HHsearch alignment for GI: 255764513 and conserved domain: cd00808
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=0 Score=707.39 Aligned_cols=239 Identities=63% Similarity=1.066 Sum_probs=233.8
Q ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE
Q ss_conf 70563484338878501599999999999971884999970486663886799999999886589888676558876763
Q gi|255764513|r 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGPY 85 (492)
Q Consensus 6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p~ 85 (492)
T Consensus 1 ~V~tRFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~f~LRieDtD~~R~~~e~~~~I~~dL~wLGl~wDe~~~~~~~~~py 80 (239)
T cd00808 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKKHGGKFILRIEDTDQERSVEEAEEAILEDLKWLGIDWDEGPDVGGPYGPY 80 (239)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 91186088989853389999999999999981998999845689887876999999999998188877464668888780
Q ss_pred ECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 23262899999999999889824514889997766887664310002366555788333001120257740788622431
Q gi|255764513|r 86 RQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQG 165 (492)
Q Consensus 86 ~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~~ 165 (492)
T Consensus 81 ~QS~r~~~Y~~~~~~L~~~g------------------------------------------------------------ 100 (239)
T cd00808 81 RQSERLDIYKKYAEQLLEEG------------------------------------------------------------ 100 (239)
T ss_pred CCCCCHHHHHHHHHHHHHCC------------------------------------------------------------
T ss_conf 42107999999999767659------------------------------------------------------------
Q ss_pred EEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 14304751340213643235641000453248986788764444444311223543024788999998510000010145
Q gi|255764513|r 166 SCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLP 245 (492)
Q Consensus 166 ~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~p 245 (492)
T Consensus 101 ---------------------------DG~PtY~fA~vvDD~~~~IThviRg~D~~~~t~~q~~l~~~Lg~~~P~f~Hlp 153 (239)
T cd00808 101 ---------------------------DGFPTYHFANVVDDHLMGITHVIRGEEHLSSTPKQILLYEALGWEPPKFAHLP 153 (239)
T ss_pred ---------------------------CCCCCCCCCCEECCCCCCCCEEEECHHHHCCCHHHHHHHHHCCCCCCEEECCC
T ss_conf ---------------------------98842343516426547998897152410577999999996489998032662
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 55311013221223433024566629773779989985067666553011014677765202113755442015655664
Q gi|255764513|r 246 LIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDWL 325 (492)
Q Consensus 246 li~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~wl 325 (492)
T Consensus 154 li~~~~g~kLSKR~~~~si~~~r~~G~~Peai~n~l~~lG~s~~-~~~e~~~~~eli~~Fdl~~i~rs~a~fD~~kL~~l 232 (239)
T cd00808 154 LILNPDGKKLSKRHGDTSISDYREEGYLPEALLNYLALLGWSPP-DGEEFFTLEELIELFDLERVSKSPAIFDPEKLDWL 232 (239)
T ss_pred CEECCCCCCCCCCCCHHCHHHHHHCCCCHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHCCHHHCCCCCCCCCHHHHHHH
T ss_conf 42689989776708721699999869987999999999759998-76443899999974495128788871589999999
Q ss_pred HHHHHHC
Q ss_conf 3555512
Q gi|255764513|r 326 NGRWIRE 332 (492)
Q Consensus 326 N~qyIr~ 332 (492)
T Consensus 233 N~~~l~~ 239 (239)
T cd00808 233 NGQYIRE 239 (239)
T ss_pred HHHHHCC
T ss_conf 9998259