HHsearch alignment for GI: 255764514 and conserved domain: TIGR00618
>TIGR00618 sbcc exonuclease SbcC; InterPro: IPR004592 All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. SbcC may have nuclease activity that is functionally related to one of the nuclease activities of the RecBCD enzyme (IPR004586 from INTERPRO).; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=98.74 E-value=1.9e-05 Score=54.84 Aligned_cols=77 Identities=27% Similarity=0.364 Sum_probs=60.2
Q ss_pred CEEEEECCEEEEEEE-EECCC------CEEEEECCCCCCHHHHHHHHHHHHCCC-CC---------CCCCCCCCCEEEEE
Q ss_conf 259994227899998-87389------818998899978889999999871473-25---------33112897258999
Q gi|255764514|r 2 TRLSIYNIVLIESLD-IDFSA------GLSILSGDTGSGKSILLDALILVTGGR-GD---------GGLVRRHAEKGQVV 64 (554)
Q Consensus 2 ~~L~i~Nf~~i~~~~-i~f~~------Gl~vItGetGaGKS~ildAl~~~lG~r-~~---------~~~Ir~g~~~a~Ve 64 (554)
T Consensus 4 l~L~lkn~~~y~~~~~~dfT~~~fasl~~f~i~G~tGAGKtsLldAI~yALYGkP~~~~s~~~~~~~~~~~~~~~~~~~~ 83 (1063)
T TIGR00618 4 LKLELKNFTSYKGESVIDFTALGFASLKLFVICGKTGAGKTSLLDAITYALYGKPVPRESEVVASKNSLSRADSEEALAE 83 (1063)
T ss_pred CEEEECCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34764063534576101027887212573677788998354599999998728887751467888754200107877654
Q ss_pred EEEECCCCHHHHHH
Q ss_conf 99972897378888
Q gi|255764514|r 65 AVFEISHLPALEIL 78 (554)
Q Consensus 65 ~~F~~~~~~~~~~~ 78 (554)
T Consensus 84 lef~~~~~~yR~~r 97 (1063)
T TIGR00618 84 LEFALDTKLYRVFR 97 (1063)
T ss_pred HHHEECCCHHHHHH
T ss_conf 64013560114677