BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] (341 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764511|ref|YP_003065518.2| S-adenosyl-methyltransferase MraW [Candidatus Liberibacter asiaticus str. psy62] Length = 341 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/341 (100%), Positives = 341/341 (100%) Query: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN Sbjct: 1 MESKSCKTMSSAIHHTIGDHVPVLLEKVIALLNPAPGKVILDATFGAGGYSRSFCKMGSN 60 Query: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC Sbjct: 61 VIALDRDPFAVSCGQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDC 120 Query: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR Sbjct: 121 GDRGFSFQKSGPLDMRMSCSGISASDVVNQANVKDLTRILGILGEEKQASRIAHAIVKRR 180 Query: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK Sbjct: 181 QSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFVNNEIEELAQGLRSAEKALK 240 Query: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV Sbjct: 241 AGGLLIVVSFHSLEDRLVKKFFASRSGKVMAVRHMIPSNAHPAVFQSITKKVVVPTQEDV 300 Query: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG Sbjct: 301 AFNRRSRSAKLRAGMRTVERSIEDDSFVHLPRLPTLSQFRG 341 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 25.8 bits (55), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Query: 225 IEELAQGLRSAEKALKAGGLLIVVSFHSLEDRLVKKFFASRSGK 268 I+E Q L+ EKA+ AGGL V+S E R + RSG+ Sbjct: 534 IQEEVQSLK--EKAIVAGGLY-VISTERHESRRIDNQLRGRSGR 574 >gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 24.3 bits (51), Expect = 3.1, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 19/45 (42%) Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 +KRR+ PF DL + NN + A R +R FV Sbjct: 133 IKRREDIPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGLIREFV 177 >gi|254781197|ref|YP_003065610.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 19/45 (42%) Query: 177 VKRRQSAPFQTTQDLSSLIQKTVYFSKNNRIHPATRSFQALRIFV 221 +KRR+ PF DL + NN + A R +R FV Sbjct: 133 IKRREDTPFNLDPDLFGKNHSYSFTIVNNHLPTACRQVGFIREFV 177 >gi|254780293|ref|YP_003064706.1| 30S ribosomal protein S9 [Candidatus Liberibacter asiaticus str. psy62] Length = 170 Score = 24.3 bits (51), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 12/78 (15%) Query: 146 DVVNQANVKDLTRILGILGEEKQASRIAHAIVKRRQSAPFQTTQDLSSLIQKTVYFSKNN 205 + V+Q N+ D+ + G QAS I H + K FQ DL I+K + ++++ Sbjct: 93 NTVSQDNMYDVFATVSGGGLSGQASAICHGVAK--ALTYFQP--DLRPQIKKGGFLTRDS 148 Query: 206 RI--------HPATRSFQ 215 RI A RSFQ Sbjct: 149 RIVERKKYGKAKARRSFQ 166 >gi|254780174|ref|YP_003064587.1| putative oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 78 Score = 23.5 bits (49), Expect = 5.3, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 74 GQETMRDYKEQFSLFQATFSQLQDYVPDKGVDGVVFDLGVSSMQIDCGDRGFSFQKSGP 132 G + +D +Q LF + + Y D G+ V S + R FS+ + P Sbjct: 17 GYTSSKDTLQQVKLFFPSLEAAEKYASDHGIQYCVIPSCKESQKELSYQRNFSYDRLEP 75 >gi|254780466|ref|YP_003064879.1| putative modification methylase [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 23.1 bits (48), Expect = 6.5, Method: Compositional matrix adjust. Identities = 8/13 (61%), Positives = 10/13 (76%) Query: 36 PGKVILDATFGAG 48 PG +ILD FG+G Sbjct: 223 PGDIILDPFFGSG 235 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.134 0.377 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 199,468 Number of Sequences: 1233 Number of extensions: 7676 Number of successful extensions: 32 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 8 length of query: 341 length of database: 328,796 effective HSP length: 75 effective length of query: 266 effective length of database: 236,321 effective search space: 62861386 effective search space used: 62861386 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)