RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
(492 letters)
>gnl|CDD|179296 PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.
Length = 476
Score = 681 bits (1759), Expect = 0.0
Identities = 221/482 (45%), Positives = 295/482 (61%), Gaps = 14/482 (2%)
Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
KVR R APSPTG HIG A TALFN+L A+ GGKFILRIEDTD +RST E+E A++
Sbjct: 1 MMMKVRTRFAPSPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQERSTEEAEEAIL 60
Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122
+ LKW GL+WDEGPD GG YGPYRQSER +IY+ Y + LLE+ A+ C+C+ E LE MR
Sbjct: 61 EGLKWLGLDWDEGPD-GGPYGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMRE 119
Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
QR P RYDG C L+ +E+ + V+R VP++G VF D V GE+E P +
Sbjct: 120 EQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVFDDLVRGEIEFPNS 179
Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFI 242
+D V+L+SDG PTY+ A V+DDHLM ITHV RGE+ +S+ PK ILLY+ + +P F
Sbjct: 180 ELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGWEVPVFA 239
Query: 243 HLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLI 302
HLPLI PD KLSKR TS+ Y MGYLPEAL+N+LALL S D E+ +++LI
Sbjct: 240 HLPLILGPDGKKLSKRHGATSVEQYRDMGYLPEALLNYLALLGW--SHGDQEIFSLEELI 297
Query: 303 HHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWM--------KEKDRLT 354
FDL +SK+ A FD +KLDWLNG +IRE L E + W ++ L
Sbjct: 298 ELFDLERVSKSPARFDIKKLDWLNGHYIRE-LDPEELAELLLPWHLEQEGLDTEDGPYLE 356
Query: 355 QALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQ 414
+ + L + R TL L ++ F F+ ++ K E ++L+ E+ E ++
Sbjct: 357 KVVPLLKERAKTLKELAELARFFFEDFPEYDEDAAK--KHLKEVAREVLEALLEKLEALE 414
Query: 415 IWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRLRH 474
W E IE A++ VA+ + PL +A+TG PLF+S+E+LG+ V RLR
Sbjct: 415 EWTAEAIEAAIKAVAEELGLKGGKLFMPLRVALTGRTVGPPLFESMELLGKEEVLARLRK 474
Query: 475 AI 476
A+
Sbjct: 475 AL 476
>gnl|CDD|161891 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This alignment models just the bacterial and
mitochondrial forms of the enzyme. In many species, the
charging of tRNA(gln) proceeds first through
misacylation with Glu and then transamidation. For this
reason, glutamyl-tRNA synthetases may act on both
tRNA(gln) and tRNA(glu). This model is highly specific.
Proteins with positive scores below the trusted cutoff
may be fragments rather than full-length sequences.
Length = 470
Score = 468 bits (1206), Expect = e-132
Identities = 195/475 (41%), Positives = 284/475 (59%), Gaps = 20/475 (4%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
KVR R APSPTG HIG A TALFNYL AK TGG+FILRIEDTD +R+ E+E A+++ L
Sbjct: 1 KVRTRFAPSPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDTDLERNIEEAEEAILEGL 60
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
KW G++WDEGP Y QS+R +IY+ Y + LLE+ LA+RC+CS ERLE +R Q+
Sbjct: 61 KWLGISWDEGP--------YYQSQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQK 112
Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVD 185
RYDG C L +EIE + VVR +P + F D+V GE+ + +D
Sbjct: 113 ANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVRGEITFQNSELD 172
Query: 186 MQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLP 245
V+L+SDG PTY+ A V+DD+LMKITHV RGE+ IS+ PK IL+YQ + IP F HLP
Sbjct: 173 DFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGWKIPVFAHLP 232
Query: 246 LIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHF 305
+I + D KLSKR TSI + GYLPEALIN+LALL DD E +++LI F
Sbjct: 233 MILDEDGKKLSKRDGATSIMQFKEQGYLPEALINYLALLGWS-PPDDQEFFSLEELIEIF 291
Query: 306 DLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEK--------DRLTQAL 357
L+ +SK+ A FD +KL WLN +I+E L E + +K ++L + L
Sbjct: 292 SLNRVSKSPAKFDWKKLQWLNAHYIKE-LPDEELFELLDPHLKSLVNTDTLNREQLAELL 350
Query: 358 TLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFEVIQIWK 417
L + R+ TL + ++ F+ + ++FK + + ++L+ +++ + ++ W
Sbjct: 351 LLFKERLKTLKEIAELIRLFFEDKKEVDEDAFKKHLK--KNVKEVLEALKKKLQALEEWT 408
Query: 418 RENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFRL 472
+ +++A++ +A+ K + PL LA+TG + L +E++G++ RL
Sbjct: 409 ADEVKSAIKQIAEELGLKGKKVFMPLRLALTGKGHGPDLAQILELIGKTESIKRL 463
>gnl|CDD|178234 PLN02627, PLN02627, glutamyl-tRNA synthetase.
