HHsearch results for GI: 255764513 and protein with PDBid: 3fnr_A
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=98.98 E-value=7.6e-08 Score=72.12 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=124.0
Q ss_pred CCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7705634-84338878501599999999999971--8849999---7048666388679999999988658988867655
Q gi|255764513|r 5 SKVRVRI-APSPTGEPHIGTAYTALFNYLIAKRT--GGKFILR---IEDTDSKRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~Rf-aPsPtG~lH~G~~rtal~n~l~a~~~--~g~f~lR---ieDtd~~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
.+|.+=| .|.|++.||+||+|++++---+||-. -|-=+.| |.|.-.. ..-..-.+......--..-+ +.
T Consensus 30 ~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~V~r~nylgD~G~Q--~g~l~~~~~~~~~~~~~~~~-~~-- 104 (464)
T 3fnr_A 30 ESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGNQ--IYLLGLSILLSVKESILHEN-VE-- 104 (464)
T ss_dssp CEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHHH--HHHHHHHHHHHHHHHTSCCC-CC--
T ss_pred CEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHH--HHHHHHHHHHHHHHHHCCCC-CC--
T ss_conf 87999755999898752520041699999999999869927899987885999--99999999998555530455-21--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHH---------HHHHHHHHHHCCCCCCC---C--CCCCCHHH
Q ss_conf 8876763232628999999999998898245148899977---------66887664310002366---5--55788333
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLE---------EMRRAQRKRNIPSRYDG---H--CLKLSSQE 144 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~---------~~r~~~~~~~~~~~Y~~---~--~r~l~~~e 144 (492)
-+..-|.+....+...+..++. +..+.+-....++. ..++.....+. .||- . ......+.
T Consensus 105 -~~~~~y~~~~~~~~~~~~~~~~---~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~v--~fD~~~~ES~~~~~~~~~ 178 (464)
T 3fnr_A 105 -YPEQYYKGEYIVDLAKEAFEKF---GKEFFSEENIPSLADWAKDKMLVLIKQNLEQAKI--KIDSYVSERSYYDALNAT 178 (464)
T ss_dssp -CCSSCCCSHHHHHHHHHHHHHH---CGGGCSGGGHHHHHHHHHHHHHHHHHHHHHHTTC--CCSCEEEGGGGSTTHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--EEEEEHHHHHHHHHHHHH
T ss_conf -0455424666668999999987---7753115569999999999999999987997085--100001157888779999
Q ss_pred HHHHHHCCCCCEEEEEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHH---HHHHHHHHH--HHCCCC
Q ss_conf 001120257740788622431143047513402136432356410004532489867887---644444443--112235
Q gi|255764513|r 145 IERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVI---DDHLMKITH--VARGEE 219 (492)
Q Consensus 145 ~~~~~~~g~~~~iR~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vv---DD~~m~ith--viRg~d 219 (492)
++.....|. + .. .++.+.+...-.| ...|.||+|+||++||.-.-+. +-...+... .|-|.|
T Consensus 179 ~~~l~~~~~--~--~e--~~ga~~~~~~~~~-------d~~~~~l~ksdG~~~Y~t~Dia~~~~k~~~~~d~~I~v~g~d 245 (464)
T 3fnr_A 179 LESLKEHKG--I--YE--QEGKIWLASSQKG-------DEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGAD 245 (464)
T ss_dssp HHHHHHTTC--E--EE--ETTEEEECGGGGT-------CSSCEEEECTTSCBCHHHHHHHHHHHHHTSSCSEEEEEEEGG
T ss_pred HHHHHHCCC--E--EE--ECCCEEEECCCCC-------CCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 998864598--6--85--3798775011037-------887852796079741014589999998722897289998660
Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHC--CCCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHCCCCCCCCCH
Q ss_conf 430247889999985100000101---455531101--3221223433-0245666297737799899850676665530
Q gi|255764513|r 220 WISSVPKHILLYQYFNFPIPEFIH---LPLIKNPDK--SKLSKRRNPT-SISYYSAMGYLPEALINFLALLFVHKSEDDD 293 (492)
Q Consensus 220 ~~~~t~~q~~l~~al~~~~p~f~H---~pli~~~~g--~klSKR~~~~-~i~~~~~~GylPeAilNyLalLGws~~~~d~ 293 (492)
+.---.......+++|+..+...| .-+.+..+| .|+|+|.|.. .+.+.-++ +|
T Consensus 246 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l~dll~e-------------vg-------- 304 (464)
T 3fnr_A 246 HHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDE-------------IG-------- 304 (464)
T ss_dssp GGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHH-------------HC--------
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHHH-------------HH--------
T ss_conf 466776799999975677556405898888997698023441478883559999999-------------74--------
Q ss_pred HHCCHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 110146777652021137554420156556
Q gi|255764513|r 294 ELMDMQQLIHHFDLHHLSKAGAVFDKQKLD 323 (492)
Q Consensus 294 Eifsl~eli~~FdL~~I~Ks~A~FD~eKL~ 323 (492)
-..++-|+|+.-..++-.||++++.
T Consensus 305 -----~~airy~~L~~~~~~~~~Fd~~~~~ 329 (464)
T 3fnr_A 305 -----SDALRYIFLSKKCDTHLEFDISDLQ 329 (464)
T ss_dssp -----HHHHHHHTTSSCTTSCEEEEGGGGG
T ss_pred -----HHHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf -----7787666531465555534668775