HHsearch alignment for GI: 255764514 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=3.4e-05 Score=53.20 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=28.7
Q ss_pred EEEEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
Q ss_conf 7899998873898-18998899978889999999
Q gi|255764514|r 10 VLIESLDIDFSAG-LSILSGDTGSGKSILLDALI 42 (554)
Q Consensus 10 ~~i~~~~i~f~~G-l~vItGetGaGKS~ildAl~ 42 (554)
T Consensus 16 ~vL~ninl~i~~Ge~i~IvG~sGsGKSTLl~ll~ 49 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49 (234)
T ss_pred CCEECEEEEECCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 7353608998799999999899982999999996