Length = 535
Score = 373 bits (959), Expect = e-104
Identities = 158/356 (44%), Positives = 218/356 (61%), Gaps = 6/356 (1%)
Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
VRVR APSPTG H+G A TALFNYL A+ GGKF+LRIEDTD RST ESE AV+
Sbjct: 42 KGGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLARSTKESEEAVL 101
Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122
+ LKW GL+WDEGPD+GG YGPYRQSER IY+ Y + LLE + CFC+ E LE M+
Sbjct: 102 RDLKWLGLDWDEGPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKE 161
Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
+ +P RY G S +E++ + + R VP +GS D + G E+ WN
Sbjct: 162 EAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEGSVKIDDLIRG--EVSWN 219
Query: 183 AVDMQ--VLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240
+ VLL+S+G P Y+ +DD M ITHV R EE + + + L+Y+ FP+P
Sbjct: 220 TDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALGFPMPR 279
Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQ 300
F H+ LI PD+SKLSKR TS+ + MGYLP+A++N+LALL + ++E+ +++
Sbjct: 280 FAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPDAMVNYLALLGWNDGT-ENEIFTLEE 338
Query: 301 LIHHFDLHHLSKAGAVFDKQKLDWLNGRWIREKLSTTEFLSRVSQWMKEKDRLTQA 356
L+ F + ++K+GAVFD KL W+NG+ +R L E + V + K L ++
Sbjct: 339 LVEKFSIDRINKSGAVFDSTKLKWMNGQHLR-LLPEEELVKLVGERWKSAGILKES 393
>gnl|CDD|183594 PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.
Length = 445
Score = 247 bits (633), Expect = 5e-66
Identities = 117/324 (36%), Positives = 168/324 (51%), Gaps = 12/324 (3%)
Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64
V R APSPTG H+G A TAL N+L A++ GGKFILRI+DTD +RS E +A+ +
Sbjct: 1 MTVITRFAPSPTGYLHVGNARTALLNWLYARKHGGKFILRIDDTDLERSKQEYADAIAED 60
Query: 65 LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124
LKW G+NWD +RQS+R + Y + L + C+ + E LE R+ Q
Sbjct: 61 LKWLGINWDR---------TFRQSDRFDRYDEAAEKLKAAGRLYPCYETPEELELKRKIQ 111
Query: 125 RKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAV 184
R +P YD LKL+ +E L E +K R + + + D + GE I ++
Sbjct: 112 LSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKL-DDEPISWDDLIRGEQSIDAASL 170
Query: 185 DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHL 244
VL+++DG Y L +V+DD M ITH+ RGE+ +++ I +++ P F HL
Sbjct: 171 SDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALGAKPPVFAHL 230
Query: 245 PLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHH 304
L+ D LSKR SI G P A+ + LA L S+ + M++L
Sbjct: 231 SLLTGADGKGLSKRLGGLSIRSLREDGIEPMAIASLLARL--GTSDPVEPYTSMEELAES 288
Query: 305 FDLHHLSKAGAVFDKQKLDWLNGR 328
FDL S+A A FD + L+ LN R
Sbjct: 289 FDLSSFSRAPAKFDPEDLERLNAR 312
>gnl|CDD|180216 PRK05710, PRK05710, glutamyl-Q tRNA(Asp) synthetase; Reviewed.
