HHsearch alignment for GI: 255764514 and conserved domain: cd03233
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.42 E-value=1.2e-06 Score=62.84 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=59.9
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEECHH--HHHHHCCCEEEEE
Q ss_conf 0621579999999998436689976998034468887999999999999730--59399980837--9865017617999
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSIPTLVFDEVDSGIGGAVADAIGYRLKQLSK--KIQLLAVTHAP--QVAARADRHFLVY 503 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~p~~ifDEiDagi~G~~a~~v~~~l~~ls~--~~Qvi~ITH~p--qvAa~a~~h~~v~ 503 (554)
T Consensus 119 LSgGqkqRv~iA~aL~----~~P~illlDEPt~gLD~~~~~~i~~~l~~l~~~~~~t~ii~~~~~~~~~~~~~Dri~vl~ 194 (202)
T cd03233 119 ISGGERKRVSIAEALV----SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY 194 (202)
T ss_pred CCHHHHHHHHHHHHHH----HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHCCEEEEEE
T ss_conf 8999999999999995----299889983876568999999999999999987799899999069899999699999995
Q ss_pred E
Q ss_conf 9
Q gi|255764514|r 504 K 504 (554)
Q Consensus 504 K 504 (554)
T Consensus 195 ~ 195 (202)
T cd03233 195 E 195 (202)
T ss_pred C
T ss_conf 9