HHsearch alignment for GI: 255764514 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.74 E-value=5.6e-08 Score=71.53 Aligned_cols=71 Identities=27% Similarity=0.333 Sum_probs=61.9
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCCCEEEEEE
Q ss_conf 06215799999999984366899769980344688879999999999997305939998083798650176179999
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSKKIQLLAVTHAPQVAARADRHFLVYK 504 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~~~Qvi~ITH~pqvAa~a~~h~~v~K 504 (554)
T Consensus 92 LSGGqkQRvalARal~----~~p~iliLDEpTs~LD~~~~~~l~~~l~~~~--~Tvi~VtH~~~~~~~aDrvl~Ldg 162 (166)
T cd03223 92 LSGGEQQRLAFARLLL----HKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPSLWKFHDRVLDLDG 162 (166)
T ss_pred CCHHHHHHHHHHHHHH----CCCCEEEECCCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCHHHHHCCCEEEEEEC
T ss_conf 8999999999999996----4999999758533289999999999999779--989999434699972999999918