Length = 299
Score = 229 bits (587), Expect = 1e-60
Identities = 98/318 (30%), Positives = 146/318 (45%), Gaps = 26/318 (8%)
Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
+ + R APSP+G H G+ AL ++L A+ GG+++LRIED D R + +A++
Sbjct: 2 TMTPYIGRFAPSPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDIDPPREVPGAADAIL 61
Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRR 122
L+W GL+WD GP QS+R + Y+ + L + L + CFCS R E
Sbjct: 62 ADLEWLGLHWD-GP-------VLYQSQRHDAYRAALDRLRAQGLVYPCFCS--RKEIAAA 111
Query: 123 AQRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN 182
A + Y G C L L + RL VP+ F D++ G
Sbjct: 112 APAPPDGGGIYPGTCRDL-------LHGPRNPPAWRLRVPDAVIA-FDDRLQGRQHQDLA 163
Query: 183 AV--DMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPE 240
D VL ++DG+ Y LA V+DD L +THV RG + + S P+ I L Q P P
Sbjct: 164 LAVGDF-VLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLGLPTPR 222
Query: 241 FIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDM-Q 299
++HLPL+ N D KLSK+ ++ L L L D + ++
Sbjct: 223 YLHLPLVLNADGQKLSKQNGAPAL----DAAGPLPVLAAALRFLGQPPPAADASVEELLA 278
Query: 300 QLIHHFDLHHLSKAGAVF 317
Q + H+DL L + +
Sbjct: 279 QAVAHWDLTRLPRQAEIN 296
>gnl|CDD|184889 PRK14895, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 513
Score = 224 bits (573), Expect = 3e-59
Identities = 130/328 (39%), Positives = 187/328 (57%), Gaps = 14/328 (4%)
Query: 4 SSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQ 63
++ V R APSPTG HIG+A TALFNYL A+ GKF+LRIEDTD +RST E+ A+
Sbjct: 2 NNNVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDKERSTKEAVEAIFS 61
Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123
LKW GL+W+ G I QS+R N+Y+ LL+ A+ CF E +E
Sbjct: 62 GLKWLGLDWN-GEVI-------FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIER---- 109
Query: 124 QRKRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNA 183
QR++ + ++ + + K V+RL P +GS D + GE+ I +
Sbjct: 110 QRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIHDTLQGEVVIENSH 169
Query: 184 VDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIH 243
+D VLL++DG TY LA V+DDH M ITH+ RG++ +++ + + +YQ F + +P H
Sbjct: 170 IDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFGYAVPSMTH 229
Query: 244 LPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIH 303
+PLI D +KLSKR I Y MGYLPE+L N+ LL + S DDE++ M Q I
Sbjct: 230 IPLIHGADGAKLSKRHGALGIEAYKDMGYLPESLCNY--LLRLGWSHGDDEIISMTQAID 287
Query: 304 HFDLHHLSKAGAVFDKQKLDWLNGRWIR 331
F+L L K+ + D K++ LN ++R
Sbjct: 288 WFNLDSLGKSPSKLDFAKMNSLNAHYLR 315
Score = 36.6 bits (84), Expect = 0.013
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Query: 348 KEKDRLTQALTLAQSRITTLSALPQMTD-FLFKSDLHLTAESFKSTALCPEEIIDILKTT 406
+E + QA+ R TL L ++ +L S + + +S + C + +I K
Sbjct: 388 QEIGYIKQAMPSLLVRSETLLELTRLAQIYLVDSPIIYSQDSKEIIENCDKNLI---KQI 444
Query: 407 QEEFEVIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRS 466
E ++ + +E+++ + +A + L I+KP+ ITG S +F+ EILG+
Sbjct: 445 IENLSELEQFDKESVQNKFKEIAAANDLKLNDIMKPVRALITGMTASPSVFEIAEILGKE 504
Query: 467 VVYFRLR 473
+ RL+
Sbjct: 505 NILKRLK 511
>gnl|CDD|183510 PRK12410, PRK12410, glutamylglutaminyl-tRNA synthetase;
Provisional.
