HHsearch results for GI: 255764513 and protein with PDBid: 2ja2_A
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Probab=100.00 E-value=0 Score=1154.97 Aligned_cols=481 Identities=35% Similarity=0.581 Sum_probs=457.0
Q ss_pred CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98887705634843388785015999999999999718849999704866638867999999998865898886765588
Q gi|255764513|r 1 MISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGG 80 (492)
Q Consensus 1 ~~~~~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g 80 (492)
|+++++|||||||||||+|||||||||||||+|||++||+|||||||||++|++++|++.|+++|+||||+|||||..+|
T Consensus 1 m~~~~~vr~RfAPsPtG~lHiG~~rtal~n~~~Ak~~~g~fiLRieDtD~~R~~~~~~~~I~~~l~wlgl~~De~~~~~g 80 (498)
T 2ja2_A 1 MTATETVRVRFCPSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDTDAQRDSEESYLALLDALRWLGLDWDEGPEVGG 80 (498)
T ss_dssp CCSCCCCEEEECCCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 99999456851879897312899999999999999829989998788998748889999999999986998776867688
Q ss_pred CCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEE
Q ss_conf 76763232628999999999998898245148899977668876643100023665557883330011202577407886
Q gi|255764513|r 81 AYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLT 160 (492)
Q Consensus 81 ~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k 160 (492)
++|||+||+|+++|++++++|+++|+||+||||+|++++.|+.+. .+.++.|++.|++++.++...+.++|.+||||||
T Consensus 81 ~~~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~cs~e~l~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~~g~~~viR~k 159 (498)
T 2ja2_A 81 PYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAG-RNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLR 159 (498)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTT-CCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC-CCCCCCCCHHHCCCCHHHHHHHHHCCCCEEEEEE
T ss_conf 887730975999999999999877997343687788887542104-6887777401013444667877646998069984
Q ss_pred ECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-----H
Q ss_conf 22431143047513402136432356410004532489867887644444443112235430247889999985-----1
Q gi|255764513|r 161 VPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYF-----N 235 (492)
Q Consensus 161 ~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al-----~ 235 (492)
+|. +.+.|+|.|+|++++++..++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+|| |
T Consensus 160 ~~~-~~~~~~D~v~g~~~~~~~~~~D~vi~r~dg~PtY~~a~vvDD~~~~ithviRg~d~~~~t~~q~~l~~~l~~~~~~ 238 (498)
T 2ja2_A 160 MPD-DDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIRIGVA 238 (498)
T ss_dssp CCS-SCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHHTTSC
T ss_pred CCC-CCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCEEECEECCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 599-8851134304207970466898444020585331415451344678755507876577416899999999851668
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCC
Q ss_conf 00000101455531101322122343302456662977377998998506766655301101467776520211375544
Q gi|255764513|r 236 FPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGA 315 (492)
Q Consensus 236 ~~~p~f~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A 315 (492)
|++|.|+|+|||++++|+|||||+|+.+|.+||++||+||||+|||++||||++ +++|+||++|||+.||+++|+||||
T Consensus 239 ~~~p~~~h~~l~~~~~g~klskr~~~~~~~~~r~~GylPeAl~NyLa~LGws~~-~~~Ei~sl~eli~~F~l~~i~ks~a 317 (498)
T 2ja2_A 239 ERIPKFAHLPTVLGEGTKKLSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIA-DDHDLFGLDEMVAAFDVADVNSSPA 317 (498)
T ss_dssp CCCCEEEEECCEECSSSSBCCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSC-SSCCCCCHHHHHHHCCGGGCCCSCE
T ss_pred CCCCEEEECHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCC-CCCCCCCHHCCCCCCCCCCCCCCCC
T ss_conf 888448753233054566254569851399999869988999999999679888-8750000020345305344777773
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 2015655664355551269989999864442000--------01232206888725320356677556752246788854
Q gi|255764513|r 316 VFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKE--------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAE 387 (492)
Q Consensus 316 ~FD~eKL~wlN~qyIr~~l~~~el~~~l~~~l~~--------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e 387 (492)
+||++||+|+|++||+ .++.+++.+.+.+++.. .+++.++++++++|+.+++|+.+++.|||.++..++++
T Consensus 318 ~FD~~KL~wlN~~yi~-~l~~eel~~~l~~~l~~~~~~~~~d~~~l~~ii~lik~ri~~l~Di~~~~~~f~~~~~~~d~~ 396 (498)
T 2ja2_A 318 RFDQKKADALNAEHIR-MLDVGDFTVRLRDHLDTHGHHIALDEAAFAAAAELVQTRIVVLGDAWELLKFFNDDQYVIDPK 396 (498)
T ss_dssp ECCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHTTSCSSTTHHHHHHGGGSTTTCCCCHH
T ss_pred CCCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHH
T ss_conf 0028888999999999-499999999999999973764310378888888886631131077899999860687557979
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH-HHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHH
Q ss_conf 5543314866799999999998405888998889999999-999957982331012678896488888899999884959
Q gi|255764513|r 388 SFKSTALCPEEIIDILKTTQEEFEVIQIWKRENIETALRN-VAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRS 466 (492)
Q Consensus 388 ~~~k~~~~~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~-i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGke 466 (492)
...+ ...++...+|..+.+.+.++++|+.++|++.+++ +++++++|+|++|+|||+||||+++||+|+++|++|||+
T Consensus 397 ~~~k--~l~~~~~~iL~~~~~~L~~~~~w~~e~ie~~ik~~i~e~~~iK~k~l~~pLR~ALTG~~~GP~L~~ii~lLGke 474 (498)
T 2ja2_A 397 AAAK--ELGPDGAAVLDAALAALTSVTDWTAPLIEAALKDALIEGLALKPRKAFSPIRVAATGTTVSPPLFESLELLGRD 474 (498)
T ss_dssp HHHH--HSSHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHSSSSCSCHHHHHHHHCHH
T ss_pred HHHH--HCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHH
T ss_conf 9987--44876999999999998717515899999999999999869988898999999994998493999999993999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998866576
Q gi|255764513|r 467 VVYFRLRHAIALVSSLVQNHK 487 (492)
Q Consensus 467 etl~RL~~aL~~l~~~~~~~~ 487 (492)
+|++||++|+++|++..+.|.
T Consensus 475 e~l~RL~~Al~~lg~~~~~~~ 495 (498)
T 2ja2_A 475 RSMQRLRAARQLVGHALEHHH 495 (498)
T ss_dssp HHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999855653133