HHsearch alignment for GI: 255764513 and conserved domain: COG0215
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=98.67 E-value=1.4e-07 Score=71.71 Aligned_cols=230 Identities=20% Similarity=0.176 Sum_probs=133.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHH---HHHHCCC--EEEEEECCCCC---CC----------CCHHHHHHHHHHHHHCCCC-C
Q ss_conf 843388785015999999999---9997188--49999704866---63----------8867999999998865898-8
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYL---IAKRTGG--KFILRIEDTDS---KR----------STLESENAVMQSLKWCGLN-W 72 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l---~a~~~~g--~f~lRieDtd~---~R----------~~~~~~~~i~~~l~wlgl~-~ 72 (492)
T Consensus 29 GpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p 108 (464)
T COG0215 29 GPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMDALNVLPP 108 (464)
T ss_pred CCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88257764456676520299999999982970799964666638999999982999999999999999999998299998
Q ss_pred CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 86765588767632326289999999999988982451488999776688766431000236655578833300112025
Q gi|255764513|r 73 DEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQ 152 (492)
Q Consensus 73 De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g 152 (492)
T Consensus 109 ~~~P---------raTe~I~~iI~~I~~Li~kG~AY~~~~G~--------VYFdv~~f~~YG~LS~~~~le~----l~~g 167 (464)
T COG0215 109 DIEP---------RATEHIDEIIEFIEKLIEKGYAYVADDGD--------VYFDVSKFKDYGKLSGRDSLEE----LQAG 167 (464)
T ss_pred CCCC---------CHHHCHHHHHHHHHHHHHCCCEEEECCCC--------EEEECCCHHHHHHHCCCCCHHH----HHHC
T ss_conf 6557---------47647999999999999779658846982--------8995243031786528987667----7513
Q ss_pred CCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECC-------------CCCHHHHHHHHH-HHHHHHHHHHHC--
Q ss_conf 7740788622431143047513402136432356410004-------------532489867887-644444443112--
Q gi|255764513|r 153 KKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKS-------------DGMPTYHLANVI-DDHLMKITHVAR-- 216 (492)
Q Consensus 153 ~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~-------------dg~ptY~~a~vv-DD~~m~ithviR-- 216 (492)
T Consensus 168 a----r~~~----------------~~~Krnp~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgG 227 (464)
T COG0215 168 A----RVEV----------------DEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGG 227 (464)
T ss_pred C----CCCC----------------CCCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECC
T ss_conf 5----4566----------------5455880011244258999988779988999944688999999870897512468
Q ss_pred CCC----CCCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 235----43024788999998510-0--000101455531101322122343-30245666297737799899850676
Q gi|255764513|r 217 GEE----WISSVPKHILLYQYFNF-P--IPEFIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFVH 287 (492)
Q Consensus 217 g~d----~~~~t~~q~~l~~al~~-~--~p~f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGws 287 (492)
T Consensus 228 G~DLiFPHHENEiAQs---ea~~g~~~~a~yWmH~G~l-~i~geKMSKSLGNfiti~d~l~~-~~p~~lR~~lls~HYR 301 (464)
T COG0215 228 GSDLIFPHHENEIAQS---EAATGVKPFAKYWMHNGFL-NIDGEKMSKSLGNFITVRDLLKK-YDPEVLRLFLLSSHYR 301 (464)
T ss_pred CCCCCCCCCCCHHHHH---HHHHCCCCCEEEEEECCEE-EECCCCCCCCCCCEEEHHHHHHH-CCHHHHHHHHHHHHHC
T ss_conf 5025588863089998---7642997600586882645-24672765235776679999865-4879999999987757