Length = 433
Score = 222 bits (569), Expect = 1e-58
Identities = 113/318 (35%), Positives = 174/318 (54%), Gaps = 17/318 (5%)
Query: 10 RIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLKWCG 69
R APSPTG+ HIG A+FNY++AK+ F++RIEDTD +R+ + +++ L G
Sbjct: 3 RFAPSPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKERNIEGKDKEILEILNLFG 62
Query: 70 LNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRKRNI 129
++WD+ QSE ++ + LL +K AF CFCS E LE + +
Sbjct: 63 ISWDK---------LVYQSENLKFHRQMAEKLLSEKKAFACFCSEEELEAKKEKAKNEKK 113
Query: 130 PSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWNAVDMQVL 189
P RYDG C L E+ K VVRL PN F D + GE+ + +D V+
Sbjct: 114 PYRYDGTCENLEDDEV---LNCNKPFVVRLKKPNHTMS-FTDAIKGEVSFEPDEIDSFVI 169
Query: 190 LKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIP-EFIHLPLIK 248
L++D PTY+ A +DD L I+ + RGE+ +S+ PK IL+ + + + HLP+I
Sbjct: 170 LRADKTPTYNFACAVDDMLYDISLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIIL 229
Query: 249 NPDKSKLSKRRNPTSISYYSAMGYLPEALINFLALLFVHKSEDDDELMDMQQLIHHFDLH 308
N + K+SKR N +S+ + G+LP A+ N+L LL + E+ +++ I FD+
Sbjct: 230 NEEGKKMSKRDNASSVKWLLEQGFLPSAIANYLILLGNKTPK---EIFTLEEAIEWFDIE 286
Query: 309 HLSKAGAVFDKQKLDWLN 326
+SK+ A FD +KL ++N
Sbjct: 287 KISKSPAKFDLKKLRFIN 304
>gnl|CDD|163550 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase.
This protein resembles a shortened glutamyl-tRNA
ligase, but its purpose is to modify tRNA(Asp) at a
queuosine position in the anticodon rather than to
charge a tRNA with its cognate amino acid.
Length = 272
Score = 205 bits (524), Expect = 2e-53
Identities = 86/272 (31%), Positives = 130/272 (47%), Gaps = 21/272 (7%)
Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
R R APSP+G H G+ AL +YL A+ GG++++RIED D R + + ++++L+
Sbjct: 1 YRGRFAPSPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLDPPREVPGAADDILRTLE 60
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
GL+WD QS+R +YQ + LL LA+ C C+ + +
Sbjct: 61 AYGLHWDGEVV--------YQSQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDG-- 110
Query: 127 RNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEMEIPWN-AVD 185
Y G C L + + RL VP+ F D++ G + AV
Sbjct: 111 ---GGIYPGTC------RNGLLGRPARPAAWRLRVPDGVIA-FDDRLQGPQQQDLAAAVG 160
Query: 186 MQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLP 245
VL ++DG+ Y LA V+DD ITHV RG + + S P+ I L + P P ++HLP
Sbjct: 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLGLPPPRYLHLP 220
Query: 246 LIKNPDKSKLSKRRNPTSISYYSAMGYLPEAL 277
L+ N D KLSK+ ++ + L AL
Sbjct: 221 LVVNADGEKLSKQNGAPALDLSHPLPALLAAL 252
>gnl|CDD|161890 TIGR00463, gltX_arch, glutamyl-tRNA synthetase, archaeal and
eukaryotic family. The glutamyl-tRNA synthetases of the
eukaryotic cytosol and of the Archaea are more similar
to glutaminyl-tRNA synthetases than to bacterial
glutamyl-tRNA synthetases. This alignment models just
the eukaryotic cytosolic and archaeal forms of the
enzyme. In some eukaryotes, the glutamyl-tRNA synthetase
is part of a longer, multifunctional aminoacyl-tRNA
ligase. In many species, the charging of tRNA(gln)
proceeds first through misacylation with Glu and then
transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
Length = 560
