HHsearch results for GI: 255764513 and protein with PDBid: 1iq0_A
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=99.10 E-value=2.2e-10 Score=89.36 Aligned_cols=293 Identities=21% Similarity=0.211 Sum_probs=136.4
Q ss_pred CCEEEECC-CCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 77056348-43388785015999999999999--718849999---7048666388679999999988658988867655
Q gi|255764513|r 5 SKVRVRIA-PSPTGEPHIGTAYTALFNYLIAK--RTGGKFILR---IEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~Rfa-PsPtG~lH~G~~rtal~n~l~a~--~~~g~f~lR---ieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
.+|.+-|. |.|||+||+||+|+|++-.-+|| ..-|-=+.| |.|.-.. ...++..+...|..++.....
T Consensus 103 ~~v~VEf~SpNp~k~lHvGHlRstiiGd~laril~~~G~~V~r~nyigD~G~Q------i~~~~~~~~~~~~~~~~~~~~ 176 (592)
T 1iq0_A 103 GVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQ------AAETLFALRHYGLTWDGKEKY 176 (592)
T ss_dssp EEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTSHH------HHHHHHHHHHTTCCCCSSSCH
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHH------HHHHHHHHHHHCCCCCCCHHH
T ss_conf 77999845898999864012787898899999997079987688752887335------379999999856432332245
Q ss_pred CCCCCCEE-------CCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHH--HCCCCCCCCCCC--C----CHH
Q ss_conf 88767632-------32628999999999998898245148899977668876643--100023665557--8----833
Q gi|255764513|r 79 GGAYGPYR-------QSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKR--NIPSRYDGHCLK--L----SSQ 143 (492)
Q Consensus 79 ~g~~~p~~-------QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~--~~~~~Y~~~~r~--l----~~~ 143 (492)
..-++-|+ ...+........-.-.+.+ ...++.........+. .....||..... + .-+
T Consensus 177 ~~~~~~~y~~~~~~~~~~~~~~~~~e~~~~~e~~------~~~e~~~~~l~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~ 250 (592)
T 1iq0_A 177 DHFAGRAYVRLHQDPEYERLQPAIEEVLHALERG------ELREEVNRILLAQMATMHALNARYDLLVWESDIVRAGLLQ 250 (592)
T ss_dssp HHHHHHHHHHHHHCTTTGGGHHHHHHHHHHHHTT------TTHHHHHHHHHHHHHHHHHTTCCCSEEEEHHHHHHTTHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHCCEECCCCEECCCCCCCCHH
T ss_conf 6650203666523467778887799999998776------7999999999988878987454412032013322376338
Q ss_pred HHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCEECCC------CCCCCCCEECCCCCHHHHHHHHHHHHHHHH----HH
Q ss_conf 30011202577407886224311430475134021364------323564100045324898678876444444----43
Q gi|255764513|r 144 EIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPW------NAVDMQVLLKSDGMPTYHLANVIDDHLMKI----TH 213 (492)
Q Consensus 144 e~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~------~~~~D~vi~r~dg~ptY~~a~vvDD~~m~i----th 213 (492)
.....+.+ ...+. +. ..+ ...|...++. ....|+|++|+||+|||...-+-- |..++ +.
T Consensus 251 ~~~~~l~~-~~~~~--~~-~~~------~~~g~~~~~~~~~~~~~~~~~~vl~rsdG~~tY~~~DiA~-~~~k~~~~~~~ 319 (592)
T 1iq0_A 251 KALALLEQ-SPHVF--RP-REG------KYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAF-QFWKMGILEGL 319 (592)
T ss_dssp HHHHHHTT-STTEE--CC-SSS------TTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHH-HHHHTTSSCCC
T ss_pred HHHHHHHH-CCCEE--EC-CCC------CCCEEEEEECCCEECCCCCCEEEEECCCCCEEEECHHHHH-HHHHHCCCCCC
T ss_conf 88899986-23023--12-455------6542799832302115777605898268955775203788-88850442110
Q ss_pred HHCCCCC----------------------CCH------HHHHHHHH---HHHHHCC--CHHHHHH--HHHHHHCCCCCCC
Q ss_conf 1122354----------------------302------47889999---9851000--0010145--5531101322122
Q gi|255764513|r 214 VARGEEW----------------------ISS------VPKHILLY---QYFNFPI--PEFIHLP--LIKNPDKSKLSKR 258 (492)
Q Consensus 214 viRg~d~----------------------~~~------t~~q~~l~---~al~~~~--p~f~H~p--li~~~~g~klSKR 258 (492)
.+|+.|+ +-+ ..-|.+++ +.+|++. -+.-|++ ++. .+|+|||+|
T Consensus 320 ~~~~~~~~~~~~~d~~~~~~~~~~~~~d~~I~vvd~~Q~~h~~~v~~~l~~~g~~~~~~~~~hi~~g~v~-~~g~kMStR 398 (592)
T 1iq0_A 320 RFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LEGRQMSGR 398 (592)
T ss_dssp EEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ETTBCSCC-
T ss_pred CEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCEEEEEEEEEE-CCCEEEECC
T ss_conf 0002233423777776542020012200345444024203899999999985787133110246678997-276344314
Q ss_pred CCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHH-----HHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 343-30245666297737799899850676665530110146-----7776520211375544201565566435
Q gi|255764513|r 259 RNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQ-----QLIHHFDLHHLSKAGAVFDKQKLDWLNG 327 (492)
Q Consensus 259 ~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~-----eli~~FdL~~I~Ks~A~FD~eKL~wlN~ 327 (492)
.|. +.+.++.++. .+....-+..-+.+. .+.| ... ..+..|+|++=..++-.||+++..-+++
T Consensus 399 ~G~~i~l~dll~e~--~~~~~~~~~~~~~~~--~~~~--~~a~~vg~~airy~~L~~~~~~~~~Fd~~~~l~~~g 467 (592)
T 1iq0_A 399 KGLAVSVDEVLEEA--TRRARAIVEEKNPDH--PDKE--EAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEG 467 (592)
T ss_dssp ---CCBHHHHHHHH--HHHHHHHHHHHCTTC--SCHH--HHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSS
T ss_pred CCCEEEHHHHHHHH--HHHHHHHHHHCCCCC--HHHH--HHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf 77546899999999--999999876402320--3456--799885320368763215765566769999965328