HHsearch alignment for GI: 255764513 and conserved domain: cd00395
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.56 E-value=6.3e-06 Score=60.57 Aligned_cols=201 Identities=21% Similarity=0.236 Sum_probs=120.3
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-----CC---CCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 056348433887850159999999999997188499997048-----66---6388679999999988658988867655
Q gi|255764513|r 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDT-----DS---KRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 7 v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDt-----d~---~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
T Consensus 3 vy~G~~--PTg~lHlG~~v~~~~~~~~q~~-g~~~~~~iaD~~a~~~d~~~~~~~i~~~~~~~~~~~~a~g~d~~k~--- 76 (274)
T cd00395 3 VYSGID--PTGSLHLGHYVGAIKLKVLQQA-GHEVIILIADLHALTGDPSLDPEEIRKNAREIAKQILALGLDPEKA--- 76 (274)
T ss_pred EEEEEC--CCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHC---
T ss_conf 999058--8871468999999999999988-9988999907711437999999999999999999999977994772---
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR 158 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR 158 (492)
T Consensus 77 ----~i~~~S~~~~~-~~~~~l~~~l----~~~~~~~~l~~~--~--------~~------------k~r~~~~~~---- 121 (274)
T cd00395 77 ----TIVFQSDWLLK-LEHLELLRLL----GKHVTVGRLLRM--D--------GF------------KDRLAEEEG---- 121 (274)
T ss_pred ----EEEEHHHHCCC-HHHHHHHHHH----HCCCCHHHHHHH--H--------HH------------HHHHHCCCC----
T ss_conf ----78632310772-5699999999----673768899733--6--------78------------877623689----
Q ss_pred EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHC
Q ss_conf 8622431143047513402136432356410004532489867887644444443112235430247889999985-100
Q gi|255764513|r 159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF-NFP 237 (492)
Q Consensus 159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al-~~~ 237 (492)
T Consensus 122 --------~~-----~~~~~-------------------YP~lQaaDil~~~~~~v~~G~DQ~~~~~l~Rdia~k~~~~~ 169 (274)
T cd00395 122 --------IS-----LGEFT-------------------YPVLQAADILLLKADLVPGGSDQDPHIELGRDLARRFNGFK 169 (274)
T ss_pred --------CC-----CCEEE-------------------CCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf --------77-----00232-------------------43076531776506545556117999999999999944999
Q ss_pred CCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 000101455531101-32212234330245666297737799899850
Q gi|255764513|r 238 IPEFIHLPLIKNPDK-SKLSKRRNPTSISYYSAMGYLPEALINFLALL 284 (492)
Q Consensus 238 ~p~f~H~pli~~~~g-~klSKR~~~~~i~~~~~~GylPeAilNyLalL 284 (492)
T Consensus 170 ~p~~l~~~~l~~l~G~~KMSKS~~ns~i-~l~D---sp~~i~~KI~~a 213 (274)
T cd00395 170 KPVALTSPLLTGLDGGKKMSKSDGNAII-FLLD---SPEEIYKKIMKA 213 (274)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCEE-ECCC---CHHHHHHHHEEC
T ss_conf 9868723774468997674578998446-5469---999999987224