899999999852148852771-13278898765312332478622520 Q gi|255764511|r 45 FGAG--G--YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLF-QATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 45 lG~G--G--HS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~-~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) +|+| | |+.+--+.+-+++++|.++++-.. .+.+.+... ..+...+.++....++|+|+...+-. T Consensus 17 iG~Gqlgr~~a~Aak~lG~~v~~~~~~~~~p~~------~~ad~~~~~~~~D~e~l~~~a~~~~~d~v~~~~e~~ 85 (391) T 1kjq_A 17 LGSGELGKEVAIECQRLGVEVIAVDRYADAPAM------HVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI 85 (391) T ss_dssp ESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGG------GGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHH------HHCCEEEEECCCCHHHHHHHHHHHCCCEEEECCCCH T ss_conf 897899999999999879989999799998367------626636983688999999999984999999277745 No 326 >1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3 Probab=28.81 E-value=27 Score=14.65 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=14.2 Q ss_pred CCCHHHHHHHCCHHHHHHHHHHHCCC Q ss_conf 84189998622257899899974463 Q gi|255764511|r 141 GISASDVVNQANVKDLTRILGILGEE 166 (341) Q Consensus 141 ~~tA~eiln~~s~~~L~~i~~~yGee 166 (341) +.+..=+||..+---+.+.=+.|++. T Consensus 207 ~ta~k~iLn~ist~~~~~~gkv~~n~ 232 (306) T 1nri_A 207 GTAQKMVLNMLTTASMILLGKCYENL 232 (306) T ss_dssp HHHHHHHHHHHHHHHHHHTTSCBTTB T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999999999999859865560 No 327 >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Probab=28.64 E-value=28 Score=14.63 Aligned_cols=69 Identities=14% Similarity=0.200 Sum_probs=38.1 Q ss_pred CEEEECCCCC-CHH-HHHHHHHCCEEEEECCC----HHHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHHHCCCCEEE Q ss_conf 8899837688-288-99999748909998099----899999999852148852771132---78898765312332478 Q gi|255764511|r 38 KVILDATFGA-GGY-SRSFCKMGSNVIALDRD----PFAVSCGQETMRDYKEQFSLFQAT---FSQLQDYVPDKGVDGVV 108 (341) Q Consensus 38 g~~iD~TlG~-GGH-S~~iL~~~~~liaiDrD----~~ai~~a~~~l~~~~~r~~~~~~~---F~~i~~~l~~~~vdgIl 108 (341) .++|=+--|. |.| .+.+|+++.+|+++|+= ...+..... + ...++.++..+ ...+.+++...++|.|+ T Consensus 13 ~ILITGatGFIGs~Lv~~Ll~~g~~V~~iD~l~~~~~~~~~~~~~-~--~~~~v~~i~~Di~d~~~l~~~~~~~~~D~Vi 89 (699) T 1z45_A 13 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEV-L--TKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 89 (699) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHH-H--HTSCCCEEECCTTCHHHHHHHHHHSCCCEEE T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH-H--CCCCCEEEEEECCCHHHHHHHHHHCCCCEEE T ss_conf 899958984899999999997869699998888773555655565-3--2378769996578999999999777999999 Q ss_pred E Q ss_conf 6 Q gi|255764511|r 109 F 109 (341) Q Consensus 109 ~ 109 (341) - T Consensus 90 H 90 (699) T 1z45_A 90 H 90 (699) T ss_dssp E T ss_pred E T ss_conf 8 No 328 >2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.76A {Sinorhizobium medicae WSM419} Probab=28.13 E-value=28 Score=14.58 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=46.8 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECC----CHHHHHHHHHH Q ss_conf 8909998099899999999852148852771132788987653123324786225----20788876540 Q gi|255764511|r 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLG----VSSMQIDCGDR 123 (341) Q Consensus 58 ~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLG----vSS~Qld~~~R 123 (341) +.+|.-+|=|+.........|+.++-++....+.-.-+..+.....+|.|+.|+. .+-..+-..-| T Consensus 5 ~~~ILiVDDd~~~~~~l~~~L~~~G~~v~~a~s~~eAl~~l~~~~~~dlvi~D~~~p~~~~G~el~~~ir 74 (132) T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAR 74 (132) T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHH T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHH T ss_conf 9989999799999999999999879999998999999999983899879987300589999999999999 No 329 >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, MFE-1, fatty acid beta oxidation, oxidoreductase; 1.90A {Rattus norvegicus} Probab=28.04 E-value=28 Score=14.57 Aligned_cols=31 Identities=26% Similarity=0.562 Sum_probs=22.8 Q ss_pred HHH--HHHHHHCCEEEEECCCHHHHHHHHHHHH Q ss_conf 889--9999748909998099899999999852 Q gi|255764511|r 49 GYS--RSFCKMGSNVIALDRDPFAVSCGQETMR 79 (341) Q Consensus 49 GHS--~~iL~~~~~liaiDrD~~ai~~a~~~l~ 79 (341) |+. ..++..+-.|+-+|.+++++..+.+++. T Consensus 49 G~~IA~~~a~~G~~V~l~D~~~~~~~~~~~~i~ 81 (463) T 1zcj_A 49 GRGIAISFARVGISVVAVESDPKQLDAAKKIIT 81 (463) T ss_dssp HHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHH T ss_conf 999999998099947999699899999999999 No 330 >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Probab=27.99 E-value=28 Score=14.56 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=47.7 Q ss_pred CCCCCHHHH----HHHHHCCEEEEECCCHHHHHHHH-HHHHHCCCCEEEECCCHHHH---HHHHHH-----CCCCEEEEE Q ss_conf 768828899----99974890999809989999999-98521488527711327889---876531-----233247862 Q gi|255764511|r 44 TFGAGGYSR----SFCKMGSNVIALDRDPFAVSCGQ-ETMRDYKEQFSLFQATFSQL---QDYVPD-----KGVDGVVFD 110 (341) Q Consensus 44 TlG~GGHS~----~iL~~~~~liaiDrD~~ai~~a~-~~l~~~~~r~~~~~~~F~~i---~~~l~~-----~~vdgIl~D 110 (341) |-|.+|==+ .+++.+.+|+..|++++.+..+. +..+.++.++.++..+.++- .+.+.. .++|.++-+ T Consensus 8 TGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn 87 (250) T 2cfc_A 8 TGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAIDVLVNN 87 (250) T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEC T ss_conf 17897899999999998799899998988899999999998549948999940799999999999999975999799989 Q ss_pred CCCHH Q ss_conf 25207 Q gi|255764511|r 111 LGVSS 115 (341) Q Consensus 111 LGvSS 115 (341) =|++. T Consensus 88 AGi~~ 92 (250) T 2cfc_A 88 AGITG 92 (250) T ss_dssp CCCCC T ss_pred CCCCC T ss_conf 97688 No 331 >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* Probab=27.75 E-value=29 Score=14.53 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=41.0 Q ss_pred HHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCH---HHHHHHHH----H-CCCCEEEEECCCH Q ss_conf 88999997489099980998999999998521488527711327---88987653----1-2332478622520 Q gi|255764511|r 49 GYSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATF---SQLQDYVP----D-KGVDGVVFDLGVS 114 (341) Q Consensus 49 GHS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F---~~i~~~l~----~-~~vdgIl~DLGvS 114 (341) .-++.+++.+.+|+..|+++...+.+++...... ....+.... ..+.+.+. . ..+|.++...