HHsearch results for GI: 255764513 and protein with PDBid: 1yi8_B

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=98.30  E-value=0.00022  Score=48.60  Aligned_cols=201  Identities=18%  Similarity=0.202  Sum_probs=113.0

Q ss_pred             CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-------CCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             7056348433887850159999999999997188499997048-------666388679999999988658988867655
Q gi|255764513|r    6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDT-------DSKRSTLESENAVMQSLKWCGLNWDEGPDI   78 (492)
Q Consensus         6 ~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDt-------d~~R~~~~~~~~i~~~l~wlgl~~De~~~~   78 (492)
                      .|-|=|.  |||.+||||.-.|+.+|..- |.+|..++=|=|.       |......+.....+.++--+|++++...  
T Consensus        24 rv~tG~~--PSG~~HlG~~l~~~~~~~~l-Q~~~~~~i~IaD~ha~t~~~~~~~~~r~~~~~~~~~~lA~G~Dp~k~~--   98 (351)
T 1yi8_B           24 RVLTGDR--PTGALHLGHLAGSLQNRVRL-QDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTT--   98 (351)
T ss_dssp             EEEEEEC--CSSCCBHHHHHHTHHHHHHH-TSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEE--
T ss_pred             EEEECCC--CCCCCHHHHHHHHHHHHHHH-HCCCCEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE--
T ss_conf             8996638--89726268789999999998-757988999815367616999999999999999999998069931043--


Q ss_pred             CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf             88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r   79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR  158 (492)
Q Consensus        79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR  158 (492)
                           .|+||+-.+.+.-....        -|.++--++......  ...                .. ....       
T Consensus        99 -----i~~qS~~~~~~el~~~~--------~~~~~~~~l~~~~~~--~~~----------------~~-~~~~-------  139 (351)
T 1yi8_B           99 -----CVVQSAVPELAELTVYF--------LNLVTVSHLRQNPTV--KAE----------------IA-QKGY-------  139 (351)
T ss_dssp             -----EEEGGGCTHHHHHHHHH--------HTTSBHHHHHTCHHH--HHH----------------HH-HHTC-------
T ss_pred             -----EEECCCHHHHHHHHHHH--------HHHHHHHHHHHHHHH--HHH----------------HC-CCCC-------
T ss_conf             -----77355113578899999--------876445258887899--986----------------30-2366-------


Q ss_pred             EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH--
Q ss_conf             862243114304751340213643235641000453248986788764444444311223543024788999998510--
Q gi|255764513|r  159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF--  236 (492)
Q Consensus       159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~--  236 (492)
                                 .+               -+   +=|..+|-.--+-|=...+.++|.=|+|-...--.-..|.+.+|+  
T Consensus       140 -----------~~---------------~~---~~g~~~YP~lQaaDi~~~~~divpvG~DQ~~h~~LaRdia~~~n~~~  190 (351)
T 1yi8_B          140 -----------GE---------------RV---PAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQTREIVRRFNALY  190 (351)
T ss_dssp             -----------TT---------------CC---BHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHHHHHHHHHT
T ss_pred             -----------CC---------------CC---CCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             -----------66---------------77---73445550876514654055446776237999999999999954004


Q ss_pred             ------CCCHHHHHHHHHHHHC-CCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC
Q ss_conf             ------0000101455531101-32212234330245666297737799899850
Q gi|255764513|r  237 ------PIPEFIHLPLIKNPDK-SKLSKRRNPTSISYYSAMGYLPEALINFLALL  284 (492)
Q Consensus       237 ------~~p~f~H~pli~~~~g-~klSKR~~~~~i~~~~~~GylPeAilNyLalL  284 (492)
                            +.|...|++.+.+.+| +|+||..+.. |. +-+   .|+.|..=+...
T Consensus       191 ~~~~~~P~~~~~~~~~l~gL~g~~KmSkS~~~~-I~-l~D---~~~~I~kKI~ka  240 (351)
T 1yi8_B          191 APVLAEPQAQLSRVPRLPGLDGQAKMSKSLGNA-IA-LGD---SADEVARKVMGM  240 (351)
T ss_dssp             CSCSCCCEEEECSSCSCCCTTSSSCCCTTTTCC-CB-TTC---CHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHCCCCCCCCCCHHCCCCCCCC-CC-CCC---CHHHHHHHHHHC
T ss_conf             776678667764134565777501103685334-67-789---999999998712