Score = 119 bits (299), Expect = 2e-27
Identities = 79/263 (30%), Positives = 119/263 (45%), Gaps = 30/263 (11%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
+V +R AP+P+G HIG A A+ N AK+ GK I+R +DTD +R E+ + +++ L
Sbjct: 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDTDPRRVKPEAYDMILEDL 152
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
W G+ DE QS+R Y Y + L+E A+ C C E E+ R
Sbjct: 153 DWLGVKGDE---------VVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFREL----R 199
Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQK-------KHVVRL-TVPNQGSCVFQDKV-YGE 176
+ C S +E + +E K VVR T + +D V +
Sbjct: 200 NDGVAC----ACRDRSVEENLEIWEEMLNGTEEGGKVVVRAKTDYKHKNPAIRDWVIFRI 255
Query: 177 MEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236
+ P + + PT + IDDHL+ +THV RG++ I + K +Y YF +
Sbjct: 256 NKTPHPRTGDKYKV----YPTMDFSVPIDDHLLGVTHVLRGKDHIDNERKQQYIYMYFGW 311
Query: 237 PIPEFIHLPLIKNPDKSKLSKRR 259
+PEFIH +K D LS
Sbjct: 312 ELPEFIHWGRLKINDVRTLSTSS 334
>gnl|CDD|179754 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 106 bits (267), Expect = 1e-23
Identities = 50/120 (41%), Positives = 68/120 (56%), Gaps = 11/120 (9%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD--SKRSTLESENAVMQ 63
KV +R AP+P+G H+G A A+ N AK GGKFILR EDTD +KR E+ + +++
Sbjct: 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRTKRPDPEAYDMILE 160
Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123
LKW G+ WDE QS+R IY Y + L+E A+ C C E +E+R A
Sbjct: 161 DLKWLGVKWDE---------VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDA 211
Score = 61.4 bits (150), Expect = 5e-10
Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 23/104 (22%)
Query: 196 PTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNFPIPEFIHLPLIKNPD---- 251
PTY+ A +DDHL+ +THV RG++ I + K +Y YF + PE IH +K
Sbjct: 281 PTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLS 340
Query: 252 KSKLSKR------------RNPTSISYYSAM---GYLPEALINF 280
SK+ K R PT A+ G LPEA+
Sbjct: 341 TSKIRKGIEEGEYSGWDDPRLPT----LRALRRRGILPEAIREL 380
>gnl|CDD|173593 PTZ00402, PTZ00402, glutamyl-tRNA synthetase; Provisional.
Length = 601
Score = 70.4 bits (172), Expect = 1e-12
Identities = 70/268 (26%), Positives = 113/268 (42%), Gaps = 40/268 (14%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
KV R P +G HIG A AL N ++A + GK + R +DT+ + E A++ L
Sbjct: 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDTNPSKEKEHFEQAILDDL 111
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
G++WD GP Y ++ + L++K LA +C EEM++ R
Sbjct: 112 ATLGVSWDVGPTYSSDY--------MDLMYEKAEELIKKGLA---YCDKTPREEMQKC-R 159
Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHV---------VRLTVPNQGSCVFQDKVYGE 176
+P++Y +S +E +RL E KK +++V N+ + +Y
Sbjct: 160 FDGVPTKYR----DISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENKAMRDPVIYRV 215
Query: 177 MEIPWNAVDMQVLLKSDGMPTYHLANVIDDHLMKITHVARGEEWISSVPKHILLYQYFNF 236
P + K PTY I D + +TH R E+ H QY+ F
Sbjct: 216 NLTP----HARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEY------HDRNDQYYWF 265
Query: 237 PIPEFIHLPLIK-----NPDKSKLSKRR 259
I P+++ N + S +SKR+
Sbjct: 266 CDALGIRKPIVEDFSRLNMEYSVMSKRK 293
>gnl|CDD|161880 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases.
