HHsearch results for GI: 255764513 and protein with PDBid: 2csx_A
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.06 E-value=4.8e-10 Score=87.05 Aligned_cols=281 Identities=12% Similarity=0.057 Sum_probs=132.1
Q ss_pred CCCCCCE-EEECCCCCCCCCCHHHHHHHHHHHHHHHHC---C--CEEEEEECCCCC---------CCC----CHHHHHHH
Q ss_conf 9888770-563484338878501599999999999971---8--849999704866---------638----86799999
Q gi|255764513|r 1 MISSSKV-RVRIAPSPTGEPHIGTAYTALFNYLIAKRT---G--GKFILRIEDTDS---------KRS----TLESENAV 61 (492)
Q Consensus 1 ~~~~~~v-~~RfaPsPtG~lH~G~~rtal~n~l~a~~~---~--g~f~lRieDtd~---------~R~----~~~~~~~i 61 (492)
|+.+.+. +|==-|-|||.|||||||+.+.--.++|-. | -.|+-=++|.|. .++ .+.+.+.+
T Consensus 1 ~~~~~~~~i~~~~py~nG~lHlGHa~~~i~~Di~~R~~r~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~ 80 (497)
T 2csx_A 1 MTLMKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERF 80 (497)
T ss_dssp CCSSCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99888879968998888971001048799999999999823998756475341669999999985999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99988658988867655887676323262899999999999889824514889997766887664310002366555788
Q gi|255764513|r 62 MQSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLS 141 (492)
Q Consensus 62 ~~~l~wlgl~~De~~~~~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~ 141 (492)
.++++++|++||.-... . ..+....=+....+|.++|.+|.+......-...... ... ....+++.|....
T Consensus 81 ~~~~~~l~i~~d~~~~t---~----~~~~~~~~~~~~~~l~~~g~iy~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~ 151 (497)
T 2csx_A 81 KKLWEFLKIEYTKFIRT---T----DPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEF-KSE-AELAEDHTCPIHQ 151 (497)
T ss_dssp HHHHHHTTCCCSEEEET---T----SHHHHHHHHHHHHHHHHTTCEEEEEC-----------------------------
T ss_pred HHHHHHCCCCCCCCCCC---C----CHHHHHHHHHHHHHHHHCCCEEECCEEECCCCCCCCC-CCC-HHHCCCCCCCCCC
T ss_conf 99999859888767625---8----8787655889999987626600010252234243433-560-2320356555444
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCEE-----------ECCCCCCCCEE-CCCCCCCCCCEECC-----CCCH--------
Q ss_conf 33300112025774078862243114-----------30475134021-36432356410004-----5324--------
Q gi|255764513|r 142 SQEIERLSQEQKKHVVRLTVPNQGSC-----------VFQDKVYGEME-IPWNAVDMQVLLKS-----DGMP-------- 196 (492)
Q Consensus 142 ~~e~~~~~~~g~~~~iR~k~p~~~~~-----------~~~D~i~G~~~-~~~~~~~D~vi~r~-----dg~p-------- 196 (492)
.. ......+.+.|++...... ...+..+..+. +....+.|..+.|. .|.|
T Consensus 152 ~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~wgi~~p~~~~~~ 226 (497)
T 2csx_A 152 KK-----CEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHT 226 (497)
T ss_dssp -----------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEE
T ss_pred CC-----CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45-----2136787503231320899999998499764858899999999970364357775422468886777789962
Q ss_pred ---------HHHHHH--------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHCCCCCCC
Q ss_conf ---------898678--------876444444431122354302478899999851000001-01455531101322122
Q gi|255764513|r 197 ---------TYHLAN--------VIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEF-IHLPLIKNPDKSKLSKR 258 (492)
Q Consensus 197 ---------tY~~a~--------vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f-~H~pli~~~~g~klSKR 258 (492)
+|..+. ..|=|..|+.. +|+ |..+.+ ....|+|.+.|.. .|...+ ..+|+|+||.
T Consensus 227 ~~~~~d~~~~~~~~~~~~~~~~~p~di~~~G~D~-~~~--h~~~~~---a~~~a~~~~~p~~~~~~g~~-~~~G~KmSKS 299 (497)
T 2csx_A 227 IYVWFDALFNYISALEDKVEIYWPADLHLVGKDI-LRF--HTVYWP---AFLMSLGYELPKKVFAHGWW-TVEGKKMSKT 299 (497)
T ss_dssp ECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGG-HHH--HHTHHH---HHHHHHTCCCCSCEEEECCE-ESSSSBCCTT
T ss_pred CCEECCCCCCCHHHCCCCCCCCCCCCEEECCCCC-CHH--HHHHHH---HHHHHCCCCCCCEEEECCCE-EECCCCCCCC
T ss_conf 0201133322111200112447887223067653-005--799999---99998499999889855848-6368523356
Q ss_pred CCC-CCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHH
Q ss_conf 343-302456662977377998998506766655301101467776520
Q gi|255764513|r 259 RNP-TSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFD 306 (492)
Q Consensus 259 ~~~-~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~Fd 306 (492)
.|. +.+.++.++ |-|+++.=|++..+- .+.+-.|+.+++.+...
T Consensus 300 ~gn~i~~~~~l~~-~g~D~lR~~l~~~~~---~~~d~~f~~~~~~~~~~ 344 (497)
T 2csx_A 300 LGNVVDPYEVVQE-YGLDEVRYFLLREVP---FGQDGDFSKKAILNRIN 344 (497)
T ss_dssp TTCCCCHHHHHHH-HCHHHHHHHHHHSSC---TTSCEECCHHHHHHHHH
T ss_pred CCCCCCHHHHHHH-CCCCHHHHHHHHCCC---CCCCCCCCHHHHHHHHH
T ss_conf 8865799999873-298588989986088---77765547999999999