HHsearch alignment for GI: 255764514 and conserved domain: TIGR00618

>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=98.74  E-value=1.9e-05  Score=54.84  Aligned_cols=77  Identities=27%  Similarity=0.364  Sum_probs=60.2

Q ss_pred             CEEEEECCEEEEEEE-EECCC------CEEEEECCCCCCHHHHHHHHHHHHCCC-CC---------CCCCCCCCCEEEEE
Q ss_conf             259994227899998-87389------818998899978889999999871473-25---------33112897258999
Q gi|255764514|r    2 TRLSIYNIVLIESLD-IDFSA------GLSILSGDTGSGKSILLDALILVTGGR-GD---------GGLVRRHAEKGQVV   64 (554)
Q Consensus         2 ~~L~i~Nf~~i~~~~-i~f~~------Gl~vItGetGaGKS~ildAl~~~lG~r-~~---------~~~Ir~g~~~a~Ve   64 (554)
T Consensus         4 l~L~lkn~~~y~~~~~~dfT~~~fasl~~f~i~G~tGAGKtsLldAI~yALYGkP~~~~s~~~~~~~~~~~~~~~~~~~~   83 (1063)
T TIGR00618         4 LKLELKNFTSYKGESVIDFTALGFASLKLFVICGKTGAGKTSLLDAITYALYGKPVPRESEVVASKNSLSRADSEEALAE   83 (1063)
T ss_pred             CEEEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             34764063534576101027887212573677788998354599999998728887751467888754200107877654


Q ss_pred             EEEECCCCHHHHHH
Q ss_conf             99972897378888
Q gi|255764514|r   65 AVFEISHLPALEIL   78 (554)
Q Consensus        65 ~~F~~~~~~~~~~~   78 (554)
T Consensus        84 lef~~~~~~yR~~r   97 (1063)
T TIGR00618        84 LEFALDTKLYRVFR   97 (1063)
T ss_pred             HHHEECCCHHHHHH
T ss_conf             64013560114677