|+. T Consensus 23 aiA~~la~~G~~V~i~~r~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~g~id~lv~~ag~~ 95 (275) T 2pd4_A 23 GIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN-SPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFA 95 (275) T ss_dssp HHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT-CCCEEECCTTCHHHHHHHHHHHHHHTSCEEEEEECCCCC T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 9999999879999999688799999999985368-835998414537899999999999819988899535433 No 332 >1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A Probab=27.52 E-value=29 Score=14.51 Aligned_cols=56 Identities=4% Similarity=0.112 Sum_probs=43.1 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 890999809989999999985214885277113278898765312332478622520 Q gi|255764511|r 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 58 ~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) .+++.-+|-|+.........|+..+-++....+.- +.-+.+....+|-|+.|+.+. T Consensus 3 ~p~ILiVdDd~~~~~~l~~~L~~~g~~v~~a~~~~-~al~~l~~~~~dlii~D~~lP 58 (123) T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGA-EMHQILSEYDINLVIMDINLP 58 (123) T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHH-HHHHHHHHSCCSEEEECSSCS T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHCCCCCEEEEECCCC T ss_conf 99999996999999999999998799999989999-999999708999999968999 No 333 >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Vibrio parahaemolyticus AQ3810} Probab=27.30 E-value=29 Score=14.48 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=34.5 Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECC---CHHHHHHHHHHC--CCCEEEEECCC Q ss_conf 9999974890999809989999999985214885277113---278898765312--33247862252 Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQA---TFSQLQDYVPDK--GVDGVVFDLGV 113 (341) Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~---~F~~i~~~l~~~--~vdgIl~DLGv 113 (341) ++.+.+.+.+|+..||+++-++...+.+ ..++..+.. +...+.+.+... .+|.++..-|+ T Consensus 18 A~~la~~G~~V~l~~R~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~d~linnaG~ 82 (230) T 3guy_A 18 AKLYDAEGKATYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAGS 82 (230) T ss_dssp HHHHHHTTCCEEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCCC T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCC T ss_conf 9999987998999989999999999985---4346889700699999999999858838799986875 No 334 >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Probab=27.25 E-value=29 Score=14.48 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=41.0 Q ss_pred CCCCH----HHHHHHHHC--CEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHH Q ss_conf 68828----899999748--90999-809989999999985214885277113278898765312332478622520788 Q gi|255764511|r 45 FGAGG----YSRSFCKMG--SNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 (341) Q Consensus 45 lG~GG----HS~~iL~~~--~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Q 117 (341) +|.|. |..+++... .+|+| .|++++..+...+ +|+.... .|+++++++....+|+|+.= .....| T Consensus 8 iG~G~~g~~h~~~~~~~~~~~~l~~v~d~~~~~~~~~~~---~~~~~~~----~~~~~~~ll~~~~~D~V~i~-tp~~~H 79 (344) T 3mz0_A 8 IGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVE---QYQLNAT----VYPNDDSLLADENVDAVLVT-SWGPAH 79 (344) T ss_dssp ECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHH---HTTCCCE----EESSHHHHHHCTTCCEEEEC-SCGGGH T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH---HHCCCCC----EECCHHHHHCCCCCCEEEEC-CCCCCH T ss_conf 998299999999998428996899998999999999999---8589980----67999999559998889962-652115 Q ss_pred HHHHHHCC Q ss_conf 87654073 Q gi|255764511|r 118 IDCGDRGF 125 (341) Q Consensus 118 ld~~~RGF 125 (341) .+-..... T Consensus 80 ~~~~~~al 87 (344) T 3mz0_A 80 ESSVLKAI 87 (344) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999998 No 335 >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative; 2.00A {Streptococcus agalactiae serogroup V} Probab=27.14 E-value=27 Score=14.73 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=41.6 Q ss_pred HHHHHHHHC-CEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHH----HHH Q ss_conf 899999748-90999-809989999999985214885277113278898765312332478622520788876----540 Q gi|255764511|r 50 YSRSFCKMG-SNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC----GDR 123 (341) Q Consensus 50 HS~~iL~~~-~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~----~~R 123 (341) |..++.... ..|+| .|+|++.... +..++-+ ...|+++++++...++|+|+.-.-.+ .|++- -++ T Consensus 20 h~~~l~~~~~~~v~~v~d~~~~~~~~-------~a~~~~~-~~~~~~~~~ll~~~~~D~V~I~tp~~-~H~~~~~~al~~ 90 (329) T 3evn_A 20 FIEGVRLAGNGEVVAVSSRTLESAQA-------FANKYHL-PKAYDKLEDMLADESIDVIYVATINQ-DHYKVAKAALLA 90 (329) T ss_dssp HHHHHHHHCSEEEEEEECSCSSTTCC----------CCCC-SCEESCHHHHHTCTTCCEEEECSCGG-GHHHHHHHHHHT T ss_pred HHHHHHHCCCCEEEEEECCCHHHHHH-------HHHHCCC-CCEECCHHHHHCCCCCCEEEECCCHH-HHHHHHHHHHHC T ss_conf 99999868992899998899999999-------9998599-80668999996288988899058266-555778999987 Q ss_pred CCCCCCCCCEE Q ss_conf 73445664101 Q gi|255764511|r 124 GFSFQKSGPLD 134 (341) Q Consensus 124 GFSf~~dgpLD 134 (341) |-..--+-|+- T Consensus 91 gk~vl~EKP~a 101 (329) T 3evn_A 91 GKHVLVEKPFT 101 (329) T ss_dssp TCEEEEESSCC T ss_pred CCEEEEEECCC T ss_conf 99899972454 No 336 >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Probab=26.96 E-value=30 Score=14.44 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=44.6 Q ss_pred CCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHC---CCCEEEECCC---HHHHHHHHHH-----CCCCEE Q ss_conf 37688288----9999974890999809989999999985214---8852771132---7889876531-----233247 Q gi|255764511|r 43 ATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDY---KEQFSLFQAT---FSQLQDYVPD-----KGVDGV 107 (341) Q Consensus 43 ~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~---~~r~~~~~~~---F~~i~~~l~~-----~~vdgI 107 (341) -|-|.+|= ++.+++.+.+|+.+||+++.++...+.+... ..++.++... .+.+...+.. ..+|.+ T Consensus 12 ITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iDiL 91 (250) T 3nyw_A 12 ITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKYGAVDIL 91 (250) T ss_dssp EESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHHCCEEEE T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEE T ss_conf 95697399999999999879989999898999999999999835888745899801899999999999999981996399 Q ss_pred EEECCCH Q ss_conf 8622520 Q gi|255764511|r 108 VFDLGVS 114 (341) Q Consensus 108 l~DLGvS 114 (341) +-.