Length = 522
Score = 61.5 bits (149), Expect = 5e-10
Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 41/341 (12%)
Query: 7 VRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSLK 66
V R P P G HIG A + N+ AK G LR +DT+ + E ++ + ++
Sbjct: 1 VHTRFPPEPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNPVKEDPEYVESIKRDVE 60
Query: 67 WCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQRK 126
W G W+ Y + + R Y + L++K LA+ + E + E R
Sbjct: 61 WLGFKWEGKIRYSSDY--FDELYR------YAEELIKKGLAYVDELTPEEIREYRGTLTD 112
Query: 127 RNIPSRYDGHCLKLSSQEIERLSQ---EQKKHVVRLTVP-NQGSCVFQDKVYGEMEIPWN 182
S Y ++ + E++ ++ K ++R + V +D V ++
Sbjct: 113 PGKNSPYRDRSIEENLALFEKMRDGKFKEGKAILRAKIDMASPFPVMRDPVAYRIK---F 169
Query: 183 AVDMQVLLKSDGMPTYHLANVIDDHLMKITH-VARGEEWISSVPKHILLYQYFNFPIP-- 239
A Q K P Y + I D + ITH + E + +L FP P
Sbjct: 170 APHHQTGTKWCIYPMYDFTHCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHIFPRPAQ 229
Query: 240 -EFIHLPLIKNPDKSKLSKR-----------------RNPTSISYYSAMGYLPEALINFL 281
EF L N + + LSKR R PT IS GY P ++ F
Sbjct: 230 YEFSRL----NLEGTVLSKRKLAQLVDDKFVRGWDDPRMPT-ISGLRRRGYTPASIREFC 284
Query: 282 ALLFVHKSEDDDELMDMQQLIHHFDLHHLSKAGAVFDKQKL 322
+ V K +++ E++ ++ I + +A AV D ++
Sbjct: 285 NRIGVTKQDNNIEVVRLESCIREDLNENAPRAMAVIDPVEV 325
>gnl|CDD|184797 PRK14703, PRK14703, glutaminyl-tRNA synthetase/YqeY domain fusion
protein; Provisional.
Length = 771
Score = 59.0 bits (143), Expect = 2e-09
Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQS 64
+V R P P G HIG A + L N+ IA+ GG+ LR++DT+ + E A+
Sbjct: 30 PRVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDTNPETEDTEYVEAIKDD 89
Query: 65 LKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQ 124
++W G +W E Y +Y Y + L++ LA+ S E + E+R
Sbjct: 90 VRWLGFDWGEHLYYASDYFE-------RMYA-YAEQLIKMGLAYVDSVSEEEIRELRGTV 141
Query: 125 RKRNIPSRY 133
+ PS Y
Sbjct: 142 TEPGTPSPY 150
>gnl|CDD|178495 PLN02907, PLN02907, glutamate-tRNA ligase.
Length = 722
Score = 54.0 bits (130), Expect = 1e-07
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD-SKRSTLESENAVMQS 64
KV R P P+G HIG A AL N A+R GK I+R +DT+ SK S EN +++
Sbjct: 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDTNPSKESDEFVEN-ILKD 271
Query: 65 LKWCGLNWDE 74
++ G+ +D
Sbjct: 272 IETLGIKYDA 281
>gnl|CDD|178772 PLN03233, PLN03233, putative glutamate-tRNA ligase; Provisional.
Length = 523
Score = 52.3 bits (125), Expect = 2e-07
Identities = 60/240 (25%), Positives = 92/240 (38%), Gaps = 62/240 (25%)
Query: 6 KVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVMQSL 65
++ R P P+G HIG A AL N A+R G+ ILR +DT+ + E E ++++ L
Sbjct: 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDTNPSKEKAEFEESIIEDL 70
Query: 66 KWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRAQR 125
+ PD Y + R Y L+E+ LA+ EEM++
Sbjct: 71 GKIEIK----PDSVSFTSDYFEPIRC-----YAIILIEEGLAYM---DDTPQEEMKK--- 115
Query: 126 KRNIPSRYDGHCLKLSSQEIERLSQEQKKHVVRLTVPNQGSCVFQDKVYGEME-IPW--- 181
ER + + KH R P + +F++ G+ E W
Sbjct: 116 --------------------ERADRAESKH--RNQSPEEALEMFKEMCSGKEEGGAWCLR 153
Query: 182 NAVDMQ---------VLLKSD------------GMPTYHLANVIDDHLMKITHVARGEEW 220
+DMQ VL + + PTY LA I D + +TH R E+
Sbjct: 154 AKIDMQSDNGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEY 213
>gnl|CDD|180031 PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.
