HHsearch results for GI: 255764513 and protein with PDBid: 3m5w_A
>3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni}
Probab=98.26 E-value=0.00011 Score=50.58 Aligned_cols=201 Identities=18% Similarity=0.192 Sum_probs=118.8
Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC-----CC-CCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 77056348433887850159999999999997188499997048-----66-6388679999999988658988867655
Q gi|255764513|r 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDT-----DS-KRSTLESENAVMQSLKWCGLNWDEGPDI 78 (492)
Q Consensus 5 ~~v~~RfaPsPtG~lH~G~~rtal~n~l~a~~~~g~f~lRieDt-----d~-~R~~~~~~~~i~~~l~wlgl~~De~~~~ 78 (492)
.+|.|=|.| ||.+||||.-.++-+|... |.++..++=|=|- |+ .............++.-+|++++-..
T Consensus 4 ~rv~tG~~P--SG~~HlG~~lg~i~~~~~l-Q~~~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~~a~G~dp~k~~-- 78 (322)
T 3m5w_A 4 MRVLTGLQP--SGDLHIGNYFGAIKQMVDA-QEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSV-- 78 (322)
T ss_dssp CCBEEEECC--SSCCBHHHHHHTHHHHHHT-TTTSCCEEEECTTTHHHHCCCHHHHHHHHHHHHHHHHHTTCCTTTSE--
T ss_pred CEEEECCCC--CCCCHHHHHHHHHHHHHHH-HCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE--
T ss_conf 626765078--9705478789999999998-71698899993141611697999999999999999998289998579--
Q ss_pred CCCCCCEECCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEE
Q ss_conf 88767632326289999999999988982451488999776688766431000236655578833300112025774078
Q gi|255764513|r 79 GGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVR 158 (492)
Q Consensus 79 ~g~~~p~~QS~r~~~y~~~~~~L~~~g~aY~c~~t~eel~~~r~~~~~~~~~~~Y~~~~r~l~~~e~~~~~~~g~~~~iR 158 (492)
.|.||+-.+.. +.+- .+-|.++-.++.....
T Consensus 79 -----i~~qs~~~~~~-~l~~-------~l~~~~~~~~l~~~~~------------------------------------ 109 (322)
T 3m5w_A 79 -----FWLQSDVKEVM-ELYW-------ILSQFTPMGLLERAHS------------------------------------ 109 (322)
T ss_dssp -----EEEGGGCTHHH-HHHH-------HHHHTCBHHHHHTCHH------------------------------------
T ss_pred -----EEECCCCHHHH-HHHH-------HHHHHHHHHHHHHHHH------------------------------------
T ss_conf -----99888505678-9999-------9988611489876333------------------------------------
Q ss_pred EEECCCCEEECCCCCCCCEECCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 86224311430475134021364323564100045324898678876444444431122354302478899999851000
Q gi|255764513|r 159 LTVPNQGSCVFQDKVYGEMEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPI 238 (492)
Q Consensus 159 ~k~p~~~~~~~~D~i~G~~~~~~~~~~D~vi~r~dg~ptY~~a~vvDD~~m~ithviRg~d~~~~t~~q~~l~~al~~~~ 238 (492)
| .+..... .+. +-|..+|-.--+.|=..++.++|.=|.|-...--.-.-+-..||...
T Consensus 110 ~----------~~~~~~~---~~~---------~~~~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~ltRdia~k~n~~~ 167 (322)
T 3m5w_A 110 Y----------KDKVAKG---LSA---------SHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEW 167 (322)
T ss_dssp H----------HC----------C---------BHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHHHHHHHHH
T ss_pred H----------HHHHCCC---CCC---------CCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 1----------1110344---676---------50401777777445676278622226551899999999999987553
Q ss_pred CHH---------HHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 001---------014555311013221223433024566629773779989985067
Q gi|255764513|r 239 PEF---------IHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFV 286 (492)
Q Consensus 239 p~f---------~H~pli~~~~g~klSKR~~~~~i~~~~~~GylPeAilNyLalLGw 286 (492)
+.+ .+.+++++.+|+|+||-++. +|. +-+ .|+.|..=+...-.
T Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~KMSkS~~n-~I~-l~D---~~~~I~kKI~ka~t 219 (322)
T 3m5w_A 168 GEIFTLPEARVNEEVAVVVGTDGAKMSKSYQN-TID-IFS---SEKTLKKQISSIVT 219 (322)
T ss_dssp SSCSCCCEEEC----CCCBCTTSSBCCGGGTC-CCB-SSS---CHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC-CCC---CHHHHHHHHHCCCC
T ss_conf 76544320013432000368999867778887-553-556---88899886650447