HHsearch alignment for GI: 255764514 and conserved domain: cd03219
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.00 E-value=6.5e-05 Score=51.35 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=60.6
Q ss_pred HHCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHH-HHHCCCEEEEEE
Q ss_conf 40621579999999998436689976998034468887999999999999730-5939998083798-650176179999
Q gi|255764514|r 427 LASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSK-KIQLLAVTHAPQV-AARADRHFLVYK 504 (554)
Q Consensus 427 iaSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~-~~Qvi~ITH~pqv-Aa~a~~h~~v~K 504 (554)
T Consensus 143 ~LSGG~~Qrv~iAral~----~~P~lliLDEPT~gLD~~~~~~i~~~l~~l~~~G~tii~vsHdl~~~~~~~Drv~vm~~ 218 (236)
T cd03219 143 ELSYGQQRRLEIARALA----TDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred HCCHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCEEEEEEC
T ss_conf 69999999999999996----59999999487658999999999999999996599999991748999996999999989