HHsearch alignment for GI: 255764513 and conserved domain: cd00805
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.81 E-value=0.00016 Score=50.95 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHH
Q ss_conf 48986788764444444311223543024788999998510000010145553110132212234330245666297737
Q gi|255764513|r 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPE 275 (492)
Q Consensus 196 ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPe 275 (492)
T Consensus 136 f~YPvlQAaDil~~~~~~vpvG~DQ~~hiel~Rdia~r~n~~~~~~l~~pll~g~dG~KMSKS~~N~i~i~l~---dsp~ 212 (268)
T cd00805 136 FLYPLLQAYDFVYLDVDIQLGGSDQRGNITLGRDLIRRLGYKKVVGLTTPLLTGLDGGKMSKSEGNAIWDGLL---DSPY 212 (268)
T ss_pred HHHHHHHHCCHHHHCCCCEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECEEECCCCCCCCCCCCCCCCCCCC---CCHH
T ss_conf 5589998601867137714606008999999999999828976145531100089987446789995013121---5558
Q ss_pred HHHHHHH
Q ss_conf 7998998
Q gi|255764513|r 276 ALINFLA 282 (492)
Q Consensus 276 AilNyLa 282 (492)
T Consensus 213 ~i~~ki~ 219 (268)
T cd00805 213 DFYQKIR 219 (268)
T ss_pred HHHHHEE
T ss_conf 8861440