-|++ T Consensus 92 VnnAG~~ 98 (250) T 3nyw_A 92 VNAAAMF 98 (250) T ss_dssp EECCCCC T ss_pred EECCCCC T ss_conf 9876347 No 337 >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold; HET: 1PE MES; 1.80A {Aquifex aeolicus VF5} PDB: 2p68_A* Probab=26.93 E-value=30 Score=14.44 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=51.5 Q ss_pred CCCEEEECCCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHH-HHCCCCEEEECCCHHH---HHHHHH----H-C Q ss_conf 888899837688288999----9974890999809989999999985-2148852771132788---987653----1-2 Q gi|255764511|r 36 PGKVILDATFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETM-RDYKEQFSLFQATFSQ---LQDYVP----D-K 102 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l-~~~~~r~~~~~~~F~~---i~~~l~----~-~ 102 (341) .|.+.| -|=|.+|==++ +++.+.+|+..||+++.+..+.+.+ +.++.++.++..+.++ +.+.+. . . T Consensus 6 ~gK~al-VTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 84 (248) T 2pnf_A 6 QGKVSL-VTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD 84 (248) T ss_dssp TTCEEE-ETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCC T ss_conf 999899-9377878999999999987998999979889999999999886299389998678999999999999999749 Q ss_pred CCCEEEEECCCH Q ss_conf 332478622520 Q gi|255764511|r 103 GVDGVVFDLGVS 114 (341) Q Consensus 103 ~vdgIl~DLGvS 114 (341) ++|.++-+-|+. T Consensus 85 ~iDiLVnnAG~~ 96 (248) T 2pnf_A 85 GIDILVNNAGIT 96 (248) T ss_dssp CCSEEEECCCCC T ss_pred CCCEEEECCCCC T ss_conf 987999899889 No 338 >3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A Probab=26.24 E-value=30 Score=14.36 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=15.8 Q ss_pred CCCCHHHHHHHHH----CCEEEEECCC Q ss_conf 6882889999974----8909998099 Q gi|255764511|r 45 FGAGGYSRSFCKM----GSNVIALDRD 67 (341) Q Consensus 45 lG~GGHS~~iL~~----~~~liaiDrD 67 (341) +|+|||++.+++. +-.+++|.-| T Consensus 9 ~Gagg~~~~v~di~~~~~~~~~~f~Dd 35 (194) T 3bfp_A 9 YGASGHGLVCEDVAKNMGYKECIFLDD 35 (194) T ss_dssp EC--CHHHHHHHHHHHHTCSEEEEEC- T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 948787999999998689938999919 No 339 >1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Probab=26.18 E-value=30 Score=14.35 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=41.8 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 4890999809989999999985214885277113278898765312332478622520 Q gi|255764511|r 57 MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 57 ~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) +.|+|+-+|=|+.....-...|+..+-.+.... +-.+....+....+|-|+.|+.+. T Consensus 2 a~P~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~dliilD~~mP 58 (155) T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFA-SATEALAGLSADFAGIVISDIRMP 58 (155) T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEES-CHHHHHHTCCTTCCSEEEEESCCS T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHCCCCCEEECCCCCC T ss_conf 999899995999999999999998799899978-999999985326987776545789 No 340 >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Probab=25.66 E-value=31 Score=14.29 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=50.9 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHH-HCCCCEEEECCCHHHH---HHHHHH-----C Q ss_conf 8888998376882889----9999748909998099899999999852-1488527711327889---876531-----2 Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMR-DYKEQFSLFQATFSQL---QDYVPD-----K 102 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~-~~~~r~~~~~~~F~~i---~~~l~~-----~ 102 (341) .|.+.| -|-|.+|== +.+++.+.+|+..|++++.+..+.+.+. .++.++..+..+.++- ...+.. . T Consensus 25 ~GKval-VTGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~~g~~~~~~~~Dls~~~~v~~~~~~~~~~~G 103 (302) T 1w6u_A 25 QGKVAF-ITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG 103 (302) T ss_dssp TTCEEE-EETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHCC T ss_conf 999899-9379868999999999987998999979888999999999886399289999328999999999999999819 Q ss_pred CCCEEEEECCCH Q ss_conf 332478622520 Q gi|255764511|r 103 GVDGVVFDLGVS 114 (341) Q Consensus 103 ~vdgIl~DLGvS 114 (341) .+|.++-.-|+. T Consensus 104 ~iDiLVnnAg~~ 115 (302) T 1w6u_A 104 HPNIVINNAAGN 115 (302) T ss_dssp SCSEEEECCCCC T ss_pred CCCEEEECCCCC T ss_conf 987899777434 No 341 >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Probab=25.29 E-value=23 Score=15.12 Aligned_cols=80 Identities=14% Similarity=0.101 Sum_probs=42.0 Q ss_pred CEEEECCCCC-CHH-HHHHHHHCCEEEEECCCHHHHHHHHHHHH-HCCCCEEEECCCHHHHHHHHH-HCCCCEEEEECCC Q ss_conf 8899837688-288-99999748909998099899999999852-148852771132788987653-1233247862252 Q gi|255764511|r 38 KVILDATFGA-GGY-SRSFCKMGSNVIALDRDPFAVSCGQETMR-DYKEQFSLFQATFSQLQDYVP-DKGVDGVVFDLGV 113 (341) Q Consensus 38 g~~iD~TlG~-GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l~-~~~~r~~~~~~~F~~i~~~l~-~~~vdgIl~DLGv 113 (341) -++|=+--|. |.| .+.+|+.+-+|+|+.||++.......... ....++.++..+..+...+.. ..+++.++..... T Consensus 11 ~vlVTGatGfIG~~l~~~Ll~~g~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~~~ 90 (338) T 2rh8_A 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVATP 90 (338) T ss_dssp EEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEESSC T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCC T ss_conf 89997797399999999999786989999888740788886774145787399975344224445422576431000023 Q ss_pred HHHH Q ss_conf 0788 Q gi|255764511|r 114 SSMQ 117 (341) Q Consensus 114 SS~Q 117 (341) .+.. T Consensus 91 ~~~~ 94 (338) T 2rh8_A 91 VHFA 94 (338) T ss_dssp CCC- T ss_pred CCCC T ss_conf 2222 No 342 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* Probab=25.18 E-value=32 Score=14.24 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=38.3 Q ss_pred CCCC--H--HHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEC-CCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 6882--8--8999997489099980998999999998521488527711-3278898765312332478622520 Q gi|255764511|r 45 FGAG--G--YSRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQ-ATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 45 lG~G--G--HS~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~-~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) +|+| | ++.+--+.+-+++.+|.++++-.. + +.+++.... .+...+.+++...++|+|+...+-- T Consensus 25 lG~Gqlgr~la~aA~~lG~~v~v~d~~~~~pa~--~----~ad~~~~~~~~D~e~l~~~a~~~~~d~v~~~~e~~ 93 (433) T 2dwc_A 25 LGSGELGKEIAIEAQRLGVEVVAVDRYANAPAM--Q----VAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAI 93 (433) T ss_dssp ESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHH--H----HSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCS T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEECCCCCCHH--H----HCCEEEECCCCCHHHHHHHHHHHCCCEEEECCCCC T ss_conf 998899999999999869989999797988677--7----35558977999999999999982999999797866 No 343 >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Probab=25.11 E-value=32 Score=14.23 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=45.6 Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHH-----CCCCEEEECCCHHH---HHHHHHH-----CCCCE Q ss_conf 7688288----999997489099980998999999998521-----48852771132788---9876531-----23324 Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRD-----YKEQFSLFQATFSQ---LQDYVPD-----KGVDG 106 (341) Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~-----~~~r~~~~~~~F~~---i~~~l~~-----~~vdg 106 (341) |-|.