HHsearch alignment for GI: 255764514 and conserved domain: TIGR03185
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.90 E-value=5e-18 Score=137.81 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=67.2
Q ss_pred CCEEEEECCEEEE-EEEEECCC----CEEEEECCCCCCHHHHHHHHHHHHCCCCC--------------CCCCCCC---C
Q ss_conf 9259994227899-99887389----81899889997888999999987147325--------------3311289---7
Q gi|255764514|r 1 MTRLSIYNIVLIE-SLDIDFSA----GLSILSGDTGSGKSILLDALILVTGGRGD--------------GGLVRRH---A 58 (554)
Q Consensus 1 L~~L~i~Nf~~i~-~~~i~f~~----Gl~vItGetGaGKS~ildAl~~~lG~r~~--------------~~~Ir~g---~ 58 (554)
T Consensus 3 l~~i~l~Nf~~y~g~~~~~~~~~~~k~i~li~G~NG~GKTTll~Ai~~~LYG~~~~~~~~~~~~y~~~~~~~~n~~~~~~ 82 (650)
T TIGR03185 3 IKQLTLENFGAYRGRQTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLGLYGKRAYCSKRGNQSYEQYLHGYINRSAGKT 82 (650)
T ss_pred EEEEEEEECEEECCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 34899970643189713657899999879997799997899999999995695100345454469999999861236888
Q ss_pred CEEEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCCE-----EEEECCEEE
Q ss_conf 25899999972897378888874789888838999999438977-----999999884
Q gi|255764514|r 59 EKGQVVAVFEISHLPALEILFAEANLTLEKHVILRRVQFPDGRT-----KAYVNDQVV 111 (554)
Q Consensus 59 ~~a~Ve~~F~~~~~~~~~~~~~~~~~~~~~~~iirR~i~~~GkS-----~~~INg~~v 111 (554)
T Consensus 83 ~~~~v~l~f~~~~~~------------~~~~~~i~R~~~~~~~~~~e~~~v~~~~~~~ 128 (650)
T TIGR03185 83 NPARITLTFSVVEGG------------KRHEYTLVRSWHINGKDVKEKFTVYKDDEED 128 (650)
T ss_pred CCEEEEEEEEECCCC------------EEEEEEEEEEEEECCCCCCEEEEEEECCCCC
T ss_conf 746999999983288------------4899999999973788751058999789663