HHsearch results for GI: 255764513 and protein with PDBid: 3al0_C
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=1126.86 Aligned_cols=454 Identities=37% Similarity=0.685 Sum_probs=421.7
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 77056348433887850159999999999997188499997048666388679999999988658988867655887676
Q gi|255764513|r 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDIGGAYGP 84 (492)
Q Consensus 5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~~g~~~p 84 (492)
..|||||||||||+|||||+|||||||+|||++||+|||||||||++|+++++++.|+++|+||||+|||||..+|++||
T Consensus 128 ~~vrtRFaPsPTG~lHiG~~rtAl~n~l~Ak~~~G~filRieDTD~~R~~~~~~~~I~~~L~wlGl~~Degp~~~g~~~p 207 (592)
T 3al0_C 128 ELVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGP 207 (592)
T ss_dssp CCCEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCCCSSSCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 86478318898974207999999999999997599899986779987587799999999999869986768777889878
Q ss_pred EECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 32326289999999999988982451488999776688766431000236655578833300112025774078862243
Q gi|255764513|r 85 YRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQ 164 (492)
Q Consensus 85 ~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR~k~p~~ 164 (492)
|+||+|+++|+++|++|+++|+||+||||++|+...| +....|+. .....|.++++|||+|+
T Consensus 208 y~QS~r~~~y~~~a~~L~~~g~AY~C~ct~~e~~~~~------~~~~~~~~-----------~~~~~~~~~~~r~k~~~- 269 (592)
T 3al0_C 208 YRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKEL------FTTYEYPH-----------EYKEKGHPVTIKFKVLP- 269 (592)
T ss_dssp CBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEEC------CCCSSCCH-----------HHHHTTCCEEEEECCCS-
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH------HHCCCCCH-----------HHHCCCCCCCCCCCCCC-
T ss_conf 4264079999999999997699753017889999876------32002762-----------23204886200113789-
Q ss_pred CEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 11430475134021364323564100045324898678876444444431122354302478899999851000001014
Q gi|255764513|r 165 GSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244 (492)
Q Consensus 165 ~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~p~f~H~ 244 (492)
+.+.|+|.|+|++++++.+++||||+|+||+||||||||||||+|||||||||+||++|||+|++||+||||++|+|||+
T Consensus 270 ~~~~~~D~i~G~i~~~~~~l~D~Vi~R~Dg~ptY~~a~vvdD~~~~ithviRg~d~~~~t~~~~~l~~alg~~~P~faHl 349 (592)
T 3al0_C 270 GKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 349 (592)
T ss_dssp SCCEECCTTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEE
T ss_pred CCEEEEECCCCEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 83578764411155364447981899528981100112450665788744065202147099999999827799711661
Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 55531101322122343302456662977377998998506766655301101467776520211375544201565566
Q gi|255764513|r 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKLDW 324 (492)
Q Consensus 245 pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGws~~~~d~Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~w 324 (492)
|||++++|+|||||+|+++|.+||++||+||||+|||++||||++ ++|+|+++||++.||+++|+||||+||++||+|
T Consensus 350 PLIl~~dg~KLSKR~ga~sV~~yre~GylPeAllNYLalLGWS~~--~~EifsLdELIe~FdL~~IsKS~A~FD~~KL~w 427 (592)
T 3al0_C 350 PLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVE--GDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEW 427 (592)
T ss_dssp CCCBCTTSSBCCTTTCSSBHHHHHHTTCCHHHHHHHHTTTTBCCC--SCSCCCTTTTGGGCCTTSBCSSCCBCCHHHHHH
T ss_pred CCEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCC--CCHHHHHHHHHHHCCCHHCCCCCCCCHHHHHHH
T ss_conf 102368987555567975278998779994899999998368986--311331999998369120267752041999999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHCC---------CCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCC
Q ss_conf 4355551269989999864442000---------0123220688872532035667755675224678885455433148
Q gi|255764513|r 325 LNGRWIREKLSTTEFLSRVSQWMKE---------KDRLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALC 395 (492)
Q Consensus 325 lN~qyIr~~l~~~el~~~l~~~l~~---------~~~l~~il~likeRi~tL~Di~~~~~ffF~~~~~~d~e~~~k~~~~ 395 (492)
+|++||+ .++.+++...+.+++.. ..++..+++++++|+++++|+.+.+.+||.++..++.+...+. +.
T Consensus 428 iN~qyLr-~ls~eel~~~l~~~~~~~~~~i~~~d~~~l~~li~likeri~tL~Di~~~~~~ff~~~~~~d~~~~~K~-l~ 505 (592)
T 3al0_C 428 VNGKHMR-RIDLEDLKREFIEWAKYAGKEIPSVDERYFSETLRICREKVNTLSQLYDIMYPFMNDDYEYEKDYVEKF-LK 505 (592)
T ss_dssp HHHHHHT-TSCHHHHHHHHHHHHHHHTCCCCCCCTTTHHHHHHHHHTTCSSSSHHHHTTGGGTCSCCCCCTTHHHHH-TS
T ss_pred HHHHHHH-HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHH-CC
T ss_conf 9999998-599999999999999984203533667788877688763305099999998874279732388999875-27
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCEEEEEEECCCCCCCHHHHHHHHCHHHHHHHHHHH
Q ss_conf 66799999999998405888998889999999999957982331012678896488888899999884959999999999
Q gi|255764513|r 396 PEEIIDILKTTQEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRHA 475 (492)
Q Consensus 396 ~e~~~~iL~~~~~~L~~~~~w~~e~Ie~~ik~i~e~~giK~k~l~~PLRiALTG~~~GP~L~eil~lLGkeetl~RL~~a 475 (492)
.+.+..+|..+.+.++++++|+.++|++++++++++.++|+|++|+|||+||||+.+||+|+++|++||+++|++||++|
T Consensus 506 ~e~a~~iL~~~~~~L~~le~w~~e~Ie~~ik~i~e~~~iK~k~l~~pLRvALTG~~~GP~L~dim~lLGkeevL~RL~~a 585 (592)
T 3al0_C 506 REEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERT 585 (592)
T ss_dssp SSSHHHHHHHHHHHHHSCSCCSSHHHHHHHHHHTTTTSSCHHHHHHHHHHHHTSSSCCSCHHHHTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 17699999999999860785899999999999999809878899999999990999091999999990999999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|255764513|r 476 IALVS 480 (492)
Q Consensus 476 L~~l~ 480 (492)
|++|+
T Consensus 586 Le~Lk 590 (592)
T 3al0_C 586 LQFLK 590 (592)
T ss_dssp HTTTC
T ss_pred HHHHC
T ss_conf 99872