HHsearch results for GI: 255764513 and protein with PDBid: 3fnr_A

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=98.98  E-value=7.6e-08  Score=72.12  Aligned_cols=269  Identities=16%  Similarity=0.175  Sum_probs=124.0

Q ss_pred             CCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             7705634-84338878501599999999999971--8849999---7048666388679999999988658988867655
Q gi|255764513|r    5 SKVRVRI-APSPTGEPHIGTAYTALFNYLIAKRT--GGKFILR---IEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDI   78 (492)
Q Consensus         5 ~~v~~Rf-aPsPtG~lH~G~~rtal~n~l~a~~~--~g~f~lR---ieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~   78 (492)
                      .+|.+=| .|.|++.||+||+|++++---+||-.  -|-=+.|   |.|.-..  ..-..-.+......--..-+ +.  
T Consensus        30 ~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~V~r~nylgD~G~Q--~g~l~~~~~~~~~~~~~~~~-~~--  104 (464)
T 3fnr_A           30 ESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQ--IYLLGLSILLSVKESILHEN-VE--  104 (464)
T ss_dssp             CEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHH--HHHHHHHHHHHHHHHTSCCC-CC--
T ss_pred             CEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHH--HHHHHHHHHHHHHHHHCCCC-CC--
T ss_conf             87999755999898752520041699999999999869927899987885999--99999999998555530455-21--


Q ss_pred             CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHH---------HHHHHHHHHHCCCCCCC---C--CCCCCHHH
Q ss_conf             8876763232628999999999998898245148899977---------66887664310002366---5--55788333
Q gi|255764513|r   79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLE---------EMRRAQRKRNIPSRYDG---H--CLKLSSQE  144 (492)
Q Consensus        79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~---------~~r~~~~~~~~~~~Y~~---~--~r~l~~~e  144 (492)
                       -+..-|.+....+...+..++.   +..+.+-....++.         ..++.....+.  .||-   .  ......+.
T Consensus       105 -~~~~~y~~~~~~~~~~~~~~~~---~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~v--~fD~~~~ES~~~~~~~~~  178 (464)
T 3fnr_A          105 -YPEQYYKGEYIVDLAKEAFEKF---GKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKI--KIDSYVSERSYYDALNAT  178 (464)
T ss_dssp             -CCSSCCCSHHHHHHHHHHHHHH---CGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTC--CCSCEEEGGGGSTTHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--EEEEEHHHHHHHHHHHHH
T ss_conf             -0455424666668999999987---7753115569999999999999999987997085--100001157888779999


Q ss_pred             HHHHHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHH---HHHHHHHHH--HHCCCC
Q ss_conf             001120257740788622431143047513402136432356410004532489867887---644444443--112235
Q gi|255764513|r  145 IERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVI---DDHLMKITH--VARGEE  219 (492)
Q Consensus       145 ~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vv---DD~~m~ith--viRg~d  219 (492)
                      ++.....|.  +  ..  .++.+.+...-.|       ...|.||+|+||++||.-.-+.   +-...+...  .|-|.|
T Consensus       179 ~~~l~~~~~--~--~e--~~ga~~~~~~~~~-------d~~~~~l~ksdG~~~Y~t~Dia~~~~k~~~~~d~~I~v~g~d  245 (464)
T 3fnr_A          179 LESLKEHKG--I--YE--QEGKIWLASSQKG-------DEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGAD  245 (464)
T ss_dssp             HHHHHHTTC--E--EE--ETTEEEECGGGGT-------CSSCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGG
T ss_pred             HHHHHHCCC--E--EE--ECCCEEEECCCCC-------CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             998864598--6--85--3798775011037-------887852796079741014589999998722897289998660


Q ss_pred             CCCHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHC--CCCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf             430247889999985100000101---455531101--3221223433-0245666297737799899850676665530
Q gi|255764513|r  220 WISSVPKHILLYQYFNFPIPEFIH---LPLIKNPDK--SKLSKRRNPT-SISYYSAMGYLPEALINFLALLFVHKSEDDD  293 (492)
Q Consensus       220 ~~~~t~~q~~l~~al~~~~p~f~H---~pli~~~~g--~klSKR~~~~-~i~~~~~~GylPeAilNyLalLGws~~~~d~  293 (492)
                      +.---.......+++|+..+...|   .-+.+..+|  .|+|+|.|.. .+.+.-++             +|        
T Consensus       246 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l~dll~e-------------vg--------  304 (464)
T 3fnr_A          246 HHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE-------------IG--------  304 (464)
T ss_dssp             GGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHH-------------HC--------
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHH-------------HH--------
T ss_conf             466776799999975677556405898888997698023441478883559999999-------------74--------


Q ss_pred             HHCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf             110146777652021137554420156556
Q gi|255764513|r  294 ELMDMQQLIHHFDLHHLSKAGAVFDKQKLD  323 (492)
Q Consensus       294 Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~  323 (492)
                           -..++-|+|+.-..++-.||++++.
T Consensus       305 -----~~airy~~L~~~~~~~~~Fd~~~~~  329 (464)
T 3fnr_A          305 -----SDALRYIFLSKKCDTHLEFDISDLQ  329 (464)
T ss_dssp             -----HHHHHHHTTSSCTTSCEEEEGGGGG
T ss_pred             -----HHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf             -----7787666531465555534668775