Length = 554
Score = 44.3 bits (106), Expect = 8e-05
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 14/122 (11%)
Query: 5 SKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTD-SKRSTLESENAVMQ 63
++V R P P G HIG A + N+ +A+ GGK LR +DT+ K E +++ +
Sbjct: 28 TRVHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDTNPEKEDQ-EYVDSIKE 86
Query: 64 SLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQNLLEKKLAFRCFCSTERLEEMRRA 123
++W G +W Y + Q +Y+ Y L++K A+ S EE+ R
Sbjct: 87 DVRWLGFDWSGELRYASDY--FDQ-----LYE-YAVELIKKGKAYVDDLSA---EEI-RE 134
Query: 124 QR 125
R
Sbjct: 135 YR 136
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 40.1 bits (94), Expect = 0.001
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 17/133 (12%)
Query: 3 SSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAVM 62
+ KV R P P G HIG A ++ +AK GG LR +DT+ + E + +
Sbjct: 261 TGGKVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDTNPEAEKKEYIDHIE 320
Query: 63 QSLKWCGLNWDEGPDIGGAYGPYRQSERKNIYQPYVQ---NLLEKKLAFRCFCSTERLEE 119
+ ++W G W+ P++ + + +Q + L+ + A+ + E ++E
Sbjct: 321 EIVEWMG--WE----------PFKITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIKE 368
Query: 120 MRRAQRKRNIPSR 132
R ++K N P R
Sbjct: 369 YR--EKKMNSPWR 379
>gnl|CDD|185617 PTZ00437, PTZ00437, glutaminyl-tRNA synthetase; Provisional.
Length = 574
Score = 40.0 bits (93), Expect = 0.001
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 2 ISSSKVRVRIAPSPTGEPHIGTAYTALFNYLIAKRTGGKFILRIEDTDSKRSTLESENAV 61
++ K R P P G HIG A + N+ A+ GGK LR +DT+ + +A+
Sbjct: 47 VTGGKPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNPETEEQVYIDAI 106
Query: 62 MQSLKWCG 69
M+ +KW G
Sbjct: 107 MEMVKWMG 114
>gnl|CDD|179308 PRK01611, argS, arginyl-tRNA synthetase; Reviewed.
Length = 507
Score = 35.5 bits (83), Expect = 0.035
Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 41/97 (42%)
Query: 188 VLLKSDGMPTYH---LA-------------NVID-DHLMKITHVAR--------GEEWIS 222
VL+KSDG TY +A V+ DH H R G +
Sbjct: 247 VLIKSDGTYTYFTRDIAYHLYKFERFDRVIYVVGADH---HGHFKRLKAALKALGYDP-- 301
Query: 223 SVPKHILLYQYFNFPIPEFIHLPLIKNPDKSKLSKRR 259
+LL+Q L++ + K+S R
Sbjct: 302 -DALEVLLHQMVG----------LVRGGEGVKMSTRA 327
>gnl|CDD|182299 PRK10199, PRK10199, alkaline phosphatase isozyme conversion
aminopeptidase; Provisional.
Length = 346
Score = 32.4 bits (74), Expect = 0.26
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Query: 123 AQRKRNIPSRYDGHCLKLSSQEI---------ERLSQEQKKHVVRLTVPNQGSCVFQDKV 173
A+R +N+P+ Y + S +E +R+S +KK+ L V N + + DK+
Sbjct: 155 AERLKNVPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNT--LLVINLDNLIVGDKL 212
Query: 174 Y 174
Y
Sbjct: 213 Y 213
>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD. This
model describes the bacterial and chloroplast form of
MinD, a multifunctional cell division protein that
guides correct placement of the septum. The homologous
archaeal MinD proteins, with many archaeal genomes
having two or more forms, are described by a separate
model.