+|= ++.+++.+.+|+..|++++.+..+.+.+.. .+.++..+..+.++ +.+.+.. ..+|. T Consensus 24 TGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDi 103 (303) T 1yxm_A 24 TGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINF 103 (303) T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCE T ss_conf 38986899999999998799899997988999999999984304256965999974589999999999999997399989 Q ss_pred EEEECCCH Q ss_conf 78622520 Q gi|255764511|r 107 VVFDLGVS 114 (341) Q Consensus 107 Il~DLGvS 114 (341) ++-+-|+. T Consensus 104 LVnnAg~~ 111 (303) T 1yxm_A 104 LVNNGGGQ 111 (303) T ss_dssp EEECCCCC T ss_pred EEECCCCC T ss_conf 99899899 No 344 >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 Probab=24.93 E-value=32 Score=14.21 Aligned_cols=66 Identities=9% Similarity=-0.054 Sum_probs=41.8 Q ss_pred CCCCHHHHHHHH----HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH--HHCCCCEEEEECC Q ss_conf 688288999997----4890999809989999999985214885277113278898765--3123324786225 Q gi|255764511|r 45 FGAGGYSRSFCK----MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYV--PDKGVDGVVFDLG 112 (341) Q Consensus 45 lG~GGHS~~iL~----~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l--~~~~vdgIl~DLG 112 (341) +|+|.-+..+++ .+..++.+|.||+......+.. +...+.++++++.+-..+. .-.+.+++++-.+ T Consensus 9 ~G~g~~g~~l~~~L~~~~~~v~vId~~~e~~~~~~~~~--~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~t~ 80 (153) T 1id1_A 9 CGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR--LGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153) T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH--HCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH--HCCCCEEEEECCCCHHHHHHCCCCCCCEEEECCC T ss_conf 89888999999999977998899978867789999985--4389879991679999997579883389999869 No 345 >2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics, protein structure initiative; 2.89A {Clostridium difficile 630} Probab=24.61 E-value=33 Score=14.17 Aligned_cols=57 Identities=9% Similarity=0.068 Sum_probs=42.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHH Q ss_conf 8909998099899999999852148852771132788987653123324786225207 Q gi|255764511|r 58 GSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSS 115 (341) Q Consensus 58 ~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS 115 (341) ..+++-+|-|+.........|+..+-.+.... +-.+.-+.+....+|-|++|+.+.. T Consensus 4 ~~kILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~eal~~l~~~~~dlillD~~mP~ 60 (136) T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAY-NCEEAIGKIFSNKYDLIFLEIILSD 60 (136) T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEES-SHHHHHHHHHHCCCSEEEEESEETT T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEECCCCCC T ss_conf 77599998999999999999998799999989-9999999886279999997799989 No 346 >3hdv_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.09A {Pseudomonas putida KT2440} Probab=24.47 E-value=33 Score=14.15 Aligned_cols=59 Identities=8% Similarity=-0.057 Sum_probs=41.3 Q ss_pred HHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 74890999809989999999985214885277113278898765312332478622520 Q gi|255764511|r 56 KMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 56 ~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) ..-++|.-+|=|+.........|+.++-.+....+.-.-+..+.....+|-|+.|+.+. T Consensus 5 ~~r~~ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~~~~a~~~l~~~~~~dlii~D~~mP 63 (136) T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQ 63 (136) T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCS T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCC T ss_conf 99988999979999999999999987999999899999999997579998899879899 No 347 >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Probab=24.42 E-value=33 Score=14.14 Aligned_cols=75 Identities=25% Similarity=0.302 Sum_probs=48.3 Q ss_pred CCCEEEECCCCCCHHHHH----HHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHH-----CC Q ss_conf 888899837688288999----9974890999809989999999985214885277113278---89876531-----23 Q gi|255764511|r 36 PGKVILDATFGAGGYSRS----FCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVPD-----KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS~~----iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~---~i~~~l~~-----~~ 103 (341) .|.+.| -|-|.+|==++ +++.+.+|+..|++++.++...+.+ +.++.++..+.+ ++...+.. .. T Consensus 28 ~GKval-VTGas~GIG~aiA~~la~~Ga~V~~~~~~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 103 (277) T 3gvc_A 28 AGKVAI-VTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAAFGG 103 (277) T ss_dssp TTCEEE-ETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHHHSS T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---CCCEEEEEEECCCHHHHHHHHHHHHHHCCC T ss_conf 999899-9387878999999999987999999979889999999982---996489996389999999999999997399 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++-+-|+. T Consensus 104 iDiLVnNAG~~ 114 (277) T 3gvc_A 104 VDKLVANAGVV 114 (277) T ss_dssp CCEEEECCCCC T ss_pred CCEEEECCCCC T ss_conf 98999899889 No 348 >2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92, PSI-2; 2.10A {Neptuniibacter caesariensis} Probab=24.38 E-value=33 Score=14.14 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=40.4 Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCH Q ss_conf 0999809989999999985214885277113278898765312332478622520 Q gi|255764511|r 60 NVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVS 114 (341) Q Consensus 60 ~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvS 114 (341) +|+-+|=|+......+..|+.++-.+.. -.+-.+.-+.+....+|.|+.|+.