HHsearch results for GI: 255764513 and protein with PDBid: 3al0_C

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00  E-value=0  Score=1126.86  Aligned_cols=454  Identities=37%  Similarity=0.685  Sum_probs=421.7

Q ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             77056348433887850159999999999997188499997048666388679999999988658988867655887676
Q gi|255764513|r    5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGP   84 (492)
Q Consensus         5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p   84 (492)
                      ..|||||||||||+|||||+|||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||||..+|++||
T Consensus       128 ~~vrtRFaPsPTG~lHiG~~rtAl~n~l~Ak~~~G~filRieDTD~~R~~~~~~~~I~~~L~wlGl~~Degp~~~g~~~p  207 (592)
T 3al0_C          128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP  207 (592)
T ss_dssp             CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             86478318898974207999999999999997599899986779987587799999999999869986768777889878


Q ss_pred             EECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             32326289999999999988982451488999776688766431000236655578833300112025774078862243
Q gi|255764513|r   85 YRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQ  164 (492)
Q Consensus        85 ~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~  164 (492)
                      |+||+|+++|+++|++|+++|+||+||||++|+...|      +....|+.           .....|.++++|||+|+ 
T Consensus       208 y~QS~r~~~y~~~a~~L~~~g~AY~C~ct~~e~~~~~------~~~~~~~~-----------~~~~~~~~~~~r~k~~~-  269 (592)
T 3al0_C          208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKEL------FTTYEYPH-----------EYKEKGHPVTIKFKVLP-  269 (592)
T ss_dssp             CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEEC------CCCSSCCH-----------HHHHTTCCEEEEECCCS-
T ss_pred             EEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH------HHCCCCCH-----------HHHCCCCCCCCCCCCCC-
T ss_conf             4264079999999999997699753017889999876------32002762-----------23204886200113789-


Q ss_pred             CEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             11430475134021364323564100045324898678876444444431122354302478899999851000001014
Q gi|255764513|r  165 GSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL  244 (492)
Q Consensus       165 ~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~  244 (492)
                      +.+.|+|.|+|++++++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|+|||+
T Consensus       270 ~~~~~~D~i~G~i~~~~~~l~D~Vi~R~Dg~ptY~~a~vvdD~~~~ithviRg~d~~~~t~~~~~l~~alg~~~P~faHl  349 (592)
T 3al0_C          270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI  349 (592)
T ss_dssp             SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEE
T ss_pred             CCEEEEECCCCEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             83578764411155364447981899528981100112450665788744065202147099999999827799711661


Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf             55531101322122343302456662977377998998506766655301101467776520211375544201565566
Q gi|255764513|r  245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDW  324 (492)
Q Consensus       245 pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~w  324 (492)
                      |||++++|+|||||+|+++|.+||++||+||||+|||++||||++  ++|+|+++||++.||+++|+||||+||++||+|
T Consensus       350 PLIl~~dg~KLSKR~ga~sV~~yre~GylPeAllNYLalLGWS~~--~~EifsLdELIe~FdL~~IsKS~A~FD~~KL~w  427 (592)
T 3al0_C          350 PLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVE--GDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEW  427 (592)
T ss_dssp             CCCBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCCC--SCSCCCTTTTGGGCCTTSBCSSCCBCCHHHHHH
T ss_pred             CCEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHH
T ss_conf             102368987555567975278998779994899999998368986--311331999998369120267752041999999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHCC---------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf             4355551269989999864442000---------0123220688872532035667755675224678885455433148
Q gi|255764513|r  325 LNGRWIREKLSTTEFLSRVSQWMKE---------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALC  395 (492)
Q Consensus       325 lN~qyIr~~l~~~el~~~l~~~l~~---------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~~k~~~~  395 (492)
                      +|++||+ .++.+++...+.+++..         ..++..+++++++|+++++|+.+.+.+||.++..++.+...+. +.
T Consensus       428 iN~qyLr-~ls~eel~~~l~~~~~~~~~~i~~~d~~~l~~li~likeri~tL~Di~~~~~~ff~~~~~~d~~~~~K~-l~  505 (592)
T 3al0_C          428 VNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKF-LK  505 (592)
T ss_dssp             HHHHHHT-TSCHHHHHHHHHHHHHHHTCCCCCCCTTTHHHHHHHHHTTCSSSSHHHHTTGGGTCSCCCCCTTHHHHH-TS
T ss_pred             HHHHHHH-HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHH-CC
T ss_conf             9999998-599999999999999984203533667788877688763305099999998874279732388999875-27


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf             66799999999998405888998889999999999957982331012678896488888899999884959999999999
Q gi|255764513|r  396 PEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHA  475 (492)
Q Consensus       396 ~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~a  475 (492)
                      .+.+..+|..+.+.++++++|+.++|++++++++++.++|+|++|+|||+||||+.+||+|+++|++||+++|++||++|
T Consensus       506 ~e~a~~iL~~~~~~L~~le~w~~e~Ie~~ik~i~e~~~iK~k~l~~pLRvALTG~~~GP~L~dim~lLGkeevL~RL~~a  585 (592)
T 3al0_C          506 REEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERT  585 (592)
T ss_dssp             SSSHHHHHHHHHHHHHSCSCCSSHHHHHHHHHHTTTTSSCHHHHHHHHHHHHTSSSCCSCHHHHTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHH
T ss_conf             17699999999999860785899999999999999809878899999999990999091999999990999999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|255764513|r  476 IALVS  480 (492)
Q Consensus       476 L~~l~  480 (492)
                      |++|+
T Consensus       586 Le~Lk  590 (592)
T 3al0_C          586 LQFLK  590 (592)
T ss_dssp             HTTTC
T ss_pred             HHHHC
T ss_conf             99872