HHsearch alignment for GI: 255764513 and conserved domain: cd00814

>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.33  E-value=2.3e-11  Score=97.53  Aligned_cols=249  Identities=20%  Similarity=0.257  Sum_probs=129.1

Q ss_pred             EEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCCCC----------------CCCCHHHHHHHHHHHHHCC
Q ss_conf             56348433887850159999999999997--18849999704866----------------6388679999999988658
Q gi|255764513|r    8 RVRIAPSPTGEPHIGTAYTALFNYLIAKR--TGGKFILRIEDTDS----------------KRSTLESENAVMQSLKWCG   69 (492)
Q Consensus         8 ~~RfaPsPtG~lH~G~~rtal~n~l~a~~--~~g~f~lRieDtd~----------------~R~~~~~~~~i~~~l~wlg   69 (492)
T Consensus         4 v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~kA~~~g~~~~el~~~y~~~~~~~~~~L~   83 (319)
T cd00814           4 ITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKELFKWLN   83 (319)
T ss_pred             EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             96899878898553306889999999999996599569968777870899999998399879999999999999999849


Q ss_pred             CCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEE-----CCCCHH---------------HHHHHHHHHH---H
Q ss_conf             9888676558876763232628999999999998898245-----148899---------------9776688766---4
Q gi|255764513|r   70 LNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFR-----CFCSTE---------------RLEEMRRAQR---K  126 (492)
Q Consensus        70 l~~De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~-----c~~t~e---------------el~~~r~~~~---~  126 (492)
T Consensus        84 I~~d~~~r~-------~~~~~~~~v~~~i~~L~~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~  156 (319)
T cd00814          84 ISFDYFGRT-------TSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLE  156 (319)
T ss_pred             CCCCCCCCC-------CCHHHHHHHHHHHHHHHHCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHH
T ss_conf             987867667-------8806899999999999978988884102636588764564664226378788997899999996


Q ss_pred             HHCCCCCCCCCCCCCHHHHHHHHHCCCCC--------EEEEEECCC--C-EEECCCCCCCCEECCCCCCCCCCEECCCCC
Q ss_conf             31000236655578833300112025774--------078862243--1-143047513402136432356410004532
Q gi|255764513|r  127 RNIPSRYDGHCLKLSSQEIERLSQEQKKH--------VVRLTVPNQ--G-SCVFQDKVYGEMEIPWNAVDMQVLLKSDGM  195 (492)
Q Consensus       127 ~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~--------~iR~k~p~~--~-~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~  195 (492)
T Consensus       157 ~~~~~~~~----~~~~~~~~~~~~~~~~d~~isR~~~~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~------~~~~  226 (319)
T cd00814         157 ENPDFIWP----ENARNEVLSWLKEGLKDLSITRDLFKWGIPVPLDPDKVIYVWFDALIGYISATGYYTD------EWGN  226 (319)
T ss_pred             CCCCCCCC----HHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCC------CCCC
T ss_conf             09876468----0577888776543777200103555458988898885430021012340001466666------5687


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH----HHHHHHCCCHHH-HHHHHHHHHCCCCCCCCC-CCCHHHHHH
Q ss_conf             48986788764444444311223543024788999----998510000010-145553110132212234-330245666
Q gi|255764513|r  196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILL----YQYFNFPIPEFI-HLPLIKNPDKSKLSKRRN-PTSISYYSA  269 (492)
Q Consensus       196 ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l----~~al~~~~p~f~-H~pli~~~~g~klSKR~~-~~~i~~~~~  269 (492)
T Consensus       227 ~~~~~~-----~~~~~ih~~-G~Di---~~~H~~~~~a~~~a~~~~~~~~~~~~g~-l~~~GeKMSKSlGN~i~~~dll~  296 (319)
T cd00814         227 SWWWND-----PWPELVHFI-GKDI---VPFHAIYWPAMLLGAGLPLPTRIFAHGY-LTVEGKKMSKSRGNVVDPDDLLE  296 (319)
T ss_pred             CCCCCC-----CCCCEEEEE-CCCC---CCHHHHHHHHHHHHCCCCCCCEEEECCE-EEECCEECCCCCCCCCCHHHHHH
T ss_conf             644456-----884126784-4764---3188878999998569987868887023-99899463772997445999998


Q ss_pred             CCCCHHHHHHHHHHC
Q ss_conf             297737799899850
Q gi|255764513|r  270 MGYLPEALINFLALL  284 (492)
Q Consensus       270 ~GylPeAilNyLalL  284 (492)
T Consensus       297 ~-~~~d~lR~~lls~  310 (319)
T cd00814         297 R-YGADALRYYLLRE  310 (319)
T ss_pred             H-CCCHHEHHHHHCC
T ss_conf             7-7913566877616