+. T Consensus 9 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~-a~~~~~Al~~l~~~~~dliilD~~mp 62 (154) T 2rjn_A 9 TVMLVDDEQPILNSLKRLIKRLGCNIIT-FTSPLDALEALKGTSVQLVISDMRMP 62 (154) T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEE-ESCHHHHHHHHTTSCCSEEEEESSCS T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHCCCCCEEEECCCCC T ss_conf 8999979999999999999987998999-89999999998628998899668888 No 349 >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, short chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Probab=24.32 E-value=33 Score=14.13 Aligned_cols=79 Identities=22% Similarity=0.216 Sum_probs=53.1 Q ss_pred CCCCEEEECCCCCCHHHHH----HHHHCCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHH---HHHH----H- Q ss_conf 8888899837688288999----9974890999-809989999999985214885277113278898---7653----1- Q gi|255764511|r 35 APGKVILDATFGAGGYSRS----FCKMGSNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQ---DYVP----D- 101 (341) Q Consensus 35 ~~~g~~iD~TlG~GGHS~~----iL~~~~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~---~~l~----~- 101 (341) ..|.+ +=-|=|.+|==++ +++.+.+|+. .+++++..+...+.+++++.++.++..+.++-+ ..+. . T Consensus 19 L~GKv-alVTGas~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 97 (274) T 1ja9_A 19 LAGKV-ALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274) T ss_dssp TTTCE-EEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH T ss_pred CCCCE-EEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 99998-99968886899999999998799899972898789999999999739958999824899999999999999982 Q ss_pred CCCCEEEEECCCH Q ss_conf 2332478622520 Q gi|255764511|r 102 KGVDGVVFDLGVS 114 (341) Q Consensus 102 ~~vdgIl~DLGvS 114 (341) .++|.++-+-|+. T Consensus 98 G~iDiLVnnAG~~ 110 (274) T 1ja9_A 98 GGLDFVMSNSGME 110 (274) T ss_dssp SCEEEEECCCCCC T ss_pred CCCCEEEECCCCC T ss_conf 9987999786036 No 350 >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} Probab=24.01 E-value=33 Score=14.10 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.0 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHC Q ss_conf 8999999885202445338998725502389999998641 Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRS 266 (341) Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~ 266 (341) -|.-+=.++...|+|||-++++.|-= -||.-.+..-..+ T Consensus 232 ~l~mL~~~al~~L~pGGt~v~~aYGy-ADR~SE~vv~alA 270 (320) T 2hwk_A 232 KLSMLTKKACLHLNPGGTCVSIGYGY-ADRASESIIGAIA 270 (320) T ss_dssp HHHHTHHHHGGGEEEEEEEEEEECCC-CSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEC-CCCHHHHHHHHHH T ss_conf 99887788985038984599986303-4220688999987 No 351 >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... Probab=23.89 E-value=34 Score=14.08 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=23.2 Q ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 34057899999988520244533899872 Q gi|255764511|r 222 NNEIEELAQGLRSAEKALKAGGLLIVVSF 250 (341) Q Consensus 222 N~El~~L~~~L~~~~~~L~~gGrl~VISF 250 (341) -.-.++...++..+..+|+|||.|+++.+ T Consensus 188 ~~~~~~~~~~~~~~~~lLkpGG~li~~~~ 216 (289) T 2g72_A 188 SPDLASFQRALDHITTLLRPGGHLLLIGA 216 (289) T ss_dssp CSSHHHHHHHHHHHHTTEEEEEEEEEEEE T ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEEEEE T ss_conf 79889999999999997579968999996 No 352 >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Probab=23.25 E-value=35 Score=14.00 Aligned_cols=57 Identities=21% Similarity=0.269 Sum_probs=35.0 Q ss_pred EEEECCCCC-CHH-HHHHHHHCCEEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCHHHH Q ss_conf 899837688-288-9999974890999809989999999985214--88527711327889 Q gi|255764511|r 39 VILDATFGA-GGY-SRSFCKMGSNVIALDRDPFAVSCGQETMRDY--KEQFSLFQATFSQL 95 (341) Q Consensus 39 ~~iD~TlG~-GGH-S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~--~~r~~~~~~~F~~i 95 (341) ++|=+--|. |.| .+.+++.+-.|++++||+.-.......+.-. .+++.++.....+. T Consensus 8 VlITGatGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 68 (337) T 2c29_D 8 VCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADE 68 (337) T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTST T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCEEEEECCCCCH T ss_conf 9998898699999999999783989999788652788998874015667659996505562 No 353 >3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Probab=22.78 E-value=35 Score=13.94 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=42.1 Q ss_pred HCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCC Q ss_conf 489099980998999999998521488527711327889876531233247862252 Q gi|255764511|r 57 MGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGV 113 (341) Q Consensus 57 ~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGv 113 (341) +.++|.-+|-|+.........|+.++-.+.... +-.+--+.+....+|-|+.|+.+ T Consensus 13 ~kp~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~-~~~eAl~~l~~~~~dlvi~D~~m 68 (153) T 3hv2_A 13 RRPEILLVDSQEVILQRLQQLLSPLPYTLHFAR-DATQALQLLASREVDLVISAAHL 68 (153) T ss_dssp SCCEEEEECSCHHHHHHHHHHHTTSSCEEEEES-SHHHHHHHHHHSCCSEEEEESCC T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEECCC T ss_conf 999799997999999999999998799999989-99999999872799999983678 No 354 >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Probab=22.63 E-value=36 Score=13.92 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=47.7 Q ss_pred CCCCCCHHH----HHHHHHCCEEEEECCCH-HHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEE Q ss_conf 376882889----99997489099980998-99999999852148852771132788---9876531-----23324786 Q gi|255764511|r 43 ATFGAGGYS----RSFCKMGSNVIALDRDP-FAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVF 109 (341) Q Consensus 43 ~TlG~GGHS----~~iL~~~~~liaiDrD~-~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~ 109 (341) -|=|.+|== +.+++.+.+|+..|++. +.++...+.++.++.++.++..+.++ +.+.+.. .++|.++- T Consensus 10 ITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVn 89 (247) T 2hq1_A 10 VTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGRIDILVN 89 (247) T ss_dssp ESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 93798689999999999879989999488367999999999854995899984799999999999999997599989998 Q ss_pred ECCCHH Q ss_conf 225207 Q gi|255764511|r 110 DLGVSS 115 (341) Q Consensus 110 DLGvSS 115 (341) +=|++. T Consensus 90 nAG~~~ 95 (247) T 2hq1_A 90 NAGITR 95 (247) T ss_dssp CC---- T ss_pred CCCCCC T ss_conf 999999 No 355 >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} Probab=22.60 E-value=36 Score=13.92 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=41.4 Q ss_pred CCCHHHHHHHH---HCC--EEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHH Q ss_conf 88288999997---489--0999-80998999999998521488527711327889876531233247862252078887 Q gi|255764511|r 46 GAGGYSRSFCK---MGS--NVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQID 119 (341) Q Consensus 46 G~GGHS~~iL~---~~~--~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld 119 (341) |.|+-....+. ..+ .|+| .|+++++.+.+. ++. +. -|.++.+++....+|+|+.