HHsearch alignment for GI: 255764514 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=4e-05 Score=52.75 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=30.2
Q ss_pred EEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7899998873898-18998899978889999999871
Q gi|255764514|r 10 VLIESLDIDFSAG-LSILSGDTGSGKSILLDALILVT 45 (554)
Q Consensus 10 ~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~~~l 45 (554)
T Consensus 16 ~iL~~isl~i~~Ge~i~ivG~sGsGKSTLl~ll~gl~ 52 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 6167718998599899999999983999999997677