HHsearch results for GI: 255764513 and protein with PDBid: 1nzj_A

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
Probab=100.00  E-value=0  Score=695.35  Aligned_cols=289  Identities=30%  Similarity=0.555  Sum_probs=264.7

Q ss_pred             CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             88877056348433887850159999999999997188499997048666388679999999988658988867655887
Q gi|255764513|r    2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGA   81 (492)
Q Consensus         2 ~~~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~   81 (492)
                      |+.+++||||||||||+||||||||||+||++||++||+|+|||||||++|++++|++.|+++|+|||++||+       
T Consensus         1 ~~~~~~~tRfAPsPtG~lHlG~artal~n~l~Ar~~~G~~iLRieDtD~~R~~~~~~~~I~~dL~wLgl~~d~-------   73 (298)
T 1nzj_A            1 MTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDG-------   73 (298)
T ss_dssp             ---CCCEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCSCGGGSCTTHHHHHHHHHHHTTCCCSS-------
T ss_pred             CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC-------
T ss_conf             9899836867959898520899999999999999809989998687997758768999999998744666776-------


Q ss_pred             CCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEE
Q ss_conf             67632326289999999999988982451488999776688766431000236655578833300112025774078862
Q gi|255764513|r   82 YGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTV  161 (492)
Q Consensus        82 ~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~  161 (492)
                       +||+||+|+++|++++++|+++|+||+||||+++|+..|.         .|++.|+.....        ....++|++.
T Consensus        74 -~~~~QS~r~~~y~~~~~~L~~~G~aY~C~csr~~l~~~~~---------~~~~~~~~~~~~--------~~~~~~r~~~  135 (298)
T 1nzj_A           74 -DVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGG---------IYDGHCRVLHHG--------PDNAAVRIRQ  135 (298)
T ss_dssp             -CCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTS---------SCCCTTTTTCCC--------STTCEEEECC
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCC---------CCCCCCCCCCCC--------CCCHHHEEEC
T ss_conf             -4332676899999999999977982250255888876302---------333333223345--------5322210205


Q ss_pred             CCCCEEECCCCCCCCEECCCC-CCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCH
Q ss_conf             243114304751340213643-2356410004532489867887644444443112235430247889999985100000
Q gi|255764513|r  162 PNQGSCVFQDKVYGEMEIPWN-AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE  240 (492)
Q Consensus       162 p~~~~~~~~D~i~G~~~~~~~-~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~  240 (492)
                      +.. ...|.|.++|.+.+... ..+||||+|+||+|||||||||||++|||||||||+||++|||+|++||+||||++|+
T Consensus       136 ~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~r~Dg~ptY~lA~vVDD~~~gIThViRG~Dl~~st~~Q~~L~~aLg~~~P~  214 (298)
T 1nzj_A          136 QHP-VTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPD  214 (298)
T ss_dssp             SSC-CCEEEETTTEEEECCHHHHHSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCE
T ss_pred             CCC-CEEEEECCCCCEEECCCCCCCCEEEECCCCCCCEEECHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf             786-2167442216366313334464124657786311222011543269978964886665768899999973899985


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHH----HHHHHHHHCCCCCC-
Q ss_conf             1014555311013221223433024566629773779989985067666553011014677----76520211375544-
Q gi|255764513|r  241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQL----IHHFDLHHLSKAGA-  315 (492)
Q Consensus       241 f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~el----i~~FdL~~I~Ks~A-  315 (492)
                      |+|+|||++++|+|||||+++.+|    ++|+.+.+++|||.+|||+++ .+.+.|+++|+    |+.|++++|+||++ 
T Consensus       215 y~H~pli~~~~G~KLSKr~~a~~i----~~~~~~~~~~~~L~~lG~~~~-~~~~~~s~~e~l~~~i~~f~l~~i~ks~~i  289 (298)
T 1nzj_A          215 YIHLPLALNPQGAKLSKQNHAPAL----PKGDPRPVLIAALQFLGQQAE-AHWQDFSVEQILQSAVKNWRLTAVPESAIV  289 (298)
T ss_dssp             EEEECBCCC-------------CC----CSSCCHHHHHHHHHHTTCCCC-SCGGGSCHHHHHHHHHHTCCGGGSCCCSBC
T ss_pred             EEEEEEEECCCCCCCCCCCCHHHH----HCCCCCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHHHCCCHHHCCCCCCC
T ss_conf             498672577899856776871133----358931999999998089986-223448999999999857697678854014


Q ss_pred             --CCHHHH
Q ss_conf             --201565
Q gi|255764513|r  316 --VFDKQK  321 (492)
Q Consensus       316 --~FD~eK  321 (492)
                        .||..|
T Consensus       290 ~~~f~~~~  297 (298)
T 1nzj_A          290 NSTFSNAS  297 (298)
T ss_dssp             --------
T ss_pred             CCCCCCCC
T ss_conf             57888787