=.-. +.|.+ T Consensus 12 G~G~~g~~h~~~~~~~~~~~l~av~d~~~~~~~~~~----~~~--~~----~~~~~~ell~~~~iD~V~i~tp~-~~h~~ 80 (359) T 3e18_A 12 GYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA----QKG--LK----IYESYEAVLADEKVDAVLIATPN-DSHKE 80 (359) T ss_dssp CCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH----TTT--CC----BCSCHHHHHHCTTCCEEEECSCG-GGHHH T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH----HCC--CC----CCCCHHHHHCCCCCCEEEECCCC-HHHHH T ss_conf 467999999999985899589999889999999998----629--97----01999999559998989987880-55235 Q ss_pred H----HHHCCCCCCCCCEE Q ss_conf 6----54073445664101 Q gi|255764511|r 120 C----GDRGFSFQKSGPLD 134 (341) Q Consensus 120 ~----~~RGFSf~~dgpLD 134 (341) - -+.|-..--+-|+- T Consensus 81 ~~~~al~~gkhv~~EKP~a 99 (359) T 3e18_A 81 LAISALEAGKHVVCEKPVT 99 (359) T ss_dssp HHHHHHHTTCEEEEESSCC T ss_pred HHHHHHHCCCEEEEECCCC T ss_conf 6788885398199957864 No 356 >3l6e_A Oxidoreductase, short-chain dehydrogenase/reductase family; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Probab=22.55 E-value=36 Score=13.91 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=36.1 Q ss_pred HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CCCCEEEEECCCH Q ss_conf 99999748909998099899999999852148852771132788---9876531-----2332478622520 Q gi|255764511|r 51 SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KGVDGVVFDLGVS 114 (341) Q Consensus 51 S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~vdgIl~DLGvS 114 (341) ++.+++.+.+|+..|||++.++...+.+ ++++..+..+.++ ++..+.. ..+|.++-.-|+. T Consensus 20 a~~la~~G~~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idilinnAG~~ 88 (235) T 3l6e_A 20 TIGLVERGHQVSMMGRRYQRLQQQELLL---GNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTG 88 (235) T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHHH---GGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEEEECCCC T ss_pred HHHHHHCCCEEEEEECCHHHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9999987998999989899999999973---99669998578999999999999999779956999788777 No 357 >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; NP_070841.1, 3-hydroxyacyl-COA dehydrogenase (HBD-9), structural genomics; HET: PE8; 2.00A {Archaeoglobus fulgidus dsm 4304} Probab=22.03 E-value=36 Score=13.85 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=27.1 Q ss_pred HHHHHHH-HHCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEE Q ss_conf 8899999-74890999809989999999985214-8852771 Q gi|255764511|r 49 GYSRSFC-KMGSNVIALDRDPFAVSCGQETMRDY-KEQFSLF 88 (341) Q Consensus 49 GHS~~iL-~~~~~liaiDrD~~ai~~a~~~l~~~-~~r~~~~ 88 (341) |+.-|.+ -.+..|.-+|.+++++..+++++.+. ..++++. T Consensus 24 G~~IA~~~a~g~~V~l~d~~~~~l~~~~~~i~~~~~~~i~~~ 65 (293) T 1zej_A 24 GRGIAIAIASKHEVVLQDVSEKALEAAREQIPEELLSKIEFT 65 (293) T ss_dssp HHHHHHHHHTTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEE T ss_pred HHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 999999997799459998999999999998699999568623 No 358 >1bdb_A CIS-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase; NAD-dependent oxidoreductase, short-chain alcohol dehydrogenase, PCB degradation; HET: NAD; 2.00A {Pseudomonas SP} SCOP: c.2.1.2 Probab=21.86 E-value=37 Score=13.82 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=43.6 Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHH---HHHHH----H-CCCCEEEEEC Q ss_conf 7688288----999997489099980998999999998521488527711327889---87653----1-2332478622 Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQL---QDYVP----D-KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i---~~~l~----~-~~vdgIl~DL 111 (341) |=|.+|= ++.+++.+.+|+..||+++.+....+ +++.++.++..+.++. .+.+. . ..+|.++.+- T Consensus 11 TGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 87 (277) T 1bdb_A 11 TGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET---DHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTLIPNA 87 (277) T ss_dssp ETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEECCC T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECC T ss_conf 4878799999999999889999999799899999999---7599779998237999999999999999859986999888 Q ss_pred CCH Q ss_conf 520 Q gi|255764511|r 112 GVS 114 (341) Q Consensus 112 GvS 114 (341) |+. T Consensus 88 G~~ 90 (277) T 1bdb_A 88 GIW 90 (277) T ss_dssp CCC T ss_pred CCC T ss_conf 657 No 359 >2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Probab=21.79 E-value=4.4 Score=19.82 Aligned_cols=193 Identities=11% Similarity=0.054 Sum_probs=84.9 Q ss_pred HHCCEEEEECCCHHHHHHHHHH---HHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCC---- Q ss_conf 7489099980998999999998---521488527711327889876531233247862252078887654073445---- Q gi|255764511|r 56 KMGSNVIALDRDPFAVSCGQET---MRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQ---- 128 (341) Q Consensus 56 ~~~~~liaiDrD~~ai~~a~~~---l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Qld~~~RGFSf~---- 128 (341) +..|++.|||.|- +-..++.. +...+-.+.+....+......+....+|.++..++.+.- .+..|.|. T Consensus 34 d~~G~~~G~~vDl-~~~ia~~l~~~l~~~~~~v~~~~~~~~~~~~~L~~G~~Di~~~~~~~t~~----R~~~~~fs~p~~ 108 (287) T 2vha_A 34 DNQQKVVGYSQDY-SNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVE----RQKQAAFSDTIF 108 (287) T ss_dssp CSSSCEESHHHHH-HHHHHHHHHHHTTCTTCEEEEEECCTTTHHHHHHTTSCSEECSSCBCCHH----HHTTCEEEEEEE T ss_pred CCCCCEEEEHHHH-HHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHCCCCCEEECCCCCCHH----HHHHCCCCCCCC T ss_conf 9999888866999-99999997477377870699998799999999986996434113446645----654324554300 Q ss_pred ---------CCCCEECCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCCC----CHHHHH Q ss_conf ---------664101043556841899986222578998999744630---2688999999997521243----213799 Q gi|255764511|r 129 ---------KSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEK---QASRIAHAIVKRRQSAPFQ----TTQDLS 192 (341) Q Consensus 129 ---------~dgpLDMRmd~~~~tA~eiln~~s~~~L~~i~~~yGee~---~a~~IA~~Iv~~R~~~~i~----TT~eL~ 192 (341) ++.++...-|..+.+..-+-.+..+..|...+...+... .....+..+ ..-..+.+. ....+. T Consensus 109 ~~~~~l~~~k~~~i~~~~dL~g~~v~v~~gs~~~~~l~~~~~~~~~~~~iv~~~~~~~~~-~~l~~grvD~~i~~~~~~~ 187 (287) T 2vha_A 109 VVGTRLLTKKGGDIKDFADLKGKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSF-RTLESGRAVAFMMDDALLA 187 (287) T ss_dssp EEEEEEEEETTSSCCSGGGGTTCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHH-HHHHTTSCSEEEEEHHHHH T ss_pred CCCCEEEEECCCCCCCHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCHHHHHH-HHHHCCCCEEEEEEHHHHH T ss_conf 047257775489878987808981221378669999999888737896346522178999-9998699409996149999 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHH Q ss_conf 999988764312771257888888766513405789999998852024453389987255023899999986 Q gi|255764511|r 193 SLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFAS 264 (341) Q Consensus 193 ~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~ 264 (341) ..