HHsearch alignment for GI: 255764514 and conserved domain: TIGR01842
>TIGR01842 type_I_sec_PrtD type I secretion system ATPase; InterPro: IPR010128 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0015031 protein transport, 0016021 integral to membrane.
Probab=97.89 E-value=6e-05 Score=51.58 Aligned_cols=69 Identities=29% Similarity=0.439 Sum_probs=52.3
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHCCCEE
Q ss_conf 0621579999999998436689976998034468887999999999999730-593999808379865017617
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSK-KIQLLAVTHAPQVAARADRHF 500 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~-~~Qvi~ITH~pqvAa~a~~h~ 500 (554)
T Consensus 467 LSGGQRQRIaLAR--Al--yG~P~lvvLDEPNsNLD~~GE~AL~~Ai~~lK~rg~tvv~itHRp~lL~~vDkIl 536 (556)
T TIGR01842 467 LSGGQRQRIALAR--AL--YGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGLVDKIL 536 (556)
T ss_pred CCCHHHHHHHHHH--HH--HCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHH
T ss_conf 8614689999999--87--1798378732889876617899999999999867972899841068999999999