HHsearch alignment for GI: 255764514 and conserved domain: cd03238

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.68  E-value=2.3e-07  Score=67.54  Aligned_cols=76  Identities=22%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             HCCHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHCCCEEEEEEE
Q ss_conf             062157999999999843668997-6998034468887999999999999730-59399980837986501761799996
Q gi|255764514|r  428 ASGGELSRFLLALKIVLVDQGSIP-TLVFDEVDSGIGGAVADAIGYRLKQLSK-KIQLLAVTHAPQVAARADRHFLVYKT  505 (554)
Q Consensus       428 aSGGE~Sr~~LAl~~~~~~~~~~p-~~ifDEiDagi~G~~a~~v~~~l~~ls~-~~Qvi~ITH~pqvAa~a~~h~~v~K~  505 (554)
T Consensus        88 LSGGqkQRvaiAraL~~---~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~~~~~~aDrii~l~~G  164 (176)
T cd03238          88 LSGGELQRVKLASELFS---EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPG  164 (176)
T ss_pred             CCHHHHHHHHHHHHHHH---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEECCC
T ss_conf             89999999999999986---899868997177445898799999999999998799899994787999839999994599


Q ss_pred             E
Q ss_conf             2
Q gi|255764514|r  506 N  506 (554)
Q Consensus       506 ~  506 (554)
T Consensus       165 ~  165 (176)
T cd03238         165 S  165 (176)
T ss_pred             C
T ss_conf             7