+...... .....-+.....+.+.|.|++.=.+|...+..+..-|...|.+ ++|.+++|.. T Consensus 188 ~~~~~~~~~-~~~~~~~~~~~~~~~~~av~k~~~~L~~~in~~l~~l~~~G~~---------~~I~~kwf~~ 249 (287) T 2vha_A 188 GERAKAKKP-DNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEA---------EKWFDKWFKN 249 (287) T ss_dssp HHHTTSSSG-GGEEEESCCSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHH---------HHHHHHHHHS T ss_pred HHHHHCCCC-CCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCHH---------HHHHHHHCCC T ss_conf 999965788-8679937877763189999489999999999999999978599---------9999997689 No 360 >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protein structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Probab=21.56 E-value=37 Score=13.79 Aligned_cols=68 Identities=21% Similarity=0.269 Sum_probs=43.4 Q ss_pred CCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHH---HHHHHHHH-----CCCCEEEEEC Q ss_conf 7688288----9999974890999809989999999985214885277113278---89876531-----2332478622 Q gi|255764511|r 44 TFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFS---QLQDYVPD-----KGVDGVVFDL 111 (341) Q Consensus 44 TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~---~i~~~l~~-----~~vdgIl~DL 111 (341) |=|.+|= ++.+++.+.+|+..|++++.+.... ++++.+...+..+.+ ++.+.+.. ..+|.++-.- T Consensus 12 TG~s~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~---~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA 88 (263) T 2a4k_A 12 TGAASGIGRAALDLFAREGASLVAVDREERLLAEAV---AALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGVAHFA 88 (263) T ss_dssp ESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEGG T ss_pred ECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECC T ss_conf 488868999999999987998999979889999999---97389579999848899999999999999829998999899 Q ss_pred CCH Q ss_conf 520 Q gi|255764511|r 112 GVS 114 (341) Q Consensus 112 GvS 114 (341) |++ T Consensus 89 G~~ 91 (263) T 2a4k_A 89 GVA 91 (263) T ss_dssp GGT T ss_pred CCC T ss_conf 899 No 361 >3i1j_A Oxidoreductase, short chain dehydrogenase/reductase family; dimer, mixed alpha-beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Probab=21.44 E-value=38 Score=13.77 Aligned_cols=78 Identities=23% Similarity=0.391 Sum_probs=47.5 Q ss_pred CCCEEEECCCCCCHHH----HHHHHHCCEEEEECCCHHHHHHHHHHHHHCC-CC--EEEEC---CCHHHHHHHHH----H Q ss_conf 8888998376882889----9999748909998099899999999852148-85--27711---32788987653----1 Q gi|255764511|r 36 PGKVILDATFGAGGYS----RSFCKMGSNVIALDRDPFAVSCGQETMRDYK-EQ--FSLFQ---ATFSQLQDYVP----D 101 (341) Q Consensus 36 ~~g~~iD~TlG~GGHS----~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~-~r--~~~~~---~~F~~i~~~l~----~ 101 (341) .|.+.| -|-|.+|== +.+++.+.+|+..||+++.+....+.++..+ .. +..+. .+.+.+.+... . T Consensus 13 ~gKval-ITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 91 (247) T 3i1j_A 13 KGRVIL-VTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE 91 (247) T ss_dssp TTCEEE-ESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH T ss_conf 969899-9684759999999999987998999989889999999999962788733998614436699999999999998 Q ss_pred -CCCCEEEEECCCH Q ss_conf -2332478622520 Q gi|255764511|r 102 -KGVDGVVFDLGVS 114 (341) Q Consensus 102 -~~vdgIl~DLGvS 114 (341) .++|.++-+-|+. T Consensus 92 ~g~iDilvnnAg~~ 105 (247) T 3i1j_A 92 FGRLDGLLHNASII 105 (247) T ss_dssp HSCCSEEEECCCCC T ss_pred HCCCCEEEECCCCC T ss_conf 39987899788657 No 362 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Probab=20.85 E-value=39 Score=13.69 Aligned_cols=81 Identities=10% Similarity=0.166 Sum_probs=42.2 Q ss_pred CCCCCHHHHHHHH---H--CCEEEE-ECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHH Q ss_conf 7688288999997---4--890999-809989999999985214885277113278898765312332478622520788 Q gi|255764511|r 44 TFGAGGYSRSFCK---M--GSNVIA-LDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQ 117 (341) Q Consensus 44 TlG~GGHS~~iL~---~--~~~lia-iDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~i~~~l~~~~vdgIl~DLGvSS~Q 117 (341) -.|.|.-.+..+. + +-+|+| .|+|++....+.+. |+ +. .|+++++++....+|+|+.=. ....| T Consensus 10 iIG~G~~~~~h~~~~~~~~~~~v~~v~d~~~~~~~~~~~~---~~--~~----~~~~~~~ll~~~~iD~V~i~t-p~~~h 79 (354) T 3db2_A 10 AIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR---YN--CA----GDATMEALLAREDVEMVIITV-PNDKH 79 (354) T ss_dssp EECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH---HT--CC----CCSSHHHHHHCSSCCEEEECS-CTTSH T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH---HC--CC----CCCCHHHHHCCCCCCEEEECC-CHHHH T ss_conf 9938399999999998589948999988999999999998---19--98----338999995699998899879-77888 Q ss_pred HHHH----HHCCCCCCCCCEE Q ss_conf 8765----4073445664101 Q gi|255764511|r 118 IDCG----DRGFSFQKSGPLD 134 (341) Q Consensus 118 ld~~----~RGFSf~~dgpLD 134 (341) .+-. +.|--.--+-|+- T Consensus 80 ~~~~~~al~~gk~V~~EKP~a 100 (354) T 3db2_A 80 AEVIEQCARSGKHIYVEKPIS 100 (354) T ss_dssp HHHHHHHHHTTCEEEEESSSC T ss_pred HHHHHHHHHCCCEEEEECCCC T ss_conf 888999997899799966864 No 363 >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Probab=20.84 E-value=5.1 Score=19.36 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=74.7 Q ss_pred HHHHHHHHHCCCCCCCCCEECCCCC-CCCCHHHHHHHCCHHHHHHHHHHHCCCC-HH-HHHHHHHHHHHHHCCCC----- Q ss_conf 7888765407344566410104355-6841899986222578998999744630-26-88999999997521243----- Q gi|255764511|r 115 SMQIDCGDRGFSFQKSGPLDMRMSC-SGISASDVVNQANVKDLTRILGILGEEK-QA-SRIAHAIVKRRQSAPFQ----- 186 (341) Q Consensus 115 S~Qld~~~RGFSf~~dgpLDMRmd~-~~~tA~eiln~~s~~~L~~i~~~yGee~-~a-~~IA~~Iv~~R~~~~i~----- 186 (341) ..|+.....|||+-- -+-=|+ .+.+..|+|.-+.++.=.+.+--|||.- +. +.+|.++...+.+||+. T Consensus 185 ~~~~~~~g~G~S~~V----siGnd~~~g~~~~D~L~~~~~Dp~Tk~Ivly~E~~g~~e~~~a~~~k~~~~~KPVVa~kaG 260 (334) T 3mwd_B 185 NNIISRTTDGVYEGV----AIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGIKEGRLTKPIVCWCIG 260 (334) T ss_dssp HHHHHHHSSCEEEEE----ECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHTTSCCSCEEEEEEC T ss_pred HHHHHHCCCCEEEEE----ECCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEE T ss_conf 999998299875898----0588875687499999986449998499998454783799999999855899988999973 Q ss_pred CHH-HHHHHHH----HHHHHHHCCCCHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEE Q ss_conf 213-7999999----88764312771257---888888766513405789999998852024453389 Q gi|255764511|r 187 TTQ-DLSSLIQ----KTVYFSKNNRIHPA---TRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLI 246 (341) Q Consensus 187 TT~-eL~~iI~----~~~~~~~~~k~hpa---tr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~ 246 (341) +|. ....