HHsearch results for GI: 255764513 and protein with PDBid: 1nzj_A
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
Probab=100.00 E-value=0 Score=695.35 Aligned_cols=289 Identities=30% Similarity=0.555 Sum_probs=264.7
Q ss_pred CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 88877056348433887850159999999999997188499997048666388679999999988658988867655887
Q gi|255764513|r 2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGA 81 (492)
Q Consensus 2 ~~~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~ 81 (492)
|+.+++||||||||||+||||||||||+||++||++||+|+|||||||++|++++|++.|+++|+|||++||+
T Consensus 1 ~~~~~~~tRfAPsPtG~lHlG~artal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wLgl~~d~------- 73 (298)
T 1nzj_A 1 MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDG------- 73 (298)
T ss_dssp ---CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSS-------
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC-------
T ss_conf 9899836867959898520899999999999999809989998687997758768999999998744666776-------
Q ss_pred CCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf 67632326289999999999988982451488999776688766431000236655578833300112025774078862
Q gi|255764513|r 82 YGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTV 161 (492)
Q Consensus 82 ~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~ 161 (492)
+||+||+|+++|++++++|+++|+||+||||+++|+..|. .|++.|+..... ....++|++.
T Consensus 74 -~~~~QS~r~~~y~~~~~~L~~~G~aY~C~csr~~l~~~~~---------~~~~~~~~~~~~--------~~~~~~r~~~ 135 (298)
T 1nzj_A 74 -DVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG---------IYDGHCRVLHHG--------PDNAAVRIRQ 135 (298)
T ss_dssp -CCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTS---------SCCCTTTTTCCC--------STTCEEEECC
T ss_pred -CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCC---------CCCCCCCCCCCC--------CCCHHHEEEC
T ss_conf -4332676899999999999977982250255888876302---------333333223345--------5322210205
Q ss_pred CCCCEEECCCCCCCCEECCCC-CCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf 243114304751340213643-2356410004532489867887644444443112235430247889999985100000
Q gi|255764513|r 162 PNQGSCVFQDKVYGEMEIPWN-AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240 (492)
Q Consensus 162 p~~~~~~~~D~i~G~~~~~~~-~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~ 240 (492)
+.. ...|.|.++|.+.+... ..+||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||++|+
T Consensus 136 ~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~r~Dg~ptY~lA~vVDD~~~gIThViRG~Dl~~st~~Q~~L~~aLg~~~P~ 214 (298)
T 1nzj_A 136 QHP-VTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD 214 (298)
T ss_dssp SSC-CCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred CCC-CEEEEECCCCCEEECCCCCCCCEEEECCCCCCCEEECHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 786-2167442216366313334464124657786311222011543269978964886665768899999973899985
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHH----HHHHHHHHCCCCCC-
Q ss_conf 1014555311013221223433024566629773779989985067666553011014677----76520211375544-
Q gi|255764513|r 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQL----IHHFDLHHLSKAGA- 315 (492)
Q Consensus 241 f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~el----i~~FdL~~I~Ks~A- 315 (492)
|+|+|||++++|+|||||+++.+| ++|+.+.+++|||.+|||+++ .+.+.|+++|+ |+.|++++|+||++
T Consensus 215 y~H~pli~~~~G~KLSKr~~a~~i----~~~~~~~~~~~~L~~lG~~~~-~~~~~~s~~e~l~~~i~~f~l~~i~ks~~i 289 (298)
T 1nzj_A 215 YIHLPLALNPQGAKLSKQNHAPAL----PKGDPRPVLIAALQFLGQQAE-AHWQDFSVEQILQSAVKNWRLTAVPESAIV 289 (298)
T ss_dssp EEEECBCCC-------------CC----CSSCCHHHHHHHHHHTTCCCC-SCGGGSCHHHHHHHHHHTCCGGGSCCCSBC
T ss_pred EEEEEEEECCCCCCCCCCCCHHHH----HCCCCCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHCCCHHHCCCCCCC
T ss_conf 498672577899856776871133----358931999999998089986-223448999999999857697678854014
Q ss_pred --CCHHHH
Q ss_conf --201565
Q gi|255764513|r 316 --VFDKQK 321 (492)
Q Consensus 316 --~FD~eK 321 (492)
.||..|
T Consensus 290 ~~~f~~~~ 297 (298)
T 1nzj_A 290 NSTFSNAS 297 (298)
T ss_dssp --------
T ss_pred CCCCCCCC
T ss_conf 57888787