HHsearch alignment for GI: 255764514 and conserved domain: cd03238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.68 E-value=2.3e-07 Score=67.54 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=62.7
Q ss_pred HCCHHHHHHHHHHHHHHCCCCCCC-EEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEECHHHHHHHCCCEEEEEEE
Q ss_conf 062157999999999843668997-6998034468887999999999999730-59399980837986501761799996
Q gi|255764514|r 428 ASGGELSRFLLALKIVLVDQGSIP-TLVFDEVDSGIGGAVADAIGYRLKQLSK-KIQLLAVTHAPQVAARADRHFLVYKT 505 (554)
Q Consensus 428 aSGGE~Sr~~LAl~~~~~~~~~~p-~~ifDEiDagi~G~~a~~v~~~l~~ls~-~~Qvi~ITH~pqvAa~a~~h~~v~K~ 505 (554)
T Consensus 88 LSGGqkQRvaiAraL~~---~p~~~ililDEPtsgLD~~~~~~l~~~l~~l~~~g~TvI~vtHd~~~~~~aDrii~l~~G 164 (176)
T cd03238 88 LSGGELQRVKLASELFS---EPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPG 164 (176)
T ss_pred CCHHHHHHHHHHHHHHH---CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCEEEEECCC
T ss_conf 89999999999999986---899868997177445898799999999999998799899994787999839999994599
Q ss_pred E
Q ss_conf 2
Q gi|255764514|r 506 N 506 (554)
Q Consensus 506 ~ 506 (554)
T Consensus 165 ~ 165 (176)
T cd03238 165 S 165 (176)
T ss_pred C
T ss_conf 7