-.. .+.-.. .. -.| ...|++--+.|=+-+++|-..|.+.++-|.+.|.+. T Consensus 261 rsa~~~~~~~~mgHtGAia~~--~~-gsa~~k~~al~~aGv~vv~~~~el~~~l~~~~~~l~~~G~i~ 325 (334) T 3mwd_B 261 TCATMFSSEVQFGHAGACANQ--AS-ETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDLVANGVIV 325 (334) T ss_dssp TTCC----------------C--GG-GSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHHHHTTSCC T ss_pred CCCCCCCCCCCCCCHHHCCCC--CC-CCHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHCCCCC T ss_conf 267778855555353120368--98-899999999998799687999999999999999886578656 No 364 >1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PFU-562899-001, PSI, protein structure initiative; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Probab=20.84 E-value=16 Score=16.22 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=35.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 32137999999887643127712578888887665134057899999988520244533899872 Q gi|255764511|r 186 QTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALKAGGLLIVVSF 250 (341) Q Consensus 186 ~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~El~~L~~~L~~~~~~L~~gGrl~VISF 250 (341) .|..+|.+.+..-.+.....-...+...-+.++++||++.-.. -..|+.|-.++++.- T Consensus 37 ~Tv~~Ll~~L~~~~p~~~~~l~~~~~~~~~~v~v~vN~~~~~~-------d~~L~dgDeVai~PP 94 (98) T 1vjk_A 37 ARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-------DEELKDGDVVGVFPP 94 (98) T ss_dssp CBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-------TCBCCTTCEEEEESC T ss_pred CCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCEEEEECCEECCC-------CCCCCCCCEEEEECC T ss_conf 9799999999986715788864110145664799988899699-------978099899999798 No 365 >2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A Probab=20.56 E-value=39 Score=13.65 Aligned_cols=114 Identities=8% Similarity=0.031 Sum_probs=53.2 Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC--HH Q ss_conf 22578998999744630268899999999752--124321379999998876431277125788888876651340--57 Q gi|255764511|r 151 ANVKDLTRILGILGEEKQASRIAHAIVKRRQS--APFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNE--IE 226 (341) Q Consensus 151 ~s~~~L~~i~~~yGee~~a~~IA~~Iv~~R~~--~~i~TT~eL~~iI~~~~~~~~~~k~hpatr~FQALRI~VN~E--l~ 226 (341) .+.+++..++..++....+..++..|...-.. ....+-.++...+....+. ....-+-.+|+.+-..-+.. .+ T Consensus 51 i~~~ef~~~l~~~~~~~~~~~~~~~lf~~~D~n~dG~I~f~EFl~~l~~~~~~---~~~~kl~~~F~~~D~d~~G~I~~~ 127 (207) T 2d8n_A 51 ITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAG---KTNQKLEWAFSLYDVDGNGTISKN 127 (207) T ss_dssp EEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCSEEEHHHHHHHHHHHSCS---SSSTTHHHHHHHHCTTCSSEECHH T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCC---CHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 97999999999857888858999999998557999767279999998863146---447789988750147998959799 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHCC Q ss_conf 89999998852024453389987255023899999986417 Q gi|255764511|r 227 ELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSG 267 (341) Q Consensus 227 ~L~~~L~~~~~~L~~gGrl~VISFHSLEDRiVK~ff~~~~~ 267 (341) ++..++......+.+.+.-.+..-....+..|...|+.... T Consensus 128 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~D~ 168 (207) T 2d8n_A 128 EVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGK 168 (207) T ss_dssp HHHHHHHHHHHHSCHHHHHTSCTTTSSHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 99999999976446465302550020089999999999679 No 366 >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3lb0_A* 3l2i_A* 3nnt_A* 3m7w_A* 1gqn_A 1l9w_A* 1qfe_A* Probab=20.46 E-value=35 Score=13.96 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=10.4 Q ss_pred ECCCHHHHHHHHHHHHHC-CCCEEEECCCH Q ss_conf 809989999999985214-88527711327 Q gi|255764511|r 64 LDRDPFAVSCGQETMRDY-KEQFSLFQATF 92 (341) Q Consensus 64 iDrD~~ai~~a~~~l~~~-~~r~~~~~~~F 92 (341) .+++.+.+....++.... .+-+.+.-+-| T Consensus 47 ~~~t~~e~l~~a~~~~~~~aDlvE~RlD~l 76 (276) T 3o1n_A 47 MGKTITDVKSEALAYREADFDILEWRVDHF 76 (276) T ss_dssp CCSSHHHHHHHHHHHTTSCCSEEEEEGGGC T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 889999999999986017999899976235 No 367 >2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Probab=20.24 E-value=40 Score=13.61 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=18.5 Q ss_pred HHHHHCCHHHHHHHHHHHCCCCHH Q ss_conf 998622257899899974463026 Q gi|255764511|r 146 DVVNQANVKDLTRILGILGEEKQA 169 (341) Q Consensus 146 eiln~~s~~~L~~i~~~yGee~~a 169 (341) .+-+..++++|.++|..||+...- T Consensus 34 gL~~~~te~~L~~~F~~~G~i~~v 57 (114) T 2cq2_A 34 GLGNGVSRNQLLPVLEKCGLVDAL 57 (114) T ss_dssp TGGGTCCHHHHHHHHHHHSCEEEE T ss_pred CCCCCCCHHHHHHHHHHCCCEEEE T ss_conf 989998899999999852992799 No 368 >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Probab=20.22 E-value=40 Score=13.61 Aligned_cols=74 Identities=24% Similarity=0.370 Sum_probs=45.2 Q ss_pred CCCEEEECCCCCCHH----HHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHH---HHHHHHH-----CC Q ss_conf 888899837688288----99999748909998099899999999852148852771132788---9876531-----23 Q gi|255764511|r 36 PGKVILDATFGAGGY----SRSFCKMGSNVIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQ---LQDYVPD-----KG 103 (341) Q Consensus 36 ~~g~~iD~TlG~GGH----S~~iL~~~~~liaiDrD~~ai~~a~~~l~~~~~r~~~~~~~F~~---i~~~l~~-----~~ 103 (341) .|.+.| -|=|.+|= ++.+++.+.+|+..|++++.++...+.+ .+..++..+.++ +...... .+ T Consensus 8 ~GKval-ITGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~----~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 82 (270) T 1yde_A 8 AGKVVV-VTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----PGAVFILCDVTQEDDVKTLVSETIRRFGR 82 (270) T ss_dssp TTCEEE-EETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----TTEEEEECCTTSHHHHHHHHHHHHHHHSC T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 998899-9488888999999999987999999979989999999866----99779982079999999999999997499 Q ss_pred CCEEEEECCCH Q ss_conf 32478622520 Q gi|255764511|r 104 VDGVVFDLGVS 114 (341) Q Consensus 104 vdgIl~DLGvS 114 (341) +|.++-.-|+. T Consensus 83 iDiLVnnAG~~ 93 (270) T 1yde_A 83 LDCVVNNAGHH 93 (270) T ss_dssp CCEEEECCCCC T ss_pred CCEEEECCCCC T ss_conf 98899899899 Done!