Length = 261
Score = 30.4 bits (69), Expect = 1.0
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 352 RLTQALTLAQSRITTLSALPQMTDFLFKSDLHLTAESFKSTALCPEEIIDILKTTQEEFE 411
RL QAL + R+ L LP +++ A+ PE++ ++ +EEF+
Sbjct: 68 RLQQAL-IKDKRLKNLYLLP-------------ASQTRDKDAVTPEQMKKLVNELKEEFD 113
Query: 412 VIQIWKRENIETALRNVAQHREKSLKIIVKPLFLAITGSKYSLPLFDSIEILGRSVVYFR 471
+ I IE+ RN ++++ ++ P A+ + + L ++ I ++ R
Sbjct: 114 YVIIDCPAGIESGFRNAVAPADEAI-VVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNR 172
Query: 472 LR 473
LR
Sbjct: 173 LR 174
>gnl|CDD|180982 PRK07452, PRK07452, DNA polymerase III subunit delta; Validated.
Length = 326
Score = 28.7 bits (65), Expect = 3.4
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 366 TLSALPQMTDFLF----KSDLHLTAESFKSTALCPEEIIDILKTTQE-EFEVIQIWKREN 420
TL +P+ T L K D L KST L + K +E EF +I W E
Sbjct: 87 TLPLIPENTHLLLTNTKKPDGRL-----KSTKL-------LQKLAEEKEFSLIPPWDTEG 134
Query: 421 IETALRNVAQ 430
++ + AQ
Sbjct: 135 LKQLVERTAQ 144
>gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p;
Reviewed.
Length = 300
Score = 28.7 bits (65), Expect = 4.1
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 401 DILKTTQEEFEVIQIWKRENIETALRNVAQHREKSL----KIIVKP 442
+ L T Q+ + WK + E LR V E +L KII+K
Sbjct: 187 EDLVTLQDLADAYYFWKEDGDEEELRRVILPMEYALSHLPKIIIKD 232
>gnl|CDD|183389 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 28.2 bits (64), Expect = 4.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 15 PTGEPHIGTAYT 26
P G+PHIG AYT
Sbjct: 15 PNGKPHIGHAYT 26
>gnl|CDD|180793 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 28.1 bits (63), Expect = 4.9
Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 32/113 (28%)
Query: 139 KLSSQEIERLSQEQKKHVVRLTVPNQGSCVF--QDKVYGE--MEIPWNAV---DMQV--- 188
KL + + EQ+K + + QG ++ K+ G+ E+PW+ D+QV
Sbjct: 338 KLKWKHSQLPLDEQRKLLEK-----QGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGP 392
Query: 189 -----LLKSDG-------MPTYHLANVIDDHLMKITH-----VARGEEWISSV 224
+ D PT +A + D M+IT + G EWISS+
Sbjct: 393 WVIDRYFRGDASPLVDGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSI 445
>gnl|CDD|165397 PHA03125, PHA03125, dUTPase; Provisional.
Length = 376
Score = 28.0 bits (62), Expect = 5.6
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 231 YQYFNFPIPEFIHLPLIKNPDKSKLSKRRNPTSISYYSAMGYLPEAL 277
++ N PEF L N + + N +I + AM + L
Sbjct: 243 WEMINLSPPEFAKFHLKTNRE---FIVKPNSYTIQNFDAMYVCADEL 286
>gnl|CDD|184894 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional.
Length = 434
Score = 27.2 bits (61), Expect = 9.7
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 5/33 (15%)
Query: 120 MRRAQRKRNIPSRYDGHCLKLSSQEIERLSQEQ 152
+R+ R R G L L IERL+
Sbjct: 120 LRQYLRARE-----AGDPLPLPEDPIERLAILH 147
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.135 0.398
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,040,488
Number of extensions: 518215
Number of successful extensions: 1042
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 42
Length of query: 492
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 395
Effective length of database: 3,898,497
Effective search space: 1539906315
Effective search space used: 1539906315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)