HHsearch alignment for GI: 255764514 and conserved domain: cd03224
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.87 E-value=3.4e-05 Score=53.19 Aligned_cols=39 Identities=21% Similarity=0.403 Sum_probs=32.0
Q ss_pred EECCEEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
Q ss_conf 94227899998873898-1899889997888999999987
Q gi|255764514|r 6 IYNIVLIESLDIDFSAG-LSILSGDTGSGKSILLDALILV 44 (554)
Q Consensus 6 i~Nf~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~~~ 44 (554)
T Consensus 10 yg~~~~L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl 49 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred ECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999998140899889989999999998599999999779