HHsearch alignment for GI: 255764513 and conserved domain: COG0143
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=98.61 E-value=6.8e-07 Score=67.12 Aligned_cols=292 Identities=17% Similarity=0.260 Sum_probs=157.5
Q ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHH
Q ss_conf 877056348433887850159999999999997--18849999704866----------------638867999999998
Q gi|255764513|r 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKR--TGGKFILRIEDTDS----------------KRSTLESENAVMQSL 65 (492)
Q Consensus 4 ~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~--~~g~f~lRieDtd~----------------~R~~~~~~~~i~~~l 65 (492)
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~ 84 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELF 84 (558)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 73899558988999864136788878999999998269758999514787778899999859998999999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEE-------CCCCHHHHHHHHHHHHHHHCCCC------
Q ss_conf 86589888676558876763232628999999999998898245-------14889997766887664310002------
Q gi|255764513|r 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFR-------CFCSTERLEEMRRAQRKRNIPSR------ 132 (492)
Q Consensus 66 ~wlgl~~De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~-------c~~t~eel~~~r~~~~~~~~~~~------ 132 (492)
T Consensus 85 ~~l~IsfD~-------F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl~d----r~v~g~cp~cg~~~a 153 (558)
T COG0143 85 KALNISFDN-------FIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCERFLPD----RYVEGTCPKCGGEDA 153 (558)
T ss_pred HHHCCCCCE-------ECCCCCHHHHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCCCC----HHEECCCCCCCCCCC
T ss_conf 980985430-------016897779999999999999789873144356473543564562----102055898675345
Q ss_pred CCCC---C-CCCCHHH--HHHHHHCCCCCEEE------EEECCCC-----------EEECCCCCCCCE-ECCCCCCCCCC
Q ss_conf 3665---5-5788333--00112025774078------8622431-----------143047513402-13643235641
Q gi|255764513|r 133 YDGH---C-LKLSSQE--IERLSQEQKKHVVR------LTVPNQG-----------SCVFQDKVYGEM-EIPWNAVDMQV 188 (492)
Q Consensus 133 Y~~~---~-r~l~~~e--~~~~~~~g~~~~iR------~k~p~~~-----------~~~~~D~i~G~~-~~~~~~~~D~v 188 (492)
T Consensus 154 ~GD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~ 233 (558)
T COG0143 154 RGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPANRRNEVLNFLKEGLKDLS 233 (558)
T ss_pred CCCHHHHCCCCCCCHHCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 76434322675792121798168647976433540599887986999999997396545886899999999976686643
Q ss_pred EECCC---CCH---------------HHHHHHHHHHH----------------HHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 00045---324---------------89867887644----------------444443112235430247889999985
Q gi|255764513|r 189 LLKSD---GMP---------------TYHLANVIDDH----------------LMKITHVARGEEWISSVPKHILLYQYF 234 (492)
Q Consensus 189 i~r~d---g~p---------------tY~~a~vvDD~----------------~m~ithviRg~d~~~~t~~q~~l~~al 234 (492)
T Consensus 234 IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e~vhfI-GKD---ii~FHav~wPam 309 (558)
T COG0143 234 ITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTELVHFI-GKD---IIRFHAVYWPAM 309 (558)
T ss_pred EECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHHCCCCHHHHHHHCCCCCCEEEEEE-CCC---CCCCHHHHHHHH
T ss_conf 1458988772579999877999634488999995412105876789863778884599996-245---674324578999
Q ss_pred ----HHCCCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHH
Q ss_conf ----100000101455531101322122343-302456662977377998998506766655301101467776520211
Q gi|255764513|r 235 ----NFPIPEFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHH 309 (492)
Q Consensus 235 ----~~~~p~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~ 309 (492)
T Consensus 310 L~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~-~~~D~lRYyL~~~~--p-~~~D~dFs~~~f~~rvN~dL 385 (558)
T COG0143 310 LMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQ-YGVDALRYYLAREL--P-EGSDGDFSWEDFVERVNADL 385 (558)
T ss_pred HHHCCCCCCCEEEEEEEEEECCCCCCCCCCCEEEHHHHHHH-CCCHHHHHHHHHHC--C-CCCCCCCCHHHHHHHHHHHH
T ss_conf 97389998877984013997794124428818717999987-48238579888737--7-88888889999999998998
Q ss_pred CCCCC
Q ss_conf 37554
Q gi|255764513|r 310 LSKAG 314 (492)
Q Consensus 310 I~Ks~ 314 (492)
T Consensus 386 ~n~lg 390 (558)
T COG0143 386 ANKLG 390 (558)
T ss_pred HHHHH
T ss_conf 87888