HHsearch alignment for GI: 255764514 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.49 E-value=9.7e-05 Score=50.19 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCEEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
Q ss_conf 227899998873898-189988999788899999998
Q gi|255764514|r 8 NIVLIESLDIDFSAG-LSILSGDTGSGKSILLDALIL 43 (554)
Q Consensus 8 Nf~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~~ 43 (554)
T Consensus 12 ~~~~l~~~~-~v~~GEiv~ilGpNGaGKSTllk~i~G 47 (177)
T cd03222 12 VFFLLVELG-VVKEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEECCCC-CCCCCCEEEEECCCCCCHHHHHHHHHC
T ss_conf 989865899-558998999989999999999999968