HHsearch results for GI: 255764513 and protein with PDBid: 1li5_A
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.21 E-value=4.8e-10 Score=87.04 Aligned_cols=225 Identities=17% Similarity=0.133 Sum_probs=129.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-----HCCCEEEEEECCCCCC-------C------CCHHHHHHHHHHHHHCCCCCC
Q ss_conf 843388785015999999999999-----7188499997048666-------3------886799999999886589888
Q gi|255764513|r 12 APSPTGEPHIGTAYTALFNYLIAK-----RTGGKFILRIEDTDSK-------R------STLESENAVMQSLKWCGLNWD 73 (492)
Q Consensus 12 aPsPtG~lH~G~~rtal~n~l~a~-----~~~g~f~lRieDtd~~-------R------~~~~~~~~i~~~l~wlgl~~D 73 (492)
.|.|-++.||||+||+++.-+++| -..-.|+.-|.|.|.+ . ....+.+...++++-||+..+
T Consensus 29 GpTvy~~~HiGhar~~v~~D~l~R~l~~~G~~V~~v~nitDiddKi~~~A~~~g~~~~e~~~~~~~~f~~~~~~L~i~~~ 108 (461)
T 1li5_A 29 GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRP 108 (461)
T ss_dssp CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 88578984410140299999999999975995189974161238999999984959999999999999999999579999
Q ss_pred CCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECC-----CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 67655887676323262899999999999889824514-----8899977668876643100023665557883330011
Q gi|255764513|r 74 EGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCF-----CSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERL 148 (492)
Q Consensus 74 e~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~-----~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~ 148 (492)
.-. -+.|+..+...+++++|+++|.||++- |..+ .-+.|. . ++......
T Consensus 109 ~~~--------~r~t~~i~~~i~~i~~L~~~g~aY~~~~g~vyf~~~-------------~~~~yg-~---l~~~~~~~- 162 (461)
T 1li5_A 109 DME--------PRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVP-------------TDPTYG-V---LSRQDLDQ- 162 (461)
T ss_dssp SBC--------CBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGG-------------GCTTTT-T---TTTC-----
T ss_pred CEE--------ECCCHHHHHHHHHHHHHHHCCCEEEECCCCEECCCC-------------CCCCCC-C---CCCCCCCC-
T ss_conf 874--------111489999999999998679889726886733565-------------530115-5---11002000-
Q ss_pred HHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECC-------------CCCHHHHHHH--HHHHHH-HHHH
Q ss_conf 20257740788622431143047513402136432356410004-------------5324898678--876444-4444
Q gi|255764513|r 149 SQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKS-------------DGMPTYHLAN--VIDDHL-MKIT 212 (492)
Q Consensus 149 ~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~-------------dg~ptY~~a~--vvDD~~-m~it 212 (492)
+..|. |.-.+ + .-.+-.||+|+|+ .|.|--|.-| +.-|++ -.+.
T Consensus 163 ~~~~~----~~~~~--------~--------~K~~~~DF~Lwk~~~~~e~~w~spWG~grPgWhiecs~m~~~~lg~~~D 222 (461)
T 1li5_A 163 LQAGA----RVDVV--------D--------DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFD 222 (461)
T ss_dssp --------------------------------CCSTTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEE
T ss_pred CCCCC----CCCCC--------C--------CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHH
T ss_conf 12467----65656--------5--------6788364665387889987667887755897266758999988270532
Q ss_pred HHHCCCCCC----CHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHCCCCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 311223543----0247889999985100000-101455531101322122343-3024566629773779989985067
Q gi|255764513|r 213 HVARGEEWI----SSVPKHILLYQYFNFPIPE-FIHLPLIKNPDKSKLSKRRNP-TSISYYSAMGYLPEALINFLALLFV 286 (492)
Q Consensus 213 hviRg~d~~----~~t~~q~~l~~al~~~~p~-f~H~pli~~~~g~klSKR~~~-~~i~~~~~~GylPeAilNyLalLGw 286 (492)
-..=|.||+ .|-+.|. ..+.|-+.|. |.|...+ ..+|+|+||.-|. +++.++. .+|-|+++.-|+..--+
T Consensus 223 ih~gG~Dl~fpHhene~aq~--~a~~g~~~~~~w~h~g~~-~~~g~KMSKSlgn~~~~~~~~-~~~~~~~~R~~lLs~hY 298 (461)
T 1li5_A 223 IHGGGSDLMFPHHENEIAQS--TCAHDGQYVNYWMHSGMV-MVDREKMSKSLGNFFTVRDVL-KYYDAETVRYFLMSGHY 298 (461)
T ss_dssp EEECBGGGTTTHHHHHHHHH--HHHSSSCCEEEECCBCCE-EETTBCCCGGGTCCCBHHHHH-TTSCHHHHHHHHHSSCT
T ss_pred CCCCCHHHCCCCCCCHHHHH--HHHHCCCCCHHHHHCCCC-CCCCCCCCCCCCCEEEHHHHH-CCCCHHHHHHHHHHCCC
T ss_conf 26575410688643599999--987558850077635822-258764464468874488864-12776999999985367